Multiple sequence alignment - TraesCS3B01G253300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G253300 chr3B 100.000 5792 0 0 1 5792 406562998 406557207 0.000000e+00 10696.0
1 TraesCS3B01G253300 chr3B 89.209 139 10 4 5659 5792 113920859 113920721 9.980000e-38 169.0
2 TraesCS3B01G253300 chr3B 97.561 41 1 0 5200 5240 672773029 672773069 2.900000e-08 71.3
3 TraesCS3B01G253300 chr3D 92.847 2950 141 32 1 2914 313262857 313265772 0.000000e+00 4215.0
4 TraesCS3B01G253300 chr3D 95.326 813 27 5 4595 5397 313281055 313281866 0.000000e+00 1280.0
5 TraesCS3B01G253300 chr3D 96.884 674 12 2 3558 4222 313279760 313280433 0.000000e+00 1120.0
6 TraesCS3B01G253300 chr3D 96.955 624 19 0 2910 3533 313279139 313279762 0.000000e+00 1048.0
7 TraesCS3B01G253300 chr3D 96.623 385 13 0 4224 4608 313280642 313281026 1.760000e-179 640.0
8 TraesCS3B01G253300 chr3D 91.007 278 13 5 5520 5792 313281864 313282134 1.190000e-96 364.0
9 TraesCS3B01G253300 chr3D 90.066 151 9 4 5643 5792 116078961 116078816 2.130000e-44 191.0
10 TraesCS3B01G253300 chr3D 90.769 130 6 3 5661 5785 328700466 328700338 9.980000e-38 169.0
11 TraesCS3B01G253300 chr3A 96.572 1867 52 7 2358 4222 418776787 418774931 0.000000e+00 3083.0
12 TraesCS3B01G253300 chr3A 95.700 1186 32 7 4223 5397 418774720 418773543 0.000000e+00 1890.0
13 TraesCS3B01G253300 chr3A 90.491 1283 60 25 809 2057 418778521 418777267 0.000000e+00 1637.0
14 TraesCS3B01G253300 chr3A 95.349 301 14 0 2077 2377 418777197 418776897 4.060000e-131 479.0
15 TraesCS3B01G253300 chr3A 95.455 132 6 0 5396 5527 685781927 685782058 1.640000e-50 211.0
16 TraesCS3B01G253300 chr3A 93.284 134 8 1 5660 5792 418773505 418773372 4.580000e-46 196.0
17 TraesCS3B01G253300 chr3A 97.619 42 1 0 5520 5561 418773545 418773504 8.050000e-09 73.1
18 TraesCS3B01G253300 chr7A 97.656 128 3 0 5396 5523 669773942 669774069 2.720000e-53 220.0
19 TraesCS3B01G253300 chr7A 87.755 49 5 1 5193 5240 112776996 112776948 8.110000e-04 56.5
20 TraesCS3B01G253300 chr7A 87.755 49 5 1 5193 5240 112786230 112786278 8.110000e-04 56.5
21 TraesCS3B01G253300 chr7B 96.154 130 5 0 5396 5525 537460871 537461000 4.550000e-51 213.0
22 TraesCS3B01G253300 chr5D 94.286 140 7 1 5384 5523 460650667 460650529 4.550000e-51 213.0
23 TraesCS3B01G253300 chr5D 88.550 131 13 2 5664 5792 341243249 341243119 2.160000e-34 158.0
24 TraesCS3B01G253300 chr2D 94.203 138 8 0 5389 5526 619720679 619720542 1.640000e-50 211.0
25 TraesCS3B01G253300 chr2D 88.235 51 3 3 5193 5240 275951341 275951291 2.250000e-04 58.4
26 TraesCS3B01G253300 chr5A 96.094 128 5 0 5396 5523 279670548 279670421 5.880000e-50 209.0
27 TraesCS3B01G253300 chr5A 94.737 133 7 0 5395 5527 478892125 478891993 2.120000e-49 207.0
28 TraesCS3B01G253300 chr5A 90.441 136 10 3 5655 5788 442507096 442506962 5.960000e-40 176.0
29 TraesCS3B01G253300 chr2A 94.161 137 8 0 5387 5523 708949036 708949172 5.880000e-50 209.0
30 TraesCS3B01G253300 chr2A 88.235 51 5 1 5195 5244 416281061 416281111 6.270000e-05 60.2
31 TraesCS3B01G253300 chr1B 92.308 143 9 2 5396 5537 623951084 623950943 9.840000e-48 202.0
32 TraesCS3B01G253300 chr5B 89.510 143 10 3 5655 5792 400776164 400776306 5.960000e-40 176.0
33 TraesCS3B01G253300 chr6D 85.811 148 14 6 5648 5792 394589087 394589230 3.620000e-32 150.0
34 TraesCS3B01G253300 chr6B 90.741 108 9 1 5686 5792 403197689 403197796 6.050000e-30 143.0
35 TraesCS3B01G253300 chr6B 90.741 108 9 1 5686 5792 565206380 565206273 6.050000e-30 143.0
36 TraesCS3B01G253300 chr4A 84.892 139 15 3 5655 5787 158596917 158597055 1.010000e-27 135.0
37 TraesCS3B01G253300 chr4A 94.737 38 2 0 5201 5238 36374426 36374389 6.270000e-05 60.2
38 TraesCS3B01G253300 chr7D 83.562 146 19 4 5651 5792 478319372 478319228 1.310000e-26 132.0
39 TraesCS3B01G253300 chr7D 87.500 80 4 2 5659 5732 509579053 509578974 2.880000e-13 87.9
40 TraesCS3B01G253300 chr7D 93.103 58 4 0 474 531 28861096 28861153 1.030000e-12 86.1
41 TraesCS3B01G253300 chr4B 83.562 146 16 3 5648 5787 393488452 393488309 4.710000e-26 130.0
42 TraesCS3B01G253300 chr4B 91.304 46 2 2 5196 5240 21198765 21198721 1.740000e-05 62.1
43 TraesCS3B01G253300 chr1A 87.069 116 14 1 5100 5215 593284832 593284946 4.710000e-26 130.0
44 TraesCS3B01G253300 chr1A 87.129 101 11 2 5694 5792 518723340 518723240 4.740000e-21 113.0
45 TraesCS3B01G253300 chr6A 85.075 134 10 3 5658 5788 540824250 540824124 1.690000e-25 128.0
46 TraesCS3B01G253300 chr6A 84.328 134 11 3 5658 5788 540824045 540823919 7.880000e-24 122.0
47 TraesCS3B01G253300 chr1D 90.000 70 3 3 5100 5168 494470495 494470561 2.880000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G253300 chr3B 406557207 406562998 5791 True 10696.00 10696 100.000000 1 5792 1 chr3B.!!$R2 5791
1 TraesCS3B01G253300 chr3D 313262857 313265772 2915 False 4215.00 4215 92.847000 1 2914 1 chr3D.!!$F1 2913
2 TraesCS3B01G253300 chr3D 313279139 313282134 2995 False 890.40 1280 95.359000 2910 5792 5 chr3D.!!$F2 2882
3 TraesCS3B01G253300 chr3A 418773372 418778521 5149 True 1226.35 3083 94.835833 809 5792 6 chr3A.!!$R1 4983

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
117 118 0.031585 TGAAACTCGTCGGTGTCCAG 59.968 55.000 0.00 0.00 0.00 3.86 F
139 140 0.179073 CGAGGAGGCCGACATGAAAT 60.179 55.000 0.00 0.00 0.00 2.17 F
1396 1447 0.308993 GTTATTGCTCTGGGATGCGC 59.691 55.000 0.00 0.00 0.00 6.09 F
1790 1842 2.119495 GGGAGGAGATTGCTGAAGGTA 58.881 52.381 0.00 0.00 0.00 3.08 F
3055 3310 1.089920 ATGGACTCTTCGTTGCATGC 58.910 50.000 11.82 11.82 0.00 4.06 F
3721 3976 3.231965 GCAAATGCATATGATGTCGCTC 58.768 45.455 6.97 0.00 41.59 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2006 2073 1.480954 CCCAAGTACTATCCTGCACGT 59.519 52.381 0.00 0.00 0.00 4.49 R
2008 2075 1.486726 AGCCCAAGTACTATCCTGCAC 59.513 52.381 0.00 0.00 0.00 4.57 R
2305 2424 0.750911 CAAGATCCAAGCAGCCCCTC 60.751 60.000 0.00 0.00 0.00 4.30 R
3721 3976 0.170561 GCTCATCACTGCAAAGCCAG 59.829 55.000 0.00 0.00 38.78 4.85 R
4340 4814 0.923729 ATACCTCCCCATTGTGGCCA 60.924 55.000 0.00 0.00 35.79 5.36 R
5398 5926 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 0.182061 GGAGAGAAGGGCATGCATGA 59.818 55.000 30.64 0.00 0.00 3.07
39 40 2.287188 GCATGCATGACCGAATCGATTT 60.287 45.455 30.64 0.00 0.00 2.17
60 61 5.852282 TTCGATCAAGATATCCAGTGACA 57.148 39.130 0.00 0.00 0.00 3.58
75 76 0.522626 TGACATCATGCGCCAAACTG 59.477 50.000 4.18 0.00 0.00 3.16
91 92 2.285827 ACTGCGGAAATCTTCGAGAG 57.714 50.000 0.00 0.00 0.00 3.20
107 108 2.226912 CGAGAGGAAGACTGAAACTCGT 59.773 50.000 0.00 0.00 40.11 4.18
117 118 0.031585 TGAAACTCGTCGGTGTCCAG 59.968 55.000 0.00 0.00 0.00 3.86
120 121 0.526662 AACTCGTCGGTGTCCAGATC 59.473 55.000 0.00 0.00 0.00 2.75
128 129 1.439644 GTGTCCAGATCGAGGAGGC 59.560 63.158 9.83 3.51 35.42 4.70
138 139 1.218047 CGAGGAGGCCGACATGAAA 59.782 57.895 0.00 0.00 0.00 2.69
139 140 0.179073 CGAGGAGGCCGACATGAAAT 60.179 55.000 0.00 0.00 0.00 2.17
147 148 4.526970 AGGCCGACATGAAATAAATCAGT 58.473 39.130 0.00 0.00 31.76 3.41
150 151 5.504665 GGCCGACATGAAATAAATCAGTGAG 60.505 44.000 0.00 0.00 31.76 3.51
169 170 1.411977 AGATGGTGCTCGAAGATCAGG 59.588 52.381 0.00 0.00 31.41 3.86
170 171 0.467384 ATGGTGCTCGAAGATCAGGG 59.533 55.000 0.00 0.00 31.41 4.45
187 188 2.361104 GGGGCCAGAACATCGCAA 60.361 61.111 4.39 0.00 0.00 4.85
196 197 0.951558 GAACATCGCAACCACCAACT 59.048 50.000 0.00 0.00 0.00 3.16
223 224 1.669115 CACGGTGAACCAGCCTCTG 60.669 63.158 0.74 0.00 35.14 3.35
233 234 0.835941 CCAGCCTCTGCACTAATCCT 59.164 55.000 0.00 0.00 41.13 3.24
236 237 0.878086 GCCTCTGCACTAATCCTCGC 60.878 60.000 0.00 0.00 37.47 5.03
317 318 2.365635 ACCCCCTGGTCAGATCCG 60.366 66.667 0.00 0.00 43.06 4.18
321 322 2.735772 CCCTGGTCAGATCCGTGGG 61.736 68.421 0.00 0.00 37.46 4.61
325 326 2.050350 GGTCAGATCCGTGGGTCGA 61.050 63.158 0.00 0.00 42.86 4.20
346 347 2.510238 CTCCAAAGAGCCCGAGCG 60.510 66.667 0.00 0.00 46.67 5.03
375 376 1.987855 TCCCTACCCACAAGCTCCG 60.988 63.158 0.00 0.00 0.00 4.63
437 438 4.065110 GTCAGGGTGCAGACCAAC 57.935 61.111 9.83 4.15 45.25 3.77
440 441 1.003355 CAGGGTGCAGACCAACGAT 60.003 57.895 9.83 0.00 45.25 3.73
443 444 0.392998 GGGTGCAGACCAACGATGAT 60.393 55.000 2.54 0.00 45.25 2.45
454 455 4.574892 ACCAACGATGATACATGACACAA 58.425 39.130 0.00 0.00 0.00 3.33
458 459 4.565022 ACGATGATACATGACACAACACA 58.435 39.130 0.00 0.00 0.00 3.72
469 470 0.976641 CACAACACAGGGAGGAGCTA 59.023 55.000 0.00 0.00 0.00 3.32
470 471 1.347707 CACAACACAGGGAGGAGCTAA 59.652 52.381 0.00 0.00 0.00 3.09
471 472 2.026822 CACAACACAGGGAGGAGCTAAT 60.027 50.000 0.00 0.00 0.00 1.73
478 479 1.709994 GGGAGGAGCTAATGGTGGGG 61.710 65.000 0.00 0.00 0.00 4.96
492 493 1.710816 GTGGGGACATAGGAGAGGAG 58.289 60.000 0.00 0.00 46.14 3.69
506 507 2.364448 GGAGGAGGAAGGAGGCGT 60.364 66.667 0.00 0.00 0.00 5.68
555 574 2.526628 GCGAGGGGAGGGGATCTA 59.473 66.667 0.00 0.00 0.00 1.98
566 585 2.070650 GGGATCTAAGGTGGGCGGT 61.071 63.158 0.00 0.00 0.00 5.68
570 589 0.689745 ATCTAAGGTGGGCGGTGCTA 60.690 55.000 0.00 0.00 0.00 3.49
622 642 2.747446 TGTAGAATTTTCCTTGGCGAGC 59.253 45.455 0.00 0.00 0.00 5.03
628 648 1.453155 TTTCCTTGGCGAGCAGAATC 58.547 50.000 0.00 0.00 0.00 2.52
645 665 4.636249 AGAATCTGTTCTGCGATATTCCC 58.364 43.478 0.00 0.00 42.97 3.97
663 683 0.462759 CCAATCTTCCTCGCACTCCC 60.463 60.000 0.00 0.00 0.00 4.30
905 925 1.666872 CTCGTCCCCGAACACAACC 60.667 63.158 0.00 0.00 43.69 3.77
983 1017 0.733150 CGAGCACGACATCTCAGGTA 59.267 55.000 0.00 0.00 42.66 3.08
1147 1181 1.152030 TCCTCCAAGTGGCAGGTCT 60.152 57.895 12.67 0.00 34.44 3.85
1224 1269 1.009389 CACCCAGCGTCTCGTTCTTC 61.009 60.000 0.00 0.00 0.00 2.87
1302 1351 4.574599 AGTGCAAGTTTAGAGCCTTTTG 57.425 40.909 0.00 0.00 0.00 2.44
1346 1397 3.181497 GCAATACGTCAATCATGTGGCTT 60.181 43.478 0.00 0.00 0.00 4.35
1396 1447 0.308993 GTTATTGCTCTGGGATGCGC 59.691 55.000 0.00 0.00 0.00 6.09
1510 1561 6.908825 TGGTTCTATTTGTAAACATCAGTGC 58.091 36.000 0.00 0.00 0.00 4.40
1595 1647 8.693625 TGGAACAGCATATATCTCATATCTCTG 58.306 37.037 0.00 0.00 0.00 3.35
1790 1842 2.119495 GGGAGGAGATTGCTGAAGGTA 58.881 52.381 0.00 0.00 0.00 3.08
1850 1910 5.244402 ACAATCTTGCACTTTCATGATGGAA 59.756 36.000 0.00 0.00 33.06 3.53
1895 1955 4.114015 TGTACTGAGAAGTCTGAAGGGA 57.886 45.455 0.00 0.00 0.00 4.20
1947 2008 5.327732 ACCACTCACCAATCATTGATCTTT 58.672 37.500 0.00 0.00 0.00 2.52
2014 2081 7.964559 CCATGAAAATATGAATATACGTGCAGG 59.035 37.037 4.53 4.53 0.00 4.85
2305 2424 1.453155 ACTGGCCTTTATGCGACTTG 58.547 50.000 3.32 0.00 0.00 3.16
2616 2865 7.555965 ACAACCTTTAAGCTTCATTGTTTTCT 58.444 30.769 0.00 0.00 0.00 2.52
2843 3092 1.922447 TGGCAGTTCCCACATCCTAAT 59.078 47.619 0.00 0.00 0.00 1.73
3024 3279 9.065871 CAAGTTCTATTCTTATTTTCCAAAGCG 57.934 33.333 0.00 0.00 0.00 4.68
3055 3310 1.089920 ATGGACTCTTCGTTGCATGC 58.910 50.000 11.82 11.82 0.00 4.06
3204 3459 8.412456 TCTAAATTTTGCTCTCATTTGTCAACA 58.588 29.630 0.00 0.00 0.00 3.33
3209 3464 6.395426 TTGCTCTCATTTGTCAACATTCTT 57.605 33.333 0.00 0.00 0.00 2.52
3330 3585 5.613358 ATCTGTTTTGGAAAACTAGAGCG 57.387 39.130 14.42 0.00 46.37 5.03
3376 3631 6.924913 TCAGGCAGAGCTACAGAATATTAT 57.075 37.500 0.00 0.00 0.00 1.28
3542 3797 7.254852 GTGGACTGTTTTCATTGTTTCTTGTA 58.745 34.615 0.00 0.00 0.00 2.41
3543 3798 7.920682 GTGGACTGTTTTCATTGTTTCTTGTAT 59.079 33.333 0.00 0.00 0.00 2.29
3664 3919 5.734720 CTGTTATTAGGGTGATGACTGTGT 58.265 41.667 0.00 0.00 0.00 3.72
3721 3976 3.231965 GCAAATGCATATGATGTCGCTC 58.768 45.455 6.97 0.00 41.59 5.03
3989 4245 5.220662 CCCACTATGAATAGCTTGTTCGTTG 60.221 44.000 10.40 10.76 33.68 4.10
4340 4814 4.040952 ACAGAGAATGTTGCTGTACTTCCT 59.959 41.667 0.00 0.00 39.96 3.36
4414 4888 5.417811 TCTTGTGTTAACGTGTCCTTTACA 58.582 37.500 0.26 0.00 35.06 2.41
4540 5014 7.170393 AGAAAGCTTTAACTGTTGTTTTCCT 57.830 32.000 12.68 0.00 37.59 3.36
4638 5155 5.557891 ATTACTCAGCTCACTTGCATTTC 57.442 39.130 0.00 0.00 34.99 2.17
4644 5161 3.190744 CAGCTCACTTGCATTTCACATCT 59.809 43.478 0.00 0.00 34.99 2.90
4656 5173 5.049818 GCATTTCACATCTGACTAGGTATGC 60.050 44.000 0.00 0.00 0.00 3.14
4835 5353 1.202675 CCCAAATTGCAGGCACAAAGT 60.203 47.619 0.00 0.00 32.27 2.66
4849 5367 3.740832 GCACAAAGTGAACTTAAATGCCC 59.259 43.478 12.07 0.00 35.23 5.36
5203 5728 3.242706 TGTTCGGTGTCGTATATACCACG 60.243 47.826 7.30 0.00 39.28 4.94
5204 5729 1.264020 TCGGTGTCGTATATACCACGC 59.736 52.381 13.80 13.80 39.28 5.34
5400 5928 8.794335 AACCTTTTCTGAATAAGATGTACTCC 57.206 34.615 11.40 0.00 33.93 3.85
5401 5929 7.339482 ACCTTTTCTGAATAAGATGTACTCCC 58.661 38.462 11.40 0.00 33.93 4.30
5402 5930 7.182930 ACCTTTTCTGAATAAGATGTACTCCCT 59.817 37.037 11.40 0.00 33.93 4.20
5403 5931 7.713073 CCTTTTCTGAATAAGATGTACTCCCTC 59.287 40.741 11.40 0.00 33.93 4.30
5404 5932 6.732896 TTCTGAATAAGATGTACTCCCTCC 57.267 41.667 0.00 0.00 33.93 4.30
5405 5933 4.827835 TCTGAATAAGATGTACTCCCTCCG 59.172 45.833 0.00 0.00 0.00 4.63
5406 5934 4.543689 TGAATAAGATGTACTCCCTCCGT 58.456 43.478 0.00 0.00 0.00 4.69
5407 5935 4.583489 TGAATAAGATGTACTCCCTCCGTC 59.417 45.833 0.00 0.00 0.00 4.79
5408 5936 1.777941 AAGATGTACTCCCTCCGTCC 58.222 55.000 0.00 0.00 0.00 4.79
5409 5937 0.465824 AGATGTACTCCCTCCGTCCG 60.466 60.000 0.00 0.00 0.00 4.79
5410 5938 1.453762 GATGTACTCCCTCCGTCCGG 61.454 65.000 0.00 0.00 0.00 5.14
5411 5939 1.929860 ATGTACTCCCTCCGTCCGGA 61.930 60.000 0.00 0.00 42.90 5.14
5412 5940 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
5413 5941 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
5414 5942 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
5415 5943 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
5416 5944 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
5417 5945 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
5418 5946 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
5419 5947 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
5420 5948 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
5421 5949 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
5422 5950 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
5423 5951 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
5424 5952 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
5425 5953 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
5426 5954 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
5427 5955 6.918800 CCGTCCGGAAATACTTGTCATCAAG 61.919 48.000 5.23 6.44 45.65 3.02
5428 5956 8.994207 CCGTCCGGAAATACTTGTCATCAAGA 62.994 46.154 5.23 0.31 44.37 3.02
5477 6005 9.708092 GATGTATTTTAGTTCTAGATACACCCC 57.292 37.037 14.34 8.08 36.40 4.95
5478 6006 8.849543 TGTATTTTAGTTCTAGATACACCCCT 57.150 34.615 0.00 0.00 30.60 4.79
5479 6007 9.275572 TGTATTTTAGTTCTAGATACACCCCTT 57.724 33.333 0.00 0.00 30.60 3.95
5480 6008 9.761504 GTATTTTAGTTCTAGATACACCCCTTC 57.238 37.037 0.00 0.00 0.00 3.46
5481 6009 8.625467 ATTTTAGTTCTAGATACACCCCTTCT 57.375 34.615 0.00 0.00 0.00 2.85
5482 6010 8.445361 TTTTAGTTCTAGATACACCCCTTCTT 57.555 34.615 0.00 0.00 0.00 2.52
5483 6011 9.551339 TTTTAGTTCTAGATACACCCCTTCTTA 57.449 33.333 0.00 0.00 0.00 2.10
5484 6012 9.725206 TTTAGTTCTAGATACACCCCTTCTTAT 57.275 33.333 0.00 0.00 0.00 1.73
5485 6013 7.842887 AGTTCTAGATACACCCCTTCTTATC 57.157 40.000 0.00 0.00 0.00 1.75
5486 6014 6.783482 AGTTCTAGATACACCCCTTCTTATCC 59.217 42.308 0.00 0.00 0.00 2.59
5487 6015 6.289482 TCTAGATACACCCCTTCTTATCCA 57.711 41.667 0.00 0.00 0.00 3.41
5488 6016 6.875469 TCTAGATACACCCCTTCTTATCCAT 58.125 40.000 0.00 0.00 0.00 3.41
5489 6017 7.313731 TCTAGATACACCCCTTCTTATCCATT 58.686 38.462 0.00 0.00 0.00 3.16
5490 6018 6.848562 AGATACACCCCTTCTTATCCATTT 57.151 37.500 0.00 0.00 0.00 2.32
5491 6019 7.226059 AGATACACCCCTTCTTATCCATTTT 57.774 36.000 0.00 0.00 0.00 1.82
5492 6020 7.062957 AGATACACCCCTTCTTATCCATTTTG 58.937 38.462 0.00 0.00 0.00 2.44
5493 6021 5.269554 ACACCCCTTCTTATCCATTTTGA 57.730 39.130 0.00 0.00 0.00 2.69
5494 6022 5.842339 ACACCCCTTCTTATCCATTTTGAT 58.158 37.500 0.00 0.00 0.00 2.57
5495 6023 5.658190 ACACCCCTTCTTATCCATTTTGATG 59.342 40.000 0.00 0.00 0.00 3.07
5496 6024 5.893255 CACCCCTTCTTATCCATTTTGATGA 59.107 40.000 0.00 0.00 0.00 2.92
5497 6025 5.893824 ACCCCTTCTTATCCATTTTGATGAC 59.106 40.000 0.00 0.00 0.00 3.06
5498 6026 5.893255 CCCCTTCTTATCCATTTTGATGACA 59.107 40.000 0.00 0.00 0.00 3.58
5499 6027 6.380846 CCCCTTCTTATCCATTTTGATGACAA 59.619 38.462 0.00 0.00 0.00 3.18
5500 6028 7.417116 CCCCTTCTTATCCATTTTGATGACAAG 60.417 40.741 0.00 0.00 37.32 3.16
5501 6029 7.123247 CCCTTCTTATCCATTTTGATGACAAGT 59.877 37.037 0.00 0.00 37.32 3.16
5502 6030 9.177608 CCTTCTTATCCATTTTGATGACAAGTA 57.822 33.333 0.00 0.00 37.32 2.24
5508 6036 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
5509 6037 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
5510 6038 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
5511 6039 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
5512 6040 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
5513 6041 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
5514 6042 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
5515 6043 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
5516 6044 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
5517 6045 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
5518 6046 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
5519 6047 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
5520 6048 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
5521 6049 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
5564 6092 5.529430 TGTTTGTGTACTCATTTGAATCCGT 59.471 36.000 0.00 0.00 0.00 4.69
5581 6109 6.533723 TGAATCCGTGTGTAGTTCATATCAAC 59.466 38.462 0.00 0.00 0.00 3.18
5632 6160 4.729227 TGTGAACAGAGTGAACAGTACA 57.271 40.909 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 2.203126 GCATGCCCTTCTCTCCGG 60.203 66.667 6.36 0.00 0.00 5.14
20 21 3.885484 GAAATCGATTCGGTCATGCAT 57.115 42.857 11.83 0.00 0.00 3.96
39 40 5.536161 TGATGTCACTGGATATCTTGATCGA 59.464 40.000 2.05 0.00 40.97 3.59
75 76 2.295253 TTCCTCTCGAAGATTTCCGC 57.705 50.000 0.00 0.00 33.89 5.54
91 92 1.000496 ACCGACGAGTTTCAGTCTTCC 60.000 52.381 0.00 0.00 35.38 3.46
98 99 0.031585 CTGGACACCGACGAGTTTCA 59.968 55.000 0.00 0.00 0.00 2.69
107 108 0.748367 CTCCTCGATCTGGACACCGA 60.748 60.000 0.83 0.00 0.00 4.69
117 118 1.006805 CATGTCGGCCTCCTCGATC 60.007 63.158 0.00 0.00 38.93 3.69
120 121 0.179073 ATTTCATGTCGGCCTCCTCG 60.179 55.000 0.00 0.00 0.00 4.63
128 129 6.908870 TCTCACTGATTTATTTCATGTCGG 57.091 37.500 0.00 0.00 0.00 4.79
138 139 4.100035 TCGAGCACCATCTCACTGATTTAT 59.900 41.667 0.00 0.00 32.05 1.40
139 140 3.447229 TCGAGCACCATCTCACTGATTTA 59.553 43.478 0.00 0.00 32.05 1.40
147 148 2.100418 CTGATCTTCGAGCACCATCTCA 59.900 50.000 0.00 0.00 33.41 3.27
150 151 1.539929 CCCTGATCTTCGAGCACCATC 60.540 57.143 0.00 0.00 0.00 3.51
169 170 3.936772 TTGCGATGTTCTGGCCCCC 62.937 63.158 0.00 0.00 0.00 5.40
170 171 2.361104 TTGCGATGTTCTGGCCCC 60.361 61.111 0.00 0.00 0.00 5.80
187 188 1.370064 GGCACGACTAGTTGGTGGT 59.630 57.895 22.08 4.93 32.42 4.16
196 197 1.007038 GTTCACCGTGGCACGACTA 60.007 57.895 38.91 20.94 46.05 2.59
249 250 4.643733 GGATCTGATCCGTGAGCG 57.356 61.111 20.20 0.00 40.13 5.03
317 318 3.524648 TTTGGAGCCGTCGACCCAC 62.525 63.158 10.58 0.00 0.00 4.61
321 322 4.170723 CTCTTTGGAGCCGTCGAC 57.829 61.111 5.18 5.18 32.43 4.20
346 347 2.582978 GTAGGGACCCCAGCGTTC 59.417 66.667 7.00 0.00 38.92 3.95
366 367 1.179814 AACTCGTCCTCGGAGCTTGT 61.180 55.000 0.00 0.00 37.69 3.16
390 391 4.308458 TTGCGGTGGTGGTCCTCG 62.308 66.667 0.00 0.00 35.51 4.63
391 392 2.358737 CTTGCGGTGGTGGTCCTC 60.359 66.667 0.00 0.00 34.23 3.71
413 414 2.842462 TGCACCCTGACCTCGTGT 60.842 61.111 0.00 0.00 0.00 4.49
434 435 5.107143 TGTGTTGTGTCATGTATCATCGTTG 60.107 40.000 0.00 0.00 0.00 4.10
436 437 4.565022 TGTGTTGTGTCATGTATCATCGT 58.435 39.130 0.00 0.00 0.00 3.73
437 438 4.033243 CCTGTGTTGTGTCATGTATCATCG 59.967 45.833 0.00 0.00 0.00 3.84
440 441 3.326297 TCCCTGTGTTGTGTCATGTATCA 59.674 43.478 0.00 0.00 0.00 2.15
443 444 2.038426 CCTCCCTGTGTTGTGTCATGTA 59.962 50.000 0.00 0.00 0.00 2.29
454 455 1.207791 CCATTAGCTCCTCCCTGTGT 58.792 55.000 0.00 0.00 0.00 3.72
458 459 0.695803 CCCACCATTAGCTCCTCCCT 60.696 60.000 0.00 0.00 0.00 4.20
469 470 2.412591 CTCTCCTATGTCCCCACCATT 58.587 52.381 0.00 0.00 0.00 3.16
470 471 1.415126 CCTCTCCTATGTCCCCACCAT 60.415 57.143 0.00 0.00 0.00 3.55
471 472 0.031111 CCTCTCCTATGTCCCCACCA 60.031 60.000 0.00 0.00 0.00 4.17
478 479 3.496331 CTTCCTCCTCCTCTCCTATGTC 58.504 54.545 0.00 0.00 0.00 3.06
492 493 4.475135 GCCACGCCTCCTTCCTCC 62.475 72.222 0.00 0.00 0.00 4.30
555 574 2.351276 CTTAGCACCGCCCACCTT 59.649 61.111 0.00 0.00 0.00 3.50
612 632 0.392193 ACAGATTCTGCTCGCCAAGG 60.392 55.000 13.64 0.00 34.37 3.61
614 634 1.002430 AGAACAGATTCTGCTCGCCAA 59.998 47.619 13.64 0.00 43.86 4.52
616 636 3.450028 AGAACAGATTCTGCTCGCC 57.550 52.632 13.64 0.00 43.86 5.54
628 648 4.384056 AGATTGGGAATATCGCAGAACAG 58.616 43.478 0.00 0.00 43.58 3.16
636 656 2.996621 GCGAGGAAGATTGGGAATATCG 59.003 50.000 0.00 0.00 0.00 2.92
645 665 0.250234 TGGGAGTGCGAGGAAGATTG 59.750 55.000 0.00 0.00 0.00 2.67
779 799 4.433615 AGAACATCGAATGTACTCGCAAT 58.566 39.130 0.00 0.00 44.07 3.56
957 991 2.829577 GATGTCGTGCTCGTCGTCGT 62.830 60.000 8.17 0.00 38.33 4.34
983 1017 1.619669 ATTCCCGCCTCCCTTCCTT 60.620 57.895 0.00 0.00 0.00 3.36
1147 1181 3.249189 GTGGTGGGCTGGGAGACA 61.249 66.667 0.00 0.00 0.00 3.41
1302 1351 2.154007 GCACGTAGAATCGAATGCTAGC 59.846 50.000 8.10 8.10 32.68 3.42
1368 1419 3.694566 CCCAGAGCAATAACTTGGTAACC 59.305 47.826 0.00 0.00 42.91 2.85
1396 1447 7.011016 TGACATATCCACACGCAAACTAATTAG 59.989 37.037 11.05 11.05 0.00 1.73
1466 1517 2.259266 TTCAACAGAGCATGTGCAGA 57.741 45.000 7.83 0.00 43.00 4.26
1510 1561 1.665679 AGTAGCAATTTCACATCGGCG 59.334 47.619 0.00 0.00 0.00 6.46
1595 1647 6.317893 ACCAAAAGGATGATACGATGGTTAAC 59.682 38.462 0.00 0.00 36.57 2.01
1895 1955 8.141909 CCAAATTCATCTCATCAATGCATAAGT 58.858 33.333 0.00 0.00 0.00 2.24
1947 2008 8.603242 AAAGAAGACGAAGAAGCAACTAAATA 57.397 30.769 0.00 0.00 0.00 1.40
1958 2019 6.570672 TGAGCTAGTAAAGAAGACGAAGAA 57.429 37.500 0.00 0.00 0.00 2.52
2000 2067 6.807230 CCAAGTACTATCCTGCACGTATATTC 59.193 42.308 0.00 0.00 0.00 1.75
2001 2068 6.295123 CCCAAGTACTATCCTGCACGTATATT 60.295 42.308 0.00 0.00 0.00 1.28
2003 2070 4.521639 CCCAAGTACTATCCTGCACGTATA 59.478 45.833 0.00 0.00 0.00 1.47
2004 2071 3.321111 CCCAAGTACTATCCTGCACGTAT 59.679 47.826 0.00 0.00 0.00 3.06
2005 2072 2.691526 CCCAAGTACTATCCTGCACGTA 59.308 50.000 0.00 0.00 0.00 3.57
2006 2073 1.480954 CCCAAGTACTATCCTGCACGT 59.519 52.381 0.00 0.00 0.00 4.49
2007 2074 1.806623 GCCCAAGTACTATCCTGCACG 60.807 57.143 0.00 0.00 0.00 5.34
2008 2075 1.486726 AGCCCAAGTACTATCCTGCAC 59.513 52.381 0.00 0.00 0.00 4.57
2014 2081 3.444388 CGGATCCTAGCCCAAGTACTATC 59.556 52.174 10.75 0.00 0.00 2.08
2305 2424 0.750911 CAAGATCCAAGCAGCCCCTC 60.751 60.000 0.00 0.00 0.00 4.30
2531 2780 2.981859 ATACGTTAGCCAAGACTGGG 57.018 50.000 0.00 0.00 43.74 4.45
2616 2865 6.381133 TGATGTATAAGAAGTCCAGAGCTGAA 59.619 38.462 0.00 0.00 0.00 3.02
2673 2922 5.766222 ACAAGCGTACTAGGTATATTTCCG 58.234 41.667 0.00 0.00 0.00 4.30
2684 2933 3.254060 ACAGCAATGACAAGCGTACTAG 58.746 45.455 0.00 0.00 35.48 2.57
2843 3092 2.757868 AGCAGCAAACCAAACTGTACAA 59.242 40.909 0.00 0.00 33.87 2.41
2892 3147 4.024387 TGAAACTGCTGGTTTACGAATCAC 60.024 41.667 8.01 0.00 46.77 3.06
3024 3279 4.859798 CGAAGAGTCCATAACAGTGAGAAC 59.140 45.833 0.00 0.00 0.00 3.01
3055 3310 8.469902 CAAGAGTTACTACTAAATAATGACGCG 58.530 37.037 3.53 3.53 33.84 6.01
3228 3483 6.543430 AGAGATTCATCTGCAGTAGAAAGT 57.457 37.500 21.22 14.09 39.30 2.66
3542 3797 8.757982 AGTTCTATAATTTCCATGTTGAGCAT 57.242 30.769 0.00 0.00 38.60 3.79
3543 3798 8.579850 AAGTTCTATAATTTCCATGTTGAGCA 57.420 30.769 0.00 0.00 0.00 4.26
3664 3919 9.645059 CTCTTTGTAGACTTCATCACTTCAATA 57.355 33.333 0.00 0.00 0.00 1.90
3721 3976 0.170561 GCTCATCACTGCAAAGCCAG 59.829 55.000 0.00 0.00 38.78 4.85
3989 4245 3.328931 TGGAGCTAATCATCTTGGGGATC 59.671 47.826 0.00 0.00 31.27 3.36
4098 4362 2.232208 GGTTTCAGGGAGAGCAAATTGG 59.768 50.000 0.00 0.00 0.00 3.16
4265 4739 2.224281 GCCTACATGCCACACTGCTATA 60.224 50.000 0.00 0.00 0.00 1.31
4268 4742 1.377725 GCCTACATGCCACACTGCT 60.378 57.895 0.00 0.00 0.00 4.24
4340 4814 0.923729 ATACCTCCCCATTGTGGCCA 60.924 55.000 0.00 0.00 35.79 5.36
4414 4888 8.511126 AGGGATTATAAATACCACCATGTTCTT 58.489 33.333 3.77 0.00 0.00 2.52
4455 4929 7.414222 TTCCTCTATTACGTACCAGATTTGT 57.586 36.000 0.00 0.00 0.00 2.83
4540 5014 1.533625 CCAAGAAAATGAGACGGGCA 58.466 50.000 0.00 0.00 0.00 5.36
4638 5155 4.122776 GTTGGCATACCTAGTCAGATGTG 58.877 47.826 0.00 0.00 36.63 3.21
4644 5161 2.827755 TCCAGTTGGCATACCTAGTCA 58.172 47.619 0.00 0.00 36.63 3.41
4656 5173 1.477553 CCATGTCCCATTCCAGTTGG 58.522 55.000 0.00 0.00 0.00 3.77
4835 5353 6.900194 AGAGCTATTAGGGCATTTAAGTTCA 58.100 36.000 0.00 0.00 0.00 3.18
5071 5589 7.281549 CAGATACATCATCAACTGTGATCCAAA 59.718 37.037 0.00 0.00 42.88 3.28
5072 5590 6.764560 CAGATACATCATCAACTGTGATCCAA 59.235 38.462 0.00 0.00 42.88 3.53
5076 5594 7.563020 AGAACAGATACATCATCAACTGTGAT 58.437 34.615 0.00 0.00 45.80 3.06
5203 5728 4.246458 GACGGAGGGAGTATTTCATATGC 58.754 47.826 0.00 0.00 0.00 3.14
5204 5729 4.322801 GGGACGGAGGGAGTATTTCATATG 60.323 50.000 0.00 0.00 0.00 1.78
5397 5925 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
5398 5926 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
5399 5927 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
5400 5928 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
5401 5929 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
5402 5930 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
5403 5931 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
5404 5932 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
5405 5933 5.470845 CTTGATGACAAGTATTTCCGGAC 57.529 43.478 1.83 0.00 45.73 4.79
5451 5979 9.708092 GGGGTGTATCTAGAACTAAAATACATC 57.292 37.037 0.00 13.73 35.81 3.06
5452 5980 9.448587 AGGGGTGTATCTAGAACTAAAATACAT 57.551 33.333 0.00 3.35 35.81 2.29
5453 5981 8.849543 AGGGGTGTATCTAGAACTAAAATACA 57.150 34.615 0.00 0.00 32.07 2.29
5454 5982 9.761504 GAAGGGGTGTATCTAGAACTAAAATAC 57.238 37.037 0.00 0.00 0.00 1.89
5455 5983 9.725206 AGAAGGGGTGTATCTAGAACTAAAATA 57.275 33.333 0.00 0.00 0.00 1.40
5456 5984 8.625467 AGAAGGGGTGTATCTAGAACTAAAAT 57.375 34.615 0.00 0.00 0.00 1.82
5457 5985 8.445361 AAGAAGGGGTGTATCTAGAACTAAAA 57.555 34.615 0.00 0.00 0.00 1.52
5458 5986 9.725206 ATAAGAAGGGGTGTATCTAGAACTAAA 57.275 33.333 0.00 0.00 0.00 1.85
5459 5987 9.364653 GATAAGAAGGGGTGTATCTAGAACTAA 57.635 37.037 0.00 0.00 0.00 2.24
5460 5988 7.949006 GGATAAGAAGGGGTGTATCTAGAACTA 59.051 40.741 0.00 0.00 0.00 2.24
5461 5989 6.783482 GGATAAGAAGGGGTGTATCTAGAACT 59.217 42.308 0.00 0.00 0.00 3.01
5462 5990 6.553852 TGGATAAGAAGGGGTGTATCTAGAAC 59.446 42.308 0.00 0.00 0.00 3.01
5463 5991 6.689561 TGGATAAGAAGGGGTGTATCTAGAA 58.310 40.000 0.00 0.00 0.00 2.10
5464 5992 6.289482 TGGATAAGAAGGGGTGTATCTAGA 57.711 41.667 0.00 0.00 0.00 2.43
5465 5993 7.560796 AATGGATAAGAAGGGGTGTATCTAG 57.439 40.000 0.00 0.00 0.00 2.43
5466 5994 7.947782 AAATGGATAAGAAGGGGTGTATCTA 57.052 36.000 0.00 0.00 0.00 1.98
5467 5995 6.848562 AAATGGATAAGAAGGGGTGTATCT 57.151 37.500 0.00 0.00 0.00 1.98
5468 5996 7.060421 TCAAAATGGATAAGAAGGGGTGTATC 58.940 38.462 0.00 0.00 0.00 2.24
5469 5997 6.980577 TCAAAATGGATAAGAAGGGGTGTAT 58.019 36.000 0.00 0.00 0.00 2.29
5470 5998 6.395780 TCAAAATGGATAAGAAGGGGTGTA 57.604 37.500 0.00 0.00 0.00 2.90
5471 5999 5.269554 TCAAAATGGATAAGAAGGGGTGT 57.730 39.130 0.00 0.00 0.00 4.16
5472 6000 5.893255 TCATCAAAATGGATAAGAAGGGGTG 59.107 40.000 0.00 0.00 33.42 4.61
5473 6001 5.893824 GTCATCAAAATGGATAAGAAGGGGT 59.106 40.000 0.00 0.00 33.42 4.95
5474 6002 5.893255 TGTCATCAAAATGGATAAGAAGGGG 59.107 40.000 0.00 0.00 33.42 4.79
5475 6003 7.123247 ACTTGTCATCAAAATGGATAAGAAGGG 59.877 37.037 0.00 0.00 33.42 3.95
5476 6004 8.059798 ACTTGTCATCAAAATGGATAAGAAGG 57.940 34.615 0.00 0.00 33.42 3.46
5483 6011 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
5484 6012 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
5485 6013 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
5486 6014 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
5487 6015 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
5488 6016 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
5489 6017 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
5490 6018 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
5491 6019 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
5492 6020 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
5493 6021 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
5494 6022 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
5495 6023 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
5496 6024 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
5497 6025 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
5498 6026 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
5499 6027 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
5500 6028 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
5501 6029 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
5502 6030 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
5503 6031 1.856629 ATACTCCCTCCGTCCGAAAA 58.143 50.000 0.00 0.00 0.00 2.29
5504 6032 2.734755 TATACTCCCTCCGTCCGAAA 57.265 50.000 0.00 0.00 0.00 3.46
5505 6033 2.965671 ATATACTCCCTCCGTCCGAA 57.034 50.000 0.00 0.00 0.00 4.30
5506 6034 3.176411 TCTATATACTCCCTCCGTCCGA 58.824 50.000 0.00 0.00 0.00 4.55
5507 6035 3.623906 TCTATATACTCCCTCCGTCCG 57.376 52.381 0.00 0.00 0.00 4.79
5508 6036 5.999044 TGTATCTATATACTCCCTCCGTCC 58.001 45.833 0.58 0.00 39.05 4.79
5509 6037 8.522542 AAATGTATCTATATACTCCCTCCGTC 57.477 38.462 0.58 0.00 39.05 4.79
5510 6038 8.896722 AAAATGTATCTATATACTCCCTCCGT 57.103 34.615 0.58 0.00 39.05 4.69
5547 6075 5.867716 ACTACACACGGATTCAAATGAGTAC 59.132 40.000 0.00 0.00 0.00 2.73
5564 6092 9.898152 TTTGGATATGTTGATATGAACTACACA 57.102 29.630 6.61 0.00 0.00 3.72
5607 6135 6.597672 TGTACTGTTCACTCTGTTCACAAATT 59.402 34.615 0.00 0.00 0.00 1.82
5618 6146 6.216569 CGCCAATATATGTACTGTTCACTCT 58.783 40.000 0.00 0.00 0.00 3.24
5626 6154 3.250744 CCGTCCGCCAATATATGTACTG 58.749 50.000 0.00 0.00 0.00 2.74
5632 6160 1.337447 CGTTCCCGTCCGCCAATATAT 60.337 52.381 0.00 0.00 0.00 0.86
5655 6183 2.082140 TACACCCGAGAGCCATACAT 57.918 50.000 0.00 0.00 0.00 2.29
5656 6184 1.855295 TTACACCCGAGAGCCATACA 58.145 50.000 0.00 0.00 0.00 2.29
5658 6186 3.962063 TGTAATTACACCCGAGAGCCATA 59.038 43.478 14.35 0.00 0.00 2.74
5659 6187 2.769663 TGTAATTACACCCGAGAGCCAT 59.230 45.455 14.35 0.00 0.00 4.40
5660 6188 2.181125 TGTAATTACACCCGAGAGCCA 58.819 47.619 14.35 0.00 0.00 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.