Multiple sequence alignment - TraesCS3B01G252900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G252900 chr3B 100.000 8164 0 0 1 8164 405958822 405950659 0.000000e+00 15077.0
1 TraesCS3B01G252900 chr3D 96.358 3707 90 15 4288 7965 313605191 313608881 0.000000e+00 6056.0
2 TraesCS3B01G252900 chr3D 91.797 1987 112 21 2 1961 313600217 313602179 0.000000e+00 2719.0
3 TraesCS3B01G252900 chr3D 97.529 1295 29 3 1954 3246 313602419 313603712 0.000000e+00 2211.0
4 TraesCS3B01G252900 chr3D 97.522 1009 20 4 3273 4278 313603873 313604879 0.000000e+00 1720.0
5 TraesCS3B01G252900 chr3D 92.417 211 13 1 7957 8164 313609864 313610074 1.720000e-76 298.0
6 TraesCS3B01G252900 chr3D 85.000 280 29 6 6 277 466683370 466683096 1.040000e-68 272.0
7 TraesCS3B01G252900 chr3D 85.227 88 9 4 3252 3335 303792761 303792848 4.060000e-13 87.9
8 TraesCS3B01G252900 chr3A 95.932 3712 109 21 4283 7965 416130083 416133781 0.000000e+00 5980.0
9 TraesCS3B01G252900 chr3A 96.288 1347 45 3 1018 2364 416126923 416128264 0.000000e+00 2206.0
10 TraesCS3B01G252900 chr3A 96.751 954 25 5 3336 4286 416129046 416129996 0.000000e+00 1585.0
11 TraesCS3B01G252900 chr3A 96.181 864 27 5 2369 3229 416128201 416129061 0.000000e+00 1408.0
12 TraesCS3B01G252900 chr3A 97.113 485 13 1 530 1014 416126102 416126585 0.000000e+00 817.0
13 TraesCS3B01G252900 chr3A 85.426 446 43 3 2 425 416124634 416125079 2.090000e-120 444.0
14 TraesCS3B01G252900 chr3A 95.714 70 2 1 8095 8164 416135087 416135155 2.410000e-20 111.0
15 TraesCS3B01G252900 chr5D 87.410 278 28 5 6 277 376718109 376718385 6.150000e-81 313.0
16 TraesCS3B01G252900 chr5D 84.669 287 33 4 2 277 455746103 455746389 8.070000e-70 276.0
17 TraesCS3B01G252900 chr5D 83.214 280 35 7 6 275 134481635 134481358 6.330000e-61 246.0
18 TraesCS3B01G252900 chr5B 86.071 280 32 4 6 279 275005268 275005546 2.230000e-75 294.0
19 TraesCS3B01G252900 chr5B 78.191 188 27 6 285 469 532770427 532770603 3.120000e-19 108.0
20 TraesCS3B01G252900 chr1D 85.662 272 28 4 11 277 450751637 450751902 8.070000e-70 276.0
21 TraesCS3B01G252900 chr4B 84.364 275 30 7 11 277 44831590 44831859 2.920000e-64 257.0
22 TraesCS3B01G252900 chr7A 96.970 66 2 0 3268 3333 536982262 536982327 2.410000e-20 111.0
23 TraesCS3B01G252900 chr6D 95.082 61 3 0 3274 3334 472379945 472379885 6.740000e-16 97.1
24 TraesCS3B01G252900 chr4A 92.500 40 3 0 8113 8152 582851107 582851068 3.180000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G252900 chr3B 405950659 405958822 8163 True 15077.0 15077 100.000000 1 8164 1 chr3B.!!$R1 8163
1 TraesCS3B01G252900 chr3D 313600217 313610074 9857 False 2600.8 6056 95.124600 2 8164 5 chr3D.!!$F2 8162
2 TraesCS3B01G252900 chr3A 416124634 416135155 10521 False 1793.0 5980 94.772143 2 8164 7 chr3A.!!$F1 8162

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
698 1654 0.753479 AGCAGAGTCCCATCGACGAT 60.753 55.000 4.05 4.05 46.92 3.73 F
2129 3671 1.537202 GAGCAAAGAAGTCATGCGGTT 59.463 47.619 0.00 0.00 44.60 4.44 F
2373 3982 0.310543 TGGCACTTGACAAACGATGC 59.689 50.000 0.00 5.31 0.00 3.91 F
2374 3983 0.310543 GGCACTTGACAAACGATGCA 59.689 50.000 12.67 0.00 34.73 3.96 F
2377 3986 1.265095 CACTTGACAAACGATGCAGCT 59.735 47.619 0.00 0.00 0.00 4.24 F
3254 4865 1.562475 TCATGTAGCCTTGTAACCCCC 59.438 52.381 0.00 0.00 0.00 5.40 F
3971 5717 1.133790 GTCAAAGGCTGTGATGATGCC 59.866 52.381 11.24 0.00 46.42 4.40 F
4882 6958 3.614092 CTTAGCTCCAGCATTTCCTTCA 58.386 45.455 0.48 0.00 45.16 3.02 F
5920 8008 3.408288 GTGAGACTCATACCGACTCAC 57.592 52.381 8.73 0.00 46.16 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2367 3976 1.949525 ACAGTTTTCAAGCTGCATCGT 59.050 42.857 1.02 0.00 40.41 3.73 R
3257 4868 0.248377 GTTCGGTACATCGTCCCTCG 60.248 60.000 0.00 0.00 41.41 4.63 R
3258 4869 1.065251 GAGTTCGGTACATCGTCCCTC 59.935 57.143 0.00 0.00 0.00 4.30 R
3259 4870 1.101331 GAGTTCGGTACATCGTCCCT 58.899 55.000 0.00 0.00 0.00 4.20 R
3260 4871 1.101331 AGAGTTCGGTACATCGTCCC 58.899 55.000 0.00 0.00 0.00 4.46 R
4882 6958 2.275318 GCAGAGAGCGCTCAACTTATT 58.725 47.619 36.87 16.49 43.81 1.40 R
5735 7815 5.105595 GCAAAAAGAATAGGAATCCAGCTGT 60.106 40.000 13.81 0.00 0.00 4.40 R
6219 8309 4.285003 TGGTAGGCAGTAAGCTAAAGAACA 59.715 41.667 0.00 0.00 44.79 3.18 R
7357 9450 1.588932 CGCCGCGTCACAGATATGT 60.589 57.895 4.92 0.00 0.00 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 1.305046 GTTCCTCCTCCCTCCGTCA 60.305 63.158 0.00 0.00 0.00 4.35
88 89 1.310933 CGTCCGCCACCACTAGTAGT 61.311 60.000 0.00 0.00 0.00 2.73
92 93 1.067212 CCGCCACCACTAGTAGTCATC 59.933 57.143 0.00 0.00 0.00 2.92
171 176 4.802051 GCAGATCCGGGCAAGGCA 62.802 66.667 0.00 0.00 0.00 4.75
243 260 2.687566 GGAGGATGTGGGGGACGT 60.688 66.667 0.00 0.00 0.00 4.34
266 283 1.812922 GACGTGGATCTGCAGGCAG 60.813 63.158 15.13 14.97 44.86 4.85
375 412 3.314635 ACGAAGATAACTAGGGTAGCACG 59.685 47.826 0.00 2.60 0.00 5.34
382 419 7.911651 AGATAACTAGGGTAGCACGTAGTATA 58.088 38.462 8.27 5.36 41.61 1.47
383 420 8.547173 AGATAACTAGGGTAGCACGTAGTATAT 58.453 37.037 8.27 8.39 41.61 0.86
384 421 9.823647 GATAACTAGGGTAGCACGTAGTATATA 57.176 37.037 8.27 1.08 41.61 0.86
388 425 9.606631 ACTAGGGTAGCACGTAGTATATAATAC 57.393 37.037 9.77 9.77 41.61 1.89
389 426 9.605275 CTAGGGTAGCACGTAGTATATAATACA 57.395 37.037 17.79 0.00 41.61 2.29
469 1408 6.425114 CGGATGTAGAGTATCAAATTTGAGGG 59.575 42.308 24.17 0.00 41.08 4.30
473 1412 6.884295 TGTAGAGTATCAAATTTGAGGGGTTG 59.116 38.462 24.17 0.00 41.08 3.77
485 1424 2.978010 GGGTTGCCGGTCACTGTG 60.978 66.667 1.90 0.17 0.00 3.66
486 1425 2.978010 GGTTGCCGGTCACTGTGG 60.978 66.667 8.11 0.00 0.00 4.17
487 1426 2.203153 GTTGCCGGTCACTGTGGT 60.203 61.111 8.11 0.00 0.00 4.16
498 1448 4.111016 CTGTGGTCGCGGCGTCTA 62.111 66.667 22.90 12.22 0.00 2.59
500 1450 4.112341 GTGGTCGCGGCGTCTACT 62.112 66.667 23.52 0.00 0.00 2.57
517 1467 1.254026 ACTGACGTTGGAGGAATCGA 58.746 50.000 0.00 0.00 0.00 3.59
530 1480 2.353257 GAATCGAATTTGCCGAGTCG 57.647 50.000 5.29 5.29 40.40 4.18
531 1481 1.659098 GAATCGAATTTGCCGAGTCGT 59.341 47.619 12.31 0.00 40.40 4.34
543 1498 3.250280 TGCCGAGTCGTAGATGATCTTAC 59.750 47.826 12.31 0.00 40.67 2.34
698 1654 0.753479 AGCAGAGTCCCATCGACGAT 60.753 55.000 4.05 4.05 46.92 3.73
1616 2911 5.905913 AGTATCAGGGGACTACTTGCTAATT 59.094 40.000 0.00 0.00 40.21 1.40
1654 2949 8.534496 ACTATTGACTTACCTAATAACACGGTT 58.466 33.333 0.00 0.00 32.36 4.44
1798 3093 8.134895 GTCATTCATTAGTTCAAGTTTTGGACA 58.865 33.333 3.29 0.00 41.80 4.02
2004 3546 8.653338 GGGTTACTTGTTCTTTTTGTTTTTCTC 58.347 33.333 0.00 0.00 0.00 2.87
2129 3671 1.537202 GAGCAAAGAAGTCATGCGGTT 59.463 47.619 0.00 0.00 44.60 4.44
2174 3716 3.764434 ACCTTCGAGCTCTTATTCTCACA 59.236 43.478 12.85 0.00 0.00 3.58
2268 3810 3.627577 CCTTTGCAAGCCTATCGTGTATT 59.372 43.478 0.00 0.00 0.00 1.89
2284 3826 7.905604 TCGTGTATTTCAGTCAAGATTTCAT 57.094 32.000 0.00 0.00 0.00 2.57
2365 3974 2.355197 CCGACAATATGGCACTTGACA 58.645 47.619 16.09 0.00 37.54 3.58
2367 3976 3.190327 CCGACAATATGGCACTTGACAAA 59.810 43.478 16.09 0.00 36.16 2.83
2368 3977 4.158384 CGACAATATGGCACTTGACAAAC 58.842 43.478 16.09 4.23 36.16 2.93
2369 3978 4.158384 GACAATATGGCACTTGACAAACG 58.842 43.478 16.09 0.00 36.16 3.60
2370 3979 3.818210 ACAATATGGCACTTGACAAACGA 59.182 39.130 16.09 0.00 36.16 3.85
2371 3980 4.458989 ACAATATGGCACTTGACAAACGAT 59.541 37.500 16.09 0.00 36.16 3.73
2372 3981 2.995466 ATGGCACTTGACAAACGATG 57.005 45.000 0.00 0.00 36.16 3.84
2373 3982 0.310543 TGGCACTTGACAAACGATGC 59.689 50.000 0.00 5.31 0.00 3.91
2374 3983 0.310543 GGCACTTGACAAACGATGCA 59.689 50.000 12.67 0.00 34.73 3.96
2375 3984 1.664016 GGCACTTGACAAACGATGCAG 60.664 52.381 12.67 0.00 34.73 4.41
2376 3985 1.678360 CACTTGACAAACGATGCAGC 58.322 50.000 0.00 0.00 0.00 5.25
2377 3986 1.265095 CACTTGACAAACGATGCAGCT 59.735 47.619 0.00 0.00 0.00 4.24
2378 3987 1.949525 ACTTGACAAACGATGCAGCTT 59.050 42.857 0.00 0.00 0.00 3.74
2379 3988 2.287188 ACTTGACAAACGATGCAGCTTG 60.287 45.455 0.00 0.88 0.00 4.01
2380 3989 1.592064 TGACAAACGATGCAGCTTGA 58.408 45.000 10.51 0.00 0.00 3.02
2381 3990 1.946081 TGACAAACGATGCAGCTTGAA 59.054 42.857 10.51 0.00 0.00 2.69
2382 3991 2.357323 TGACAAACGATGCAGCTTGAAA 59.643 40.909 10.51 0.00 0.00 2.69
2383 3992 3.181492 TGACAAACGATGCAGCTTGAAAA 60.181 39.130 10.51 0.00 0.00 2.29
2384 3993 3.115554 ACAAACGATGCAGCTTGAAAAC 58.884 40.909 10.51 0.00 0.00 2.43
2385 3994 3.181487 ACAAACGATGCAGCTTGAAAACT 60.181 39.130 10.51 0.00 0.00 2.66
2386 3995 2.693797 ACGATGCAGCTTGAAAACTG 57.306 45.000 0.00 0.00 36.96 3.16
2387 3996 1.949525 ACGATGCAGCTTGAAAACTGT 59.050 42.857 0.00 0.00 36.26 3.55
2388 3997 2.031682 ACGATGCAGCTTGAAAACTGTC 60.032 45.455 0.00 0.00 36.26 3.51
2389 3998 2.225019 CGATGCAGCTTGAAAACTGTCT 59.775 45.455 0.00 0.00 36.26 3.41
2390 3999 3.304257 CGATGCAGCTTGAAAACTGTCTT 60.304 43.478 0.00 0.00 36.26 3.01
2391 4000 3.425577 TGCAGCTTGAAAACTGTCTTG 57.574 42.857 0.00 0.00 36.26 3.02
2392 4001 2.122564 GCAGCTTGAAAACTGTCTTGC 58.877 47.619 0.00 0.00 36.26 4.01
2393 4002 2.223665 GCAGCTTGAAAACTGTCTTGCT 60.224 45.455 0.00 0.00 36.26 3.91
2394 4003 3.736126 GCAGCTTGAAAACTGTCTTGCTT 60.736 43.478 0.00 0.00 36.26 3.91
2395 4004 3.795101 CAGCTTGAAAACTGTCTTGCTTG 59.205 43.478 0.00 0.00 0.00 4.01
2396 4005 3.445096 AGCTTGAAAACTGTCTTGCTTGT 59.555 39.130 0.00 0.00 0.00 3.16
2397 4006 3.549070 GCTTGAAAACTGTCTTGCTTGTG 59.451 43.478 0.00 0.00 0.00 3.33
2398 4007 4.675146 GCTTGAAAACTGTCTTGCTTGTGA 60.675 41.667 0.00 0.00 0.00 3.58
2399 4008 5.384063 TTGAAAACTGTCTTGCTTGTGAA 57.616 34.783 0.00 0.00 0.00 3.18
2400 4009 4.732784 TGAAAACTGTCTTGCTTGTGAAC 58.267 39.130 0.00 0.00 0.00 3.18
2401 4010 4.458989 TGAAAACTGTCTTGCTTGTGAACT 59.541 37.500 0.00 0.00 0.00 3.01
2402 4011 5.048083 TGAAAACTGTCTTGCTTGTGAACTT 60.048 36.000 0.00 0.00 0.00 2.66
2403 4012 6.150307 TGAAAACTGTCTTGCTTGTGAACTTA 59.850 34.615 0.00 0.00 0.00 2.24
2404 4013 6.699575 AAACTGTCTTGCTTGTGAACTTAT 57.300 33.333 0.00 0.00 0.00 1.73
2405 4014 5.679734 ACTGTCTTGCTTGTGAACTTATG 57.320 39.130 0.00 0.00 0.00 1.90
2406 4015 5.368145 ACTGTCTTGCTTGTGAACTTATGA 58.632 37.500 0.00 0.00 0.00 2.15
2407 4016 6.000219 ACTGTCTTGCTTGTGAACTTATGAT 59.000 36.000 0.00 0.00 0.00 2.45
2408 4017 7.161404 ACTGTCTTGCTTGTGAACTTATGATA 58.839 34.615 0.00 0.00 0.00 2.15
2409 4018 7.118390 ACTGTCTTGCTTGTGAACTTATGATAC 59.882 37.037 0.00 0.00 0.00 2.24
2410 4019 7.161404 TGTCTTGCTTGTGAACTTATGATACT 58.839 34.615 0.00 0.00 0.00 2.12
2411 4020 7.661437 TGTCTTGCTTGTGAACTTATGATACTT 59.339 33.333 0.00 0.00 0.00 2.24
2412 4021 8.171840 GTCTTGCTTGTGAACTTATGATACTTC 58.828 37.037 0.00 0.00 0.00 3.01
2413 4022 7.877612 TCTTGCTTGTGAACTTATGATACTTCA 59.122 33.333 0.00 0.00 36.00 3.02
2414 4023 7.977789 TGCTTGTGAACTTATGATACTTCAA 57.022 32.000 0.00 0.00 34.96 2.69
2415 4024 8.032952 TGCTTGTGAACTTATGATACTTCAAG 57.967 34.615 0.00 0.00 34.96 3.02
2416 4025 6.963805 GCTTGTGAACTTATGATACTTCAAGC 59.036 38.462 0.00 0.00 43.90 4.01
2417 4026 7.977789 TTGTGAACTTATGATACTTCAAGCA 57.022 32.000 0.00 0.00 34.96 3.91
2418 4027 7.977789 TGTGAACTTATGATACTTCAAGCAA 57.022 32.000 0.00 0.00 34.96 3.91
2419 4028 8.565896 TGTGAACTTATGATACTTCAAGCAAT 57.434 30.769 0.00 0.00 34.96 3.56
2420 4029 9.665719 TGTGAACTTATGATACTTCAAGCAATA 57.334 29.630 0.00 0.00 34.96 1.90
2421 4030 9.922305 GTGAACTTATGATACTTCAAGCAATAC 57.078 33.333 0.00 0.00 34.96 1.89
2422 4031 9.665719 TGAACTTATGATACTTCAAGCAATACA 57.334 29.630 0.00 0.00 34.96 2.29
2425 4034 9.836864 ACTTATGATACTTCAAGCAATACATCA 57.163 29.630 0.00 0.00 34.96 3.07
2427 4036 9.836864 TTATGATACTTCAAGCAATACATCACT 57.163 29.630 0.00 0.00 34.96 3.41
2428 4037 8.743085 ATGATACTTCAAGCAATACATCACTT 57.257 30.769 0.00 0.00 34.96 3.16
2429 4038 7.977904 TGATACTTCAAGCAATACATCACTTG 58.022 34.615 0.00 0.00 40.66 3.16
2430 4039 5.051891 ACTTCAAGCAATACATCACTTGC 57.948 39.130 0.00 0.00 46.32 4.01
2618 4229 2.777459 AATGTACTCCCTCCGATCCT 57.223 50.000 0.00 0.00 0.00 3.24
2630 4241 5.605069 TCCCTCCGATCCTTATTAATTGTCA 59.395 40.000 0.00 0.00 0.00 3.58
3229 4840 8.912988 AGTTTCATGATTAAGGTTTCAAACAGA 58.087 29.630 1.93 0.00 0.00 3.41
3246 4857 6.988580 TCAAACAGATCTATCATGTAGCCTTG 59.011 38.462 0.00 0.00 0.00 3.61
3247 4858 6.491714 AACAGATCTATCATGTAGCCTTGT 57.508 37.500 0.00 0.00 0.00 3.16
3248 4859 7.603180 AACAGATCTATCATGTAGCCTTGTA 57.397 36.000 0.00 0.00 0.00 2.41
3249 4860 7.603180 ACAGATCTATCATGTAGCCTTGTAA 57.397 36.000 0.00 0.00 0.00 2.41
3250 4861 7.437748 ACAGATCTATCATGTAGCCTTGTAAC 58.562 38.462 0.00 0.00 0.00 2.50
3251 4862 6.870965 CAGATCTATCATGTAGCCTTGTAACC 59.129 42.308 0.00 0.00 0.00 2.85
3252 4863 5.546621 TCTATCATGTAGCCTTGTAACCC 57.453 43.478 0.00 0.00 0.00 4.11
3253 4864 3.577805 ATCATGTAGCCTTGTAACCCC 57.422 47.619 0.00 0.00 0.00 4.95
3254 4865 1.562475 TCATGTAGCCTTGTAACCCCC 59.438 52.381 0.00 0.00 0.00 5.40
3310 5055 9.861138 CTTTTCAATGAAATGAAACGCAAAATA 57.139 25.926 14.18 0.00 46.06 1.40
3311 5056 9.643652 TTTTCAATGAAATGAAACGCAAAATAC 57.356 25.926 9.41 0.00 46.06 1.89
3327 5072 6.726035 CAAAATACTTTTGCGTTTTCTCGA 57.274 33.333 0.00 0.00 42.91 4.04
3393 5138 4.232221 CTGGTGTTTCAAGTCATGCATTC 58.768 43.478 0.00 0.00 0.00 2.67
3407 5152 2.449464 TGCATTCTTTGTGCCATAGCT 58.551 42.857 0.00 0.00 41.83 3.32
3513 5259 7.907389 ACAAACTCATGTCTAGTCCTTATTCA 58.093 34.615 0.00 0.00 0.00 2.57
3971 5717 1.133790 GTCAAAGGCTGTGATGATGCC 59.866 52.381 11.24 0.00 46.42 4.40
4094 5840 7.879070 TCTGCAAGATATATTTTCAATCTGCC 58.121 34.615 0.00 0.00 38.67 4.85
4124 5870 6.101150 ACTTTGCTGTATGGGATATACCAGAA 59.899 38.462 13.42 0.00 45.20 3.02
4281 6029 7.492344 GGTACAATTTGCCTGGAAGAATAATTG 59.508 37.037 0.00 2.87 38.86 2.32
4414 6474 3.971702 GGGGAAGCTGGTGTGCCT 61.972 66.667 0.00 0.00 35.27 4.75
4882 6958 3.614092 CTTAGCTCCAGCATTTCCTTCA 58.386 45.455 0.48 0.00 45.16 3.02
4887 6963 4.643784 AGCTCCAGCATTTCCTTCAATAAG 59.356 41.667 0.48 0.00 45.16 1.73
4973 7049 3.891366 CCTCCTCAACAGACAAATTGGTT 59.109 43.478 0.00 0.00 0.00 3.67
5027 7103 8.330466 TGATGTACCTTCGTAATGACAATTTT 57.670 30.769 0.00 0.00 0.00 1.82
5320 7397 4.910195 ACATTCTTGATCCAGCACTTACA 58.090 39.130 0.00 0.00 0.00 2.41
5777 7857 5.378292 TTTGCTGCGTCACCATTTTATTA 57.622 34.783 0.00 0.00 0.00 0.98
5778 7858 5.378292 TTGCTGCGTCACCATTTTATTAA 57.622 34.783 0.00 0.00 0.00 1.40
5779 7859 4.980590 TGCTGCGTCACCATTTTATTAAG 58.019 39.130 0.00 0.00 0.00 1.85
5780 7860 4.457603 TGCTGCGTCACCATTTTATTAAGT 59.542 37.500 0.00 0.00 0.00 2.24
5781 7861 5.028375 GCTGCGTCACCATTTTATTAAGTC 58.972 41.667 0.00 0.00 0.00 3.01
5782 7862 5.554822 TGCGTCACCATTTTATTAAGTCC 57.445 39.130 0.00 0.00 0.00 3.85
5783 7863 5.250200 TGCGTCACCATTTTATTAAGTCCT 58.750 37.500 0.00 0.00 0.00 3.85
5784 7864 6.408035 TGCGTCACCATTTTATTAAGTCCTA 58.592 36.000 0.00 0.00 0.00 2.94
5920 8008 3.408288 GTGAGACTCATACCGACTCAC 57.592 52.381 8.73 0.00 46.16 3.51
6128 8217 9.448438 AAGTTGTTTTTCCTTTTTCTTAAGCAT 57.552 25.926 0.00 0.00 0.00 3.79
6173 8262 9.211485 AGCATCCATGTCTTTGAAAATTTTAAG 57.789 29.630 2.75 5.33 0.00 1.85
6501 8591 0.460987 ATACTGCAACAGAGCTCGCC 60.461 55.000 8.37 0.00 35.18 5.54
6754 8846 3.551046 CCAGTATAAGCTAGCGACCTGTG 60.551 52.174 9.55 4.72 0.00 3.66
6759 8851 1.374758 GCTAGCGACCTGTGTGCTT 60.375 57.895 0.00 0.00 40.06 3.91
6805 8897 1.544093 CCGAGCTATTGGCCACATCAT 60.544 52.381 3.88 0.00 43.05 2.45
6959 9051 2.622942 GGTTTGCTTCTCAACCATGACA 59.377 45.455 0.00 0.00 33.73 3.58
6976 9068 4.782019 TGACACCTTTTGCCAACATATC 57.218 40.909 0.00 0.00 0.00 1.63
7357 9450 4.701171 TGTTGCATGATTGTGAGCTATTGA 59.299 37.500 0.00 0.00 0.00 2.57
7371 9464 4.302455 AGCTATTGACATATCTGTGACGC 58.698 43.478 0.00 0.00 35.14 5.19
7435 9528 2.001159 CTGAGCTGAGAAGTGCATCAC 58.999 52.381 0.00 0.00 34.10 3.06
7436 9529 0.997932 GAGCTGAGAAGTGCATCACG 59.002 55.000 0.00 0.00 39.64 4.35
7539 9632 4.234574 CCTCGCCATTGTTTAAAGGAAAC 58.765 43.478 0.00 0.00 46.57 2.78
7543 9636 3.985279 GCCATTGTTTAAAGGAAACCGTC 59.015 43.478 0.00 0.00 45.94 4.79
7642 9736 8.305441 TGTTTTGGTTTTCTTTTCAGAAACTC 57.695 30.769 0.00 0.00 46.71 3.01
7705 9799 5.718801 TTACCCCAAGGCAGTTTCATATA 57.281 39.130 0.00 0.00 36.11 0.86
7735 9829 6.039616 GTGTTGTAAAAGGATGTGAGCAAAA 58.960 36.000 0.00 0.00 0.00 2.44
7780 9875 1.078143 GGGGTGCAGGCTTCAGTAG 60.078 63.158 0.00 0.00 0.00 2.57
7831 9926 2.433446 CCCTGCCTGCTGTGAGTT 59.567 61.111 0.00 0.00 0.00 3.01
7864 9959 2.507058 TGTATTCAGCCAGGAAGCATCT 59.493 45.455 0.00 0.00 34.23 2.90
7894 9989 5.298276 TGGCGAAAAGATTGTAGTGAAGTTT 59.702 36.000 0.00 0.00 0.00 2.66
7897 9992 6.910433 GCGAAAAGATTGTAGTGAAGTTTTCA 59.090 34.615 0.00 0.00 33.85 2.69
8032 11276 8.579682 TTATTTTCTTTGCTGCTCTTCTTTTC 57.420 30.769 0.00 0.00 0.00 2.29
8079 11323 1.984026 CCCCCACCTCCATTGCAAC 60.984 63.158 0.00 0.00 0.00 4.17
8094 11346 7.495901 TCCATTGCAACAAACAAAATAAGAGA 58.504 30.769 0.00 0.00 0.00 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.987368 GGGTAGGGTTTTGGTGTAGGA 59.013 52.381 0.00 0.00 0.00 2.94
3 4 1.987368 GAGGGGTAGGGTTTTGGTGTA 59.013 52.381 0.00 0.00 0.00 2.90
47 48 1.376609 GAGTGGAAAATGGCGGCGAT 61.377 55.000 12.98 0.00 0.00 4.58
104 105 1.500474 AGAAATGGCTCCTCATCCGA 58.500 50.000 0.00 0.00 0.00 4.55
243 260 0.247460 CTGCAGATCCACGTCTCCAA 59.753 55.000 8.42 0.00 0.00 3.53
266 283 1.676967 CCCTCCTTGCCTGTTGCTC 60.677 63.158 0.00 0.00 42.00 4.26
332 349 0.108804 GATGTCCATGACGTCGGTGT 60.109 55.000 11.62 0.00 38.54 4.16
387 424 9.723601 ACAAAACATGCAAAATAAATCCTATGT 57.276 25.926 0.00 0.00 0.00 2.29
391 428 9.165035 CCATACAAAACATGCAAAATAAATCCT 57.835 29.630 0.00 0.00 0.00 3.24
392 429 9.160496 TCCATACAAAACATGCAAAATAAATCC 57.840 29.630 0.00 0.00 0.00 3.01
438 475 9.449719 AAATTTGATACTCTACATCCGAGTTTT 57.550 29.630 0.00 0.00 41.62 2.43
441 478 7.782049 TCAAATTTGATACTCTACATCCGAGT 58.218 34.615 16.91 0.00 37.60 4.18
457 1396 0.965439 CGGCAACCCCTCAAATTTGA 59.035 50.000 19.45 19.45 35.57 2.69
469 1408 2.978010 CCACAGTGACCGGCAACC 60.978 66.667 0.00 0.00 0.00 3.77
485 1424 3.807538 TCAGTAGACGCCGCGACC 61.808 66.667 21.79 10.70 0.00 4.79
486 1425 2.576317 GTCAGTAGACGCCGCGAC 60.576 66.667 21.79 14.16 34.60 5.19
498 1448 1.254026 TCGATTCCTCCAACGTCAGT 58.746 50.000 0.00 0.00 0.00 3.41
500 1450 3.328382 AATTCGATTCCTCCAACGTCA 57.672 42.857 0.00 0.00 0.00 4.35
507 1457 1.599542 CTCGGCAAATTCGATTCCTCC 59.400 52.381 0.00 0.00 36.01 4.30
512 1462 1.722011 ACGACTCGGCAAATTCGATT 58.278 45.000 2.98 0.00 36.01 3.34
517 1467 3.520290 TCATCTACGACTCGGCAAATT 57.480 42.857 2.98 0.00 0.00 1.82
670 1626 2.191641 GACTCTGCTCCATGGCCC 59.808 66.667 6.96 0.10 0.00 5.80
698 1654 2.223735 CGGCTCAGCTTAAAGGACGATA 60.224 50.000 0.00 0.00 0.00 2.92
1331 2626 1.133915 AGTCGAAAAACCTCTTGGCCA 60.134 47.619 0.00 0.00 36.63 5.36
1408 2703 0.390998 TCATCGATCAACCGCTGCAA 60.391 50.000 0.00 0.00 0.00 4.08
1416 2711 1.798368 CGTCGGCGTCATCGATCAAC 61.798 60.000 6.85 0.00 38.93 3.18
1511 2806 6.662616 ACTCGTCAGAAAACATCAAAGAATG 58.337 36.000 0.00 0.00 0.00 2.67
1604 2899 4.999950 CCAGCCCTATGAATTAGCAAGTAG 59.000 45.833 0.00 0.00 0.00 2.57
1616 2911 3.928754 AGTCAATAGTCCAGCCCTATGA 58.071 45.455 0.00 0.00 0.00 2.15
1654 2949 7.329962 TCGATATCTTCTTAAAACTTCGTTGCA 59.670 33.333 0.34 0.00 0.00 4.08
2284 3826 5.520288 GCTGCATCGACTGACTAAGAAAATA 59.480 40.000 0.00 0.00 0.00 1.40
2291 3833 2.231235 TCAAGCTGCATCGACTGACTAA 59.769 45.455 1.02 0.00 0.00 2.24
2364 3973 3.180980 CAGTTTTCAAGCTGCATCGTTTG 59.819 43.478 1.02 0.00 30.59 2.93
2365 3974 3.181487 ACAGTTTTCAAGCTGCATCGTTT 60.181 39.130 1.02 0.00 40.41 3.60
2367 3976 1.949525 ACAGTTTTCAAGCTGCATCGT 59.050 42.857 1.02 0.00 40.41 3.73
2368 3977 2.225019 AGACAGTTTTCAAGCTGCATCG 59.775 45.455 1.02 0.00 40.41 3.84
2369 3978 3.911661 AGACAGTTTTCAAGCTGCATC 57.088 42.857 1.02 0.00 40.41 3.91
2370 3979 3.797865 GCAAGACAGTTTTCAAGCTGCAT 60.798 43.478 1.02 0.00 40.41 3.96
2371 3980 2.480073 GCAAGACAGTTTTCAAGCTGCA 60.480 45.455 1.02 0.00 40.41 4.41
2372 3981 2.122564 GCAAGACAGTTTTCAAGCTGC 58.877 47.619 3.51 0.00 40.41 5.25
2373 3982 3.705043 AGCAAGACAGTTTTCAAGCTG 57.295 42.857 2.13 2.13 42.17 4.24
2374 3983 3.445096 ACAAGCAAGACAGTTTTCAAGCT 59.555 39.130 0.00 0.00 31.52 3.74
2375 3984 3.549070 CACAAGCAAGACAGTTTTCAAGC 59.451 43.478 0.00 0.00 0.00 4.01
2376 3985 4.985413 TCACAAGCAAGACAGTTTTCAAG 58.015 39.130 0.00 0.00 0.00 3.02
2377 3986 5.048083 AGTTCACAAGCAAGACAGTTTTCAA 60.048 36.000 0.00 0.00 0.00 2.69
2378 3987 4.458989 AGTTCACAAGCAAGACAGTTTTCA 59.541 37.500 0.00 0.00 0.00 2.69
2379 3988 4.986622 AGTTCACAAGCAAGACAGTTTTC 58.013 39.130 0.00 0.00 0.00 2.29
2380 3989 5.391312 AAGTTCACAAGCAAGACAGTTTT 57.609 34.783 0.00 0.00 0.00 2.43
2381 3990 6.318648 TCATAAGTTCACAAGCAAGACAGTTT 59.681 34.615 0.00 0.00 0.00 2.66
2382 3991 5.822519 TCATAAGTTCACAAGCAAGACAGTT 59.177 36.000 0.00 0.00 0.00 3.16
2383 3992 5.368145 TCATAAGTTCACAAGCAAGACAGT 58.632 37.500 0.00 0.00 0.00 3.55
2384 3993 5.929697 TCATAAGTTCACAAGCAAGACAG 57.070 39.130 0.00 0.00 0.00 3.51
2385 3994 7.161404 AGTATCATAAGTTCACAAGCAAGACA 58.839 34.615 0.00 0.00 0.00 3.41
2386 3995 7.602517 AGTATCATAAGTTCACAAGCAAGAC 57.397 36.000 0.00 0.00 0.00 3.01
2387 3996 7.877612 TGAAGTATCATAAGTTCACAAGCAAGA 59.122 33.333 0.00 0.00 34.61 3.02
2388 3997 8.032952 TGAAGTATCATAAGTTCACAAGCAAG 57.967 34.615 0.00 0.00 34.61 4.01
2389 3998 7.977789 TGAAGTATCATAAGTTCACAAGCAA 57.022 32.000 0.00 0.00 34.61 3.91
2390 3999 7.361201 GCTTGAAGTATCATAAGTTCACAAGCA 60.361 37.037 5.97 0.00 39.87 3.91
2391 4000 6.963805 GCTTGAAGTATCATAAGTTCACAAGC 59.036 38.462 0.00 0.00 38.28 4.01
2392 4001 8.032952 TGCTTGAAGTATCATAAGTTCACAAG 57.967 34.615 0.00 0.00 38.28 3.16
2393 4002 7.977789 TGCTTGAAGTATCATAAGTTCACAA 57.022 32.000 0.00 0.00 38.28 3.33
2394 4003 7.977789 TTGCTTGAAGTATCATAAGTTCACA 57.022 32.000 0.00 0.00 38.28 3.58
2395 4004 9.922305 GTATTGCTTGAAGTATCATAAGTTCAC 57.078 33.333 0.00 0.00 38.28 3.18
2396 4005 9.665719 TGTATTGCTTGAAGTATCATAAGTTCA 57.334 29.630 0.00 0.00 37.10 3.18
2399 4008 9.836864 TGATGTATTGCTTGAAGTATCATAAGT 57.163 29.630 0.00 0.00 34.96 2.24
2401 4010 9.836864 AGTGATGTATTGCTTGAAGTATCATAA 57.163 29.630 0.00 0.00 34.96 1.90
2402 4011 9.836864 AAGTGATGTATTGCTTGAAGTATCATA 57.163 29.630 0.00 0.00 34.96 2.15
2403 4012 8.618677 CAAGTGATGTATTGCTTGAAGTATCAT 58.381 33.333 0.00 0.00 40.30 2.45
2404 4013 7.414429 GCAAGTGATGTATTGCTTGAAGTATCA 60.414 37.037 7.24 0.00 46.49 2.15
2405 4014 6.909357 GCAAGTGATGTATTGCTTGAAGTATC 59.091 38.462 7.24 0.00 46.49 2.24
2406 4015 6.789262 GCAAGTGATGTATTGCTTGAAGTAT 58.211 36.000 7.24 0.00 46.49 2.12
2407 4016 6.182039 GCAAGTGATGTATTGCTTGAAGTA 57.818 37.500 7.24 0.00 46.49 2.24
2408 4017 5.051891 GCAAGTGATGTATTGCTTGAAGT 57.948 39.130 7.24 0.00 46.49 3.01
2416 4025 7.087409 TGGAATTACAGCAAGTGATGTATTG 57.913 36.000 9.99 0.00 44.94 1.90
2417 4026 7.886629 ATGGAATTACAGCAAGTGATGTATT 57.113 32.000 9.99 4.56 44.94 1.89
2418 4027 7.886629 AATGGAATTACAGCAAGTGATGTAT 57.113 32.000 9.99 0.00 44.94 2.29
2419 4028 8.839343 CATAATGGAATTACAGCAAGTGATGTA 58.161 33.333 5.34 5.34 42.43 2.29
2420 4029 7.340232 ACATAATGGAATTACAGCAAGTGATGT 59.660 33.333 7.43 7.43 42.43 3.06
2421 4030 7.709947 ACATAATGGAATTACAGCAAGTGATG 58.290 34.615 0.00 0.00 42.43 3.07
2422 4031 7.013655 GGACATAATGGAATTACAGCAAGTGAT 59.986 37.037 0.00 0.00 42.43 3.06
2423 4032 6.318648 GGACATAATGGAATTACAGCAAGTGA 59.681 38.462 0.00 0.00 42.43 3.41
2424 4033 6.319658 AGGACATAATGGAATTACAGCAAGTG 59.680 38.462 0.00 0.00 42.43 3.16
2425 4034 6.319658 CAGGACATAATGGAATTACAGCAAGT 59.680 38.462 0.00 0.00 42.43 3.16
2426 4035 6.238842 CCAGGACATAATGGAATTACAGCAAG 60.239 42.308 0.00 0.00 42.43 4.01
2427 4036 5.593909 CCAGGACATAATGGAATTACAGCAA 59.406 40.000 0.00 0.00 42.43 3.91
2428 4037 5.132502 CCAGGACATAATGGAATTACAGCA 58.867 41.667 0.00 0.00 42.43 4.41
2429 4038 5.009010 CACCAGGACATAATGGAATTACAGC 59.991 44.000 0.00 0.00 42.43 4.40
2430 4039 5.009010 GCACCAGGACATAATGGAATTACAG 59.991 44.000 0.00 0.00 42.43 2.74
2431 4040 4.887071 GCACCAGGACATAATGGAATTACA 59.113 41.667 0.00 0.00 42.43 2.41
2432 4041 5.009010 CAGCACCAGGACATAATGGAATTAC 59.991 44.000 0.00 0.00 42.43 1.89
2433 4042 5.104151 TCAGCACCAGGACATAATGGAATTA 60.104 40.000 0.00 0.00 44.01 1.40
2630 4241 8.377799 AGGAGGAAAATTTATGCAAAAATCAGT 58.622 29.630 0.00 0.00 0.00 3.41
2844 4455 1.093159 GCATGCTCTGAAGGTTGAGG 58.907 55.000 11.37 0.00 0.00 3.86
3229 4840 5.013183 GGGGTTACAAGGCTACATGATAGAT 59.987 44.000 0.00 0.00 0.00 1.98
3254 4865 1.436336 GGTACATCGTCCCTCGTGG 59.564 63.158 0.00 0.00 40.80 4.94
3255 4866 1.063649 CGGTACATCGTCCCTCGTG 59.936 63.158 0.00 0.00 40.80 4.35
3256 4867 0.677731 TTCGGTACATCGTCCCTCGT 60.678 55.000 0.00 0.00 40.80 4.18
3257 4868 0.248377 GTTCGGTACATCGTCCCTCG 60.248 60.000 0.00 0.00 41.41 4.63
3258 4869 1.065251 GAGTTCGGTACATCGTCCCTC 59.935 57.143 0.00 0.00 0.00 4.30
3259 4870 1.101331 GAGTTCGGTACATCGTCCCT 58.899 55.000 0.00 0.00 0.00 4.20
3260 4871 1.101331 AGAGTTCGGTACATCGTCCC 58.899 55.000 0.00 0.00 0.00 4.46
3261 4872 2.422832 AGAAGAGTTCGGTACATCGTCC 59.577 50.000 0.00 0.00 34.02 4.79
3262 4873 3.487209 GGAGAAGAGTTCGGTACATCGTC 60.487 52.174 0.00 0.00 34.02 4.20
3263 4874 2.422832 GGAGAAGAGTTCGGTACATCGT 59.577 50.000 0.00 0.00 34.02 3.73
3264 4875 2.683867 AGGAGAAGAGTTCGGTACATCG 59.316 50.000 0.00 0.00 34.02 3.84
3265 4876 4.722361 AAGGAGAAGAGTTCGGTACATC 57.278 45.455 0.00 0.00 34.02 3.06
3266 4877 5.011738 TGAAAAGGAGAAGAGTTCGGTACAT 59.988 40.000 0.00 0.00 34.02 2.29
3267 4878 4.342951 TGAAAAGGAGAAGAGTTCGGTACA 59.657 41.667 0.00 0.00 34.02 2.90
3268 4879 4.879598 TGAAAAGGAGAAGAGTTCGGTAC 58.120 43.478 0.00 0.00 34.02 3.34
3269 4880 5.540400 TTGAAAAGGAGAAGAGTTCGGTA 57.460 39.130 0.00 0.00 34.02 4.02
3270 4881 4.417426 TTGAAAAGGAGAAGAGTTCGGT 57.583 40.909 0.00 0.00 34.02 4.69
3271 4882 4.997395 TCATTGAAAAGGAGAAGAGTTCGG 59.003 41.667 0.00 0.00 28.02 4.30
3356 5101 1.846439 CACCAGGAACAGGGGTATCAT 59.154 52.381 0.00 0.00 40.36 2.45
3407 5152 4.157656 GCAACTATTGGCATAACAACTCCA 59.842 41.667 0.00 0.00 32.39 3.86
3513 5259 6.976934 AACTAATCCAAACAGTTGTCCATT 57.023 33.333 0.00 0.00 31.47 3.16
3741 5487 2.747177 TCATATCACACCTTCTCGGGT 58.253 47.619 0.00 0.00 40.73 5.28
3839 5585 2.969821 TTGTACCCAGCAAATGAGGT 57.030 45.000 0.00 0.00 36.68 3.85
3971 5717 4.884164 ACAACCTCCTCAAGTTCTTTCTTG 59.116 41.667 0.00 0.00 44.08 3.02
4080 5826 7.035004 GCAAAGTACATGGCAGATTGAAAATA 58.965 34.615 0.00 0.00 0.00 1.40
4094 5840 7.334421 GGTATATCCCATACAGCAAAGTACATG 59.666 40.741 0.00 0.00 0.00 3.21
4281 6029 7.009265 GGTTTTGAAAGCTAAACAGAGAAACAC 59.991 37.037 11.02 1.87 40.13 3.32
4347 6407 5.634020 GCTCTAGTAAGGTATGCATTTACCG 59.366 44.000 3.54 2.84 45.30 4.02
4495 6555 3.679389 AGCACTCTAAGGTCACCAAATG 58.321 45.455 0.00 0.00 0.00 2.32
4704 6777 4.227197 AGTGGGATAGGGATACAACTGAG 58.773 47.826 0.00 0.00 39.74 3.35
4882 6958 2.275318 GCAGAGAGCGCTCAACTTATT 58.725 47.619 36.87 16.49 43.81 1.40
5027 7103 6.451393 ACAGTAAAAAGTTGCTCACACAAAA 58.549 32.000 0.00 0.00 0.00 2.44
5038 7115 9.083080 CCTGTAAAAAGGAACAGTAAAAAGTTG 57.917 33.333 2.19 0.00 41.25 3.16
5320 7397 7.126421 ACATGTCTATCAAATCTACCAGGTCTT 59.874 37.037 0.00 0.00 0.00 3.01
5735 7815 5.105595 GCAAAAAGAATAGGAATCCAGCTGT 60.106 40.000 13.81 0.00 0.00 4.40
5784 7864 8.466798 GCCATGGATTTATAAGTGTTACAAGTT 58.533 33.333 18.40 0.00 0.00 2.66
5920 8008 7.348080 AGGTCTAACAGAAAAAGGAAAAAGG 57.652 36.000 0.00 0.00 0.00 3.11
6128 8217 5.462530 TGCTACAACTACTAGTTCAAGCA 57.537 39.130 20.92 20.92 44.26 3.91
6173 8262 5.030936 GCAGAAATTTACATCTTCTTCGGC 58.969 41.667 0.00 0.00 0.00 5.54
6219 8309 4.285003 TGGTAGGCAGTAAGCTAAAGAACA 59.715 41.667 0.00 0.00 44.79 3.18
6754 8846 6.075205 CGATAGATTATGCAAAAGCAAAGCAC 60.075 38.462 0.00 0.00 38.99 4.40
6759 8851 7.744087 ATACCGATAGATTATGCAAAAGCAA 57.256 32.000 0.00 0.00 39.76 3.91
6805 8897 5.888982 AAGTGGAGTTTAAGAGAGGTTCA 57.111 39.130 0.00 0.00 0.00 3.18
7357 9450 1.588932 CGCCGCGTCACAGATATGT 60.589 57.895 4.92 0.00 0.00 2.29
7435 9528 2.872858 GCTTCCCTATCTAAACCAAGCG 59.127 50.000 0.00 0.00 0.00 4.68
7436 9529 3.886123 TGCTTCCCTATCTAAACCAAGC 58.114 45.455 0.00 0.00 36.21 4.01
7539 9632 6.090483 AGAATGAGACAGTTATATGGACGG 57.910 41.667 0.00 0.00 0.00 4.79
7543 9636 7.600375 ACGCAATAGAATGAGACAGTTATATGG 59.400 37.037 0.00 0.00 0.00 2.74
7583 9676 5.470098 AGACATAATAATTGACCACATCCGC 59.530 40.000 0.00 0.00 0.00 5.54
7642 9736 4.041049 TGTAATTGCAGTTTTGAACAGCG 58.959 39.130 0.00 0.00 45.66 5.18
7663 9757 8.347771 GGGGTAAAAACTAAAAAGACAGTACTG 58.652 37.037 21.44 21.44 0.00 2.74
7664 9758 8.054572 TGGGGTAAAAACTAAAAAGACAGTACT 58.945 33.333 0.00 0.00 0.00 2.73
7705 9799 7.362920 GCTCACATCCTTTTACAACACCAATAT 60.363 37.037 0.00 0.00 0.00 1.28
7735 9829 1.896220 TTGCCGAATCACAGAGCTTT 58.104 45.000 0.00 0.00 0.00 3.51
7812 9907 2.359602 CTCACAGCAGGCAGGGTG 60.360 66.667 6.80 6.80 41.84 4.61
7831 9926 4.021807 TGGCTGAATACAAACGACTAGTCA 60.022 41.667 22.37 2.19 0.00 3.41
7864 9959 5.637810 CACTACAATCTTTTCGCCACTCTTA 59.362 40.000 0.00 0.00 0.00 2.10
8054 11298 1.624173 ATGGAGGTGGGGGAATTGAT 58.376 50.000 0.00 0.00 0.00 2.57
8055 11299 1.006998 CAATGGAGGTGGGGGAATTGA 59.993 52.381 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.