Multiple sequence alignment - TraesCS3B01G253100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G253100 chr3B 100.000 6332 0 0 1 6332 406516466 406510135 0.000000e+00 11694.0
1 TraesCS3B01G253100 chr3B 87.805 82 4 4 201 277 451424264 451424344 2.430000e-14 91.6
2 TraesCS3B01G253100 chr3B 83.721 86 6 6 201 278 635348204 635348119 2.450000e-09 75.0
3 TraesCS3B01G253100 chr3D 95.240 2857 89 21 3016 5861 313304855 313307675 0.000000e+00 4479.0
4 TraesCS3B01G253100 chr3D 96.658 1466 37 4 1556 3017 313303357 313304814 0.000000e+00 2425.0
5 TraesCS3B01G253100 chr3D 92.508 921 30 12 554 1458 313302413 313303310 0.000000e+00 1282.0
6 TraesCS3B01G253100 chr3A 97.179 2375 45 11 3016 5379 418757546 418755183 0.000000e+00 3995.0
7 TraesCS3B01G253100 chr3A 96.048 1594 45 7 1428 3017 418759166 418757587 0.000000e+00 2579.0
8 TraesCS3B01G253100 chr3A 91.822 856 33 11 554 1396 418759993 418759162 0.000000e+00 1158.0
9 TraesCS3B01G253100 chr3A 91.520 342 13 7 5365 5704 418755165 418754838 2.080000e-124 457.0
10 TraesCS3B01G253100 chr3A 87.261 157 13 5 5793 5949 418753063 418752914 8.440000e-39 172.0
11 TraesCS3B01G253100 chr3A 87.273 55 6 1 5783 5836 195460628 195460682 1.910000e-05 62.1
12 TraesCS3B01G253100 chr6B 98.736 554 7 0 1 554 31784692 31784139 0.000000e+00 985.0
13 TraesCS3B01G253100 chr6B 95.423 284 13 0 5954 6237 687701438 687701721 2.690000e-123 453.0
14 TraesCS3B01G253100 chr6B 95.423 284 13 0 5954 6237 687719824 687720107 2.690000e-123 453.0
15 TraesCS3B01G253100 chr7B 96.570 554 19 0 1 554 732534633 732535186 0.000000e+00 918.0
16 TraesCS3B01G253100 chr7B 96.570 554 19 0 1 554 732551671 732552224 0.000000e+00 918.0
17 TraesCS3B01G253100 chr7B 96.727 550 17 1 6 554 286040561 286040012 0.000000e+00 915.0
18 TraesCS3B01G253100 chr7B 95.789 285 11 1 5954 6237 592622818 592623102 5.780000e-125 459.0
19 TraesCS3B01G253100 chr7B 96.057 279 11 0 5955 6233 143179699 143179977 7.480000e-124 455.0
20 TraesCS3B01G253100 chr7B 95.699 279 12 0 5955 6233 629872943 629873221 3.480000e-122 449.0
21 TraesCS3B01G253100 chr2B 95.730 562 22 2 1 562 729173470 729172911 0.000000e+00 904.0
22 TraesCS3B01G253100 chr2B 96.403 278 10 0 5954 6231 215327424 215327701 5.780000e-125 459.0
23 TraesCS3B01G253100 chr2B 95.390 282 12 1 5954 6234 198448732 198449013 1.250000e-121 448.0
24 TraesCS3B01G253100 chr2B 82.955 88 10 2 5758 5845 762208037 762208119 2.450000e-09 75.0
25 TraesCS3B01G253100 chr6A 94.314 510 27 1 44 553 250839518 250840025 0.000000e+00 780.0
26 TraesCS3B01G253100 chr6A 84.440 527 58 18 44 559 558613244 558613757 1.230000e-136 497.0
27 TraesCS3B01G253100 chr6A 83.953 511 55 11 47 554 22159490 22159004 1.240000e-126 464.0
28 TraesCS3B01G253100 chrUn 85.605 521 55 18 44 554 297891453 297890943 4.350000e-146 529.0
29 TraesCS3B01G253100 chrUn 85.307 456 49 11 117 555 248894842 248895296 7.480000e-124 455.0
30 TraesCS3B01G253100 chr1A 84.766 512 51 10 47 554 8007187 8006699 7.380000e-134 488.0
31 TraesCS3B01G253100 chr5B 96.057 279 11 0 5955 6233 476018494 476018216 7.480000e-124 455.0
32 TraesCS3B01G253100 chr1B 95.683 278 12 0 5954 6231 660398566 660398843 1.250000e-121 448.0
33 TraesCS3B01G253100 chr1B 92.000 50 4 0 5787 5836 442949225 442949274 3.170000e-08 71.3
34 TraesCS3B01G253100 chr5D 92.000 50 4 0 5789 5838 335063654 335063703 3.170000e-08 71.3
35 TraesCS3B01G253100 chr5D 89.130 46 5 0 5789 5834 448102840 448102885 2.470000e-04 58.4
36 TraesCS3B01G253100 chr2D 100.000 36 0 0 5799 5834 639676821 639676786 4.100000e-07 67.6
37 TraesCS3B01G253100 chr2D 97.297 37 1 0 3327 3363 60611197 60611233 5.300000e-06 63.9
38 TraesCS3B01G253100 chr5A 89.796 49 5 0 5789 5837 436352475 436352523 5.300000e-06 63.9
39 TraesCS3B01G253100 chr5A 87.500 48 5 1 5795 5842 681002349 681002395 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G253100 chr3B 406510135 406516466 6331 True 11694.000000 11694 100.000 1 6332 1 chr3B.!!$R1 6331
1 TraesCS3B01G253100 chr3D 313302413 313307675 5262 False 2728.666667 4479 94.802 554 5861 3 chr3D.!!$F1 5307
2 TraesCS3B01G253100 chr3A 418752914 418759993 7079 True 1672.200000 3995 92.766 554 5949 5 chr3A.!!$R1 5395
3 TraesCS3B01G253100 chr6B 31784139 31784692 553 True 985.000000 985 98.736 1 554 1 chr6B.!!$R1 553
4 TraesCS3B01G253100 chr7B 732534633 732535186 553 False 918.000000 918 96.570 1 554 1 chr7B.!!$F4 553
5 TraesCS3B01G253100 chr7B 732551671 732552224 553 False 918.000000 918 96.570 1 554 1 chr7B.!!$F5 553
6 TraesCS3B01G253100 chr7B 286040012 286040561 549 True 915.000000 915 96.727 6 554 1 chr7B.!!$R1 548
7 TraesCS3B01G253100 chr2B 729172911 729173470 559 True 904.000000 904 95.730 1 562 1 chr2B.!!$R1 561
8 TraesCS3B01G253100 chr6A 250839518 250840025 507 False 780.000000 780 94.314 44 553 1 chr6A.!!$F1 509
9 TraesCS3B01G253100 chr6A 558613244 558613757 513 False 497.000000 497 84.440 44 559 1 chr6A.!!$F2 515
10 TraesCS3B01G253100 chrUn 297890943 297891453 510 True 529.000000 529 85.605 44 554 1 chrUn.!!$R1 510

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
630 666 0.321919 TGCCTCGAGATTTGCAGCTT 60.322 50.0 15.71 0.00 0.0 3.74 F
2119 2178 0.267356 CTCTCCCTCCCATCCTCCTT 59.733 60.0 0.00 0.00 0.0 3.36 F
2130 2190 1.031112 ATCCTCCTTCTCCCTCCCTT 58.969 55.0 0.00 0.00 0.0 3.95 F
2654 2718 1.530013 AAGGCCTCAACATGCAGTGC 61.530 55.0 5.23 8.58 0.0 4.40 F
4146 4261 1.135960 GGATGGGAAGAAGGAGGAGG 58.864 60.0 0.00 0.00 0.0 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2130 2190 0.123266 ATGAAGGGGGAGGAAGGGAA 59.877 55.000 0.00 0.0 0.0 3.97 R
3811 3917 1.271054 ACGTTCAGGAAGCAGCAAGAT 60.271 47.619 0.00 0.0 0.0 2.40 R
3941 4047 3.253188 TCTTTCAACGCCAAAATGAGAGG 59.747 43.478 0.00 0.0 0.0 3.69 R
4416 4531 1.136141 GTTTGAGAGACATGCTGCACG 60.136 52.381 3.57 0.0 0.0 5.34 R
5369 5517 0.034337 GGTCACCGGCAAGTACTCAA 59.966 55.000 0.00 0.0 0.0 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
616 652 1.557443 CGCCGTCGGATAATTGCCTC 61.557 60.000 17.49 0.00 0.00 4.70
630 666 0.321919 TGCCTCGAGATTTGCAGCTT 60.322 50.000 15.71 0.00 0.00 3.74
662 698 0.796312 CCACAATCCACCGAAAGACG 59.204 55.000 0.00 0.00 42.18 4.18
663 699 1.606994 CCACAATCCACCGAAAGACGA 60.607 52.381 0.00 0.00 45.77 4.20
664 700 1.459592 CACAATCCACCGAAAGACGAC 59.540 52.381 0.00 0.00 45.77 4.34
747 783 1.376812 GCCCACACGAAACCCTAGG 60.377 63.158 0.06 0.06 0.00 3.02
748 784 1.376812 CCCACACGAAACCCTAGGC 60.377 63.158 2.05 0.00 0.00 3.93
749 785 1.373435 CCACACGAAACCCTAGGCA 59.627 57.895 2.05 0.00 0.00 4.75
887 944 3.686916 AGTTCAGGCTCCTACTTTGAC 57.313 47.619 0.00 0.00 0.00 3.18
898 955 0.947180 TACTTTGACGCGCCTTGGTC 60.947 55.000 5.73 3.69 0.00 4.02
928 985 1.694150 TCCACTGACAGTTTCCTCCTG 59.306 52.381 5.04 0.00 36.01 3.86
1035 1094 2.654877 CCGCAGTTCCGGTACACT 59.345 61.111 14.14 5.96 43.24 3.55
1193 1252 6.611671 GCGTTCATCGAATTCGTGAGTATTAG 60.612 42.308 25.93 15.76 42.86 1.73
1211 1270 8.095452 AGTATTAGTTCCAGATCCTTGATTGT 57.905 34.615 0.00 0.00 0.00 2.71
1236 1295 6.882610 TCTTCGTTATAGTTTCGGCCTATA 57.117 37.500 0.00 0.00 0.00 1.31
1239 1298 6.822667 TCGTTATAGTTTCGGCCTATATGA 57.177 37.500 0.00 0.00 29.82 2.15
1280 1339 0.690762 TTAGTTCCTCAGCCACCCAC 59.309 55.000 0.00 0.00 0.00 4.61
1281 1340 1.198759 TAGTTCCTCAGCCACCCACC 61.199 60.000 0.00 0.00 0.00 4.61
1282 1341 3.256960 TTCCTCAGCCACCCACCC 61.257 66.667 0.00 0.00 0.00 4.61
1283 1342 4.590553 TCCTCAGCCACCCACCCA 62.591 66.667 0.00 0.00 0.00 4.51
1299 1358 2.204151 CACCCACCCCTTCCCTCT 60.204 66.667 0.00 0.00 0.00 3.69
1322 1381 1.612676 CCGTATCGAGTGTGGGGATA 58.387 55.000 0.00 0.00 0.00 2.59
1393 1452 6.598064 TCATAAACTGTTAAGGCCTTTAGAGC 59.402 38.462 26.08 8.59 0.00 4.09
1394 1453 4.642466 AACTGTTAAGGCCTTTAGAGCT 57.358 40.909 26.08 11.25 0.00 4.09
1395 1454 3.944087 ACTGTTAAGGCCTTTAGAGCTG 58.056 45.455 26.08 13.94 0.00 4.24
1396 1455 3.328050 ACTGTTAAGGCCTTTAGAGCTGT 59.672 43.478 26.08 14.59 0.00 4.40
1397 1456 4.530946 ACTGTTAAGGCCTTTAGAGCTGTA 59.469 41.667 26.08 0.00 0.00 2.74
1399 1458 6.383147 ACTGTTAAGGCCTTTAGAGCTGTATA 59.617 38.462 26.08 0.00 0.00 1.47
1400 1459 7.093024 ACTGTTAAGGCCTTTAGAGCTGTATAA 60.093 37.037 26.08 3.84 0.00 0.98
1401 1460 7.272978 TGTTAAGGCCTTTAGAGCTGTATAAG 58.727 38.462 26.08 0.00 0.00 1.73
1402 1461 7.125204 TGTTAAGGCCTTTAGAGCTGTATAAGA 59.875 37.037 26.08 2.42 0.00 2.10
1403 1462 5.538849 AGGCCTTTAGAGCTGTATAAGAC 57.461 43.478 0.00 0.00 0.00 3.01
1404 1463 4.962995 AGGCCTTTAGAGCTGTATAAGACA 59.037 41.667 0.00 0.00 36.35 3.41
1405 1464 5.604650 AGGCCTTTAGAGCTGTATAAGACAT 59.395 40.000 0.00 0.00 37.45 3.06
1406 1465 5.929415 GGCCTTTAGAGCTGTATAAGACATC 59.071 44.000 0.00 0.00 37.45 3.06
1407 1466 6.239458 GGCCTTTAGAGCTGTATAAGACATCT 60.239 42.308 0.00 0.00 37.22 2.90
1408 1467 7.213678 GCCTTTAGAGCTGTATAAGACATCTT 58.786 38.462 0.00 0.00 34.63 2.40
1506 1565 7.862873 GTCTGGAGTTTGTCTTAAGGAATTTTG 59.137 37.037 1.85 0.00 0.00 2.44
1517 1576 9.508567 GTCTTAAGGAATTTTGACTGATTATGC 57.491 33.333 1.85 0.00 0.00 3.14
1524 1583 6.757897 ATTTTGACTGATTATGCGAGGAAA 57.242 33.333 0.00 0.00 0.00 3.13
1525 1584 6.567687 TTTTGACTGATTATGCGAGGAAAA 57.432 33.333 0.00 0.00 0.00 2.29
1526 1585 6.567687 TTTGACTGATTATGCGAGGAAAAA 57.432 33.333 0.00 0.00 0.00 1.94
1527 1586 5.801350 TGACTGATTATGCGAGGAAAAAG 57.199 39.130 0.00 0.00 0.00 2.27
1528 1587 5.487433 TGACTGATTATGCGAGGAAAAAGA 58.513 37.500 0.00 0.00 0.00 2.52
1529 1588 5.937540 TGACTGATTATGCGAGGAAAAAGAA 59.062 36.000 0.00 0.00 0.00 2.52
1530 1589 6.429692 TGACTGATTATGCGAGGAAAAAGAAA 59.570 34.615 0.00 0.00 0.00 2.52
1531 1590 7.121168 TGACTGATTATGCGAGGAAAAAGAAAT 59.879 33.333 0.00 0.00 0.00 2.17
1532 1591 8.506168 ACTGATTATGCGAGGAAAAAGAAATA 57.494 30.769 0.00 0.00 0.00 1.40
1568 1627 5.425539 ACTGTAGTTTGGTATGCTCCATAGT 59.574 40.000 0.00 0.00 37.33 2.12
1576 1635 4.948004 TGGTATGCTCCATAGTAGATACCG 59.052 45.833 0.00 0.00 35.95 4.02
2119 2178 0.267356 CTCTCCCTCCCATCCTCCTT 59.733 60.000 0.00 0.00 0.00 3.36
2130 2190 1.031112 ATCCTCCTTCTCCCTCCCTT 58.969 55.000 0.00 0.00 0.00 3.95
2266 2329 4.547532 GAGGTACTTGACACTGTGTACAG 58.452 47.826 14.31 14.32 45.23 2.74
2282 2345 8.099364 CTGTGTACAGGAACAAATAAAGATGT 57.901 34.615 0.00 0.00 40.20 3.06
2379 2442 6.094464 CACAAGATGAAGATGCCAGAATTGTA 59.906 38.462 0.00 0.00 0.00 2.41
2444 2507 5.164061 GCAACAATTCGTATCTTTTTGCCAG 60.164 40.000 0.00 0.00 33.55 4.85
2467 2531 6.748658 CAGAACCACTAAACATGCATACATTG 59.251 38.462 0.00 0.00 32.87 2.82
2468 2532 6.434028 AGAACCACTAAACATGCATACATTGT 59.566 34.615 0.00 0.00 32.87 2.71
2469 2533 6.588719 ACCACTAAACATGCATACATTGTT 57.411 33.333 0.00 0.00 32.87 2.83
2470 2534 6.620678 ACCACTAAACATGCATACATTGTTC 58.379 36.000 0.00 0.00 32.87 3.18
2471 2535 6.208402 ACCACTAAACATGCATACATTGTTCA 59.792 34.615 0.00 0.00 32.87 3.18
2472 2536 6.527722 CCACTAAACATGCATACATTGTTCAC 59.472 38.462 0.00 0.00 32.87 3.18
2473 2537 6.249050 CACTAAACATGCATACATTGTTCACG 59.751 38.462 0.00 0.00 32.87 4.35
2474 2538 5.369685 AAACATGCATACATTGTTCACGA 57.630 34.783 0.00 0.00 32.87 4.35
2475 2539 5.565592 AACATGCATACATTGTTCACGAT 57.434 34.783 0.00 0.00 32.87 3.73
2480 2544 6.193514 TGCATACATTGTTCACGATTTCAT 57.806 33.333 0.00 0.00 0.00 2.57
2490 2554 3.355378 TCACGATTTCATGCCCTCAAAT 58.645 40.909 0.00 0.00 0.00 2.32
2637 2701 7.772332 AAAAGTACATCAGCTAATCGGTAAG 57.228 36.000 0.00 0.00 0.00 2.34
2654 2718 1.530013 AAGGCCTCAACATGCAGTGC 61.530 55.000 5.23 8.58 0.00 4.40
2693 2757 1.753649 TGTGCTTGTTTGGCTTTAGCA 59.246 42.857 3.88 0.00 44.36 3.49
2718 2782 4.592942 TGCTTCTGTCATTCTTTATGCCT 58.407 39.130 0.00 0.00 34.06 4.75
2749 2813 5.077564 TCAAGTGACTGACATACCTGTACT 58.922 41.667 0.00 0.00 35.14 2.73
2808 2872 8.141835 AGAATTGCAATTGTTTTAACAGTTCC 57.858 30.769 28.67 9.20 40.50 3.62
2923 2987 8.288208 CACTGGAATATCAATGCTTTGTAGATC 58.712 37.037 11.67 7.13 34.32 2.75
3001 3065 9.640963 AAGTATTGACTCGGTGATAATATAAGC 57.359 33.333 0.00 0.00 33.58 3.09
3038 3144 8.077386 TGGTTTTGTATTTTTAGCGGTTTAGAG 58.923 33.333 0.00 0.00 0.00 2.43
3102 3208 2.175715 ACTTGCCTTCAAACTCTTCCCT 59.824 45.455 0.00 0.00 0.00 4.20
3162 3268 4.795308 GCTTCTGTGCTTTTCTTCATGCTT 60.795 41.667 0.00 0.00 0.00 3.91
3163 3269 4.924305 TCTGTGCTTTTCTTCATGCTTT 57.076 36.364 0.00 0.00 0.00 3.51
3164 3270 6.389830 TTCTGTGCTTTTCTTCATGCTTTA 57.610 33.333 0.00 0.00 0.00 1.85
3285 3391 9.316730 CTAAATGCATGCAATTGGTTTTACTAT 57.683 29.630 27.37 3.08 0.00 2.12
3445 3551 4.202440 ACAGTTCATCATCTGATCATCCCC 60.202 45.833 0.00 0.00 35.84 4.81
3632 3738 3.008375 TGGCAGATGCATTCCTAGGTATC 59.992 47.826 9.08 6.64 44.36 2.24
3811 3917 8.005388 AGTCATAGGAGTAGGTAAGAATTGCTA 58.995 37.037 0.00 0.00 0.00 3.49
3824 3930 3.631227 AGAATTGCTATCTTGCTGCTTCC 59.369 43.478 0.00 0.00 0.00 3.46
3843 3949 4.271696 TCCTGAACGTTCATCACATTCT 57.728 40.909 29.79 0.00 36.46 2.40
3851 3957 4.162320 ACGTTCATCACATTCTCCTACCAT 59.838 41.667 0.00 0.00 0.00 3.55
3880 3986 4.646945 TCTCACTACAAACATGGGCAAAAA 59.353 37.500 0.00 0.00 0.00 1.94
3927 4033 9.824216 TTCTATTACCCTATGACACTAAGCTAT 57.176 33.333 0.00 0.00 0.00 2.97
4146 4261 1.135960 GGATGGGAAGAAGGAGGAGG 58.864 60.000 0.00 0.00 0.00 4.30
4235 4350 9.537192 CTTCACGAGGTAATGTATTAAATACCA 57.463 33.333 3.88 0.00 40.21 3.25
4318 4433 3.882888 TCTCTGCTTTTGGGTTTGTACAG 59.117 43.478 0.00 0.00 0.00 2.74
4380 4495 6.826741 GCACTAATCCAGTATCCAGGTAAAAA 59.173 38.462 0.00 0.00 34.98 1.94
4743 4859 3.189080 TGTTTCAGATCAACAATGAGCGG 59.811 43.478 0.00 0.00 46.51 5.52
4763 4879 0.179081 GGTCGAGATTACACTGGGGC 60.179 60.000 0.00 0.00 0.00 5.80
4995 5111 1.562672 AATACGCCAGCCAGGGAGTT 61.563 55.000 1.63 0.00 41.45 3.01
5064 5180 3.489355 TCAAATGTCACAGCATTCAGGT 58.511 40.909 0.00 0.00 38.03 4.00
5271 5387 2.123428 GCCGCAGATGATGGGCTTT 61.123 57.895 0.00 0.00 40.30 3.51
5274 5390 0.465097 CGCAGATGATGGGCTTTCCT 60.465 55.000 0.00 0.00 34.77 3.36
5458 5607 2.859806 GCACATGTGGCAGAAACAAGTC 60.860 50.000 26.55 1.87 27.57 3.01
5572 5721 0.249398 ACTATTCGTTTCTGCGGCCT 59.751 50.000 0.00 0.00 0.00 5.19
5639 5789 4.261322 CCAGGGAATGAAACAGCATATTCG 60.261 45.833 0.00 0.00 31.89 3.34
5669 5819 3.425713 CACAGCAGCGTGGCGATT 61.426 61.111 8.89 0.00 39.27 3.34
5681 5831 2.416836 CGTGGCGATTAAGAGTTCAGGA 60.417 50.000 0.00 0.00 0.00 3.86
5682 5832 3.190874 GTGGCGATTAAGAGTTCAGGAG 58.809 50.000 0.00 0.00 0.00 3.69
5683 5833 2.832129 TGGCGATTAAGAGTTCAGGAGT 59.168 45.455 0.00 0.00 0.00 3.85
5701 5851 9.669887 TTCAGGAGTAGTTTAGAGTAACTCTAG 57.330 37.037 0.06 0.00 42.92 2.43
5726 7590 6.263168 GCACAATAGCCTCTGTATGGTTTTAT 59.737 38.462 0.00 0.00 0.00 1.40
5738 7602 8.069356 TCTGTATGGTTTTATAGGGGTCTCTAA 58.931 37.037 0.00 0.00 0.00 2.10
5739 7603 8.626917 TGTATGGTTTTATAGGGGTCTCTAAA 57.373 34.615 0.00 0.00 0.00 1.85
5744 7608 8.105197 TGGTTTTATAGGGGTCTCTAAAAGTTC 58.895 37.037 0.00 0.00 34.44 3.01
5745 7609 8.327271 GGTTTTATAGGGGTCTCTAAAAGTTCT 58.673 37.037 0.00 0.00 34.44 3.01
5748 7612 9.779951 TTTATAGGGGTCTCTAAAAGTTCTACT 57.220 33.333 0.00 0.00 0.00 2.57
5749 7613 7.901283 ATAGGGGTCTCTAAAAGTTCTACTC 57.099 40.000 0.00 0.00 0.00 2.59
5750 7614 5.024785 AGGGGTCTCTAAAAGTTCTACTCC 58.975 45.833 0.00 0.00 0.00 3.85
5751 7615 4.161942 GGGGTCTCTAAAAGTTCTACTCCC 59.838 50.000 0.00 0.00 0.00 4.30
5752 7616 5.024785 GGGTCTCTAAAAGTTCTACTCCCT 58.975 45.833 0.00 0.00 0.00 4.20
5753 7617 5.127519 GGGTCTCTAAAAGTTCTACTCCCTC 59.872 48.000 0.00 0.00 0.00 4.30
5754 7618 5.953548 GGTCTCTAAAAGTTCTACTCCCTCT 59.046 44.000 0.00 0.00 0.00 3.69
5755 7619 7.118060 GGTCTCTAAAAGTTCTACTCCCTCTA 58.882 42.308 0.00 0.00 0.00 2.43
5756 7620 7.614974 GGTCTCTAAAAGTTCTACTCCCTCTAA 59.385 40.741 0.00 0.00 0.00 2.10
5757 7621 9.192642 GTCTCTAAAAGTTCTACTCCCTCTAAT 57.807 37.037 0.00 0.00 0.00 1.73
5758 7622 9.411189 TCTCTAAAAGTTCTACTCCCTCTAATC 57.589 37.037 0.00 0.00 0.00 1.75
5759 7623 8.536340 TCTAAAAGTTCTACTCCCTCTAATCC 57.464 38.462 0.00 0.00 0.00 3.01
5760 7624 8.120538 TCTAAAAGTTCTACTCCCTCTAATCCA 58.879 37.037 0.00 0.00 0.00 3.41
5761 7625 7.757242 AAAAGTTCTACTCCCTCTAATCCAT 57.243 36.000 0.00 0.00 0.00 3.41
5762 7626 8.855804 AAAAGTTCTACTCCCTCTAATCCATA 57.144 34.615 0.00 0.00 0.00 2.74
5763 7627 9.453830 AAAAGTTCTACTCCCTCTAATCCATAT 57.546 33.333 0.00 0.00 0.00 1.78
5764 7628 9.453830 AAAGTTCTACTCCCTCTAATCCATATT 57.546 33.333 0.00 0.00 0.00 1.28
5774 7638 8.398743 TCCCTCTAATCCATATTAATTTTCCCC 58.601 37.037 0.00 0.00 0.00 4.81
5791 7655 8.996024 ATTTTCCCCGATTTAATACAACAAAG 57.004 30.769 0.00 0.00 0.00 2.77
5797 7661 8.463607 CCCCGATTTAATACAACAAAGTTGTAT 58.536 33.333 22.88 22.88 44.75 2.29
5869 7733 8.423906 TGGATACTCCCAGATTAGAAACTATC 57.576 38.462 0.00 0.00 35.03 2.08
5870 7734 8.010697 TGGATACTCCCAGATTAGAAACTATCA 58.989 37.037 0.00 0.00 35.03 2.15
5891 7755 9.631452 CTATCAGTCATTTTCCTTTTCTTTTCC 57.369 33.333 0.00 0.00 0.00 3.13
5892 7756 7.660030 TCAGTCATTTTCCTTTTCTTTTCCT 57.340 32.000 0.00 0.00 0.00 3.36
5894 7758 8.539544 TCAGTCATTTTCCTTTTCTTTTCCTTT 58.460 29.630 0.00 0.00 0.00 3.11
5897 7761 9.383519 GTCATTTTCCTTTTCTTTTCCTTTCTT 57.616 29.630 0.00 0.00 0.00 2.52
5903 7767 9.475620 TTCCTTTTCTTTTCCTTTCTTTCTACT 57.524 29.630 0.00 0.00 0.00 2.57
5904 7768 9.121658 TCCTTTTCTTTTCCTTTCTTTCTACTC 57.878 33.333 0.00 0.00 0.00 2.59
5905 7769 9.126151 CCTTTTCTTTTCCTTTCTTTCTACTCT 57.874 33.333 0.00 0.00 0.00 3.24
5930 7794 2.825836 CATCTTGGGAGGCGGTGC 60.826 66.667 0.00 0.00 0.00 5.01
5950 7814 2.593725 CAGGATGCCATGGGAGCG 60.594 66.667 15.77 0.00 0.00 5.03
5951 7815 2.769621 AGGATGCCATGGGAGCGA 60.770 61.111 15.77 0.00 0.00 4.93
5952 7816 2.281345 GGATGCCATGGGAGCGAG 60.281 66.667 15.77 0.00 0.00 5.03
5953 7817 2.811514 GGATGCCATGGGAGCGAGA 61.812 63.158 15.77 0.00 0.00 4.04
5954 7818 1.374190 GATGCCATGGGAGCGAGAT 59.626 57.895 15.13 0.00 0.00 2.75
5955 7819 0.610174 GATGCCATGGGAGCGAGATA 59.390 55.000 15.13 0.00 0.00 1.98
5956 7820 1.002430 GATGCCATGGGAGCGAGATAA 59.998 52.381 15.13 0.00 0.00 1.75
5957 7821 0.394192 TGCCATGGGAGCGAGATAAG 59.606 55.000 15.13 0.00 0.00 1.73
5958 7822 0.321122 GCCATGGGAGCGAGATAAGG 60.321 60.000 15.13 0.00 0.00 2.69
5959 7823 0.321122 CCATGGGAGCGAGATAAGGC 60.321 60.000 2.85 0.00 0.00 4.35
5960 7824 0.683973 CATGGGAGCGAGATAAGGCT 59.316 55.000 0.00 0.00 43.42 4.58
5961 7825 0.683973 ATGGGAGCGAGATAAGGCTG 59.316 55.000 0.00 0.00 40.16 4.85
5962 7826 0.397114 TGGGAGCGAGATAAGGCTGA 60.397 55.000 0.00 0.00 40.16 4.26
5963 7827 0.972883 GGGAGCGAGATAAGGCTGAT 59.027 55.000 0.00 0.00 40.16 2.90
5964 7828 1.346068 GGGAGCGAGATAAGGCTGATT 59.654 52.381 0.00 0.00 40.16 2.57
5965 7829 2.411904 GGAGCGAGATAAGGCTGATTG 58.588 52.381 0.00 0.00 40.16 2.67
5966 7830 2.224161 GGAGCGAGATAAGGCTGATTGT 60.224 50.000 0.00 0.00 40.16 2.71
5967 7831 3.005897 GGAGCGAGATAAGGCTGATTGTA 59.994 47.826 0.00 0.00 40.16 2.41
5968 7832 4.501571 GGAGCGAGATAAGGCTGATTGTAA 60.502 45.833 0.00 0.00 40.16 2.41
5969 7833 5.220710 AGCGAGATAAGGCTGATTGTAAT 57.779 39.130 0.00 0.00 38.27 1.89
5970 7834 4.993584 AGCGAGATAAGGCTGATTGTAATG 59.006 41.667 0.00 0.00 38.27 1.90
5971 7835 4.153117 GCGAGATAAGGCTGATTGTAATGG 59.847 45.833 0.00 0.00 0.00 3.16
5972 7836 4.692625 CGAGATAAGGCTGATTGTAATGGG 59.307 45.833 0.00 0.00 0.00 4.00
5973 7837 5.511373 CGAGATAAGGCTGATTGTAATGGGA 60.511 44.000 0.00 0.00 0.00 4.37
5974 7838 5.874093 AGATAAGGCTGATTGTAATGGGAG 58.126 41.667 0.00 0.00 0.00 4.30
5975 7839 5.370880 AGATAAGGCTGATTGTAATGGGAGT 59.629 40.000 0.00 0.00 0.00 3.85
5976 7840 6.558775 AGATAAGGCTGATTGTAATGGGAGTA 59.441 38.462 0.00 0.00 0.00 2.59
5977 7841 5.653255 AAGGCTGATTGTAATGGGAGTAT 57.347 39.130 0.00 0.00 0.00 2.12
5978 7842 5.234466 AGGCTGATTGTAATGGGAGTATC 57.766 43.478 0.00 0.00 0.00 2.24
5979 7843 4.660303 AGGCTGATTGTAATGGGAGTATCA 59.340 41.667 0.00 0.00 36.25 2.15
5980 7844 5.311649 AGGCTGATTGTAATGGGAGTATCAT 59.688 40.000 0.00 0.00 36.25 2.45
5981 7845 6.501805 AGGCTGATTGTAATGGGAGTATCATA 59.498 38.462 0.00 0.00 36.25 2.15
5982 7846 6.820656 GGCTGATTGTAATGGGAGTATCATAG 59.179 42.308 0.00 0.00 36.25 2.23
5983 7847 6.820656 GCTGATTGTAATGGGAGTATCATAGG 59.179 42.308 0.00 0.00 36.25 2.57
5984 7848 7.527868 GCTGATTGTAATGGGAGTATCATAGGT 60.528 40.741 0.00 0.00 36.25 3.08
5985 7849 8.966155 TGATTGTAATGGGAGTATCATAGGTA 57.034 34.615 0.00 0.00 36.25 3.08
5986 7850 9.035890 TGATTGTAATGGGAGTATCATAGGTAG 57.964 37.037 0.00 0.00 36.25 3.18
5987 7851 8.974292 ATTGTAATGGGAGTATCATAGGTAGT 57.026 34.615 0.00 0.00 36.25 2.73
5990 7854 9.696572 TGTAATGGGAGTATCATAGGTAGTATC 57.303 37.037 0.00 0.00 36.25 2.24
5991 7855 9.696572 GTAATGGGAGTATCATAGGTAGTATCA 57.303 37.037 0.00 0.00 36.25 2.15
5993 7857 8.774546 ATGGGAGTATCATAGGTAGTATCATG 57.225 38.462 0.00 0.00 36.25 3.07
5994 7858 6.607600 TGGGAGTATCATAGGTAGTATCATGC 59.392 42.308 0.00 0.00 36.25 4.06
5995 7859 6.607600 GGGAGTATCATAGGTAGTATCATGCA 59.392 42.308 0.00 0.00 36.25 3.96
5996 7860 7.288852 GGGAGTATCATAGGTAGTATCATGCAT 59.711 40.741 0.00 0.00 36.25 3.96
5997 7861 8.140628 GGAGTATCATAGGTAGTATCATGCATG 58.859 40.741 21.07 21.07 36.25 4.06
5998 7862 7.495901 AGTATCATAGGTAGTATCATGCATGC 58.504 38.462 22.25 11.82 0.00 4.06
5999 7863 5.089970 TCATAGGTAGTATCATGCATGCC 57.910 43.478 22.25 15.40 0.00 4.40
6000 7864 4.531732 TCATAGGTAGTATCATGCATGCCA 59.468 41.667 22.25 8.84 0.00 4.92
6001 7865 3.862877 AGGTAGTATCATGCATGCCAA 57.137 42.857 22.25 5.34 0.00 4.52
6002 7866 3.480470 AGGTAGTATCATGCATGCCAAC 58.520 45.455 22.25 17.59 0.00 3.77
6003 7867 3.137176 AGGTAGTATCATGCATGCCAACT 59.863 43.478 22.25 22.78 0.00 3.16
6004 7868 4.347876 AGGTAGTATCATGCATGCCAACTA 59.652 41.667 22.25 21.88 0.00 2.24
6005 7869 4.692625 GGTAGTATCATGCATGCCAACTAG 59.307 45.833 22.25 0.00 0.00 2.57
6006 7870 4.694760 AGTATCATGCATGCCAACTAGA 57.305 40.909 22.25 2.12 0.00 2.43
6007 7871 4.384056 AGTATCATGCATGCCAACTAGAC 58.616 43.478 22.25 10.78 0.00 2.59
6008 7872 2.785540 TCATGCATGCCAACTAGACA 57.214 45.000 22.25 0.00 0.00 3.41
6009 7873 3.070476 TCATGCATGCCAACTAGACAA 57.930 42.857 22.25 0.00 0.00 3.18
6010 7874 2.749076 TCATGCATGCCAACTAGACAAC 59.251 45.455 22.25 0.00 0.00 3.32
6011 7875 2.566833 TGCATGCCAACTAGACAACT 57.433 45.000 16.68 0.00 0.00 3.16
6012 7876 2.862541 TGCATGCCAACTAGACAACTT 58.137 42.857 16.68 0.00 0.00 2.66
6013 7877 3.221771 TGCATGCCAACTAGACAACTTT 58.778 40.909 16.68 0.00 0.00 2.66
6014 7878 4.393834 TGCATGCCAACTAGACAACTTTA 58.606 39.130 16.68 0.00 0.00 1.85
6015 7879 4.824537 TGCATGCCAACTAGACAACTTTAA 59.175 37.500 16.68 0.00 0.00 1.52
6016 7880 5.476599 TGCATGCCAACTAGACAACTTTAAT 59.523 36.000 16.68 0.00 0.00 1.40
6017 7881 5.801947 GCATGCCAACTAGACAACTTTAATG 59.198 40.000 6.36 0.00 0.00 1.90
6018 7882 6.349280 GCATGCCAACTAGACAACTTTAATGA 60.349 38.462 6.36 0.00 0.00 2.57
6019 7883 6.801539 TGCCAACTAGACAACTTTAATGAG 57.198 37.500 0.00 0.00 0.00 2.90
6020 7884 5.705441 TGCCAACTAGACAACTTTAATGAGG 59.295 40.000 0.00 0.00 0.00 3.86
6021 7885 5.705905 GCCAACTAGACAACTTTAATGAGGT 59.294 40.000 0.00 0.00 0.00 3.85
6022 7886 6.348540 GCCAACTAGACAACTTTAATGAGGTG 60.349 42.308 0.00 0.00 40.24 4.00
6023 7887 6.149474 CCAACTAGACAACTTTAATGAGGTGG 59.851 42.308 0.00 0.00 38.69 4.61
6024 7888 5.246307 ACTAGACAACTTTAATGAGGTGGC 58.754 41.667 0.00 0.00 42.97 5.01
6025 7889 4.098914 AGACAACTTTAATGAGGTGGCA 57.901 40.909 0.95 0.00 45.17 4.92
6026 7890 4.666512 AGACAACTTTAATGAGGTGGCAT 58.333 39.130 0.95 0.00 45.17 4.40
6027 7891 5.815581 AGACAACTTTAATGAGGTGGCATA 58.184 37.500 0.95 0.00 45.17 3.14
6028 7892 5.882557 AGACAACTTTAATGAGGTGGCATAG 59.117 40.000 0.95 0.00 45.17 2.23
6029 7893 5.815581 ACAACTTTAATGAGGTGGCATAGA 58.184 37.500 0.00 0.00 38.69 1.98
6030 7894 6.245408 ACAACTTTAATGAGGTGGCATAGAA 58.755 36.000 0.00 0.00 38.69 2.10
6031 7895 6.891908 ACAACTTTAATGAGGTGGCATAGAAT 59.108 34.615 0.00 0.00 38.69 2.40
6032 7896 7.397192 ACAACTTTAATGAGGTGGCATAGAATT 59.603 33.333 0.00 0.00 38.69 2.17
6033 7897 8.902806 CAACTTTAATGAGGTGGCATAGAATTA 58.097 33.333 0.00 0.00 30.59 1.40
6034 7898 9.474313 AACTTTAATGAGGTGGCATAGAATTAA 57.526 29.630 0.00 0.00 0.00 1.40
6035 7899 9.474313 ACTTTAATGAGGTGGCATAGAATTAAA 57.526 29.630 14.69 14.69 31.09 1.52
6038 7902 9.639563 TTAATGAGGTGGCATAGAATTAAATGA 57.360 29.630 0.00 0.00 0.00 2.57
6039 7903 8.537728 AATGAGGTGGCATAGAATTAAATGAA 57.462 30.769 0.00 0.00 0.00 2.57
6040 7904 7.953005 TGAGGTGGCATAGAATTAAATGAAA 57.047 32.000 0.00 0.00 0.00 2.69
6041 7905 8.537728 TGAGGTGGCATAGAATTAAATGAAAT 57.462 30.769 0.00 0.00 0.00 2.17
6042 7906 9.639563 TGAGGTGGCATAGAATTAAATGAAATA 57.360 29.630 0.00 0.00 0.00 1.40
6096 7960 9.856488 ACCGTATCATAATAAATGCTACACTAG 57.144 33.333 0.00 0.00 0.00 2.57
6097 7961 9.856488 CCGTATCATAATAAATGCTACACTAGT 57.144 33.333 0.00 0.00 0.00 2.57
6113 7977 5.348418 CACTAGTATGTGTTATGCATGGC 57.652 43.478 10.16 2.21 33.61 4.40
6114 7978 4.815846 CACTAGTATGTGTTATGCATGGCA 59.184 41.667 10.16 5.14 36.74 4.92
6115 7979 5.296531 CACTAGTATGTGTTATGCATGGCAA 59.703 40.000 10.16 0.00 36.28 4.52
6116 7980 6.016860 CACTAGTATGTGTTATGCATGGCAAT 60.017 38.462 10.16 7.18 36.28 3.56
6117 7981 7.173047 CACTAGTATGTGTTATGCATGGCAATA 59.827 37.037 10.16 6.36 36.28 1.90
6118 7982 6.957920 AGTATGTGTTATGCATGGCAATAA 57.042 33.333 10.16 0.00 43.62 1.40
6119 7983 7.345422 AGTATGTGTTATGCATGGCAATAAA 57.655 32.000 10.16 0.00 43.62 1.40
6120 7984 7.954835 AGTATGTGTTATGCATGGCAATAAAT 58.045 30.769 10.16 0.00 43.62 1.40
6121 7985 9.076781 AGTATGTGTTATGCATGGCAATAAATA 57.923 29.630 10.16 0.00 43.62 1.40
6122 7986 9.689976 GTATGTGTTATGCATGGCAATAAATAA 57.310 29.630 10.16 0.00 43.62 1.40
6124 7988 8.645730 TGTGTTATGCATGGCAATAAATAAAG 57.354 30.769 10.16 0.00 43.62 1.85
6125 7989 8.256605 TGTGTTATGCATGGCAATAAATAAAGT 58.743 29.630 10.16 0.00 43.62 2.66
6126 7990 8.755018 GTGTTATGCATGGCAATAAATAAAGTC 58.245 33.333 10.16 0.00 43.62 3.01
6127 7991 8.473219 TGTTATGCATGGCAATAAATAAAGTCA 58.527 29.630 10.16 0.00 43.62 3.41
6128 7992 9.480053 GTTATGCATGGCAATAAATAAAGTCAT 57.520 29.630 10.16 0.00 43.62 3.06
6129 7993 9.695526 TTATGCATGGCAATAAATAAAGTCATC 57.304 29.630 10.16 0.00 43.62 2.92
6130 7994 7.350744 TGCATGGCAATAAATAAAGTCATCT 57.649 32.000 0.00 0.00 34.76 2.90
6131 7995 8.462589 TGCATGGCAATAAATAAAGTCATCTA 57.537 30.769 0.00 0.00 34.76 1.98
6132 7996 9.081204 TGCATGGCAATAAATAAAGTCATCTAT 57.919 29.630 0.00 0.00 34.76 1.98
6133 7997 9.350357 GCATGGCAATAAATAAAGTCATCTATG 57.650 33.333 0.00 0.00 0.00 2.23
6165 8029 9.373450 ACTATATGATACTATGCATTAGGGAGG 57.627 37.037 3.54 0.00 31.68 4.30
6166 8030 9.373450 CTATATGATACTATGCATTAGGGAGGT 57.627 37.037 3.54 0.00 31.68 3.85
6168 8032 7.667575 ATGATACTATGCATTAGGGAGGTAG 57.332 40.000 3.54 0.00 31.68 3.18
6169 8033 6.562228 TGATACTATGCATTAGGGAGGTAGT 58.438 40.000 3.54 0.88 31.68 2.73
6170 8034 7.705700 TGATACTATGCATTAGGGAGGTAGTA 58.294 38.462 3.54 3.44 31.68 1.82
6171 8035 8.344546 TGATACTATGCATTAGGGAGGTAGTAT 58.655 37.037 3.54 8.56 36.89 2.12
6172 8036 8.770010 ATACTATGCATTAGGGAGGTAGTATC 57.230 38.462 3.54 0.00 31.70 2.24
6173 8037 6.562228 ACTATGCATTAGGGAGGTAGTATCA 58.438 40.000 3.54 0.00 31.68 2.15
6174 8038 7.192628 ACTATGCATTAGGGAGGTAGTATCAT 58.807 38.462 3.54 0.00 31.68 2.45
6175 8039 8.344546 ACTATGCATTAGGGAGGTAGTATCATA 58.655 37.037 3.54 0.00 31.68 2.15
6176 8040 9.373450 CTATGCATTAGGGAGGTAGTATCATAT 57.627 37.037 3.54 0.00 0.00 1.78
6178 8042 8.534954 TGCATTAGGGAGGTAGTATCATATAC 57.465 38.462 0.00 0.00 0.00 1.47
6179 8043 8.344546 TGCATTAGGGAGGTAGTATCATATACT 58.655 37.037 5.04 5.04 0.00 2.12
6180 8044 9.863650 GCATTAGGGAGGTAGTATCATATACTA 57.136 37.037 3.25 3.25 0.00 1.82
6226 8090 8.326765 ACTTATGATACTACCCATTACAACCA 57.673 34.615 0.00 0.00 0.00 3.67
6227 8091 8.429641 ACTTATGATACTACCCATTACAACCAG 58.570 37.037 0.00 0.00 0.00 4.00
6228 8092 5.031066 TGATACTACCCATTACAACCAGC 57.969 43.478 0.00 0.00 0.00 4.85
6229 8093 2.801077 ACTACCCATTACAACCAGCC 57.199 50.000 0.00 0.00 0.00 4.85
6230 8094 2.275466 ACTACCCATTACAACCAGCCT 58.725 47.619 0.00 0.00 0.00 4.58
6231 8095 3.456842 ACTACCCATTACAACCAGCCTA 58.543 45.455 0.00 0.00 0.00 3.93
6232 8096 3.847780 ACTACCCATTACAACCAGCCTAA 59.152 43.478 0.00 0.00 0.00 2.69
6233 8097 3.366052 ACCCATTACAACCAGCCTAAG 57.634 47.619 0.00 0.00 0.00 2.18
6234 8098 2.025321 ACCCATTACAACCAGCCTAAGG 60.025 50.000 0.00 0.00 0.00 2.69
6235 8099 2.241176 CCCATTACAACCAGCCTAAGGA 59.759 50.000 0.00 0.00 0.00 3.36
6236 8100 3.279434 CCATTACAACCAGCCTAAGGAC 58.721 50.000 0.00 0.00 0.00 3.85
6237 8101 3.308117 CCATTACAACCAGCCTAAGGACA 60.308 47.826 0.00 0.00 0.00 4.02
6238 8102 3.412237 TTACAACCAGCCTAAGGACAC 57.588 47.619 0.00 0.00 0.00 3.67
6239 8103 0.034896 ACAACCAGCCTAAGGACACG 59.965 55.000 0.00 0.00 0.00 4.49
6240 8104 0.320374 CAACCAGCCTAAGGACACGA 59.680 55.000 0.00 0.00 0.00 4.35
6241 8105 0.320697 AACCAGCCTAAGGACACGAC 59.679 55.000 0.00 0.00 0.00 4.34
6242 8106 0.830444 ACCAGCCTAAGGACACGACA 60.830 55.000 0.00 0.00 0.00 4.35
6243 8107 0.108615 CCAGCCTAAGGACACGACAG 60.109 60.000 0.00 0.00 0.00 3.51
6244 8108 0.888619 CAGCCTAAGGACACGACAGA 59.111 55.000 0.00 0.00 0.00 3.41
6245 8109 1.478510 CAGCCTAAGGACACGACAGAT 59.521 52.381 0.00 0.00 0.00 2.90
6246 8110 1.478510 AGCCTAAGGACACGACAGATG 59.521 52.381 0.00 0.00 0.00 2.90
6247 8111 1.471676 GCCTAAGGACACGACAGATGG 60.472 57.143 0.00 0.00 0.00 3.51
6248 8112 1.825474 CCTAAGGACACGACAGATGGT 59.175 52.381 0.00 0.00 0.00 3.55
6249 8113 2.159226 CCTAAGGACACGACAGATGGTC 60.159 54.545 0.00 0.00 43.36 4.02
6250 8114 4.913126 GGACACGACAGATGGTCC 57.087 61.111 0.00 0.00 43.95 4.46
6251 8115 1.153823 GGACACGACAGATGGTCCG 60.154 63.158 0.00 0.00 43.95 4.79
6252 8116 1.585006 GACACGACAGATGGTCCGT 59.415 57.895 0.00 0.00 43.95 4.69
6253 8117 0.038526 GACACGACAGATGGTCCGTT 60.039 55.000 0.00 0.00 43.95 4.44
6254 8118 0.038526 ACACGACAGATGGTCCGTTC 60.039 55.000 0.00 0.00 43.95 3.95
6255 8119 0.038618 CACGACAGATGGTCCGTTCA 60.039 55.000 0.00 0.00 43.95 3.18
6256 8120 0.677288 ACGACAGATGGTCCGTTCAA 59.323 50.000 0.00 0.00 43.95 2.69
6257 8121 1.336887 ACGACAGATGGTCCGTTCAAG 60.337 52.381 0.00 0.00 43.95 3.02
6258 8122 1.726853 GACAGATGGTCCGTTCAAGG 58.273 55.000 0.00 0.00 40.83 3.61
6259 8123 0.321653 ACAGATGGTCCGTTCAAGGC 60.322 55.000 0.00 0.00 0.00 4.35
6260 8124 1.079127 AGATGGTCCGTTCAAGGCG 60.079 57.895 0.00 0.00 0.00 5.52
6276 8140 4.020617 CGGTGGCCTCCTCAGCAA 62.021 66.667 21.24 0.00 33.34 3.91
6277 8141 2.045536 GGTGGCCTCCTCAGCAAG 60.046 66.667 16.91 0.00 33.34 4.01
6278 8142 2.753029 GTGGCCTCCTCAGCAAGT 59.247 61.111 3.32 0.00 0.00 3.16
6279 8143 1.376553 GTGGCCTCCTCAGCAAGTC 60.377 63.158 3.32 0.00 0.00 3.01
6280 8144 2.125350 GGCCTCCTCAGCAAGTCG 60.125 66.667 0.00 0.00 0.00 4.18
6281 8145 2.125350 GCCTCCTCAGCAAGTCGG 60.125 66.667 0.00 0.00 0.00 4.79
6282 8146 2.650116 GCCTCCTCAGCAAGTCGGA 61.650 63.158 0.00 0.00 0.00 4.55
6283 8147 1.975327 CCTCCTCAGCAAGTCGGAA 59.025 57.895 0.00 0.00 0.00 4.30
6284 8148 0.321671 CCTCCTCAGCAAGTCGGAAA 59.678 55.000 0.00 0.00 0.00 3.13
6285 8149 1.065854 CCTCCTCAGCAAGTCGGAAAT 60.066 52.381 0.00 0.00 0.00 2.17
6286 8150 2.168521 CCTCCTCAGCAAGTCGGAAATA 59.831 50.000 0.00 0.00 0.00 1.40
6287 8151 3.181461 CCTCCTCAGCAAGTCGGAAATAT 60.181 47.826 0.00 0.00 0.00 1.28
6288 8152 4.446371 CTCCTCAGCAAGTCGGAAATATT 58.554 43.478 0.00 0.00 0.00 1.28
6289 8153 4.191544 TCCTCAGCAAGTCGGAAATATTG 58.808 43.478 0.00 0.00 0.00 1.90
6290 8154 3.313526 CCTCAGCAAGTCGGAAATATTGG 59.686 47.826 0.00 0.00 0.00 3.16
6291 8155 4.191544 CTCAGCAAGTCGGAAATATTGGA 58.808 43.478 0.00 0.00 0.00 3.53
6292 8156 4.584874 TCAGCAAGTCGGAAATATTGGAA 58.415 39.130 0.00 0.00 0.00 3.53
6293 8157 4.635765 TCAGCAAGTCGGAAATATTGGAAG 59.364 41.667 0.00 0.00 0.00 3.46
6294 8158 3.947834 AGCAAGTCGGAAATATTGGAAGG 59.052 43.478 0.00 0.00 0.00 3.46
6295 8159 3.945285 GCAAGTCGGAAATATTGGAAGGA 59.055 43.478 0.00 0.00 0.00 3.36
6296 8160 4.035675 GCAAGTCGGAAATATTGGAAGGAG 59.964 45.833 0.00 0.00 0.00 3.69
6297 8161 4.423625 AGTCGGAAATATTGGAAGGAGG 57.576 45.455 0.00 0.00 0.00 4.30
6298 8162 2.879026 GTCGGAAATATTGGAAGGAGGC 59.121 50.000 0.00 0.00 0.00 4.70
6299 8163 2.158667 TCGGAAATATTGGAAGGAGGCC 60.159 50.000 0.00 0.00 0.00 5.19
6300 8164 2.598565 GGAAATATTGGAAGGAGGCCC 58.401 52.381 0.00 0.00 0.00 5.80
6301 8165 2.091333 GGAAATATTGGAAGGAGGCCCA 60.091 50.000 0.00 0.00 33.88 5.36
6302 8166 2.755952 AATATTGGAAGGAGGCCCAC 57.244 50.000 0.00 0.00 33.88 4.61
6303 8167 1.607225 ATATTGGAAGGAGGCCCACA 58.393 50.000 0.00 0.00 33.88 4.17
6304 8168 1.607225 TATTGGAAGGAGGCCCACAT 58.393 50.000 0.00 0.00 33.88 3.21
6305 8169 0.259938 ATTGGAAGGAGGCCCACATC 59.740 55.000 0.00 0.00 33.88 3.06
6306 8170 2.190578 GGAAGGAGGCCCACATCG 59.809 66.667 0.00 0.00 33.88 3.84
6307 8171 2.367202 GGAAGGAGGCCCACATCGA 61.367 63.158 0.00 0.00 33.88 3.59
6308 8172 1.144936 GAAGGAGGCCCACATCGAG 59.855 63.158 0.00 0.00 33.88 4.04
6309 8173 1.613630 AAGGAGGCCCACATCGAGT 60.614 57.895 0.00 0.00 33.88 4.18
6310 8174 0.325296 AAGGAGGCCCACATCGAGTA 60.325 55.000 0.00 0.00 33.88 2.59
6311 8175 0.105453 AGGAGGCCCACATCGAGTAT 60.105 55.000 0.00 0.00 33.88 2.12
6312 8176 0.759346 GGAGGCCCACATCGAGTATT 59.241 55.000 0.00 0.00 0.00 1.89
6313 8177 1.541233 GGAGGCCCACATCGAGTATTG 60.541 57.143 0.00 0.00 0.00 1.90
6314 8178 1.139058 GAGGCCCACATCGAGTATTGT 59.861 52.381 0.00 0.00 0.00 2.71
6315 8179 1.134401 AGGCCCACATCGAGTATTGTG 60.134 52.381 9.44 9.44 42.25 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
156 188 7.047891 CCACATGTCACTATTACAAGGTACAT 58.952 38.462 0.00 0.00 0.00 2.29
540 576 4.424626 CACATCGTGACTAGTACAATGCT 58.575 43.478 0.00 0.00 35.23 3.79
616 652 1.533338 GCCATGAAGCTGCAAATCTCG 60.533 52.381 0.00 0.00 0.00 4.04
701 737 2.171027 GGGAAGAGAGAGTACGGAGAGA 59.829 54.545 0.00 0.00 0.00 3.10
928 985 1.340248 TCGCGATAAACAGATCCCCTC 59.660 52.381 3.71 0.00 0.00 4.30
999 1058 4.041762 TTCCCGCCGGAAGCCATT 62.042 61.111 5.05 0.00 43.57 3.16
1035 1094 0.614697 TCACCTTCGATGGAGGCTGA 60.615 55.000 23.15 13.21 0.00 4.26
1110 1169 1.291877 CGACCTTGCCGAAGAGGTTG 61.292 60.000 5.28 4.91 46.01 3.77
1193 1252 6.201806 CGAAGATACAATCAAGGATCTGGAAC 59.798 42.308 0.00 0.00 0.00 3.62
1211 1270 5.779529 AGGCCGAAACTATAACGAAGATA 57.220 39.130 0.00 0.00 0.00 1.98
1236 1295 5.249393 ACTGACTCTCAACCCAAATACTCAT 59.751 40.000 0.00 0.00 0.00 2.90
1239 1298 5.568620 AACTGACTCTCAACCCAAATACT 57.431 39.130 0.00 0.00 0.00 2.12
1281 1340 3.339093 GAGGGAAGGGGTGGGTGG 61.339 72.222 0.00 0.00 0.00 4.61
1282 1341 2.204151 AGAGGGAAGGGGTGGGTG 60.204 66.667 0.00 0.00 0.00 4.61
1283 1342 2.125225 GAGAGGGAAGGGGTGGGT 59.875 66.667 0.00 0.00 0.00 4.51
1291 1350 1.202782 TCGATACGGGAGAGAGGGAAG 60.203 57.143 0.00 0.00 0.00 3.46
1292 1351 0.841961 TCGATACGGGAGAGAGGGAA 59.158 55.000 0.00 0.00 0.00 3.97
1293 1352 0.397187 CTCGATACGGGAGAGAGGGA 59.603 60.000 0.00 0.00 34.13 4.20
1299 1358 0.750546 CCCACACTCGATACGGGAGA 60.751 60.000 3.82 0.00 39.44 3.71
1322 1381 1.912971 GAACAGGACGCCCCCTTAT 59.087 57.895 0.00 0.00 33.38 1.73
1393 1452 5.664457 TCCTGTGCAAGATGTCTTATACAG 58.336 41.667 20.44 20.44 42.70 2.74
1394 1453 5.675684 TCCTGTGCAAGATGTCTTATACA 57.324 39.130 0.00 9.46 43.86 2.29
1395 1454 6.341316 TCTTCCTGTGCAAGATGTCTTATAC 58.659 40.000 0.00 0.00 34.28 1.47
1396 1455 6.544928 TCTTCCTGTGCAAGATGTCTTATA 57.455 37.500 0.00 0.00 34.28 0.98
1397 1456 5.426689 TCTTCCTGTGCAAGATGTCTTAT 57.573 39.130 0.00 0.00 34.28 1.73
1399 1458 3.777106 TCTTCCTGTGCAAGATGTCTT 57.223 42.857 0.00 0.00 36.45 3.01
1400 1459 3.777106 TTCTTCCTGTGCAAGATGTCT 57.223 42.857 0.00 0.00 29.89 3.41
1401 1460 3.057946 GGTTTCTTCCTGTGCAAGATGTC 60.058 47.826 0.00 0.00 29.89 3.06
1402 1461 2.887152 GGTTTCTTCCTGTGCAAGATGT 59.113 45.455 0.00 0.00 29.89 3.06
1403 1462 3.152341 AGGTTTCTTCCTGTGCAAGATG 58.848 45.455 0.00 0.00 36.35 2.90
1404 1463 3.515602 AGGTTTCTTCCTGTGCAAGAT 57.484 42.857 0.00 0.00 36.35 2.40
1405 1464 3.297134 AAGGTTTCTTCCTGTGCAAGA 57.703 42.857 0.00 0.00 37.93 3.02
1406 1465 4.580580 ACTAAAGGTTTCTTCCTGTGCAAG 59.419 41.667 0.00 0.00 37.93 4.01
1407 1466 4.532834 ACTAAAGGTTTCTTCCTGTGCAA 58.467 39.130 0.00 0.00 37.93 4.08
1408 1467 4.164843 ACTAAAGGTTTCTTCCTGTGCA 57.835 40.909 0.00 0.00 37.93 4.57
1506 1565 6.422776 TTCTTTTTCCTCGCATAATCAGTC 57.577 37.500 0.00 0.00 0.00 3.51
1530 1589 9.476928 ACCAAACTACAGTCTAGACTTGTATAT 57.523 33.333 23.01 14.77 40.20 0.86
1531 1590 8.874744 ACCAAACTACAGTCTAGACTTGTATA 57.125 34.615 23.01 11.64 40.20 1.47
1532 1591 7.778185 ACCAAACTACAGTCTAGACTTGTAT 57.222 36.000 23.01 11.13 40.20 2.29
1955 2014 3.845178 GTCATGATACTCCGTGACAACA 58.155 45.455 0.00 0.00 46.78 3.33
2119 2178 0.253207 GGAAGGGAAAGGGAGGGAGA 60.253 60.000 0.00 0.00 0.00 3.71
2130 2190 0.123266 ATGAAGGGGGAGGAAGGGAA 59.877 55.000 0.00 0.00 0.00 3.97
2266 2329 8.738645 ACTATCCTCACATCTTTATTTGTTCC 57.261 34.615 0.00 0.00 0.00 3.62
2299 2362 3.055094 GGTGGCTTTCTGGAGATAGTTGA 60.055 47.826 0.00 0.00 0.00 3.18
2444 2507 6.620678 ACAATGTATGCATGTTTAGTGGTTC 58.379 36.000 10.16 0.00 35.15 3.62
2467 2531 2.083774 TGAGGGCATGAAATCGTGAAC 58.916 47.619 6.81 0.00 34.90 3.18
2468 2532 2.488204 TGAGGGCATGAAATCGTGAA 57.512 45.000 6.81 0.00 34.90 3.18
2469 2533 2.488204 TTGAGGGCATGAAATCGTGA 57.512 45.000 6.81 0.00 34.90 4.35
2470 2534 3.788333 ATTTGAGGGCATGAAATCGTG 57.212 42.857 0.00 0.00 36.01 4.35
2471 2535 6.469782 AATTATTTGAGGGCATGAAATCGT 57.530 33.333 0.00 0.00 0.00 3.73
2472 2536 7.775397 AAAATTATTTGAGGGCATGAAATCG 57.225 32.000 0.00 0.00 0.00 3.34
2490 2554 6.695429 TGTGTGATGCTATTTGCCAAAATTA 58.305 32.000 0.00 0.00 42.00 1.40
2613 2677 6.761714 CCTTACCGATTAGCTGATGTACTTTT 59.238 38.462 0.00 0.00 0.00 2.27
2637 2701 2.270257 TGCACTGCATGTTGAGGCC 61.270 57.895 0.00 0.00 31.71 5.19
2654 2718 4.268405 GCACAAAGTGTTCAACAAAGGATG 59.732 41.667 0.00 0.00 35.75 3.51
2693 2757 5.105997 GGCATAAAGAATGACAGAAGCAGTT 60.106 40.000 0.00 0.00 43.87 3.16
2718 2782 6.151312 GGTATGTCAGTCACTTGAGACTAGAA 59.849 42.308 0.00 0.00 46.65 2.10
2749 2813 9.985730 ATTTAAAGCTCAATTGAACAGAATTGA 57.014 25.926 9.88 0.00 45.72 2.57
2786 2850 7.224557 GTGAGGAACTGTTAAAACAATTGCAAT 59.775 33.333 5.99 5.99 38.63 3.56
2808 2872 1.392853 GTCTTCGCATCAGCAAGTGAG 59.607 52.381 0.00 0.00 39.07 3.51
3055 3161 6.798427 TGAGGTCTTACTAGCAGATCATTT 57.202 37.500 5.75 0.00 0.00 2.32
3056 3162 6.798427 TTGAGGTCTTACTAGCAGATCATT 57.202 37.500 5.75 0.00 0.00 2.57
3072 3178 4.112634 GTTTGAAGGCAAGTTTTGAGGTC 58.887 43.478 0.00 0.00 35.04 3.85
3102 3208 3.006859 CCTCACTAACCATGACACTCACA 59.993 47.826 0.00 0.00 0.00 3.58
3162 3268 9.461312 AGTGCCACAAAGACTCAATTATAATAA 57.539 29.630 0.00 0.00 0.00 1.40
3163 3269 9.109393 GAGTGCCACAAAGACTCAATTATAATA 57.891 33.333 0.00 0.00 36.83 0.98
3164 3270 7.831193 AGAGTGCCACAAAGACTCAATTATAAT 59.169 33.333 0.00 0.00 38.90 1.28
3429 3535 5.552371 AGATTTGAGGGGATGATCAGATGAT 59.448 40.000 0.09 0.00 37.51 2.45
3445 3551 5.962433 AGAAACCATCATGCAAGATTTGAG 58.038 37.500 0.71 0.00 0.00 3.02
3811 3917 1.271054 ACGTTCAGGAAGCAGCAAGAT 60.271 47.619 0.00 0.00 0.00 2.40
3941 4047 3.253188 TCTTTCAACGCCAAAATGAGAGG 59.747 43.478 0.00 0.00 0.00 3.69
4318 4433 9.553418 GAGTTCTTCTCAAAAATAGCAATCTTC 57.447 33.333 0.00 0.00 42.34 2.87
4380 4495 7.897575 TTGAGTTTTGTGTACTTGCAATTTT 57.102 28.000 0.00 0.00 0.00 1.82
4411 4526 2.177531 GACATGCTGCACGCCAAG 59.822 61.111 3.57 0.00 38.05 3.61
4416 4531 1.136141 GTTTGAGAGACATGCTGCACG 60.136 52.381 3.57 0.00 0.00 5.34
4628 4744 5.192927 TGGTGCATCGAAATCTTTATTCCT 58.807 37.500 0.00 0.00 0.00 3.36
4743 4859 0.464452 CCCCAGTGTAATCTCGACCC 59.536 60.000 0.00 0.00 0.00 4.46
4776 4892 3.737559 ATGGAAGGTTCATGGTTAGCA 57.262 42.857 0.00 0.00 0.00 3.49
5064 5180 3.091545 GGGCATCTGTTGATTTCCTTGA 58.908 45.455 0.00 0.00 0.00 3.02
5274 5390 0.691078 GATACTGACCTCCCTGCCCA 60.691 60.000 0.00 0.00 0.00 5.36
5369 5517 0.034337 GGTCACCGGCAAGTACTCAA 59.966 55.000 0.00 0.00 0.00 3.02
5370 5518 1.116536 TGGTCACCGGCAAGTACTCA 61.117 55.000 0.00 0.00 0.00 3.41
5458 5607 8.757164 TCACTACAGAATAATTATGTATGCCG 57.243 34.615 0.00 0.00 0.00 5.69
5572 5721 2.290450 CCCTCGCCAGGTTAGGTTAAAA 60.290 50.000 0.00 0.00 38.30 1.52
5639 5789 2.853281 GCTGCTGTGACGTTTTAACCAC 60.853 50.000 0.00 0.00 0.00 4.16
5681 5831 8.632906 TTGTGCTAGAGTTACTCTAAACTACT 57.367 34.615 20.78 0.00 41.74 2.57
5701 5851 3.199880 ACCATACAGAGGCTATTGTGC 57.800 47.619 12.85 0.00 0.00 4.57
5726 7590 6.193504 GGAGTAGAACTTTTAGAGACCCCTA 58.806 44.000 0.00 0.00 0.00 3.53
5738 7602 9.453830 AATATGGATTAGAGGGAGTAGAACTTT 57.546 33.333 0.00 0.00 0.00 2.66
5747 7611 9.467796 GGGAAAATTAATATGGATTAGAGGGAG 57.532 37.037 0.00 0.00 0.00 4.30
5748 7612 8.398743 GGGGAAAATTAATATGGATTAGAGGGA 58.601 37.037 0.00 0.00 0.00 4.20
5749 7613 7.339466 CGGGGAAAATTAATATGGATTAGAGGG 59.661 40.741 0.00 0.00 0.00 4.30
5750 7614 8.107095 TCGGGGAAAATTAATATGGATTAGAGG 58.893 37.037 0.00 0.00 0.00 3.69
5751 7615 9.686683 ATCGGGGAAAATTAATATGGATTAGAG 57.313 33.333 0.00 0.00 0.00 2.43
5765 7629 9.430623 CTTTGTTGTATTAAATCGGGGAAAATT 57.569 29.630 0.00 0.00 0.00 1.82
5766 7630 8.590204 ACTTTGTTGTATTAAATCGGGGAAAAT 58.410 29.630 0.00 0.00 0.00 1.82
5767 7631 7.953752 ACTTTGTTGTATTAAATCGGGGAAAA 58.046 30.769 0.00 0.00 0.00 2.29
5768 7632 7.527568 ACTTTGTTGTATTAAATCGGGGAAA 57.472 32.000 0.00 0.00 0.00 3.13
5769 7633 7.014422 ACAACTTTGTTGTATTAAATCGGGGAA 59.986 33.333 13.51 0.00 38.47 3.97
5784 7648 7.858382 TGTCACCGATTTAATACAACTTTGTTG 59.142 33.333 8.66 8.66 42.35 3.33
5804 7668 6.149474 CCCTTCGATCCATATTAATTGTCACC 59.851 42.308 0.00 0.00 0.00 4.02
5806 7670 7.073457 TCCCTTCGATCCATATTAATTGTCA 57.927 36.000 0.00 0.00 0.00 3.58
5852 7716 8.970859 AAATGACTGATAGTTTCTAATCTGGG 57.029 34.615 0.00 0.00 0.00 4.45
5869 7733 8.722480 AAAGGAAAAGAAAAGGAAAATGACTG 57.278 30.769 0.00 0.00 0.00 3.51
5870 7734 8.762645 AGAAAGGAAAAGAAAAGGAAAATGACT 58.237 29.630 0.00 0.00 0.00 3.41
5888 7752 6.239629 GGACAGGAAGAGTAGAAAGAAAGGAA 60.240 42.308 0.00 0.00 0.00 3.36
5890 7754 5.012148 TGGACAGGAAGAGTAGAAAGAAAGG 59.988 44.000 0.00 0.00 0.00 3.11
5891 7755 6.102897 TGGACAGGAAGAGTAGAAAGAAAG 57.897 41.667 0.00 0.00 0.00 2.62
5892 7756 6.498651 AGATGGACAGGAAGAGTAGAAAGAAA 59.501 38.462 0.00 0.00 0.00 2.52
5894 7758 5.584913 AGATGGACAGGAAGAGTAGAAAGA 58.415 41.667 0.00 0.00 0.00 2.52
5897 7761 4.467795 CCAAGATGGACAGGAAGAGTAGAA 59.532 45.833 0.00 0.00 40.96 2.10
5899 7763 3.133721 CCCAAGATGGACAGGAAGAGTAG 59.866 52.174 0.00 0.00 40.96 2.57
5901 7765 1.912043 CCCAAGATGGACAGGAAGAGT 59.088 52.381 0.00 0.00 40.96 3.24
5902 7766 2.170187 CTCCCAAGATGGACAGGAAGAG 59.830 54.545 0.00 0.00 40.96 2.85
5903 7767 2.191400 CTCCCAAGATGGACAGGAAGA 58.809 52.381 0.00 0.00 40.96 2.87
5904 7768 1.211457 CCTCCCAAGATGGACAGGAAG 59.789 57.143 8.07 0.00 40.96 3.46
5905 7769 1.289160 CCTCCCAAGATGGACAGGAA 58.711 55.000 8.07 0.00 40.96 3.36
5906 7770 1.274703 GCCTCCCAAGATGGACAGGA 61.275 60.000 15.03 0.00 40.96 3.86
5907 7771 1.225704 GCCTCCCAAGATGGACAGG 59.774 63.158 9.05 9.05 40.96 4.00
5943 7807 0.397114 TCAGCCTTATCTCGCTCCCA 60.397 55.000 0.00 0.00 31.40 4.37
5949 7813 4.692625 CCCATTACAATCAGCCTTATCTCG 59.307 45.833 0.00 0.00 0.00 4.04
5950 7814 5.869579 TCCCATTACAATCAGCCTTATCTC 58.130 41.667 0.00 0.00 0.00 2.75
5951 7815 5.370880 ACTCCCATTACAATCAGCCTTATCT 59.629 40.000 0.00 0.00 0.00 1.98
5952 7816 5.625150 ACTCCCATTACAATCAGCCTTATC 58.375 41.667 0.00 0.00 0.00 1.75
5953 7817 5.653255 ACTCCCATTACAATCAGCCTTAT 57.347 39.130 0.00 0.00 0.00 1.73
5954 7818 6.328934 TGATACTCCCATTACAATCAGCCTTA 59.671 38.462 0.00 0.00 0.00 2.69
5955 7819 5.132648 TGATACTCCCATTACAATCAGCCTT 59.867 40.000 0.00 0.00 0.00 4.35
5956 7820 4.660303 TGATACTCCCATTACAATCAGCCT 59.340 41.667 0.00 0.00 0.00 4.58
5957 7821 4.973168 TGATACTCCCATTACAATCAGCC 58.027 43.478 0.00 0.00 0.00 4.85
5958 7822 6.820656 CCTATGATACTCCCATTACAATCAGC 59.179 42.308 0.00 0.00 0.00 4.26
5959 7823 7.911651 ACCTATGATACTCCCATTACAATCAG 58.088 38.462 0.00 0.00 0.00 2.90
5960 7824 7.872061 ACCTATGATACTCCCATTACAATCA 57.128 36.000 0.00 0.00 0.00 2.57
5961 7825 9.036980 ACTACCTATGATACTCCCATTACAATC 57.963 37.037 0.00 0.00 0.00 2.67
5962 7826 8.974292 ACTACCTATGATACTCCCATTACAAT 57.026 34.615 0.00 0.00 0.00 2.71
5964 7828 9.696572 GATACTACCTATGATACTCCCATTACA 57.303 37.037 0.00 0.00 0.00 2.41
5965 7829 9.696572 TGATACTACCTATGATACTCCCATTAC 57.303 37.037 0.00 0.00 0.00 1.89
5967 7831 9.206690 CATGATACTACCTATGATACTCCCATT 57.793 37.037 0.00 0.00 0.00 3.16
5968 7832 7.288852 GCATGATACTACCTATGATACTCCCAT 59.711 40.741 0.00 0.00 0.00 4.00
5969 7833 6.607600 GCATGATACTACCTATGATACTCCCA 59.392 42.308 0.00 0.00 0.00 4.37
5970 7834 6.607600 TGCATGATACTACCTATGATACTCCC 59.392 42.308 0.00 0.00 0.00 4.30
5971 7835 7.646548 TGCATGATACTACCTATGATACTCC 57.353 40.000 0.00 0.00 0.00 3.85
5972 7836 7.651304 GCATGCATGATACTACCTATGATACTC 59.349 40.741 30.64 1.38 0.00 2.59
5973 7837 7.418368 GGCATGCATGATACTACCTATGATACT 60.418 40.741 30.64 0.00 0.00 2.12
5974 7838 6.703607 GGCATGCATGATACTACCTATGATAC 59.296 42.308 30.64 5.71 0.00 2.24
5975 7839 6.383726 TGGCATGCATGATACTACCTATGATA 59.616 38.462 30.64 0.87 0.00 2.15
5976 7840 5.190330 TGGCATGCATGATACTACCTATGAT 59.810 40.000 30.64 0.00 0.00 2.45
5977 7841 4.531732 TGGCATGCATGATACTACCTATGA 59.468 41.667 30.64 1.93 0.00 2.15
5978 7842 4.835678 TGGCATGCATGATACTACCTATG 58.164 43.478 30.64 0.23 0.00 2.23
5979 7843 5.013495 AGTTGGCATGCATGATACTACCTAT 59.987 40.000 30.64 7.77 0.00 2.57
5980 7844 4.347876 AGTTGGCATGCATGATACTACCTA 59.652 41.667 30.64 13.97 0.00 3.08
5981 7845 3.137176 AGTTGGCATGCATGATACTACCT 59.863 43.478 30.64 11.98 0.00 3.08
5982 7846 3.480470 AGTTGGCATGCATGATACTACC 58.520 45.455 30.64 19.65 0.00 3.18
5983 7847 5.406780 GTCTAGTTGGCATGCATGATACTAC 59.593 44.000 30.64 22.16 0.00 2.73
5984 7848 5.070313 TGTCTAGTTGGCATGCATGATACTA 59.930 40.000 30.64 25.87 0.00 1.82
5985 7849 4.141642 TGTCTAGTTGGCATGCATGATACT 60.142 41.667 30.64 26.11 0.00 2.12
5986 7850 4.129380 TGTCTAGTTGGCATGCATGATAC 58.871 43.478 30.64 21.28 0.00 2.24
5987 7851 4.420522 TGTCTAGTTGGCATGCATGATA 57.579 40.909 30.64 14.66 0.00 2.15
5988 7852 3.286329 TGTCTAGTTGGCATGCATGAT 57.714 42.857 30.64 11.73 0.00 2.45
5989 7853 2.749076 GTTGTCTAGTTGGCATGCATGA 59.251 45.455 30.64 7.50 0.00 3.07
5990 7854 2.751259 AGTTGTCTAGTTGGCATGCATG 59.249 45.455 22.70 22.70 0.00 4.06
5991 7855 3.077484 AGTTGTCTAGTTGGCATGCAT 57.923 42.857 21.36 4.57 0.00 3.96
5992 7856 2.566833 AGTTGTCTAGTTGGCATGCA 57.433 45.000 21.36 2.54 0.00 3.96
5993 7857 3.923017 AAAGTTGTCTAGTTGGCATGC 57.077 42.857 9.90 9.90 0.00 4.06
5994 7858 7.144722 TCATTAAAGTTGTCTAGTTGGCATG 57.855 36.000 0.00 0.00 0.00 4.06
5995 7859 6.375455 CCTCATTAAAGTTGTCTAGTTGGCAT 59.625 38.462 0.00 0.00 0.00 4.40
5996 7860 5.705441 CCTCATTAAAGTTGTCTAGTTGGCA 59.295 40.000 0.00 0.00 0.00 4.92
5997 7861 5.705905 ACCTCATTAAAGTTGTCTAGTTGGC 59.294 40.000 0.00 0.00 0.00 4.52
5998 7862 6.149474 CCACCTCATTAAAGTTGTCTAGTTGG 59.851 42.308 0.00 0.00 0.00 3.77
5999 7863 6.348540 GCCACCTCATTAAAGTTGTCTAGTTG 60.349 42.308 0.00 0.00 0.00 3.16
6000 7864 5.705905 GCCACCTCATTAAAGTTGTCTAGTT 59.294 40.000 0.00 0.00 0.00 2.24
6001 7865 5.221843 TGCCACCTCATTAAAGTTGTCTAGT 60.222 40.000 0.00 0.00 0.00 2.57
6002 7866 5.245531 TGCCACCTCATTAAAGTTGTCTAG 58.754 41.667 0.00 0.00 0.00 2.43
6003 7867 5.235850 TGCCACCTCATTAAAGTTGTCTA 57.764 39.130 0.00 0.00 0.00 2.59
6004 7868 4.098914 TGCCACCTCATTAAAGTTGTCT 57.901 40.909 0.00 0.00 0.00 3.41
6005 7869 5.880332 TCTATGCCACCTCATTAAAGTTGTC 59.120 40.000 0.00 0.00 0.00 3.18
6006 7870 5.815581 TCTATGCCACCTCATTAAAGTTGT 58.184 37.500 0.00 0.00 0.00 3.32
6007 7871 6.757897 TTCTATGCCACCTCATTAAAGTTG 57.242 37.500 0.00 0.00 0.00 3.16
6008 7872 7.961326 AATTCTATGCCACCTCATTAAAGTT 57.039 32.000 0.00 0.00 0.00 2.66
6009 7873 9.474313 TTTAATTCTATGCCACCTCATTAAAGT 57.526 29.630 0.00 0.00 0.00 2.66
6012 7876 9.639563 TCATTTAATTCTATGCCACCTCATTAA 57.360 29.630 0.00 0.00 0.00 1.40
6013 7877 9.639563 TTCATTTAATTCTATGCCACCTCATTA 57.360 29.630 0.00 0.00 0.00 1.90
6014 7878 8.537728 TTCATTTAATTCTATGCCACCTCATT 57.462 30.769 0.00 0.00 0.00 2.57
6015 7879 8.537728 TTTCATTTAATTCTATGCCACCTCAT 57.462 30.769 0.00 0.00 0.00 2.90
6016 7880 7.953005 TTTCATTTAATTCTATGCCACCTCA 57.047 32.000 0.00 0.00 0.00 3.86
6042 7906 9.544579 TCATGATATGATACTCAATCCTCTCTT 57.455 33.333 0.00 0.00 33.59 2.85
6070 7934 9.856488 CTAGTGTAGCATTTATTATGATACGGT 57.144 33.333 8.18 0.00 42.05 4.83
6071 7935 9.856488 ACTAGTGTAGCATTTATTATGATACGG 57.144 33.333 0.00 2.94 42.05 4.02
6088 7952 8.164240 TGCCATGCATAACACATACTAGTGTAG 61.164 40.741 5.39 0.00 42.07 2.74
6089 7953 6.407525 TGCCATGCATAACACATACTAGTGTA 60.408 38.462 5.39 0.00 42.07 2.90
6090 7954 5.628899 TGCCATGCATAACACATACTAGTGT 60.629 40.000 5.39 0.00 43.61 3.55
6091 7955 4.815846 TGCCATGCATAACACATACTAGTG 59.184 41.667 5.39 0.00 38.43 2.74
6092 7956 5.034852 TGCCATGCATAACACATACTAGT 57.965 39.130 0.00 0.00 31.71 2.57
6093 7957 6.564709 ATTGCCATGCATAACACATACTAG 57.435 37.500 0.00 0.00 38.76 2.57
6094 7958 8.457238 TTTATTGCCATGCATAACACATACTA 57.543 30.769 0.00 0.00 38.76 1.82
6095 7959 6.957920 TTATTGCCATGCATAACACATACT 57.042 33.333 0.00 0.00 38.76 2.12
6096 7960 9.689976 TTATTTATTGCCATGCATAACACATAC 57.310 29.630 0.00 0.00 38.76 2.39
6098 7962 9.263538 CTTTATTTATTGCCATGCATAACACAT 57.736 29.630 0.00 0.86 38.76 3.21
6099 7963 8.256605 ACTTTATTTATTGCCATGCATAACACA 58.743 29.630 0.00 0.00 38.76 3.72
6100 7964 8.647143 ACTTTATTTATTGCCATGCATAACAC 57.353 30.769 0.00 0.00 38.76 3.32
6101 7965 8.473219 TGACTTTATTTATTGCCATGCATAACA 58.527 29.630 0.00 0.00 38.76 2.41
6102 7966 8.870160 TGACTTTATTTATTGCCATGCATAAC 57.130 30.769 0.00 0.00 38.76 1.89
6103 7967 9.695526 GATGACTTTATTTATTGCCATGCATAA 57.304 29.630 0.00 0.00 38.76 1.90
6104 7968 9.081204 AGATGACTTTATTTATTGCCATGCATA 57.919 29.630 0.00 0.00 38.76 3.14
6105 7969 7.959175 AGATGACTTTATTTATTGCCATGCAT 58.041 30.769 0.00 0.00 38.76 3.96
6106 7970 7.350744 AGATGACTTTATTTATTGCCATGCA 57.649 32.000 0.00 0.00 36.47 3.96
6107 7971 9.350357 CATAGATGACTTTATTTATTGCCATGC 57.650 33.333 0.00 0.00 0.00 4.06
6139 8003 9.373450 CCTCCCTAATGCATAGTATCATATAGT 57.627 37.037 0.00 0.00 0.00 2.12
6140 8004 9.373450 ACCTCCCTAATGCATAGTATCATATAG 57.627 37.037 0.00 0.00 0.00 1.31
6142 8006 9.373450 CTACCTCCCTAATGCATAGTATCATAT 57.627 37.037 0.00 0.00 0.00 1.78
6143 8007 8.344546 ACTACCTCCCTAATGCATAGTATCATA 58.655 37.037 0.00 0.00 0.00 2.15
6144 8008 7.192628 ACTACCTCCCTAATGCATAGTATCAT 58.807 38.462 0.00 0.00 0.00 2.45
6145 8009 6.562228 ACTACCTCCCTAATGCATAGTATCA 58.438 40.000 0.00 0.00 0.00 2.15
6146 8010 8.770010 ATACTACCTCCCTAATGCATAGTATC 57.230 38.462 0.00 0.00 31.76 2.24
6147 8011 8.344546 TGATACTACCTCCCTAATGCATAGTAT 58.655 37.037 11.08 11.08 37.18 2.12
6148 8012 7.705700 TGATACTACCTCCCTAATGCATAGTA 58.294 38.462 0.00 0.81 0.00 1.82
6149 8013 6.562228 TGATACTACCTCCCTAATGCATAGT 58.438 40.000 0.00 0.00 0.00 2.12
6150 8014 7.667575 ATGATACTACCTCCCTAATGCATAG 57.332 40.000 0.00 0.00 0.00 2.23
6152 8016 9.148879 GTATATGATACTACCTCCCTAATGCAT 57.851 37.037 0.00 0.00 0.00 3.96
6153 8017 8.344546 AGTATATGATACTACCTCCCTAATGCA 58.655 37.037 0.00 0.00 0.00 3.96
6154 8018 8.770010 AGTATATGATACTACCTCCCTAATGC 57.230 38.462 0.00 0.00 0.00 3.56
6200 8064 8.774183 TGGTTGTAATGGGTAGTATCATAAGTT 58.226 33.333 0.00 0.00 0.00 2.66
6201 8065 8.326765 TGGTTGTAATGGGTAGTATCATAAGT 57.673 34.615 0.00 0.00 0.00 2.24
6202 8066 7.387948 GCTGGTTGTAATGGGTAGTATCATAAG 59.612 40.741 0.00 0.00 0.00 1.73
6203 8067 7.221450 GCTGGTTGTAATGGGTAGTATCATAA 58.779 38.462 0.00 0.00 0.00 1.90
6204 8068 6.239772 GGCTGGTTGTAATGGGTAGTATCATA 60.240 42.308 0.00 0.00 0.00 2.15
6205 8069 5.456186 GGCTGGTTGTAATGGGTAGTATCAT 60.456 44.000 0.00 0.00 0.00 2.45
6206 8070 4.141574 GGCTGGTTGTAATGGGTAGTATCA 60.142 45.833 0.00 0.00 0.00 2.15
6207 8071 4.102681 AGGCTGGTTGTAATGGGTAGTATC 59.897 45.833 0.00 0.00 0.00 2.24
6208 8072 4.045022 AGGCTGGTTGTAATGGGTAGTAT 58.955 43.478 0.00 0.00 0.00 2.12
6209 8073 3.456842 AGGCTGGTTGTAATGGGTAGTA 58.543 45.455 0.00 0.00 0.00 1.82
6210 8074 2.275466 AGGCTGGTTGTAATGGGTAGT 58.725 47.619 0.00 0.00 0.00 2.73
6211 8075 4.451900 CTTAGGCTGGTTGTAATGGGTAG 58.548 47.826 0.00 0.00 0.00 3.18
6212 8076 3.201266 CCTTAGGCTGGTTGTAATGGGTA 59.799 47.826 0.00 0.00 0.00 3.69
6213 8077 2.025321 CCTTAGGCTGGTTGTAATGGGT 60.025 50.000 0.00 0.00 0.00 4.51
6214 8078 2.241176 TCCTTAGGCTGGTTGTAATGGG 59.759 50.000 0.00 0.00 0.00 4.00
6215 8079 3.279434 GTCCTTAGGCTGGTTGTAATGG 58.721 50.000 0.00 0.00 0.00 3.16
6216 8080 3.689649 GTGTCCTTAGGCTGGTTGTAATG 59.310 47.826 0.00 0.00 0.00 1.90
6217 8081 3.618997 CGTGTCCTTAGGCTGGTTGTAAT 60.619 47.826 0.00 0.00 0.00 1.89
6218 8082 2.289195 CGTGTCCTTAGGCTGGTTGTAA 60.289 50.000 0.00 0.00 0.00 2.41
6219 8083 1.274167 CGTGTCCTTAGGCTGGTTGTA 59.726 52.381 0.00 0.00 0.00 2.41
6220 8084 0.034896 CGTGTCCTTAGGCTGGTTGT 59.965 55.000 0.00 0.00 0.00 3.32
6221 8085 0.320374 TCGTGTCCTTAGGCTGGTTG 59.680 55.000 0.00 0.00 0.00 3.77
6222 8086 0.320697 GTCGTGTCCTTAGGCTGGTT 59.679 55.000 0.00 0.00 0.00 3.67
6223 8087 0.830444 TGTCGTGTCCTTAGGCTGGT 60.830 55.000 0.00 0.00 0.00 4.00
6224 8088 0.108615 CTGTCGTGTCCTTAGGCTGG 60.109 60.000 0.00 0.00 0.00 4.85
6225 8089 0.888619 TCTGTCGTGTCCTTAGGCTG 59.111 55.000 0.00 0.00 0.00 4.85
6226 8090 1.478510 CATCTGTCGTGTCCTTAGGCT 59.521 52.381 0.00 0.00 0.00 4.58
6227 8091 1.471676 CCATCTGTCGTGTCCTTAGGC 60.472 57.143 0.00 0.00 0.00 3.93
6228 8092 1.825474 ACCATCTGTCGTGTCCTTAGG 59.175 52.381 0.00 0.00 0.00 2.69
6229 8093 2.159226 GGACCATCTGTCGTGTCCTTAG 60.159 54.545 0.00 0.00 45.46 2.18
6230 8094 1.822990 GGACCATCTGTCGTGTCCTTA 59.177 52.381 0.00 0.00 45.46 2.69
6231 8095 0.608640 GGACCATCTGTCGTGTCCTT 59.391 55.000 0.00 0.00 45.46 3.36
6232 8096 1.595993 CGGACCATCTGTCGTGTCCT 61.596 60.000 6.03 0.00 45.46 3.85
6233 8097 1.153823 CGGACCATCTGTCGTGTCC 60.154 63.158 0.00 0.00 45.46 4.02
6234 8098 0.038526 AACGGACCATCTGTCGTGTC 60.039 55.000 0.00 0.00 45.46 3.67
6235 8099 0.038526 GAACGGACCATCTGTCGTGT 60.039 55.000 0.00 0.00 45.46 4.49
6236 8100 0.038618 TGAACGGACCATCTGTCGTG 60.039 55.000 0.00 0.00 45.46 4.35
6237 8101 0.677288 TTGAACGGACCATCTGTCGT 59.323 50.000 0.00 0.00 45.46 4.34
6238 8102 1.350193 CTTGAACGGACCATCTGTCG 58.650 55.000 0.00 0.00 45.46 4.35
6239 8103 1.726853 CCTTGAACGGACCATCTGTC 58.273 55.000 0.00 0.00 43.67 3.51
6240 8104 0.321653 GCCTTGAACGGACCATCTGT 60.322 55.000 0.00 0.00 37.65 3.41
6241 8105 1.361668 CGCCTTGAACGGACCATCTG 61.362 60.000 0.00 0.00 0.00 2.90
6242 8106 1.079127 CGCCTTGAACGGACCATCT 60.079 57.895 0.00 0.00 0.00 2.90
6243 8107 3.486263 CGCCTTGAACGGACCATC 58.514 61.111 0.00 0.00 0.00 3.51
6259 8123 3.965539 CTTGCTGAGGAGGCCACCG 62.966 68.421 14.10 0.58 34.73 4.94
6260 8124 2.045536 CTTGCTGAGGAGGCCACC 60.046 66.667 11.96 11.96 0.00 4.61
6261 8125 1.376553 GACTTGCTGAGGAGGCCAC 60.377 63.158 5.01 0.00 0.00 5.01
6262 8126 2.947532 CGACTTGCTGAGGAGGCCA 61.948 63.158 5.01 0.00 0.00 5.36
6263 8127 2.125350 CGACTTGCTGAGGAGGCC 60.125 66.667 0.00 0.00 0.00 5.19
6264 8128 2.125350 CCGACTTGCTGAGGAGGC 60.125 66.667 0.00 0.00 0.00 4.70
6265 8129 0.321671 TTTCCGACTTGCTGAGGAGG 59.678 55.000 0.00 0.00 33.89 4.30
6266 8130 2.393271 ATTTCCGACTTGCTGAGGAG 57.607 50.000 0.00 0.00 33.89 3.69
6267 8131 4.191544 CAATATTTCCGACTTGCTGAGGA 58.808 43.478 0.00 0.00 0.00 3.71
6268 8132 3.313526 CCAATATTTCCGACTTGCTGAGG 59.686 47.826 0.00 0.00 0.00 3.86
6269 8133 4.191544 TCCAATATTTCCGACTTGCTGAG 58.808 43.478 0.00 0.00 0.00 3.35
6270 8134 4.214986 TCCAATATTTCCGACTTGCTGA 57.785 40.909 0.00 0.00 0.00 4.26
6271 8135 4.201950 CCTTCCAATATTTCCGACTTGCTG 60.202 45.833 0.00 0.00 0.00 4.41
6272 8136 3.947834 CCTTCCAATATTTCCGACTTGCT 59.052 43.478 0.00 0.00 0.00 3.91
6273 8137 3.945285 TCCTTCCAATATTTCCGACTTGC 59.055 43.478 0.00 0.00 0.00 4.01
6274 8138 4.576463 CCTCCTTCCAATATTTCCGACTTG 59.424 45.833 0.00 0.00 0.00 3.16
6275 8139 4.781934 CCTCCTTCCAATATTTCCGACTT 58.218 43.478 0.00 0.00 0.00 3.01
6276 8140 3.433740 GCCTCCTTCCAATATTTCCGACT 60.434 47.826 0.00 0.00 0.00 4.18
6277 8141 2.879026 GCCTCCTTCCAATATTTCCGAC 59.121 50.000 0.00 0.00 0.00 4.79
6278 8142 2.158667 GGCCTCCTTCCAATATTTCCGA 60.159 50.000 0.00 0.00 0.00 4.55
6279 8143 2.230660 GGCCTCCTTCCAATATTTCCG 58.769 52.381 0.00 0.00 0.00 4.30
6280 8144 2.091333 TGGGCCTCCTTCCAATATTTCC 60.091 50.000 4.53 0.00 0.00 3.13
6281 8145 2.959030 GTGGGCCTCCTTCCAATATTTC 59.041 50.000 4.53 0.00 34.47 2.17
6282 8146 2.314549 TGTGGGCCTCCTTCCAATATTT 59.685 45.455 4.53 0.00 34.47 1.40
6283 8147 1.929494 TGTGGGCCTCCTTCCAATATT 59.071 47.619 4.53 0.00 34.47 1.28
6284 8148 1.607225 TGTGGGCCTCCTTCCAATAT 58.393 50.000 4.53 0.00 34.47 1.28
6285 8149 1.494721 GATGTGGGCCTCCTTCCAATA 59.505 52.381 4.53 0.00 34.47 1.90
6286 8150 0.259938 GATGTGGGCCTCCTTCCAAT 59.740 55.000 4.53 0.00 34.47 3.16
6287 8151 1.691219 GATGTGGGCCTCCTTCCAA 59.309 57.895 4.53 0.00 34.47 3.53
6288 8152 2.669133 CGATGTGGGCCTCCTTCCA 61.669 63.158 4.53 0.00 0.00 3.53
6289 8153 2.190578 CGATGTGGGCCTCCTTCC 59.809 66.667 4.53 0.00 0.00 3.46
6290 8154 1.144936 CTCGATGTGGGCCTCCTTC 59.855 63.158 4.53 2.46 0.00 3.46
6291 8155 0.325296 TACTCGATGTGGGCCTCCTT 60.325 55.000 4.53 0.00 0.00 3.36
6292 8156 0.105453 ATACTCGATGTGGGCCTCCT 60.105 55.000 4.53 0.00 0.00 3.69
6293 8157 0.759346 AATACTCGATGTGGGCCTCC 59.241 55.000 4.53 0.00 0.00 4.30
6294 8158 1.139058 ACAATACTCGATGTGGGCCTC 59.861 52.381 4.53 0.49 0.00 4.70
6295 8159 1.134401 CACAATACTCGATGTGGGCCT 60.134 52.381 4.53 0.00 42.46 5.19
6296 8160 1.299541 CACAATACTCGATGTGGGCC 58.700 55.000 8.67 0.00 42.46 5.80
6312 8176 0.322098 CCGCCCTCATTGTTACCACA 60.322 55.000 0.00 0.00 0.00 4.17
6313 8177 2.477880 CCGCCCTCATTGTTACCAC 58.522 57.895 0.00 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.