Multiple sequence alignment - TraesCS3B01G254000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G254000 chr3B 100.000 4359 0 0 1 4359 409274974 409279332 0.000000e+00 8050.0
1 TraesCS3B01G254000 chr3B 87.652 656 76 5 129 780 5759139 5758485 0.000000e+00 758.0
2 TraesCS3B01G254000 chr3B 95.276 127 4 2 1682 1807 743506733 743506858 2.660000e-47 200.0
3 TraesCS3B01G254000 chr3B 93.701 127 6 2 1690 1814 431771121 431771247 5.750000e-44 189.0
4 TraesCS3B01G254000 chr3A 90.246 1220 62 16 1806 2990 420334815 420336012 0.000000e+00 1541.0
5 TraesCS3B01G254000 chr3A 96.904 872 27 0 3488 4359 597969484 597968613 0.000000e+00 1461.0
6 TraesCS3B01G254000 chr3A 96.575 876 29 1 3484 4359 12177464 12178338 0.000000e+00 1450.0
7 TraesCS3B01G254000 chr3A 96.782 870 27 1 3490 4359 712723692 712722824 0.000000e+00 1450.0
8 TraesCS3B01G254000 chr3A 96.556 871 28 2 3489 4359 688891426 688890558 0.000000e+00 1441.0
9 TraesCS3B01G254000 chr3A 93.633 801 30 6 907 1688 420334010 420334808 0.000000e+00 1177.0
10 TraesCS3B01G254000 chr3A 90.157 447 31 6 3054 3487 420336013 420336459 1.760000e-158 569.0
11 TraesCS3B01G254000 chr3A 87.000 100 8 5 668 764 732233337 732233434 1.660000e-19 108.0
12 TraesCS3B01G254000 chr1B 97.706 872 19 1 3488 4359 569980012 569979142 0.000000e+00 1498.0
13 TraesCS3B01G254000 chr1B 97.241 870 23 1 3490 4359 27084224 27083356 0.000000e+00 1472.0
14 TraesCS3B01G254000 chr1B 90.769 520 42 5 266 780 90708845 90708327 0.000000e+00 689.0
15 TraesCS3B01G254000 chr1B 88.095 84 8 2 658 741 642959200 642959281 9.980000e-17 99.0
16 TraesCS3B01G254000 chr6B 97.589 871 21 0 3489 4359 213305679 213304809 0.000000e+00 1493.0
17 TraesCS3B01G254000 chr6B 92.262 168 13 0 1842 2009 36133500 36133667 5.630000e-59 239.0
18 TraesCS3B01G254000 chr6B 91.765 170 13 1 1839 2008 15042253 15042421 7.290000e-58 235.0
19 TraesCS3B01G254000 chr6B 96.610 118 4 0 1690 1807 652642541 652642424 3.440000e-46 196.0
20 TraesCS3B01G254000 chr6B 89.333 75 3 3 2988 3058 23023276 23023203 6.000000e-14 89.8
21 TraesCS3B01G254000 chr5A 96.339 874 32 0 3486 4359 143594549 143593676 0.000000e+00 1437.0
22 TraesCS3B01G254000 chr5A 89.749 439 42 3 343 778 523741411 523740973 3.810000e-155 558.0
23 TraesCS3B01G254000 chr5A 90.816 98 5 2 1548 1641 578056759 578056662 1.270000e-25 128.0
24 TraesCS3B01G254000 chr5A 86.207 87 5 4 2988 3067 638032980 638032894 2.160000e-13 87.9
25 TraesCS3B01G254000 chr5A 97.727 44 1 0 169 212 523741638 523741595 4.670000e-10 76.8
26 TraesCS3B01G254000 chr5A 84.746 59 5 2 838 894 523740978 523740922 6.090000e-04 56.5
27 TraesCS3B01G254000 chr5B 96.334 873 31 1 3488 4359 550171240 550170368 0.000000e+00 1434.0
28 TraesCS3B01G254000 chr5B 95.833 120 5 0 1684 1803 360499201 360499320 1.240000e-45 195.0
29 TraesCS3B01G254000 chr5B 94.186 86 1 2 1560 1641 62940407 62940322 1.270000e-25 128.0
30 TraesCS3B01G254000 chr5B 90.278 72 6 1 2988 3058 647891181 647891110 4.640000e-15 93.5
31 TraesCS3B01G254000 chr5B 86.207 87 5 3 2984 3065 600518212 600518296 2.160000e-13 87.9
32 TraesCS3B01G254000 chr3D 90.080 998 57 17 2006 2975 311869793 311868810 0.000000e+00 1256.0
33 TraesCS3B01G254000 chr3D 91.239 662 32 10 905 1563 311870532 311869894 0.000000e+00 878.0
34 TraesCS3B01G254000 chr3D 88.811 429 35 7 3053 3468 311868791 311868363 8.360000e-142 514.0
35 TraesCS3B01G254000 chr3D 94.969 159 8 0 1849 2007 87926158 87926000 2.600000e-62 250.0
36 TraesCS3B01G254000 chr3D 100.000 43 0 0 1803 1845 311869839 311869797 3.610000e-11 80.5
37 TraesCS3B01G254000 chr7D 92.366 786 47 8 1 780 596409804 596410582 0.000000e+00 1107.0
38 TraesCS3B01G254000 chr5D 83.792 327 44 8 1 325 495796562 495796243 7.080000e-78 302.0
39 TraesCS3B01G254000 chr4D 93.252 163 11 0 1845 2007 334164553 334164391 1.570000e-59 241.0
40 TraesCS3B01G254000 chr4D 92.727 165 12 0 1843 2007 479687424 479687260 5.630000e-59 239.0
41 TraesCS3B01G254000 chr4D 88.350 103 6 4 1543 1640 99662508 99662407 7.660000e-23 119.0
42 TraesCS3B01G254000 chrUn 93.210 162 11 0 1846 2007 141680746 141680907 5.630000e-59 239.0
43 TraesCS3B01G254000 chr2D 92.262 168 12 1 1842 2009 571078955 571079121 2.030000e-58 237.0
44 TraesCS3B01G254000 chr2D 91.228 171 15 0 1840 2010 291992060 291991890 2.620000e-57 233.0
45 TraesCS3B01G254000 chr2D 98.261 115 2 0 1690 1804 519130936 519131050 7.390000e-48 202.0
46 TraesCS3B01G254000 chr2D 91.398 93 4 2 1554 1642 589522247 589522339 1.650000e-24 124.0
47 TraesCS3B01G254000 chr7A 91.329 173 14 1 1845 2016 498937368 498937196 7.290000e-58 235.0
48 TraesCS3B01G254000 chr7A 90.667 75 3 2 2988 3058 350571793 350571867 3.590000e-16 97.1
49 TraesCS3B01G254000 chr7B 98.261 115 2 0 1690 1804 3887528 3887414 7.390000e-48 202.0
50 TraesCS3B01G254000 chr2B 95.935 123 5 0 1690 1812 174658679 174658557 2.660000e-47 200.0
51 TraesCS3B01G254000 chr2B 88.462 78 4 3 2988 3060 656941940 656942017 6.000000e-14 89.8
52 TraesCS3B01G254000 chr1D 96.639 119 4 0 1690 1808 52654409 52654291 9.560000e-47 198.0
53 TraesCS3B01G254000 chr1D 90.217 92 5 2 1560 1647 209139361 209139270 2.750000e-22 117.0
54 TraesCS3B01G254000 chr4A 95.082 122 6 0 1690 1811 689666267 689666388 4.450000e-45 193.0
55 TraesCS3B01G254000 chr4A 84.000 100 7 6 2988 3078 598725733 598725634 2.160000e-13 87.9
56 TraesCS3B01G254000 chr6A 94.318 88 1 2 1560 1643 93285788 93285701 9.840000e-27 132.0
57 TraesCS3B01G254000 chr6A 81.897 116 19 2 665 779 292625174 292625060 3.590000e-16 97.1
58 TraesCS3B01G254000 chr6A 86.250 80 10 1 701 779 292625427 292625348 7.770000e-13 86.1
59 TraesCS3B01G254000 chr4B 91.579 95 2 4 1560 1650 673204558 673204466 4.580000e-25 126.0
60 TraesCS3B01G254000 chr2A 85.484 124 14 4 658 779 221086513 221086634 4.580000e-25 126.0
61 TraesCS3B01G254000 chr2A 88.235 102 7 4 1547 1644 88278134 88278034 2.750000e-22 117.0
62 TraesCS3B01G254000 chr2A 86.905 84 6 3 2984 3062 61385993 61385910 6.000000e-14 89.8
63 TraesCS3B01G254000 chr1A 84.946 93 8 6 2985 3074 30190265 30190176 6.000000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G254000 chr3B 409274974 409279332 4358 False 8050.000000 8050 100.000000 1 4359 1 chr3B.!!$F1 4358
1 TraesCS3B01G254000 chr3B 5758485 5759139 654 True 758.000000 758 87.652000 129 780 1 chr3B.!!$R1 651
2 TraesCS3B01G254000 chr3A 597968613 597969484 871 True 1461.000000 1461 96.904000 3488 4359 1 chr3A.!!$R1 871
3 TraesCS3B01G254000 chr3A 12177464 12178338 874 False 1450.000000 1450 96.575000 3484 4359 1 chr3A.!!$F1 875
4 TraesCS3B01G254000 chr3A 712722824 712723692 868 True 1450.000000 1450 96.782000 3490 4359 1 chr3A.!!$R3 869
5 TraesCS3B01G254000 chr3A 688890558 688891426 868 True 1441.000000 1441 96.556000 3489 4359 1 chr3A.!!$R2 870
6 TraesCS3B01G254000 chr3A 420334010 420336459 2449 False 1095.666667 1541 91.345333 907 3487 3 chr3A.!!$F3 2580
7 TraesCS3B01G254000 chr1B 569979142 569980012 870 True 1498.000000 1498 97.706000 3488 4359 1 chr1B.!!$R3 871
8 TraesCS3B01G254000 chr1B 27083356 27084224 868 True 1472.000000 1472 97.241000 3490 4359 1 chr1B.!!$R1 869
9 TraesCS3B01G254000 chr1B 90708327 90708845 518 True 689.000000 689 90.769000 266 780 1 chr1B.!!$R2 514
10 TraesCS3B01G254000 chr6B 213304809 213305679 870 True 1493.000000 1493 97.589000 3489 4359 1 chr6B.!!$R2 870
11 TraesCS3B01G254000 chr5A 143593676 143594549 873 True 1437.000000 1437 96.339000 3486 4359 1 chr5A.!!$R1 873
12 TraesCS3B01G254000 chr5A 523740922 523741638 716 True 230.433333 558 90.740667 169 894 3 chr5A.!!$R4 725
13 TraesCS3B01G254000 chr5B 550170368 550171240 872 True 1434.000000 1434 96.334000 3488 4359 1 chr5B.!!$R2 871
14 TraesCS3B01G254000 chr3D 311868363 311870532 2169 True 682.125000 1256 92.532500 905 3468 4 chr3D.!!$R2 2563
15 TraesCS3B01G254000 chr7D 596409804 596410582 778 False 1107.000000 1107 92.366000 1 780 1 chr7D.!!$F1 779

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
884 969 0.105039 CCGCTAGACTTTAGGCCAGG 59.895 60.0 5.01 0.0 0.00 4.45 F
1709 1815 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.0 5.23 0.0 44.66 2.12 F
3116 3260 0.404040 TTCCCAATCCAGGAAGCGTT 59.596 50.0 0.00 0.0 38.49 4.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1786 1892 0.115745 ACTACTCCCTCCGTCCCAAA 59.884 55.000 0.0 0.0 0.00 3.28 R
3299 3445 1.144708 TCCTCAAAATGGCAGGTCACA 59.855 47.619 0.0 0.0 0.00 3.58 R
3927 4087 0.740737 ACACTTTCAGGTGCTTGTGC 59.259 50.000 0.0 0.0 40.52 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 3.072038 ACACATCATCGGGTCATCATCAT 59.928 43.478 0.00 0.00 0.00 2.45
40 41 3.325716 ACATCATCGGGTCATCATCATCA 59.674 43.478 0.00 0.00 0.00 3.07
61 62 6.713762 TCAGACCATTTCAGTTCAAACATT 57.286 33.333 0.00 0.00 0.00 2.71
62 63 7.111247 TCAGACCATTTCAGTTCAAACATTT 57.889 32.000 0.00 0.00 0.00 2.32
64 65 6.979817 CAGACCATTTCAGTTCAAACATTTGA 59.020 34.615 2.89 2.89 44.78 2.69
81 84 7.352079 ACATTTGAACTCCAAAGTCTGAAAT 57.648 32.000 0.00 0.00 46.72 2.17
83 86 8.912988 ACATTTGAACTCCAAAGTCTGAAATTA 58.087 29.630 0.00 0.00 46.72 1.40
108 111 3.134262 TCCTCATCCTGCAGAGAATTGAG 59.866 47.826 17.39 18.51 33.74 3.02
124 127 2.185004 TGAGTCCCTGTAAAAGCAGC 57.815 50.000 0.00 0.00 35.28 5.25
125 128 1.419762 TGAGTCCCTGTAAAAGCAGCA 59.580 47.619 0.00 0.00 35.28 4.41
126 129 2.079925 GAGTCCCTGTAAAAGCAGCAG 58.920 52.381 0.00 0.00 35.28 4.24
127 130 1.421646 AGTCCCTGTAAAAGCAGCAGT 59.578 47.619 0.00 0.00 35.28 4.40
252 261 9.803507 ATGATCCATCAAACTAATCACATGTAT 57.196 29.630 0.00 0.00 40.69 2.29
341 420 2.938451 CACACATCATGGCGTCACTTAT 59.062 45.455 0.00 0.00 0.00 1.73
345 424 0.908910 TCATGGCGTCACTTATGGGT 59.091 50.000 0.00 0.00 0.00 4.51
357 436 0.616395 TTATGGGTGTCCTCTCCGCA 60.616 55.000 0.00 0.00 0.00 5.69
391 471 0.700564 TGGCATGGAAGAAAGGCTCT 59.299 50.000 0.00 0.00 35.13 4.09
409 491 5.365895 AGGCTCTACGAAAACCCTATATTGT 59.634 40.000 0.00 0.00 0.00 2.71
412 494 5.979993 TCTACGAAAACCCTATATTGTGCA 58.020 37.500 0.00 0.00 0.00 4.57
418 500 1.494721 ACCCTATATTGTGCACCCTGG 59.505 52.381 15.69 7.66 0.00 4.45
434 516 2.224917 CCCTGGTAGCCCTACAAAACAA 60.225 50.000 7.66 0.00 37.78 2.83
474 556 1.077716 GGGGCACTAGGTTCGCATT 60.078 57.895 0.00 0.00 0.00 3.56
480 562 3.741344 GGCACTAGGTTCGCATTATGTAG 59.259 47.826 0.00 0.00 0.00 2.74
505 587 2.947652 CGTCCATGGCTTCAATCAGATT 59.052 45.455 6.96 0.00 0.00 2.40
506 588 3.242969 CGTCCATGGCTTCAATCAGATTG 60.243 47.826 16.12 16.12 41.57 2.67
611 694 2.642254 CGACTTGGCGACCAGGGTA 61.642 63.158 11.51 0.00 34.74 3.69
625 708 0.470766 AGGGTAAAGCGACACAACCA 59.529 50.000 0.00 0.00 31.58 3.67
639 722 1.070445 ACAACCAAACCATGCCATGTG 59.930 47.619 3.63 0.00 0.00 3.21
676 760 2.427095 GGAAACCGCCTAAAATCAGCAT 59.573 45.455 0.00 0.00 0.00 3.79
780 865 3.007506 TCGTCCATCACACTACATTTGGT 59.992 43.478 0.00 0.00 0.00 3.67
781 866 3.751175 CGTCCATCACACTACATTTGGTT 59.249 43.478 0.00 0.00 0.00 3.67
782 867 4.215399 CGTCCATCACACTACATTTGGTTT 59.785 41.667 0.00 0.00 0.00 3.27
783 868 5.278266 CGTCCATCACACTACATTTGGTTTT 60.278 40.000 0.00 0.00 0.00 2.43
784 869 6.512297 GTCCATCACACTACATTTGGTTTTT 58.488 36.000 0.00 0.00 0.00 1.94
810 895 7.962934 TTTTTCGAGACAACACTACATTTTG 57.037 32.000 0.00 0.00 0.00 2.44
811 896 5.666969 TTCGAGACAACACTACATTTTGG 57.333 39.130 0.00 0.00 0.00 3.28
812 897 4.062293 TCGAGACAACACTACATTTTGGG 58.938 43.478 0.00 0.00 0.00 4.12
813 898 3.188460 CGAGACAACACTACATTTTGGGG 59.812 47.826 0.00 0.00 0.00 4.96
814 899 4.142038 GAGACAACACTACATTTTGGGGT 58.858 43.478 0.00 0.00 0.00 4.95
815 900 4.542697 AGACAACACTACATTTTGGGGTT 58.457 39.130 0.00 0.00 0.00 4.11
816 901 4.959839 AGACAACACTACATTTTGGGGTTT 59.040 37.500 0.00 0.00 0.00 3.27
817 902 5.423931 AGACAACACTACATTTTGGGGTTTT 59.576 36.000 0.00 0.00 0.00 2.43
818 903 6.056090 ACAACACTACATTTTGGGGTTTTT 57.944 33.333 0.00 0.00 0.00 1.94
852 937 5.659079 AGACAAACTACATTTTGGGGTGAAA 59.341 36.000 1.04 0.00 40.25 2.69
853 938 6.326323 AGACAAACTACATTTTGGGGTGAAAT 59.674 34.615 1.04 0.00 40.25 2.17
854 939 7.507616 AGACAAACTACATTTTGGGGTGAAATA 59.492 33.333 1.04 0.00 40.25 1.40
855 940 8.201242 ACAAACTACATTTTGGGGTGAAATAT 57.799 30.769 1.04 0.00 40.25 1.28
856 941 8.093927 ACAAACTACATTTTGGGGTGAAATATG 58.906 33.333 1.04 0.00 40.25 1.78
857 942 6.790232 ACTACATTTTGGGGTGAAATATGG 57.210 37.500 0.00 0.00 0.00 2.74
858 943 6.498538 ACTACATTTTGGGGTGAAATATGGA 58.501 36.000 0.00 0.00 0.00 3.41
859 944 5.675684 ACATTTTGGGGTGAAATATGGAC 57.324 39.130 0.00 0.00 0.00 4.02
860 945 5.341169 ACATTTTGGGGTGAAATATGGACT 58.659 37.500 0.00 0.00 0.00 3.85
861 946 5.784906 ACATTTTGGGGTGAAATATGGACTT 59.215 36.000 0.00 0.00 0.00 3.01
862 947 5.993748 TTTTGGGGTGAAATATGGACTTC 57.006 39.130 0.00 0.00 0.00 3.01
863 948 4.946160 TTGGGGTGAAATATGGACTTCT 57.054 40.909 0.00 0.00 0.00 2.85
864 949 4.946160 TGGGGTGAAATATGGACTTCTT 57.054 40.909 0.00 0.00 0.00 2.52
865 950 4.855340 TGGGGTGAAATATGGACTTCTTC 58.145 43.478 0.00 0.00 0.00 2.87
866 951 4.207955 GGGGTGAAATATGGACTTCTTCC 58.792 47.826 0.00 0.00 46.13 3.46
876 961 3.596310 GGACTTCTTCCGCTAGACTTT 57.404 47.619 0.00 0.00 33.46 2.66
877 962 4.715527 GGACTTCTTCCGCTAGACTTTA 57.284 45.455 0.00 0.00 33.46 1.85
878 963 4.674475 GGACTTCTTCCGCTAGACTTTAG 58.326 47.826 0.00 0.00 33.46 1.85
879 964 4.440387 GGACTTCTTCCGCTAGACTTTAGG 60.440 50.000 0.00 0.00 33.46 2.69
880 965 3.119065 ACTTCTTCCGCTAGACTTTAGGC 60.119 47.826 0.00 0.00 0.00 3.93
881 966 1.755380 TCTTCCGCTAGACTTTAGGCC 59.245 52.381 0.00 0.00 0.00 5.19
882 967 1.480954 CTTCCGCTAGACTTTAGGCCA 59.519 52.381 5.01 0.00 0.00 5.36
883 968 1.112113 TCCGCTAGACTTTAGGCCAG 58.888 55.000 5.01 0.00 0.00 4.85
884 969 0.105039 CCGCTAGACTTTAGGCCAGG 59.895 60.000 5.01 0.00 0.00 4.45
885 970 0.530870 CGCTAGACTTTAGGCCAGGC 60.531 60.000 5.01 1.26 0.00 4.85
886 971 0.541863 GCTAGACTTTAGGCCAGGCA 59.458 55.000 15.19 0.00 0.00 4.75
887 972 1.065418 GCTAGACTTTAGGCCAGGCAA 60.065 52.381 15.19 0.00 0.00 4.52
888 973 2.618045 GCTAGACTTTAGGCCAGGCAAA 60.618 50.000 15.19 5.20 0.00 3.68
889 974 2.206576 AGACTTTAGGCCAGGCAAAG 57.793 50.000 18.58 18.58 35.78 2.77
890 975 0.528017 GACTTTAGGCCAGGCAAAGC 59.472 55.000 19.66 11.45 33.50 3.51
901 986 1.508088 GGCAAAGCCCATCACTTCG 59.492 57.895 0.00 0.00 44.06 3.79
902 987 1.508088 GCAAAGCCCATCACTTCGG 59.492 57.895 0.00 0.00 0.00 4.30
903 988 1.244019 GCAAAGCCCATCACTTCGGT 61.244 55.000 0.00 0.00 0.00 4.69
966 1051 7.068226 CCCTCCTTTTGTCTGTTCTAAGAAAAA 59.932 37.037 0.00 0.00 32.64 1.94
967 1052 8.131731 CCTCCTTTTGTCTGTTCTAAGAAAAAG 58.868 37.037 0.00 0.00 35.36 2.27
1121 1212 2.686816 CGAAGCGGCGGAAATGGTT 61.687 57.895 9.78 0.00 0.00 3.67
1186 1277 2.126618 CGTCTACCGCGACTGCAA 60.127 61.111 8.23 0.00 42.97 4.08
1210 1301 1.413767 GACTACATCGGCGTGCACAG 61.414 60.000 18.64 10.86 0.00 3.66
1309 1400 7.813852 GTAGTATACTTTGAGTGTGGTCTTG 57.186 40.000 11.40 0.00 38.91 3.02
1444 1535 3.885297 CACATCTTGGGTTGTCTGAACTT 59.115 43.478 0.00 0.00 0.00 2.66
1465 1557 1.514087 CGAGTTTAGCCCGGTAGCA 59.486 57.895 0.00 0.00 34.23 3.49
1563 1657 9.924650 TTATGTCTTTTTCTTAGTGTCCTACTC 57.075 33.333 0.00 0.00 40.89 2.59
1688 1794 2.573083 GGTGGTGGGGTGCAACATG 61.573 63.158 3.06 0.00 39.98 3.21
1689 1795 2.916703 TGGTGGGGTGCAACATGC 60.917 61.111 3.06 0.00 45.29 4.06
1691 1797 2.639327 GGTGGGGTGCAACATGCTC 61.639 63.158 3.06 0.00 45.31 4.26
1696 1802 3.595819 GTGCAACATGCTCCCTCC 58.404 61.111 3.78 0.00 45.31 4.30
1697 1803 2.046023 TGCAACATGCTCCCTCCG 60.046 61.111 3.78 0.00 45.31 4.63
1698 1804 2.045926 GCAACATGCTCCCTCCGT 60.046 61.111 0.00 0.00 40.96 4.69
1699 1805 2.109126 GCAACATGCTCCCTCCGTC 61.109 63.158 0.00 0.00 40.96 4.79
1700 1806 1.450312 CAACATGCTCCCTCCGTCC 60.450 63.158 0.00 0.00 0.00 4.79
1701 1807 3.019003 AACATGCTCCCTCCGTCCG 62.019 63.158 0.00 0.00 0.00 4.79
1702 1808 4.227134 CATGCTCCCTCCGTCCGG 62.227 72.222 0.00 0.00 0.00 5.14
1703 1809 4.458829 ATGCTCCCTCCGTCCGGA 62.459 66.667 0.00 0.00 42.90 5.14
1704 1810 3.976490 ATGCTCCCTCCGTCCGGAA 62.976 63.158 5.23 0.00 44.66 4.30
1705 1811 3.387947 GCTCCCTCCGTCCGGAAA 61.388 66.667 5.23 0.00 44.66 3.13
1706 1812 2.732619 GCTCCCTCCGTCCGGAAAT 61.733 63.158 5.23 0.00 44.66 2.17
1707 1813 1.397390 GCTCCCTCCGTCCGGAAATA 61.397 60.000 5.23 0.00 44.66 1.40
1708 1814 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
1709 1815 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
1710 1816 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
1711 1817 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
1712 1818 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
1713 1819 2.354403 CCTCCGTCCGGAAATACTTGTT 60.354 50.000 5.23 0.00 44.66 2.83
1714 1820 2.671396 CTCCGTCCGGAAATACTTGTTG 59.329 50.000 5.23 0.00 44.66 3.33
1715 1821 1.735571 CCGTCCGGAAATACTTGTTGG 59.264 52.381 5.23 0.00 37.50 3.77
1716 1822 2.613474 CCGTCCGGAAATACTTGTTGGA 60.613 50.000 5.23 0.00 37.50 3.53
1717 1823 2.414138 CGTCCGGAAATACTTGTTGGAC 59.586 50.000 5.23 0.00 40.71 4.02
1718 1824 3.404899 GTCCGGAAATACTTGTTGGACA 58.595 45.455 5.23 0.00 42.99 4.02
1719 1825 3.816523 GTCCGGAAATACTTGTTGGACAA 59.183 43.478 5.23 0.00 42.99 3.18
1720 1826 4.276431 GTCCGGAAATACTTGTTGGACAAA 59.724 41.667 5.23 0.00 42.99 2.83
1721 1827 5.048294 GTCCGGAAATACTTGTTGGACAAAT 60.048 40.000 5.23 0.00 42.99 2.32
1722 1828 5.048364 TCCGGAAATACTTGTTGGACAAATG 60.048 40.000 0.00 0.00 37.69 2.32
1723 1829 5.160641 CGGAAATACTTGTTGGACAAATGG 58.839 41.667 0.00 0.00 37.69 3.16
1724 1830 5.048364 CGGAAATACTTGTTGGACAAATGGA 60.048 40.000 0.00 0.00 37.69 3.41
1725 1831 6.350110 CGGAAATACTTGTTGGACAAATGGAT 60.350 38.462 0.00 0.00 37.69 3.41
1726 1832 6.813152 GGAAATACTTGTTGGACAAATGGATG 59.187 38.462 0.00 0.00 37.69 3.51
1727 1833 6.916360 AATACTTGTTGGACAAATGGATGT 57.084 33.333 0.00 0.00 37.69 3.06
1728 1834 8.415950 AAATACTTGTTGGACAAATGGATGTA 57.584 30.769 0.00 0.00 37.69 2.29
1729 1835 8.593945 AATACTTGTTGGACAAATGGATGTAT 57.406 30.769 0.00 0.00 37.69 2.29
1730 1836 6.515272 ACTTGTTGGACAAATGGATGTATC 57.485 37.500 0.00 0.00 37.69 2.24
1731 1837 6.248433 ACTTGTTGGACAAATGGATGTATCT 58.752 36.000 0.00 0.00 37.69 1.98
1732 1838 7.402054 ACTTGTTGGACAAATGGATGTATCTA 58.598 34.615 0.00 0.00 37.69 1.98
1733 1839 7.554118 ACTTGTTGGACAAATGGATGTATCTAG 59.446 37.037 0.00 0.00 37.69 2.43
1734 1840 7.194112 TGTTGGACAAATGGATGTATCTAGA 57.806 36.000 0.00 0.00 32.57 2.43
1735 1841 7.805163 TGTTGGACAAATGGATGTATCTAGAT 58.195 34.615 10.73 10.73 32.57 1.98
1736 1842 7.716560 TGTTGGACAAATGGATGTATCTAGATG 59.283 37.037 15.79 0.00 32.57 2.90
1737 1843 7.379059 TGGACAAATGGATGTATCTAGATGT 57.621 36.000 15.79 1.67 32.57 3.06
1738 1844 8.491045 TGGACAAATGGATGTATCTAGATGTA 57.509 34.615 15.79 4.44 32.57 2.29
1739 1845 9.104713 TGGACAAATGGATGTATCTAGATGTAT 57.895 33.333 15.79 9.11 32.57 2.29
1740 1846 9.950496 GGACAAATGGATGTATCTAGATGTATT 57.050 33.333 15.79 4.32 32.57 1.89
1779 1885 9.057089 ACATCTATTTTTATCCATTTCTCCGAC 57.943 33.333 0.00 0.00 0.00 4.79
1780 1886 9.056005 CATCTATTTTTATCCATTTCTCCGACA 57.944 33.333 0.00 0.00 0.00 4.35
1781 1887 9.627123 ATCTATTTTTATCCATTTCTCCGACAA 57.373 29.630 0.00 0.00 0.00 3.18
1782 1888 9.109393 TCTATTTTTATCCATTTCTCCGACAAG 57.891 33.333 0.00 0.00 0.00 3.16
1783 1889 7.703058 ATTTTTATCCATTTCTCCGACAAGT 57.297 32.000 0.00 0.00 0.00 3.16
1784 1890 8.801882 ATTTTTATCCATTTCTCCGACAAGTA 57.198 30.769 0.00 0.00 0.00 2.24
1785 1891 8.801882 TTTTTATCCATTTCTCCGACAAGTAT 57.198 30.769 0.00 0.00 0.00 2.12
1786 1892 8.801882 TTTTATCCATTTCTCCGACAAGTATT 57.198 30.769 0.00 0.00 0.00 1.89
1787 1893 8.801882 TTTATCCATTTCTCCGACAAGTATTT 57.198 30.769 0.00 0.00 0.00 1.40
1788 1894 8.801882 TTATCCATTTCTCCGACAAGTATTTT 57.198 30.769 0.00 0.00 0.00 1.82
1789 1895 6.494893 TCCATTTCTCCGACAAGTATTTTG 57.505 37.500 0.00 0.00 0.00 2.44
1790 1896 5.414454 TCCATTTCTCCGACAAGTATTTTGG 59.586 40.000 0.00 0.00 0.00 3.28
1791 1897 5.393027 CCATTTCTCCGACAAGTATTTTGGG 60.393 44.000 0.00 0.00 0.00 4.12
1792 1898 4.627284 TTCTCCGACAAGTATTTTGGGA 57.373 40.909 0.00 0.00 0.00 4.37
1793 1899 3.934068 TCTCCGACAAGTATTTTGGGAC 58.066 45.455 0.00 0.00 0.00 4.46
1794 1900 2.671396 CTCCGACAAGTATTTTGGGACG 59.329 50.000 0.00 0.00 0.00 4.79
1795 1901 1.735571 CCGACAAGTATTTTGGGACGG 59.264 52.381 0.00 0.00 0.00 4.79
1796 1902 2.613474 CCGACAAGTATTTTGGGACGGA 60.613 50.000 0.00 0.00 37.12 4.69
1797 1903 2.671396 CGACAAGTATTTTGGGACGGAG 59.329 50.000 0.00 0.00 0.00 4.63
1798 1904 3.007635 GACAAGTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
1799 1905 2.290705 ACAAGTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
1800 1906 1.961133 AGTATTTTGGGACGGAGGGA 58.039 50.000 0.00 0.00 0.00 4.20
1801 1907 1.838077 AGTATTTTGGGACGGAGGGAG 59.162 52.381 0.00 0.00 0.00 4.30
1859 1968 8.258850 TGAATATTAAGTATTCCCTCCGTTCT 57.741 34.615 11.70 0.00 45.34 3.01
1925 2034 8.959705 ACGGATGTATATAGACATATTCGAGA 57.040 34.615 24.16 0.00 40.18 4.04
2010 2119 0.702902 AGGAACGGAGGGAGTACTGA 59.297 55.000 0.00 0.00 0.00 3.41
2021 2130 2.297597 GGGAGTACTGATCTAGCGCATT 59.702 50.000 11.47 0.00 0.00 3.56
2028 2137 5.568685 ACTGATCTAGCGCATTATCGTAT 57.431 39.130 11.47 0.00 0.00 3.06
2050 2159 2.755655 GCTCCTAGCTGTGTAAGTCTGA 59.244 50.000 0.00 0.00 38.45 3.27
2089 2199 0.602562 ATGGCCATTGTTGGTTGTCG 59.397 50.000 14.09 0.00 45.57 4.35
2108 2218 1.071605 GCTAGCAAGTGTCCTGTTCG 58.928 55.000 10.63 0.00 0.00 3.95
2201 2325 4.919774 TGCAGGGGATAACAAAGTTCTA 57.080 40.909 0.00 0.00 0.00 2.10
2511 2635 4.349930 TGGCTTCCTCTAACAGGTAAAAGT 59.650 41.667 0.00 0.00 43.95 2.66
2514 2638 6.264744 GGCTTCCTCTAACAGGTAAAAGTTTT 59.735 38.462 6.06 6.06 43.95 2.43
2515 2639 7.361127 GCTTCCTCTAACAGGTAAAAGTTTTC 58.639 38.462 3.60 0.00 43.95 2.29
2543 2668 4.286297 AGCTTACACATTGCTTCCTGTA 57.714 40.909 0.00 0.00 32.61 2.74
2545 2670 4.455877 AGCTTACACATTGCTTCCTGTAAC 59.544 41.667 0.00 0.00 32.61 2.50
2547 2672 3.222173 ACACATTGCTTCCTGTAACCA 57.778 42.857 0.00 0.00 0.00 3.67
2548 2673 3.766545 ACACATTGCTTCCTGTAACCAT 58.233 40.909 0.00 0.00 0.00 3.55
2549 2674 4.917385 ACACATTGCTTCCTGTAACCATA 58.083 39.130 0.00 0.00 0.00 2.74
2551 2676 5.183140 ACACATTGCTTCCTGTAACCATAAC 59.817 40.000 0.00 0.00 0.00 1.89
2552 2677 4.394920 ACATTGCTTCCTGTAACCATAACG 59.605 41.667 0.00 0.00 0.00 3.18
2553 2678 2.980568 TGCTTCCTGTAACCATAACGG 58.019 47.619 0.00 0.00 42.50 4.44
2606 2731 5.535753 GCCCAAGGCTTCATGTTAATAAT 57.464 39.130 0.00 0.00 46.69 1.28
2614 2739 5.750067 GGCTTCATGTTAATAATTGCACCTG 59.250 40.000 0.00 0.00 0.00 4.00
2618 2743 2.763448 TGTTAATAATTGCACCTGGCCC 59.237 45.455 0.00 0.00 43.89 5.80
2668 2793 6.073058 TGTCTGCAAACATCTACTGCTTTTAG 60.073 38.462 0.00 0.00 37.00 1.85
2675 2800 4.997395 ACATCTACTGCTTTTAGTGGTGTG 59.003 41.667 0.00 0.00 31.80 3.82
2693 2818 4.319177 GTGTGCTAGTCCAGTTCTTCAAT 58.681 43.478 0.00 0.00 0.00 2.57
2695 2820 3.126000 GTGCTAGTCCAGTTCTTCAATGC 59.874 47.826 0.00 0.00 0.00 3.56
2697 2822 3.373439 GCTAGTCCAGTTCTTCAATGCTG 59.627 47.826 0.00 0.00 0.00 4.41
2782 2907 5.215252 AGCTGATGGTACGTATTATTGCT 57.785 39.130 0.00 7.81 0.00 3.91
2787 2912 6.521162 TGATGGTACGTATTATTGCTGACAT 58.479 36.000 0.00 0.00 0.00 3.06
2825 2950 2.368439 TGTGTTATGAGCATGCCCTTC 58.632 47.619 15.66 6.25 0.00 3.46
2836 2961 3.701040 AGCATGCCCTTCGTTTTATCATT 59.299 39.130 15.66 0.00 0.00 2.57
2837 2962 4.887071 AGCATGCCCTTCGTTTTATCATTA 59.113 37.500 15.66 0.00 0.00 1.90
2841 2966 7.865385 GCATGCCCTTCGTTTTATCATTATTAA 59.135 33.333 6.36 0.00 0.00 1.40
2848 2973 7.266922 TCGTTTTATCATTATTAAGGGTGGC 57.733 36.000 0.00 0.00 0.00 5.01
2853 2979 5.912149 ATCATTATTAAGGGTGGCTGAGA 57.088 39.130 0.00 0.00 0.00 3.27
2883 3015 7.325014 AGTAGGTTTCATGGGACAAGCTACC 62.325 48.000 21.00 0.00 46.03 3.18
2906 3038 6.153340 ACCGTTTCCATTGATTCTTGATTGAT 59.847 34.615 0.00 0.00 0.00 2.57
2980 3124 5.951747 TCTTTTAATTGCCATTGCTCCTACT 59.048 36.000 0.00 0.00 38.71 2.57
2989 3133 4.571176 GCCATTGCTCCTACTAACAACTAC 59.429 45.833 0.00 0.00 33.53 2.73
2990 3134 5.627040 GCCATTGCTCCTACTAACAACTACT 60.627 44.000 0.00 0.00 33.53 2.57
2991 3135 6.407202 CCATTGCTCCTACTAACAACTACTT 58.593 40.000 0.00 0.00 0.00 2.24
2992 3136 6.535508 CCATTGCTCCTACTAACAACTACTTC 59.464 42.308 0.00 0.00 0.00 3.01
2993 3137 5.656213 TGCTCCTACTAACAACTACTTCC 57.344 43.478 0.00 0.00 0.00 3.46
2994 3138 5.331069 TGCTCCTACTAACAACTACTTCCT 58.669 41.667 0.00 0.00 0.00 3.36
2995 3139 5.418209 TGCTCCTACTAACAACTACTTCCTC 59.582 44.000 0.00 0.00 0.00 3.71
2996 3140 5.163530 GCTCCTACTAACAACTACTTCCTCC 60.164 48.000 0.00 0.00 0.00 4.30
2997 3141 4.946157 TCCTACTAACAACTACTTCCTCCG 59.054 45.833 0.00 0.00 0.00 4.63
2998 3142 4.704057 CCTACTAACAACTACTTCCTCCGT 59.296 45.833 0.00 0.00 0.00 4.69
2999 3143 5.184671 CCTACTAACAACTACTTCCTCCGTT 59.815 44.000 0.00 0.00 0.00 4.44
3000 3144 5.131594 ACTAACAACTACTTCCTCCGTTC 57.868 43.478 0.00 0.00 0.00 3.95
3001 3145 3.397849 AACAACTACTTCCTCCGTTCC 57.602 47.619 0.00 0.00 0.00 3.62
3002 3146 2.322658 ACAACTACTTCCTCCGTTCCA 58.677 47.619 0.00 0.00 0.00 3.53
3003 3147 2.701951 ACAACTACTTCCTCCGTTCCAA 59.298 45.455 0.00 0.00 0.00 3.53
3004 3148 3.135167 ACAACTACTTCCTCCGTTCCAAA 59.865 43.478 0.00 0.00 0.00 3.28
3005 3149 4.131596 CAACTACTTCCTCCGTTCCAAAA 58.868 43.478 0.00 0.00 0.00 2.44
3006 3150 4.635699 ACTACTTCCTCCGTTCCAAAAT 57.364 40.909 0.00 0.00 0.00 1.82
3007 3151 5.750352 ACTACTTCCTCCGTTCCAAAATA 57.250 39.130 0.00 0.00 0.00 1.40
3008 3152 6.117975 ACTACTTCCTCCGTTCCAAAATAA 57.882 37.500 0.00 0.00 0.00 1.40
3009 3153 6.171213 ACTACTTCCTCCGTTCCAAAATAAG 58.829 40.000 0.00 0.00 0.00 1.73
3010 3154 4.981812 ACTTCCTCCGTTCCAAAATAAGT 58.018 39.130 0.00 0.00 0.00 2.24
3011 3155 4.760204 ACTTCCTCCGTTCCAAAATAAGTG 59.240 41.667 0.00 0.00 0.00 3.16
3012 3156 4.360951 TCCTCCGTTCCAAAATAAGTGT 57.639 40.909 0.00 0.00 0.00 3.55
3013 3157 4.320870 TCCTCCGTTCCAAAATAAGTGTC 58.679 43.478 0.00 0.00 0.00 3.67
3014 3158 4.041198 TCCTCCGTTCCAAAATAAGTGTCT 59.959 41.667 0.00 0.00 0.00 3.41
3015 3159 4.392138 CCTCCGTTCCAAAATAAGTGTCTC 59.608 45.833 0.00 0.00 0.00 3.36
3016 3160 4.963373 TCCGTTCCAAAATAAGTGTCTCA 58.037 39.130 0.00 0.00 0.00 3.27
3017 3161 5.369833 TCCGTTCCAAAATAAGTGTCTCAA 58.630 37.500 0.00 0.00 0.00 3.02
3018 3162 5.237779 TCCGTTCCAAAATAAGTGTCTCAAC 59.762 40.000 0.00 0.00 0.00 3.18
3019 3163 5.238650 CCGTTCCAAAATAAGTGTCTCAACT 59.761 40.000 0.00 0.00 0.00 3.16
3020 3164 6.238648 CCGTTCCAAAATAAGTGTCTCAACTT 60.239 38.462 0.00 0.00 42.89 2.66
3021 3165 7.193595 CGTTCCAAAATAAGTGTCTCAACTTT 58.806 34.615 0.00 0.00 40.77 2.66
3022 3166 7.165812 CGTTCCAAAATAAGTGTCTCAACTTTG 59.834 37.037 0.00 0.00 40.77 2.77
3023 3167 7.639113 TCCAAAATAAGTGTCTCAACTTTGT 57.361 32.000 0.00 0.00 40.77 2.83
3024 3168 8.740123 TCCAAAATAAGTGTCTCAACTTTGTA 57.260 30.769 0.00 0.00 40.77 2.41
3025 3169 8.617809 TCCAAAATAAGTGTCTCAACTTTGTAC 58.382 33.333 0.00 0.00 40.77 2.90
3026 3170 7.860872 CCAAAATAAGTGTCTCAACTTTGTACC 59.139 37.037 0.00 0.00 40.77 3.34
3027 3171 8.402472 CAAAATAAGTGTCTCAACTTTGTACCA 58.598 33.333 0.00 0.00 40.77 3.25
3028 3172 8.514330 AAATAAGTGTCTCAACTTTGTACCAA 57.486 30.769 0.00 0.00 40.77 3.67
3029 3173 8.691661 AATAAGTGTCTCAACTTTGTACCAAT 57.308 30.769 0.00 0.00 40.77 3.16
3030 3174 6.377327 AAGTGTCTCAACTTTGTACCAATG 57.623 37.500 0.00 0.00 37.05 2.82
3031 3175 5.680619 AGTGTCTCAACTTTGTACCAATGA 58.319 37.500 0.00 0.00 0.00 2.57
3032 3176 5.527582 AGTGTCTCAACTTTGTACCAATGAC 59.472 40.000 0.00 0.00 0.00 3.06
3033 3177 5.295787 GTGTCTCAACTTTGTACCAATGACA 59.704 40.000 0.00 0.00 0.00 3.58
3034 3178 5.295787 TGTCTCAACTTTGTACCAATGACAC 59.704 40.000 0.00 0.00 0.00 3.67
3035 3179 5.527582 GTCTCAACTTTGTACCAATGACACT 59.472 40.000 0.00 0.00 0.00 3.55
3036 3180 6.038271 GTCTCAACTTTGTACCAATGACACTT 59.962 38.462 0.00 0.00 0.00 3.16
3037 3181 7.225931 GTCTCAACTTTGTACCAATGACACTTA 59.774 37.037 0.00 0.00 0.00 2.24
3038 3182 7.936847 TCTCAACTTTGTACCAATGACACTTAT 59.063 33.333 0.00 0.00 0.00 1.73
3039 3183 8.458573 TCAACTTTGTACCAATGACACTTATT 57.541 30.769 0.00 0.00 0.00 1.40
3040 3184 8.908903 TCAACTTTGTACCAATGACACTTATTT 58.091 29.630 0.00 0.00 0.00 1.40
3041 3185 9.528018 CAACTTTGTACCAATGACACTTATTTT 57.472 29.630 0.00 0.00 0.00 1.82
3042 3186 9.528018 AACTTTGTACCAATGACACTTATTTTG 57.472 29.630 0.00 0.00 0.00 2.44
3043 3187 8.141268 ACTTTGTACCAATGACACTTATTTTGG 58.859 33.333 2.36 2.36 42.02 3.28
3044 3188 6.582677 TGTACCAATGACACTTATTTTGGG 57.417 37.500 7.88 0.00 40.89 4.12
3045 3189 6.307776 TGTACCAATGACACTTATTTTGGGA 58.692 36.000 7.88 0.00 40.89 4.37
3046 3190 5.722021 ACCAATGACACTTATTTTGGGAC 57.278 39.130 7.88 0.00 40.89 4.46
3047 3191 4.217550 ACCAATGACACTTATTTTGGGACG 59.782 41.667 7.88 0.00 40.89 4.79
3048 3192 4.380444 CCAATGACACTTATTTTGGGACGG 60.380 45.833 0.00 0.00 34.51 4.79
3049 3193 3.773418 TGACACTTATTTTGGGACGGA 57.227 42.857 0.00 0.00 0.00 4.69
3050 3194 3.670625 TGACACTTATTTTGGGACGGAG 58.329 45.455 0.00 0.00 0.00 4.63
3051 3195 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
3080 3224 4.844998 TTGAAATGTTTTGCTCGATGGA 57.155 36.364 0.00 0.00 0.00 3.41
3116 3260 0.404040 TTCCCAATCCAGGAAGCGTT 59.596 50.000 0.00 0.00 38.49 4.84
3211 3355 5.665459 CTCTTGTAATCTCGGTGGATTCTT 58.335 41.667 0.00 0.00 37.20 2.52
3213 3357 7.361457 TCTTGTAATCTCGGTGGATTCTTAT 57.639 36.000 0.00 0.00 37.20 1.73
3228 3372 6.321181 TGGATTCTTATATTCACTTTGTGCCC 59.679 38.462 0.00 0.00 32.98 5.36
3243 3389 1.028905 TGCCCCAAAGTTGAAAGACG 58.971 50.000 0.00 0.00 0.00 4.18
3299 3445 4.985538 TCTTGCTTTTGTACCTGGAAGAT 58.014 39.130 0.00 0.00 33.25 2.40
3326 3472 0.826062 GCCATTTTGAGGACCCATGG 59.174 55.000 4.14 4.14 37.96 3.66
3346 3492 4.960938 TGGTCGAATCTATGGAATCTTGG 58.039 43.478 0.00 0.00 0.00 3.61
3381 3527 9.431887 TGACACTTTATACTACTGTGGATTTTC 57.568 33.333 0.00 0.00 33.44 2.29
3382 3528 9.654663 GACACTTTATACTACTGTGGATTTTCT 57.345 33.333 0.00 0.00 33.44 2.52
3383 3529 9.436957 ACACTTTATACTACTGTGGATTTTCTG 57.563 33.333 0.00 0.00 33.44 3.02
3392 3543 6.199937 ACTGTGGATTTTCTGTTATCATGC 57.800 37.500 0.00 0.00 0.00 4.06
3412 3563 9.986157 ATCATGCCATATTTGGAGAATATAACT 57.014 29.630 6.35 0.00 46.92 2.24
3413 3564 9.812347 TCATGCCATATTTGGAGAATATAACTT 57.188 29.630 6.35 0.00 46.92 2.66
3439 3597 9.457110 TTTTTGTGTGTGTGATGAATATAACAC 57.543 29.630 1.72 1.72 45.38 3.32
3456 3614 4.592936 CGTCGAGCTAGCCCGTCG 62.593 72.222 21.29 21.29 34.98 5.12
3657 3816 4.778213 TTGGCCTCTCTATAGCAATGTT 57.222 40.909 3.32 0.00 0.00 2.71
3718 3877 4.959210 ACACTCTGTGATGATAGCTACCTT 59.041 41.667 0.00 0.00 36.96 3.50
3927 4087 2.738521 CGTCCCGAGCCACAACAG 60.739 66.667 0.00 0.00 0.00 3.16
3995 4155 8.037758 ACATTTATCTTCACGATCCCATATCTC 58.962 37.037 0.00 0.00 33.48 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 6.713762 AATGTTTGAACTGAAATGGTCTGA 57.286 33.333 0.00 0.00 0.00 3.27
40 41 7.111247 TCAAATGTTTGAACTGAAATGGTCT 57.889 32.000 5.75 0.00 43.62 3.85
61 62 8.463930 ACATAATTTCAGACTTTGGAGTTCAA 57.536 30.769 0.00 0.00 35.88 2.69
62 63 7.174946 GGACATAATTTCAGACTTTGGAGTTCA 59.825 37.037 0.00 0.00 35.88 3.18
64 65 7.234355 AGGACATAATTTCAGACTTTGGAGTT 58.766 34.615 0.00 0.00 35.88 3.01
65 66 6.784031 AGGACATAATTTCAGACTTTGGAGT 58.216 36.000 0.00 0.00 39.32 3.85
66 67 6.881065 TGAGGACATAATTTCAGACTTTGGAG 59.119 38.462 0.00 0.00 0.00 3.86
70 73 7.555554 CAGGATGAGGACATAATTTCAGACTTT 59.444 37.037 0.00 0.00 39.69 2.66
81 84 3.646534 TCTCTGCAGGATGAGGACATAA 58.353 45.455 15.13 0.00 39.69 1.90
83 86 2.171568 TCTCTGCAGGATGAGGACAT 57.828 50.000 15.13 0.00 39.69 3.06
108 111 1.807142 GACTGCTGCTTTTACAGGGAC 59.193 52.381 0.00 0.00 38.16 4.46
252 261 9.419593 GCCATGAGCTGTTGGATATACTCCATA 62.420 44.444 14.37 0.00 45.95 2.74
281 360 1.872237 GCCTTGACGAGTGTGTTAGCA 60.872 52.381 0.00 0.00 0.00 3.49
341 420 3.311110 GTGCGGAGAGGACACCCA 61.311 66.667 0.00 0.00 41.21 4.51
357 436 4.066490 CCATGCCATGTTTTGTTCATTGT 58.934 39.130 3.63 0.00 0.00 2.71
391 471 4.877251 GGTGCACAATATAGGGTTTTCGTA 59.123 41.667 20.43 0.00 0.00 3.43
409 491 1.993391 GTAGGGCTACCAGGGTGCA 60.993 63.158 0.06 0.00 40.13 4.57
412 494 1.353358 GTTTTGTAGGGCTACCAGGGT 59.647 52.381 0.00 0.00 40.13 4.34
418 500 3.756963 CCTCCTTTGTTTTGTAGGGCTAC 59.243 47.826 0.00 0.00 36.63 3.58
474 556 0.679505 GCCATGGACGGAGCTACATA 59.320 55.000 18.40 0.00 0.00 2.29
480 562 0.749454 ATTGAAGCCATGGACGGAGC 60.749 55.000 18.40 0.00 0.00 4.70
505 587 1.557371 TGATCGGGGCACTAATTCACA 59.443 47.619 0.00 0.00 0.00 3.58
506 588 2.325583 TGATCGGGGCACTAATTCAC 57.674 50.000 0.00 0.00 0.00 3.18
611 694 1.178276 TGGTTTGGTTGTGTCGCTTT 58.822 45.000 0.00 0.00 0.00 3.51
625 708 0.604578 GTGCTCACATGGCATGGTTT 59.395 50.000 29.49 7.85 41.86 3.27
676 760 1.133606 GTCCCCCTTGAGTGGTTTTGA 60.134 52.381 0.00 0.00 0.00 2.69
786 871 6.970043 CCAAAATGTAGTGTTGTCTCGAAAAA 59.030 34.615 0.00 0.00 0.00 1.94
787 872 6.459024 CCCAAAATGTAGTGTTGTCTCGAAAA 60.459 38.462 0.00 0.00 0.00 2.29
788 873 5.008217 CCCAAAATGTAGTGTTGTCTCGAAA 59.992 40.000 0.00 0.00 0.00 3.46
789 874 4.513692 CCCAAAATGTAGTGTTGTCTCGAA 59.486 41.667 0.00 0.00 0.00 3.71
790 875 4.062293 CCCAAAATGTAGTGTTGTCTCGA 58.938 43.478 0.00 0.00 0.00 4.04
791 876 3.188460 CCCCAAAATGTAGTGTTGTCTCG 59.812 47.826 0.00 0.00 0.00 4.04
792 877 4.142038 ACCCCAAAATGTAGTGTTGTCTC 58.858 43.478 0.00 0.00 0.00 3.36
793 878 4.178956 ACCCCAAAATGTAGTGTTGTCT 57.821 40.909 0.00 0.00 0.00 3.41
794 879 4.929819 AACCCCAAAATGTAGTGTTGTC 57.070 40.909 0.00 0.00 0.00 3.18
795 880 5.685520 AAAACCCCAAAATGTAGTGTTGT 57.314 34.783 0.00 0.00 0.00 3.32
822 907 7.044798 CCCCAAAATGTAGTTTGTCTCAAAAA 58.955 34.615 4.41 0.00 36.87 1.94
823 908 6.155393 ACCCCAAAATGTAGTTTGTCTCAAAA 59.845 34.615 4.41 0.00 36.87 2.44
824 909 5.659079 ACCCCAAAATGTAGTTTGTCTCAAA 59.341 36.000 4.41 0.00 36.87 2.69
825 910 5.068460 CACCCCAAAATGTAGTTTGTCTCAA 59.932 40.000 4.41 0.00 36.87 3.02
826 911 4.582656 CACCCCAAAATGTAGTTTGTCTCA 59.417 41.667 4.41 0.00 36.87 3.27
827 912 4.825085 TCACCCCAAAATGTAGTTTGTCTC 59.175 41.667 4.41 0.00 36.87 3.36
828 913 4.798882 TCACCCCAAAATGTAGTTTGTCT 58.201 39.130 4.41 0.00 36.87 3.41
829 914 5.523438 TTCACCCCAAAATGTAGTTTGTC 57.477 39.130 4.41 0.00 36.87 3.18
830 915 5.941555 TTTCACCCCAAAATGTAGTTTGT 57.058 34.783 4.41 0.00 36.87 2.83
831 916 7.548780 CCATATTTCACCCCAAAATGTAGTTTG 59.451 37.037 0.00 0.00 38.07 2.93
832 917 7.456269 TCCATATTTCACCCCAAAATGTAGTTT 59.544 33.333 0.00 0.00 0.00 2.66
833 918 6.957020 TCCATATTTCACCCCAAAATGTAGTT 59.043 34.615 0.00 0.00 0.00 2.24
834 919 6.379988 GTCCATATTTCACCCCAAAATGTAGT 59.620 38.462 0.00 0.00 0.00 2.73
835 920 6.607198 AGTCCATATTTCACCCCAAAATGTAG 59.393 38.462 0.00 0.00 0.00 2.74
836 921 6.498538 AGTCCATATTTCACCCCAAAATGTA 58.501 36.000 0.00 0.00 0.00 2.29
837 922 5.341169 AGTCCATATTTCACCCCAAAATGT 58.659 37.500 0.00 0.00 0.00 2.71
838 923 5.937975 AGTCCATATTTCACCCCAAAATG 57.062 39.130 0.00 0.00 0.00 2.32
839 924 6.263754 AGAAGTCCATATTTCACCCCAAAAT 58.736 36.000 0.00 0.00 0.00 1.82
840 925 5.650283 AGAAGTCCATATTTCACCCCAAAA 58.350 37.500 0.00 0.00 0.00 2.44
841 926 5.269554 AGAAGTCCATATTTCACCCCAAA 57.730 39.130 0.00 0.00 0.00 3.28
842 927 4.946160 AGAAGTCCATATTTCACCCCAA 57.054 40.909 0.00 0.00 0.00 4.12
856 941 3.596310 AAAGTCTAGCGGAAGAAGTCC 57.404 47.619 0.00 0.00 43.90 3.85
857 942 4.674475 CCTAAAGTCTAGCGGAAGAAGTC 58.326 47.826 0.00 0.00 0.00 3.01
858 943 3.119065 GCCTAAAGTCTAGCGGAAGAAGT 60.119 47.826 0.00 0.00 0.00 3.01
859 944 3.449632 GCCTAAAGTCTAGCGGAAGAAG 58.550 50.000 0.00 0.00 0.00 2.85
860 945 2.167900 GGCCTAAAGTCTAGCGGAAGAA 59.832 50.000 0.00 0.00 0.00 2.52
861 946 1.755380 GGCCTAAAGTCTAGCGGAAGA 59.245 52.381 0.00 0.00 0.00 2.87
862 947 1.480954 TGGCCTAAAGTCTAGCGGAAG 59.519 52.381 3.32 0.00 0.00 3.46
863 948 1.480954 CTGGCCTAAAGTCTAGCGGAA 59.519 52.381 3.32 0.00 0.00 4.30
864 949 1.112113 CTGGCCTAAAGTCTAGCGGA 58.888 55.000 3.32 0.00 0.00 5.54
865 950 0.105039 CCTGGCCTAAAGTCTAGCGG 59.895 60.000 3.32 0.00 0.00 5.52
866 951 0.530870 GCCTGGCCTAAAGTCTAGCG 60.531 60.000 7.66 0.00 0.00 4.26
867 952 0.541863 TGCCTGGCCTAAAGTCTAGC 59.458 55.000 17.53 0.00 0.00 3.42
868 953 3.274288 CTTTGCCTGGCCTAAAGTCTAG 58.726 50.000 17.53 0.00 0.00 2.43
869 954 2.618045 GCTTTGCCTGGCCTAAAGTCTA 60.618 50.000 24.12 0.15 34.69 2.59
870 955 1.888391 GCTTTGCCTGGCCTAAAGTCT 60.888 52.381 24.12 0.00 34.69 3.24
871 956 0.528017 GCTTTGCCTGGCCTAAAGTC 59.472 55.000 24.12 16.24 34.69 3.01
872 957 0.900182 GGCTTTGCCTGGCCTAAAGT 60.900 55.000 24.12 0.00 46.69 2.66
873 958 1.893062 GGCTTTGCCTGGCCTAAAG 59.107 57.895 21.09 21.09 46.69 1.85
874 959 4.111967 GGCTTTGCCTGGCCTAAA 57.888 55.556 17.53 10.04 46.69 1.85
884 969 1.244019 ACCGAAGTGATGGGCTTTGC 61.244 55.000 0.00 0.00 0.00 3.68
885 970 2.107950 TACCGAAGTGATGGGCTTTG 57.892 50.000 0.00 0.00 0.00 2.77
886 971 2.224670 TGTTACCGAAGTGATGGGCTTT 60.225 45.455 0.00 0.00 0.00 3.51
887 972 1.349688 TGTTACCGAAGTGATGGGCTT 59.650 47.619 0.00 0.00 0.00 4.35
888 973 0.981183 TGTTACCGAAGTGATGGGCT 59.019 50.000 0.00 0.00 0.00 5.19
889 974 1.816074 TTGTTACCGAAGTGATGGGC 58.184 50.000 0.00 0.00 0.00 5.36
890 975 2.161609 GCTTTGTTACCGAAGTGATGGG 59.838 50.000 0.00 0.00 34.93 4.00
891 976 2.161609 GGCTTTGTTACCGAAGTGATGG 59.838 50.000 0.00 0.00 34.93 3.51
892 977 2.161609 GGGCTTTGTTACCGAAGTGATG 59.838 50.000 0.00 0.00 34.93 3.07
893 978 2.224670 TGGGCTTTGTTACCGAAGTGAT 60.225 45.455 0.00 0.00 34.93 3.06
894 979 1.141254 TGGGCTTTGTTACCGAAGTGA 59.859 47.619 0.00 0.00 34.93 3.41
895 980 1.600023 TGGGCTTTGTTACCGAAGTG 58.400 50.000 0.00 0.00 34.93 3.16
896 981 2.227194 CTTGGGCTTTGTTACCGAAGT 58.773 47.619 0.00 0.00 37.10 3.01
897 982 2.227194 ACTTGGGCTTTGTTACCGAAG 58.773 47.619 2.71 2.71 44.64 3.79
898 983 2.351706 ACTTGGGCTTTGTTACCGAA 57.648 45.000 0.00 0.00 0.00 4.30
899 984 1.950909 CAACTTGGGCTTTGTTACCGA 59.049 47.619 0.00 0.00 0.00 4.69
900 985 1.950909 TCAACTTGGGCTTTGTTACCG 59.049 47.619 0.00 0.00 0.00 4.02
901 986 4.142026 ACTTTCAACTTGGGCTTTGTTACC 60.142 41.667 0.00 0.00 0.00 2.85
902 987 5.006153 ACTTTCAACTTGGGCTTTGTTAC 57.994 39.130 0.00 0.00 0.00 2.50
903 988 4.707448 TGACTTTCAACTTGGGCTTTGTTA 59.293 37.500 0.00 0.00 0.00 2.41
966 1051 2.175715 ACAGGTGAGAAGGGCTTTTTCT 59.824 45.455 1.71 1.00 37.59 2.52
967 1052 2.587522 ACAGGTGAGAAGGGCTTTTTC 58.412 47.619 0.00 0.00 0.00 2.29
1465 1557 9.071276 ACATAAAATATTTGATCCAATCGCTCT 57.929 29.630 0.39 0.00 0.00 4.09
1563 1657 9.667107 TTAAACACTCTTATATTTCACAGAGGG 57.333 33.333 0.00 0.00 41.80 4.30
1688 1794 1.397390 TATTTCCGGACGGAGGGAGC 61.397 60.000 13.64 0.00 46.06 4.70
1689 1795 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
1691 1797 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
1692 1798 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
1694 1800 2.613474 CCAACAAGTATTTCCGGACGGA 60.613 50.000 1.83 9.76 43.52 4.69
1695 1801 1.735571 CCAACAAGTATTTCCGGACGG 59.264 52.381 1.83 3.96 0.00 4.79
1696 1802 2.414138 GTCCAACAAGTATTTCCGGACG 59.586 50.000 1.83 0.00 32.82 4.79
1697 1803 3.404899 TGTCCAACAAGTATTTCCGGAC 58.595 45.455 1.83 0.00 41.46 4.79
1698 1804 3.773418 TGTCCAACAAGTATTTCCGGA 57.227 42.857 0.00 0.00 0.00 5.14
1699 1805 4.839668 TTTGTCCAACAAGTATTTCCGG 57.160 40.909 0.00 0.00 39.53 5.14
1700 1806 5.048364 TCCATTTGTCCAACAAGTATTTCCG 60.048 40.000 0.00 0.00 39.53 4.30
1701 1807 6.339587 TCCATTTGTCCAACAAGTATTTCC 57.660 37.500 0.00 0.00 39.53 3.13
1702 1808 7.378181 ACATCCATTTGTCCAACAAGTATTTC 58.622 34.615 0.00 0.00 39.53 2.17
1703 1809 7.301868 ACATCCATTTGTCCAACAAGTATTT 57.698 32.000 0.00 0.00 39.53 1.40
1704 1810 6.916360 ACATCCATTTGTCCAACAAGTATT 57.084 33.333 0.00 0.00 39.53 1.89
1705 1811 8.055181 AGATACATCCATTTGTCCAACAAGTAT 58.945 33.333 0.00 0.00 39.53 2.12
1706 1812 7.402054 AGATACATCCATTTGTCCAACAAGTA 58.598 34.615 0.00 0.00 39.53 2.24
1707 1813 6.248433 AGATACATCCATTTGTCCAACAAGT 58.752 36.000 0.00 0.00 39.53 3.16
1708 1814 6.764308 AGATACATCCATTTGTCCAACAAG 57.236 37.500 0.00 0.00 39.53 3.16
1709 1815 7.629157 TCTAGATACATCCATTTGTCCAACAA 58.371 34.615 0.00 0.00 36.11 2.83
1710 1816 7.194112 TCTAGATACATCCATTTGTCCAACA 57.806 36.000 0.00 0.00 0.00 3.33
1711 1817 7.716998 ACATCTAGATACATCCATTTGTCCAAC 59.283 37.037 4.54 0.00 0.00 3.77
1712 1818 7.805163 ACATCTAGATACATCCATTTGTCCAA 58.195 34.615 4.54 0.00 0.00 3.53
1713 1819 7.379059 ACATCTAGATACATCCATTTGTCCA 57.621 36.000 4.54 0.00 0.00 4.02
1714 1820 9.950496 AATACATCTAGATACATCCATTTGTCC 57.050 33.333 4.54 0.00 0.00 4.02
1753 1859 9.057089 GTCGGAGAAATGGATAAAAATAGATGT 57.943 33.333 0.00 0.00 39.69 3.06
1754 1860 9.056005 TGTCGGAGAAATGGATAAAAATAGATG 57.944 33.333 0.00 0.00 39.69 2.90
1755 1861 9.627123 TTGTCGGAGAAATGGATAAAAATAGAT 57.373 29.630 0.00 0.00 39.69 1.98
1756 1862 9.109393 CTTGTCGGAGAAATGGATAAAAATAGA 57.891 33.333 0.00 0.00 39.69 1.98
1757 1863 8.893727 ACTTGTCGGAGAAATGGATAAAAATAG 58.106 33.333 0.00 0.00 39.69 1.73
1758 1864 8.801882 ACTTGTCGGAGAAATGGATAAAAATA 57.198 30.769 0.00 0.00 39.69 1.40
1759 1865 7.703058 ACTTGTCGGAGAAATGGATAAAAAT 57.297 32.000 0.00 0.00 39.69 1.82
1760 1866 8.801882 ATACTTGTCGGAGAAATGGATAAAAA 57.198 30.769 0.00 0.00 39.69 1.94
1761 1867 8.801882 AATACTTGTCGGAGAAATGGATAAAA 57.198 30.769 0.00 0.00 39.69 1.52
1762 1868 8.801882 AAATACTTGTCGGAGAAATGGATAAA 57.198 30.769 0.00 0.00 39.69 1.40
1763 1869 8.673711 CAAAATACTTGTCGGAGAAATGGATAA 58.326 33.333 0.00 0.00 39.69 1.75
1764 1870 7.282224 CCAAAATACTTGTCGGAGAAATGGATA 59.718 37.037 0.00 0.00 39.69 2.59
1765 1871 6.095440 CCAAAATACTTGTCGGAGAAATGGAT 59.905 38.462 0.00 0.00 39.69 3.41
1766 1872 5.414454 CCAAAATACTTGTCGGAGAAATGGA 59.586 40.000 0.00 0.00 39.69 3.41
1767 1873 5.393027 CCCAAAATACTTGTCGGAGAAATGG 60.393 44.000 0.00 0.00 39.69 3.16
1768 1874 5.414454 TCCCAAAATACTTGTCGGAGAAATG 59.586 40.000 0.00 0.00 39.69 2.32
1769 1875 5.414765 GTCCCAAAATACTTGTCGGAGAAAT 59.585 40.000 0.00 0.00 39.69 2.17
1770 1876 4.758165 GTCCCAAAATACTTGTCGGAGAAA 59.242 41.667 0.00 0.00 39.69 2.52
1771 1877 4.320870 GTCCCAAAATACTTGTCGGAGAA 58.679 43.478 0.00 0.00 39.69 2.87
1772 1878 3.615592 CGTCCCAAAATACTTGTCGGAGA 60.616 47.826 0.00 0.00 0.00 3.71
1773 1879 2.671396 CGTCCCAAAATACTTGTCGGAG 59.329 50.000 0.00 0.00 0.00 4.63
1774 1880 2.613474 CCGTCCCAAAATACTTGTCGGA 60.613 50.000 0.00 0.00 38.03 4.55
1775 1881 1.735571 CCGTCCCAAAATACTTGTCGG 59.264 52.381 0.00 0.00 0.00 4.79
1776 1882 2.671396 CTCCGTCCCAAAATACTTGTCG 59.329 50.000 0.00 0.00 0.00 4.35
1777 1883 3.007635 CCTCCGTCCCAAAATACTTGTC 58.992 50.000 0.00 0.00 0.00 3.18
1778 1884 2.290705 CCCTCCGTCCCAAAATACTTGT 60.291 50.000 0.00 0.00 0.00 3.16
1779 1885 2.026636 TCCCTCCGTCCCAAAATACTTG 60.027 50.000 0.00 0.00 0.00 3.16
1780 1886 2.238898 CTCCCTCCGTCCCAAAATACTT 59.761 50.000 0.00 0.00 0.00 2.24
1781 1887 1.838077 CTCCCTCCGTCCCAAAATACT 59.162 52.381 0.00 0.00 0.00 2.12
1782 1888 1.558294 ACTCCCTCCGTCCCAAAATAC 59.442 52.381 0.00 0.00 0.00 1.89
1783 1889 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
1784 1890 1.838077 CTACTCCCTCCGTCCCAAAAT 59.162 52.381 0.00 0.00 0.00 1.82
1785 1891 1.272807 CTACTCCCTCCGTCCCAAAA 58.727 55.000 0.00 0.00 0.00 2.44
1786 1892 0.115745 ACTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
1787 1893 1.002069 TACTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
1788 1894 1.002069 TTACTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
1789 1895 1.064091 AGTTACTACTCCCTCCGTCCC 60.064 57.143 0.00 0.00 0.00 4.46
1790 1896 2.433662 AGTTACTACTCCCTCCGTCC 57.566 55.000 0.00 0.00 0.00 4.79
1791 1897 4.277921 CCATTAGTTACTACTCCCTCCGTC 59.722 50.000 0.00 0.00 35.78 4.79
1792 1898 4.213513 CCATTAGTTACTACTCCCTCCGT 58.786 47.826 0.00 0.00 35.78 4.69
1793 1899 4.213513 ACCATTAGTTACTACTCCCTCCG 58.786 47.826 0.00 0.00 35.78 4.63
1794 1900 7.240167 AGATACCATTAGTTACTACTCCCTCC 58.760 42.308 0.00 0.00 35.78 4.30
1795 1901 8.709272 AAGATACCATTAGTTACTACTCCCTC 57.291 38.462 0.00 0.00 35.78 4.30
1796 1902 8.512813 AGAAGATACCATTAGTTACTACTCCCT 58.487 37.037 0.00 0.00 35.78 4.20
1797 1903 8.709272 AGAAGATACCATTAGTTACTACTCCC 57.291 38.462 0.00 0.00 35.78 4.30
1798 1904 9.577222 AGAGAAGATACCATTAGTTACTACTCC 57.423 37.037 0.00 0.00 35.78 3.85
1847 1956 5.935789 CACTTACATTTAAGAACGGAGGGAA 59.064 40.000 5.64 0.00 37.49 3.97
1978 2087 5.349809 CCTCCGTTCCTAAATACAAGTCTC 58.650 45.833 0.00 0.00 0.00 3.36
1992 2101 1.682323 GATCAGTACTCCCTCCGTTCC 59.318 57.143 0.00 0.00 0.00 3.62
1993 2102 2.657143 AGATCAGTACTCCCTCCGTTC 58.343 52.381 0.00 0.00 0.00 3.95
2021 2130 3.487372 ACACAGCTAGGAGCATACGATA 58.513 45.455 0.64 0.00 45.56 2.92
2028 2137 2.493675 CAGACTTACACAGCTAGGAGCA 59.506 50.000 0.64 0.00 45.56 4.26
2075 2185 1.535028 TGCTAGCGACAACCAACAATG 59.465 47.619 10.77 0.00 0.00 2.82
2089 2199 1.071605 CGAACAGGACACTTGCTAGC 58.928 55.000 8.10 8.10 0.00 3.42
2108 2218 3.712881 GCTCGCGGTGTTGTCCAC 61.713 66.667 6.13 0.00 43.74 4.02
2121 2231 0.318360 TATGCGGTACCGAATGCTCG 60.318 55.000 37.62 9.06 45.02 5.03
2201 2325 1.686355 TCAACACCTTGTCCGCAAAT 58.314 45.000 0.00 0.00 33.73 2.32
2545 2670 7.535940 CACAAATGTACAAACTAACCGTTATGG 59.464 37.037 0.00 0.00 46.41 2.74
2547 2672 8.156994 ACACAAATGTACAAACTAACCGTTAT 57.843 30.769 0.00 0.00 37.26 1.89
2548 2673 7.495279 AGACACAAATGTACAAACTAACCGTTA 59.505 33.333 0.00 0.00 39.95 3.18
2549 2674 6.316890 AGACACAAATGTACAAACTAACCGTT 59.683 34.615 0.00 0.00 39.95 4.44
2551 2676 6.018588 TGAGACACAAATGTACAAACTAACCG 60.019 38.462 0.00 0.00 39.95 4.44
2552 2677 7.130269 GTGAGACACAAATGTACAAACTAACC 58.870 38.462 0.00 0.00 39.95 2.85
2553 2678 7.690228 TGTGAGACACAAATGTACAAACTAAC 58.310 34.615 0.00 0.00 41.69 2.34
2554 2679 7.851387 TGTGAGACACAAATGTACAAACTAA 57.149 32.000 0.00 0.00 41.69 2.24
2598 2723 2.763448 TGGGCCAGGTGCAATTATTAAC 59.237 45.455 0.00 0.00 43.89 2.01
2618 2743 9.084164 CATCTAAGATTTTGAATCAAAGCCTTG 57.916 33.333 22.72 16.41 34.72 3.61
2656 2781 3.403038 AGCACACCACTAAAAGCAGTAG 58.597 45.455 0.00 0.00 0.00 2.57
2668 2793 1.344763 AGAACTGGACTAGCACACCAC 59.655 52.381 0.00 0.00 0.00 4.16
2675 2800 3.373439 CAGCATTGAAGAACTGGACTAGC 59.627 47.826 0.00 0.00 0.00 3.42
2693 2818 1.677576 CAAACCTGCAGAAAGACAGCA 59.322 47.619 17.39 0.00 38.63 4.41
2695 2820 3.209410 ACTCAAACCTGCAGAAAGACAG 58.791 45.455 17.39 6.16 0.00 3.51
2697 2822 3.498777 GGTACTCAAACCTGCAGAAAGAC 59.501 47.826 17.39 1.87 36.53 3.01
2825 2950 7.012894 TCAGCCACCCTTAATAATGATAAAACG 59.987 37.037 0.00 0.00 0.00 3.60
2836 2961 5.450818 AAATGTCTCAGCCACCCTTAATA 57.549 39.130 0.00 0.00 0.00 0.98
2837 2962 4.322057 AAATGTCTCAGCCACCCTTAAT 57.678 40.909 0.00 0.00 0.00 1.40
2841 2966 2.269940 ACTAAATGTCTCAGCCACCCT 58.730 47.619 0.00 0.00 0.00 4.34
2844 2969 4.473477 ACCTACTAAATGTCTCAGCCAC 57.527 45.455 0.00 0.00 0.00 5.01
2848 2973 6.540189 CCCATGAAACCTACTAAATGTCTCAG 59.460 42.308 0.00 0.00 0.00 3.35
2853 2979 6.134535 TGTCCCATGAAACCTACTAAATGT 57.865 37.500 0.00 0.00 0.00 2.71
2883 3015 9.571810 TTAATCAATCAAGAATCAATGGAAACG 57.428 29.630 0.00 0.00 0.00 3.60
2886 3018 9.258629 AGGTTAATCAATCAAGAATCAATGGAA 57.741 29.630 0.00 0.00 0.00 3.53
2957 3097 6.212888 AGTAGGAGCAATGGCAATTAAAAG 57.787 37.500 0.00 0.00 44.61 2.27
2980 3124 3.896888 TGGAACGGAGGAAGTAGTTGTTA 59.103 43.478 0.00 0.00 0.00 2.41
2989 3133 4.760204 ACACTTATTTTGGAACGGAGGAAG 59.240 41.667 0.00 0.00 0.00 3.46
2990 3134 4.721132 ACACTTATTTTGGAACGGAGGAA 58.279 39.130 0.00 0.00 0.00 3.36
2991 3135 4.041198 AGACACTTATTTTGGAACGGAGGA 59.959 41.667 0.00 0.00 0.00 3.71
2992 3136 4.324267 AGACACTTATTTTGGAACGGAGG 58.676 43.478 0.00 0.00 0.00 4.30
2993 3137 4.994852 TGAGACACTTATTTTGGAACGGAG 59.005 41.667 0.00 0.00 0.00 4.63
2994 3138 4.963373 TGAGACACTTATTTTGGAACGGA 58.037 39.130 0.00 0.00 0.00 4.69
2995 3139 5.238650 AGTTGAGACACTTATTTTGGAACGG 59.761 40.000 0.00 0.00 0.00 4.44
2996 3140 6.300354 AGTTGAGACACTTATTTTGGAACG 57.700 37.500 0.00 0.00 0.00 3.95
2997 3141 7.973944 ACAAAGTTGAGACACTTATTTTGGAAC 59.026 33.333 0.00 0.00 35.87 3.62
2998 3142 8.062065 ACAAAGTTGAGACACTTATTTTGGAA 57.938 30.769 0.00 0.00 35.87 3.53
2999 3143 7.639113 ACAAAGTTGAGACACTTATTTTGGA 57.361 32.000 0.00 0.00 35.87 3.53
3000 3144 7.860872 GGTACAAAGTTGAGACACTTATTTTGG 59.139 37.037 0.00 0.00 35.87 3.28
3001 3145 8.402472 TGGTACAAAGTTGAGACACTTATTTTG 58.598 33.333 0.00 0.00 35.87 2.44
3002 3146 8.514330 TGGTACAAAGTTGAGACACTTATTTT 57.486 30.769 0.00 0.00 35.87 1.82
3021 3165 6.207810 GTCCCAAAATAAGTGTCATTGGTACA 59.792 38.462 0.00 0.00 39.07 2.90
3022 3166 6.617879 GTCCCAAAATAAGTGTCATTGGTAC 58.382 40.000 0.00 0.00 39.07 3.34
3023 3167 5.413213 CGTCCCAAAATAAGTGTCATTGGTA 59.587 40.000 0.00 0.00 39.07 3.25
3024 3168 4.217550 CGTCCCAAAATAAGTGTCATTGGT 59.782 41.667 0.00 0.00 39.07 3.67
3025 3169 4.380444 CCGTCCCAAAATAAGTGTCATTGG 60.380 45.833 0.00 0.00 40.14 3.16
3026 3170 4.457603 TCCGTCCCAAAATAAGTGTCATTG 59.542 41.667 0.00 0.00 0.00 2.82
3027 3171 4.658063 TCCGTCCCAAAATAAGTGTCATT 58.342 39.130 0.00 0.00 0.00 2.57
3028 3172 4.261801 CTCCGTCCCAAAATAAGTGTCAT 58.738 43.478 0.00 0.00 0.00 3.06
3029 3173 3.558321 CCTCCGTCCCAAAATAAGTGTCA 60.558 47.826 0.00 0.00 0.00 3.58
3030 3174 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
3031 3175 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
3032 3176 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
3033 3177 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
3034 3178 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
3035 3179 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
3036 3180 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
3037 3181 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
3038 3182 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
3039 3183 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
3040 3184 2.969950 CAATATACTCCCTCCGTCCCAA 59.030 50.000 0.00 0.00 0.00 4.12
3041 3185 2.178325 TCAATATACTCCCTCCGTCCCA 59.822 50.000 0.00 0.00 0.00 4.37
3042 3186 2.885616 TCAATATACTCCCTCCGTCCC 58.114 52.381 0.00 0.00 0.00 4.46
3043 3187 4.950205 TTTCAATATACTCCCTCCGTCC 57.050 45.455 0.00 0.00 0.00 4.79
3044 3188 5.855045 ACATTTCAATATACTCCCTCCGTC 58.145 41.667 0.00 0.00 0.00 4.79
3045 3189 5.888982 ACATTTCAATATACTCCCTCCGT 57.111 39.130 0.00 0.00 0.00 4.69
3046 3190 7.417612 CAAAACATTTCAATATACTCCCTCCG 58.582 38.462 0.00 0.00 0.00 4.63
3047 3191 7.068716 AGCAAAACATTTCAATATACTCCCTCC 59.931 37.037 0.00 0.00 0.00 4.30
3048 3192 8.000780 AGCAAAACATTTCAATATACTCCCTC 57.999 34.615 0.00 0.00 0.00 4.30
3049 3193 7.201732 CGAGCAAAACATTTCAATATACTCCCT 60.202 37.037 0.00 0.00 0.00 4.20
3050 3194 6.912591 CGAGCAAAACATTTCAATATACTCCC 59.087 38.462 0.00 0.00 0.00 4.30
3051 3195 7.693952 TCGAGCAAAACATTTCAATATACTCC 58.306 34.615 0.00 0.00 0.00 3.85
3080 3224 4.346730 TGGGAATTGCAGAACATGAGAAT 58.653 39.130 0.00 0.00 0.00 2.40
3111 3255 3.518303 AGGGTGATCCTAGTTTTAACGCT 59.482 43.478 0.00 0.00 45.98 5.07
3163 3307 2.546899 ACATTGTACAGGGAGCTACCA 58.453 47.619 19.90 0.00 41.20 3.25
3165 3309 5.244178 AGCTATACATTGTACAGGGAGCTAC 59.756 44.000 15.14 0.00 36.04 3.58
3228 3372 4.749245 ATAGTGCGTCTTTCAACTTTGG 57.251 40.909 0.00 0.00 0.00 3.28
3243 3389 7.526608 TGCAGTATACAACAAAAGAATAGTGC 58.473 34.615 5.50 11.63 44.29 4.40
3299 3445 1.144708 TCCTCAAAATGGCAGGTCACA 59.855 47.619 0.00 0.00 0.00 3.58
3326 3472 5.360591 ACACCAAGATTCCATAGATTCGAC 58.639 41.667 0.00 0.00 0.00 4.20
3335 3481 6.319658 GTGTCATGATAACACCAAGATTCCAT 59.680 38.462 0.00 0.00 40.90 3.41
3369 3515 5.126061 GGCATGATAACAGAAAATCCACAGT 59.874 40.000 0.00 0.00 0.00 3.55
3413 3564 9.457110 GTGTTATATTCATCACACACACAAAAA 57.543 29.630 0.00 0.00 38.57 1.94
3414 3565 7.800847 CGTGTTATATTCATCACACACACAAAA 59.199 33.333 4.49 0.00 38.61 2.44
3416 3567 6.425417 ACGTGTTATATTCATCACACACACAA 59.575 34.615 0.00 0.00 38.61 3.33
3418 3569 6.403333 ACGTGTTATATTCATCACACACAC 57.597 37.500 0.00 0.00 38.61 3.82
3420 3571 5.513849 TCGACGTGTTATATTCATCACACAC 59.486 40.000 0.00 0.00 38.61 3.82
3421 3572 5.642686 TCGACGTGTTATATTCATCACACA 58.357 37.500 0.00 0.00 38.61 3.72
3422 3573 5.331607 GCTCGACGTGTTATATTCATCACAC 60.332 44.000 0.00 0.00 36.38 3.82
3424 3575 4.976731 AGCTCGACGTGTTATATTCATCAC 59.023 41.667 0.00 0.00 0.00 3.06
3426 3577 5.284188 GCTAGCTCGACGTGTTATATTCATC 59.716 44.000 7.70 0.00 0.00 2.92
3427 3578 5.154932 GCTAGCTCGACGTGTTATATTCAT 58.845 41.667 7.70 0.00 0.00 2.57
3428 3579 4.534168 GCTAGCTCGACGTGTTATATTCA 58.466 43.478 7.70 0.00 0.00 2.57
3435 3593 2.572284 GGGCTAGCTCGACGTGTT 59.428 61.111 15.72 0.00 0.00 3.32
3456 3614 4.307432 AGATGGTTGTATATGTAGCGCAC 58.693 43.478 11.47 6.60 0.00 5.34
3528 3687 7.330262 TCTCATCTGCTTGTAAATGACATGTA 58.670 34.615 0.00 0.00 38.07 2.29
3657 3816 3.938963 GACTTTGCGTCCATATCCTTCAA 59.061 43.478 0.00 0.00 36.62 2.69
3688 3847 7.334090 AGCTATCATCACAGAGTGTAAACAAT 58.666 34.615 0.00 0.00 34.79 2.71
3718 3877 5.304686 AGTTGATGATTATTTAGGCCCGA 57.695 39.130 0.00 0.00 0.00 5.14
3927 4087 0.740737 ACACTTTCAGGTGCTTGTGC 59.259 50.000 0.00 0.00 40.52 4.57
4105 4265 6.726764 ACAGATAGTAAAGGGAGTCAAAGTCT 59.273 38.462 0.00 0.00 0.00 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.