Multiple sequence alignment - TraesCS3B01G252800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G252800 chr3B 100.000 4611 0 0 1 4611 405944847 405949457 0.000000e+00 8516.0
1 TraesCS3B01G252800 chr3D 94.473 3094 80 14 717 3753 313631108 313628049 0.000000e+00 4682.0
2 TraesCS3B01G252800 chr3D 91.388 418 21 5 3754 4165 313628004 313627596 4.030000e-155 558.0
3 TraesCS3B01G252800 chr3D 87.910 488 32 8 4150 4611 313612065 313611579 2.430000e-152 549.0
4 TraesCS3B01G252800 chr3D 84.091 132 17 2 4452 4579 441388798 441388667 1.740000e-24 124.0
5 TraesCS3B01G252800 chr3A 93.935 3100 97 20 717 3753 416142363 416139292 0.000000e+00 4599.0
6 TraesCS3B01G252800 chr3A 90.463 367 25 4 3754 4120 416139204 416138848 4.170000e-130 475.0
7 TraesCS3B01G252800 chr3A 83.333 132 18 2 4452 4579 582283346 582283215 8.100000e-23 119.0
8 TraesCS3B01G252800 chr3A 92.453 53 3 1 4403 4454 733117584 733117532 1.780000e-09 75.0
9 TraesCS3B01G252800 chr6A 93.103 725 43 6 1 722 65560150 65559430 0.000000e+00 1055.0
10 TraesCS3B01G252800 chr6A 83.281 317 43 10 4147 4456 27771172 27770859 2.720000e-72 283.0
11 TraesCS3B01G252800 chr6A 88.182 110 12 1 4344 4453 459074192 459074300 3.740000e-26 130.0
12 TraesCS3B01G252800 chr4A 90.730 712 54 9 1 705 659137766 659137060 0.000000e+00 939.0
13 TraesCS3B01G252800 chr4A 83.810 315 41 9 4150 4455 547297341 547297028 1.620000e-74 291.0
14 TraesCS3B01G252800 chr4A 84.091 132 14 5 4453 4579 703265879 703266008 2.250000e-23 121.0
15 TraesCS3B01G252800 chr2D 90.436 711 57 10 1 705 575964540 575965245 0.000000e+00 926.0
16 TraesCS3B01G252800 chr2D 82.707 133 19 3 4452 4580 79056298 79056166 1.050000e-21 115.0
17 TraesCS3B01G252800 chr2A 89.216 714 61 14 1 705 43663925 43663219 0.000000e+00 878.0
18 TraesCS3B01G252800 chr5A 89.076 714 61 14 1 705 345756871 345757576 0.000000e+00 870.0
19 TraesCS3B01G252800 chr5A 88.640 713 66 12 1 705 392130508 392131213 0.000000e+00 854.0
20 TraesCS3B01G252800 chr2B 88.967 707 64 12 1 700 563666167 563666866 0.000000e+00 861.0
21 TraesCS3B01G252800 chr2B 83.333 132 18 3 4452 4579 545259311 545259442 8.100000e-23 119.0
22 TraesCS3B01G252800 chr1B 88.796 714 64 14 1 705 623243391 623242685 0.000000e+00 861.0
23 TraesCS3B01G252800 chr1B 92.126 254 19 1 1000 1253 548682290 548682038 1.580000e-94 357.0
24 TraesCS3B01G252800 chr5B 88.687 716 65 14 1 705 470058693 470059403 0.000000e+00 859.0
25 TraesCS3B01G252800 chr5B 79.577 142 21 8 4323 4460 534012236 534012099 1.370000e-15 95.3
26 TraesCS3B01G252800 chr6B 83.934 305 39 9 4157 4452 487136050 487136353 2.720000e-72 283.0
27 TraesCS3B01G252800 chr6B 83.212 137 19 3 4452 4584 537553972 537553836 6.270000e-24 122.0
28 TraesCS3B01G252800 chr6D 83.007 306 44 7 4157 4455 472496015 472495711 2.110000e-68 270.0
29 TraesCS3B01G252800 chr7D 84.211 133 16 3 4452 4579 454079209 454079077 1.740000e-24 124.0
30 TraesCS3B01G252800 chr4B 83.459 133 16 5 4452 4579 146469347 146469216 8.100000e-23 119.0
31 TraesCS3B01G252800 chr4B 83.333 132 18 3 4452 4579 438375312 438375181 8.100000e-23 119.0
32 TraesCS3B01G252800 chr4D 89.362 47 4 1 4380 4425 506730801 506730847 1.790000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G252800 chr3B 405944847 405949457 4610 False 8516 8516 100.0000 1 4611 1 chr3B.!!$F1 4610
1 TraesCS3B01G252800 chr3D 313627596 313631108 3512 True 2620 4682 92.9305 717 4165 2 chr3D.!!$R3 3448
2 TraesCS3B01G252800 chr3A 416138848 416142363 3515 True 2537 4599 92.1990 717 4120 2 chr3A.!!$R3 3403
3 TraesCS3B01G252800 chr6A 65559430 65560150 720 True 1055 1055 93.1030 1 722 1 chr6A.!!$R2 721
4 TraesCS3B01G252800 chr4A 659137060 659137766 706 True 939 939 90.7300 1 705 1 chr4A.!!$R2 704
5 TraesCS3B01G252800 chr2D 575964540 575965245 705 False 926 926 90.4360 1 705 1 chr2D.!!$F1 704
6 TraesCS3B01G252800 chr2A 43663219 43663925 706 True 878 878 89.2160 1 705 1 chr2A.!!$R1 704
7 TraesCS3B01G252800 chr5A 345756871 345757576 705 False 870 870 89.0760 1 705 1 chr5A.!!$F1 704
8 TraesCS3B01G252800 chr5A 392130508 392131213 705 False 854 854 88.6400 1 705 1 chr5A.!!$F2 704
9 TraesCS3B01G252800 chr2B 563666167 563666866 699 False 861 861 88.9670 1 700 1 chr2B.!!$F2 699
10 TraesCS3B01G252800 chr1B 623242685 623243391 706 True 861 861 88.7960 1 705 1 chr1B.!!$R2 704
11 TraesCS3B01G252800 chr5B 470058693 470059403 710 False 859 859 88.6870 1 705 1 chr5B.!!$F1 704

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
964 1026 3.121030 CTTTGCCTAGCAGCGCGT 61.121 61.111 8.43 0.00 40.61 6.01 F
1915 2018 0.103208 GATCTGTCCAGCCACGTAGG 59.897 60.000 0.00 0.00 41.84 3.18 F
2521 2636 0.038526 AAGACCGGCTGTACAACTCG 60.039 55.000 0.00 1.16 0.00 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2147 2250 0.374758 CATGGATCGTTGACCGCAAG 59.625 55.000 0.00 0.0 34.01 4.01 R
2809 2924 0.389166 GATCCACGATCTCCGGCATC 60.389 60.000 0.00 0.0 43.93 3.91 R
4430 4643 1.561542 GGGCCTCTTTGATTCTCAGGA 59.438 52.381 0.84 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 37 9.507329 AATGAGACAATATAAACACAAGTGTCT 57.493 29.630 6.28 4.54 45.08 3.41
122 129 5.466728 GCATATTAGATCGCACTCTTTTCCA 59.533 40.000 0.00 0.00 0.00 3.53
364 378 7.989170 GCATCATTTTCTCCTTATTTTTCCCAT 59.011 33.333 0.00 0.00 0.00 4.00
382 397 4.836175 TCCCATTGGGTTTAAAGGAGTTTC 59.164 41.667 21.31 0.00 44.74 2.78
389 404 4.287720 GGTTTAAAGGAGTTTCAGCAACG 58.712 43.478 0.00 0.00 40.75 4.10
403 419 7.817962 AGTTTCAGCAACGTATCTACACTATTT 59.182 33.333 0.00 0.00 40.75 1.40
497 517 9.632807 GCAAATACATACTAGAAGGAGACTATG 57.367 37.037 0.00 0.00 42.68 2.23
682 707 6.738114 TCAATCAATGAAAGAACTGTTCCAC 58.262 36.000 16.48 9.07 34.30 4.02
964 1026 3.121030 CTTTGCCTAGCAGCGCGT 61.121 61.111 8.43 0.00 40.61 6.01
1006 1068 2.117156 ATCCAAGAGCGCATGGTGC 61.117 57.895 21.44 0.00 40.69 5.01
1724 1819 2.844223 GCTCAACTAATAAAAACGCGGC 59.156 45.455 12.47 0.00 0.00 6.53
1797 1898 5.992217 GCCCACTGGACTAGAGTATTAATTG 59.008 44.000 0.00 0.00 0.00 2.32
1866 1969 3.050275 GCAGCACCCCGTGTCTTC 61.050 66.667 0.00 0.00 35.75 2.87
1915 2018 0.103208 GATCTGTCCAGCCACGTAGG 59.897 60.000 0.00 0.00 41.84 3.18
1922 2025 1.561076 TCCAGCCACGTAGGAGTAGTA 59.439 52.381 8.04 0.00 41.22 1.82
1923 2026 1.948145 CCAGCCACGTAGGAGTAGTAG 59.052 57.143 8.04 0.00 41.22 2.57
1924 2027 1.948145 CAGCCACGTAGGAGTAGTAGG 59.052 57.143 8.04 0.00 41.22 3.18
1925 2028 1.842562 AGCCACGTAGGAGTAGTAGGA 59.157 52.381 8.04 0.00 41.22 2.94
1926 2029 2.158784 AGCCACGTAGGAGTAGTAGGAG 60.159 54.545 8.04 0.00 41.22 3.69
1927 2030 2.421248 GCCACGTAGGAGTAGTAGGAGT 60.421 54.545 8.04 0.00 41.22 3.85
1928 2031 3.181461 GCCACGTAGGAGTAGTAGGAGTA 60.181 52.174 8.04 0.00 41.22 2.59
1929 2032 4.630111 CCACGTAGGAGTAGTAGGAGTAG 58.370 52.174 0.00 0.00 41.22 2.57
1930 2033 4.100808 CCACGTAGGAGTAGTAGGAGTAGT 59.899 50.000 0.00 0.00 41.22 2.73
1931 2034 5.303078 CCACGTAGGAGTAGTAGGAGTAGTA 59.697 48.000 0.00 0.00 41.22 1.82
1932 2035 6.446318 CACGTAGGAGTAGTAGGAGTAGTAG 58.554 48.000 0.00 0.00 0.00 2.57
1933 2036 6.040391 CACGTAGGAGTAGTAGGAGTAGTAGT 59.960 46.154 0.00 0.00 0.00 2.73
1936 2039 7.039784 CGTAGGAGTAGTAGGAGTAGTAGTCAT 60.040 44.444 7.30 2.36 36.67 3.06
1976 2079 7.123355 TCCTTTTTCATTGACAAATTCCTGT 57.877 32.000 0.00 0.00 0.00 4.00
2025 2128 5.411361 TCCCAAAATACAGAAATCAGTCGTG 59.589 40.000 0.00 0.00 0.00 4.35
2033 2136 5.240891 ACAGAAATCAGTCGTGATCAACAT 58.759 37.500 0.00 0.00 43.04 2.71
2039 2142 3.119137 TCAGTCGTGATCAACATGTAGGG 60.119 47.826 0.00 0.00 36.90 3.53
2051 2154 5.308497 TCAACATGTAGGGGTAGTTTTCTGA 59.692 40.000 0.00 0.00 0.00 3.27
2081 2184 2.161609 GTGGCATTTTCGAGGTAGTTGG 59.838 50.000 0.00 0.00 0.00 3.77
2097 2200 3.013921 AGTTGGCTGAAAAGTTTCGTGA 58.986 40.909 0.00 0.00 40.01 4.35
2098 2201 3.065371 AGTTGGCTGAAAAGTTTCGTGAG 59.935 43.478 0.00 0.00 40.01 3.51
2099 2202 2.912771 TGGCTGAAAAGTTTCGTGAGA 58.087 42.857 0.00 0.00 40.01 3.27
2129 2232 0.886490 CTGGGTGTGACTTGTGGAGC 60.886 60.000 0.00 0.00 0.00 4.70
2147 2250 3.873952 GGAGCACTGTCATAATCTTCCAC 59.126 47.826 0.00 0.00 0.00 4.02
2185 2300 4.456911 CCATGCAACAATCTACACAAGTCT 59.543 41.667 0.00 0.00 0.00 3.24
2521 2636 0.038526 AAGACCGGCTGTACAACTCG 60.039 55.000 0.00 1.16 0.00 4.18
2548 2663 2.434359 GCCTACGTTGCCGCTTCT 60.434 61.111 0.00 0.00 37.70 2.85
2626 2741 4.351938 CGGTCGCCGTTGTCCTCA 62.352 66.667 9.69 0.00 42.73 3.86
2809 2924 1.593750 GGGCATCTACGAGCAGCTG 60.594 63.158 10.11 10.11 0.00 4.24
2827 2942 1.115326 TGATGCCGGAGATCGTGGAT 61.115 55.000 5.05 0.00 37.11 3.41
2842 2957 2.202987 GATCACCTGAGGGCGCAG 60.203 66.667 10.83 0.00 35.63 5.18
3619 3734 1.699656 CCGAAGCCTGAATCACTGCG 61.700 60.000 0.00 0.00 0.00 5.18
3895 4102 5.337578 TGTGATTGTGATCCGATGAACTA 57.662 39.130 0.00 0.00 0.00 2.24
3993 4200 3.584406 TTCTCTTGCTCTGCTACTCAC 57.416 47.619 0.00 0.00 0.00 3.51
4075 4282 5.300286 CCATACACTCCAAATGGATTCCTTC 59.700 44.000 1.93 0.00 44.46 3.46
4079 4286 6.552008 ACACTCCAAATGGATTCCTTCTAAA 58.448 36.000 1.93 0.00 44.46 1.85
4089 4296 5.163195 TGGATTCCTTCTAAAGGCTCCATAC 60.163 44.000 18.38 4.90 46.45 2.39
4099 4306 4.373156 AAGGCTCCATACACTTCACTTT 57.627 40.909 0.00 0.00 0.00 2.66
4142 4355 6.837471 ACTCGTAAAATACTTCCTCTGTCT 57.163 37.500 0.00 0.00 0.00 3.41
4143 4356 6.622549 ACTCGTAAAATACTTCCTCTGTCTG 58.377 40.000 0.00 0.00 0.00 3.51
4161 4374 1.597195 CTGCGCAAATATAACGGCTCA 59.403 47.619 13.05 0.00 0.00 4.26
4165 4378 3.421888 GCGCAAATATAACGGCTCATTTG 59.578 43.478 0.30 9.23 39.99 2.32
4166 4379 4.788201 GCGCAAATATAACGGCTCATTTGA 60.788 41.667 0.30 0.00 39.59 2.69
4167 4380 5.451908 CGCAAATATAACGGCTCATTTGAT 58.548 37.500 14.89 0.00 39.59 2.57
4168 4381 5.914635 CGCAAATATAACGGCTCATTTGATT 59.085 36.000 14.89 0.00 39.59 2.57
4169 4382 6.086765 CGCAAATATAACGGCTCATTTGATTC 59.913 38.462 14.89 2.19 39.59 2.52
4170 4383 6.917477 GCAAATATAACGGCTCATTTGATTCA 59.083 34.615 14.89 0.00 39.59 2.57
4171 4384 7.113965 GCAAATATAACGGCTCATTTGATTCAG 59.886 37.037 14.89 0.00 39.59 3.02
4172 4385 8.344831 CAAATATAACGGCTCATTTGATTCAGA 58.655 33.333 8.32 0.00 39.59 3.27
4173 4386 8.450578 AATATAACGGCTCATTTGATTCAGAA 57.549 30.769 0.00 0.00 0.00 3.02
4174 4387 4.691860 AACGGCTCATTTGATTCAGAAG 57.308 40.909 0.00 0.00 0.00 2.85
4175 4388 3.012518 ACGGCTCATTTGATTCAGAAGG 58.987 45.455 0.00 0.00 0.00 3.46
4176 4389 3.012518 CGGCTCATTTGATTCAGAAGGT 58.987 45.455 0.00 0.00 0.00 3.50
4177 4390 3.441572 CGGCTCATTTGATTCAGAAGGTT 59.558 43.478 0.00 0.00 0.00 3.50
4178 4391 4.082571 CGGCTCATTTGATTCAGAAGGTTT 60.083 41.667 0.00 0.00 0.00 3.27
4179 4392 5.565439 CGGCTCATTTGATTCAGAAGGTTTT 60.565 40.000 0.00 0.00 0.00 2.43
4180 4393 5.866092 GGCTCATTTGATTCAGAAGGTTTTC 59.134 40.000 0.00 0.00 0.00 2.29
4181 4394 6.449698 GCTCATTTGATTCAGAAGGTTTTCA 58.550 36.000 0.00 0.00 35.70 2.69
4182 4395 7.095270 GCTCATTTGATTCAGAAGGTTTTCAT 58.905 34.615 0.00 0.00 35.70 2.57
4183 4396 8.246180 GCTCATTTGATTCAGAAGGTTTTCATA 58.754 33.333 0.00 0.00 35.70 2.15
4184 4397 9.784680 CTCATTTGATTCAGAAGGTTTTCATAG 57.215 33.333 0.00 0.00 35.70 2.23
4185 4398 8.246180 TCATTTGATTCAGAAGGTTTTCATAGC 58.754 33.333 0.00 0.00 35.70 2.97
4186 4399 7.523293 TTTGATTCAGAAGGTTTTCATAGCA 57.477 32.000 0.00 0.00 35.70 3.49
4187 4400 7.523293 TTGATTCAGAAGGTTTTCATAGCAA 57.477 32.000 0.00 0.00 35.70 3.91
4188 4401 7.707624 TGATTCAGAAGGTTTTCATAGCAAT 57.292 32.000 0.00 0.00 35.70 3.56
4189 4402 8.125978 TGATTCAGAAGGTTTTCATAGCAATT 57.874 30.769 0.00 0.00 35.70 2.32
4190 4403 8.587608 TGATTCAGAAGGTTTTCATAGCAATTT 58.412 29.630 0.00 0.00 35.70 1.82
4191 4404 9.428097 GATTCAGAAGGTTTTCATAGCAATTTT 57.572 29.630 0.00 0.00 35.70 1.82
4192 4405 8.592105 TTCAGAAGGTTTTCATAGCAATTTTG 57.408 30.769 0.00 0.00 35.70 2.44
4193 4406 7.153985 TCAGAAGGTTTTCATAGCAATTTTGG 58.846 34.615 0.00 0.00 35.70 3.28
4194 4407 7.015098 TCAGAAGGTTTTCATAGCAATTTTGGA 59.985 33.333 0.00 0.00 35.70 3.53
4195 4408 7.330208 CAGAAGGTTTTCATAGCAATTTTGGAG 59.670 37.037 0.00 0.00 35.70 3.86
4196 4409 6.041423 AGGTTTTCATAGCAATTTTGGAGG 57.959 37.500 0.00 0.00 0.00 4.30
4197 4410 5.779771 AGGTTTTCATAGCAATTTTGGAGGA 59.220 36.000 0.00 0.00 0.00 3.71
4198 4411 6.441604 AGGTTTTCATAGCAATTTTGGAGGAT 59.558 34.615 0.00 0.00 0.00 3.24
4199 4412 7.038088 AGGTTTTCATAGCAATTTTGGAGGATT 60.038 33.333 0.00 0.00 0.00 3.01
4200 4413 8.257306 GGTTTTCATAGCAATTTTGGAGGATTA 58.743 33.333 0.00 0.00 0.00 1.75
4201 4414 9.651913 GTTTTCATAGCAATTTTGGAGGATTAA 57.348 29.630 0.00 0.00 0.00 1.40
4204 4417 9.651913 TTCATAGCAATTTTGGAGGATTAAAAC 57.348 29.630 0.00 0.00 0.00 2.43
4205 4418 8.257306 TCATAGCAATTTTGGAGGATTAAAACC 58.743 33.333 0.00 0.00 0.00 3.27
4206 4419 5.804639 AGCAATTTTGGAGGATTAAAACCC 58.195 37.500 0.00 0.00 0.00 4.11
4207 4420 5.547666 AGCAATTTTGGAGGATTAAAACCCT 59.452 36.000 0.00 0.00 35.02 4.34
4208 4421 6.044287 AGCAATTTTGGAGGATTAAAACCCTT 59.956 34.615 0.00 0.00 31.84 3.95
4209 4422 7.236640 AGCAATTTTGGAGGATTAAAACCCTTA 59.763 33.333 0.00 0.00 31.84 2.69
4210 4423 7.549134 GCAATTTTGGAGGATTAAAACCCTTAG 59.451 37.037 0.00 0.00 31.84 2.18
4211 4424 7.733773 ATTTTGGAGGATTAAAACCCTTAGG 57.266 36.000 0.00 0.00 40.04 2.69
4212 4425 6.471942 TTTGGAGGATTAAAACCCTTAGGA 57.528 37.500 0.00 0.00 36.73 2.94
4213 4426 6.471942 TTGGAGGATTAAAACCCTTAGGAA 57.528 37.500 0.00 0.00 36.73 3.36
4214 4427 6.668133 TGGAGGATTAAAACCCTTAGGAAT 57.332 37.500 0.00 0.00 36.73 3.01
4215 4428 7.051696 TGGAGGATTAAAACCCTTAGGAATT 57.948 36.000 0.00 0.00 36.73 2.17
4216 4429 7.483881 TGGAGGATTAAAACCCTTAGGAATTT 58.516 34.615 0.00 3.20 36.73 1.82
4217 4430 7.959152 TGGAGGATTAAAACCCTTAGGAATTTT 59.041 33.333 14.53 14.53 36.73 1.82
4218 4431 8.822805 GGAGGATTAAAACCCTTAGGAATTTTT 58.177 33.333 15.09 12.04 36.73 1.94
4240 4453 7.969536 TTTTCTTTGTTGGTTGTTTGATTCA 57.030 28.000 0.00 0.00 0.00 2.57
4241 4454 7.969536 TTTCTTTGTTGGTTGTTTGATTCAA 57.030 28.000 0.00 0.00 0.00 2.69
4242 4455 8.558973 TTTCTTTGTTGGTTGTTTGATTCAAT 57.441 26.923 0.00 0.00 0.00 2.57
4243 4456 7.536895 TCTTTGTTGGTTGTTTGATTCAATG 57.463 32.000 0.00 0.00 0.00 2.82
4244 4457 7.102346 TCTTTGTTGGTTGTTTGATTCAATGT 58.898 30.769 0.00 0.00 0.00 2.71
4245 4458 6.659361 TTGTTGGTTGTTTGATTCAATGTG 57.341 33.333 0.00 0.00 0.00 3.21
4246 4459 5.970592 TGTTGGTTGTTTGATTCAATGTGA 58.029 33.333 0.00 0.00 0.00 3.58
4247 4460 6.401394 TGTTGGTTGTTTGATTCAATGTGAA 58.599 32.000 0.00 0.00 41.09 3.18
4248 4461 6.312426 TGTTGGTTGTTTGATTCAATGTGAAC 59.688 34.615 0.00 0.00 39.45 3.18
4249 4462 5.355596 TGGTTGTTTGATTCAATGTGAACC 58.644 37.500 15.61 15.61 39.45 3.62
4250 4463 5.128499 TGGTTGTTTGATTCAATGTGAACCT 59.872 36.000 19.52 0.00 39.45 3.50
4251 4464 6.322456 TGGTTGTTTGATTCAATGTGAACCTA 59.678 34.615 19.52 10.62 39.45 3.08
4252 4465 7.015098 TGGTTGTTTGATTCAATGTGAACCTAT 59.985 33.333 19.52 0.00 39.45 2.57
4253 4466 8.519526 GGTTGTTTGATTCAATGTGAACCTATA 58.480 33.333 15.39 0.00 39.45 1.31
4256 4469 9.460019 TGTTTGATTCAATGTGAACCTATATGA 57.540 29.630 0.00 0.00 39.45 2.15
4325 4538 9.528018 AGCATTTTTAGAATCGTTTTGAAAGAA 57.472 25.926 0.00 0.00 0.00 2.52
4332 4545 9.677567 TTAGAATCGTTTTGAAAGAATCCTTTG 57.322 29.630 0.00 0.00 42.30 2.77
4333 4546 7.716612 AGAATCGTTTTGAAAGAATCCTTTGT 58.283 30.769 0.00 0.00 42.30 2.83
4334 4547 8.197439 AGAATCGTTTTGAAAGAATCCTTTGTT 58.803 29.630 0.00 0.00 42.30 2.83
4335 4548 8.716646 AATCGTTTTGAAAGAATCCTTTGTTT 57.283 26.923 0.00 0.00 42.30 2.83
4336 4549 8.716646 ATCGTTTTGAAAGAATCCTTTGTTTT 57.283 26.923 0.00 0.00 42.30 2.43
4337 4550 8.541133 TCGTTTTGAAAGAATCCTTTGTTTTT 57.459 26.923 0.00 0.00 42.30 1.94
4338 4551 8.652463 TCGTTTTGAAAGAATCCTTTGTTTTTC 58.348 29.630 0.00 0.00 42.30 2.29
4339 4552 8.655970 CGTTTTGAAAGAATCCTTTGTTTTTCT 58.344 29.630 0.00 0.00 42.30 2.52
4346 4559 8.992835 AAGAATCCTTTGTTTTTCTATGATGC 57.007 30.769 0.00 0.00 0.00 3.91
4347 4560 8.125978 AGAATCCTTTGTTTTTCTATGATGCA 57.874 30.769 0.00 0.00 0.00 3.96
4348 4561 8.587608 AGAATCCTTTGTTTTTCTATGATGCAA 58.412 29.630 0.00 0.00 0.00 4.08
4349 4562 9.374838 GAATCCTTTGTTTTTCTATGATGCAAT 57.625 29.630 0.00 0.00 0.00 3.56
4350 4563 8.937634 ATCCTTTGTTTTTCTATGATGCAATC 57.062 30.769 0.00 0.00 45.83 2.67
4363 4576 2.996249 TGCAATCAAGCAACCCAAAA 57.004 40.000 0.00 0.00 42.46 2.44
4364 4577 3.488778 TGCAATCAAGCAACCCAAAAT 57.511 38.095 0.00 0.00 42.46 1.82
4365 4578 3.401182 TGCAATCAAGCAACCCAAAATC 58.599 40.909 0.00 0.00 42.46 2.17
4366 4579 3.181457 TGCAATCAAGCAACCCAAAATCA 60.181 39.130 0.00 0.00 42.46 2.57
4367 4580 4.004982 GCAATCAAGCAACCCAAAATCAT 58.995 39.130 0.00 0.00 0.00 2.45
4368 4581 4.142773 GCAATCAAGCAACCCAAAATCATG 60.143 41.667 0.00 0.00 0.00 3.07
4369 4582 4.895668 ATCAAGCAACCCAAAATCATGT 57.104 36.364 0.00 0.00 0.00 3.21
4370 4583 5.999205 ATCAAGCAACCCAAAATCATGTA 57.001 34.783 0.00 0.00 0.00 2.29
4371 4584 5.389859 TCAAGCAACCCAAAATCATGTAG 57.610 39.130 0.00 0.00 0.00 2.74
4372 4585 4.220382 TCAAGCAACCCAAAATCATGTAGG 59.780 41.667 0.00 0.00 0.00 3.18
4373 4586 4.046286 AGCAACCCAAAATCATGTAGGA 57.954 40.909 0.00 0.00 0.00 2.94
4374 4587 4.613437 AGCAACCCAAAATCATGTAGGAT 58.387 39.130 0.00 0.00 0.00 3.24
4375 4588 5.025453 AGCAACCCAAAATCATGTAGGATT 58.975 37.500 0.00 0.00 39.11 3.01
4376 4589 5.105228 AGCAACCCAAAATCATGTAGGATTG 60.105 40.000 0.00 0.00 37.55 2.67
4377 4590 5.105392 GCAACCCAAAATCATGTAGGATTGA 60.105 40.000 0.00 0.00 37.55 2.57
4378 4591 6.574073 GCAACCCAAAATCATGTAGGATTGAA 60.574 38.462 0.00 0.00 37.55 2.69
4379 4592 7.385267 CAACCCAAAATCATGTAGGATTGAAA 58.615 34.615 0.00 0.00 37.55 2.69
4380 4593 7.738437 ACCCAAAATCATGTAGGATTGAAAT 57.262 32.000 0.00 0.00 37.55 2.17
4381 4594 7.558604 ACCCAAAATCATGTAGGATTGAAATG 58.441 34.615 0.00 0.00 37.55 2.32
4382 4595 7.399765 ACCCAAAATCATGTAGGATTGAAATGA 59.600 33.333 0.00 0.00 37.55 2.57
4383 4596 7.924412 CCCAAAATCATGTAGGATTGAAATGAG 59.076 37.037 0.00 0.00 37.55 2.90
4384 4597 7.437267 CCAAAATCATGTAGGATTGAAATGAGC 59.563 37.037 0.00 0.00 37.55 4.26
4385 4598 7.649533 AAATCATGTAGGATTGAAATGAGCA 57.350 32.000 0.00 0.00 37.55 4.26
4386 4599 7.834881 AATCATGTAGGATTGAAATGAGCAT 57.165 32.000 0.00 0.00 36.20 3.79
4387 4600 6.628919 TCATGTAGGATTGAAATGAGCATG 57.371 37.500 0.00 0.00 34.33 4.06
4388 4601 6.358991 TCATGTAGGATTGAAATGAGCATGA 58.641 36.000 0.00 0.00 38.15 3.07
4389 4602 6.261603 TCATGTAGGATTGAAATGAGCATGAC 59.738 38.462 0.00 0.00 36.37 3.06
4390 4603 5.499313 TGTAGGATTGAAATGAGCATGACA 58.501 37.500 0.00 0.00 0.00 3.58
4391 4604 6.124340 TGTAGGATTGAAATGAGCATGACAT 58.876 36.000 0.00 0.00 0.00 3.06
4392 4605 6.604396 TGTAGGATTGAAATGAGCATGACATT 59.396 34.615 11.11 11.11 0.00 2.71
4393 4606 6.540438 AGGATTGAAATGAGCATGACATTT 57.460 33.333 22.15 22.15 0.00 2.32
4394 4607 6.942976 AGGATTGAAATGAGCATGACATTTT 58.057 32.000 22.56 13.12 0.00 1.82
4395 4608 8.070034 AGGATTGAAATGAGCATGACATTTTA 57.930 30.769 22.56 18.48 0.00 1.52
4396 4609 8.533657 AGGATTGAAATGAGCATGACATTTTAA 58.466 29.630 23.56 23.56 0.00 1.52
4397 4610 9.321562 GGATTGAAATGAGCATGACATTTTAAT 57.678 29.630 27.48 27.48 0.00 1.40
4399 4612 8.706492 TTGAAATGAGCATGACATTTTAATCC 57.294 30.769 22.56 14.54 0.00 3.01
4400 4613 8.070034 TGAAATGAGCATGACATTTTAATCCT 57.930 30.769 22.56 7.74 0.00 3.24
4401 4614 9.187996 TGAAATGAGCATGACATTTTAATCCTA 57.812 29.630 22.56 8.98 0.00 2.94
4403 4616 9.976511 AAATGAGCATGACATTTTAATCCTATG 57.023 29.630 18.73 0.00 0.00 2.23
4404 4617 8.701908 ATGAGCATGACATTTTAATCCTATGT 57.298 30.769 0.00 0.00 35.33 2.29
4405 4618 8.523915 TGAGCATGACATTTTAATCCTATGTT 57.476 30.769 0.00 0.00 32.94 2.71
4406 4619 8.970020 TGAGCATGACATTTTAATCCTATGTTT 58.030 29.630 0.00 0.00 32.94 2.83
4407 4620 9.807649 GAGCATGACATTTTAATCCTATGTTTT 57.192 29.630 0.00 0.00 32.94 2.43
4419 4632 6.575162 ATCCTATGTTTTTCATATTCCCGC 57.425 37.500 0.00 0.00 38.21 6.13
4420 4633 5.441500 TCCTATGTTTTTCATATTCCCGCA 58.558 37.500 0.00 0.00 38.21 5.69
4421 4634 6.068010 TCCTATGTTTTTCATATTCCCGCAT 58.932 36.000 0.00 0.00 38.21 4.73
4422 4635 6.549364 TCCTATGTTTTTCATATTCCCGCATT 59.451 34.615 0.00 0.00 38.21 3.56
4423 4636 7.069331 TCCTATGTTTTTCATATTCCCGCATTT 59.931 33.333 0.00 0.00 38.21 2.32
4424 4637 7.710475 CCTATGTTTTTCATATTCCCGCATTTT 59.290 33.333 0.00 0.00 38.21 1.82
4425 4638 7.920160 ATGTTTTTCATATTCCCGCATTTTT 57.080 28.000 0.00 0.00 34.67 1.94
4427 4640 8.472683 TGTTTTTCATATTCCCGCATTTTTAG 57.527 30.769 0.00 0.00 0.00 1.85
4428 4641 8.307483 TGTTTTTCATATTCCCGCATTTTTAGA 58.693 29.630 0.00 0.00 0.00 2.10
4429 4642 9.145865 GTTTTTCATATTCCCGCATTTTTAGAA 57.854 29.630 0.00 0.00 0.00 2.10
4430 4643 9.883142 TTTTTCATATTCCCGCATTTTTAGAAT 57.117 25.926 0.00 0.00 0.00 2.40
4431 4644 9.528018 TTTTCATATTCCCGCATTTTTAGAATC 57.472 29.630 0.00 0.00 0.00 2.52
4432 4645 7.214467 TCATATTCCCGCATTTTTAGAATCC 57.786 36.000 0.00 0.00 0.00 3.01
4433 4646 7.004086 TCATATTCCCGCATTTTTAGAATCCT 58.996 34.615 0.00 0.00 0.00 3.24
4434 4647 4.981806 TTCCCGCATTTTTAGAATCCTG 57.018 40.909 0.00 0.00 0.00 3.86
4435 4648 4.229304 TCCCGCATTTTTAGAATCCTGA 57.771 40.909 0.00 0.00 0.00 3.86
4436 4649 4.199310 TCCCGCATTTTTAGAATCCTGAG 58.801 43.478 0.00 0.00 0.00 3.35
4437 4650 4.080582 TCCCGCATTTTTAGAATCCTGAGA 60.081 41.667 0.00 0.00 0.00 3.27
4438 4651 4.640201 CCCGCATTTTTAGAATCCTGAGAA 59.360 41.667 0.00 0.00 0.00 2.87
4439 4652 5.300286 CCCGCATTTTTAGAATCCTGAGAAT 59.700 40.000 0.00 0.00 0.00 2.40
4440 4653 6.433766 CCGCATTTTTAGAATCCTGAGAATC 58.566 40.000 0.00 0.00 0.00 2.52
4454 4667 4.494091 TGAGAATCAAAGAGGCCCTAAG 57.506 45.455 0.00 0.00 45.97 2.18
4455 4668 4.104086 TGAGAATCAAAGAGGCCCTAAGA 58.896 43.478 0.00 0.00 45.97 2.10
4456 4669 4.723789 TGAGAATCAAAGAGGCCCTAAGAT 59.276 41.667 0.00 1.08 45.97 2.40
4457 4670 5.046288 AGAATCAAAGAGGCCCTAAGATG 57.954 43.478 0.00 0.00 0.00 2.90
4458 4671 4.476479 AGAATCAAAGAGGCCCTAAGATGT 59.524 41.667 0.00 0.00 0.00 3.06
4459 4672 4.870021 ATCAAAGAGGCCCTAAGATGTT 57.130 40.909 0.00 0.00 0.00 2.71
4460 4673 4.657814 TCAAAGAGGCCCTAAGATGTTT 57.342 40.909 0.00 0.00 0.00 2.83
4461 4674 4.998051 TCAAAGAGGCCCTAAGATGTTTT 58.002 39.130 0.00 0.00 0.00 2.43
4462 4675 4.766891 TCAAAGAGGCCCTAAGATGTTTTG 59.233 41.667 0.00 0.00 0.00 2.44
4463 4676 4.657814 AAGAGGCCCTAAGATGTTTTGA 57.342 40.909 0.00 0.00 0.00 2.69
4464 4677 4.227864 AGAGGCCCTAAGATGTTTTGAG 57.772 45.455 0.00 0.00 0.00 3.02
4465 4678 3.589288 AGAGGCCCTAAGATGTTTTGAGT 59.411 43.478 0.00 0.00 0.00 3.41
4466 4679 4.783227 AGAGGCCCTAAGATGTTTTGAGTA 59.217 41.667 0.00 0.00 0.00 2.59
4467 4680 5.430089 AGAGGCCCTAAGATGTTTTGAGTAT 59.570 40.000 0.00 0.00 0.00 2.12
4468 4681 5.685728 AGGCCCTAAGATGTTTTGAGTATC 58.314 41.667 0.00 0.00 0.00 2.24
4469 4682 5.430089 AGGCCCTAAGATGTTTTGAGTATCT 59.570 40.000 0.00 0.00 34.92 1.98
4470 4683 6.069381 AGGCCCTAAGATGTTTTGAGTATCTT 60.069 38.462 0.00 0.00 42.19 2.40
4471 4684 7.127339 AGGCCCTAAGATGTTTTGAGTATCTTA 59.873 37.037 0.00 0.00 40.53 2.10
4497 4710 9.772973 AGTATAGACTAGATACAGACTGAAGTG 57.227 37.037 10.08 0.00 32.65 3.16
4498 4711 9.767228 GTATAGACTAGATACAGACTGAAGTGA 57.233 37.037 10.08 0.00 31.30 3.41
4500 4713 9.860650 ATAGACTAGATACAGACTGAAGTGAAT 57.139 33.333 10.08 0.00 0.00 2.57
4501 4714 7.995289 AGACTAGATACAGACTGAAGTGAATG 58.005 38.462 10.08 0.00 0.00 2.67
4502 4715 7.831690 AGACTAGATACAGACTGAAGTGAATGA 59.168 37.037 10.08 0.00 0.00 2.57
4503 4716 7.767261 ACTAGATACAGACTGAAGTGAATGAC 58.233 38.462 10.08 0.00 0.00 3.06
4504 4717 6.596309 AGATACAGACTGAAGTGAATGACA 57.404 37.500 10.08 0.00 0.00 3.58
4505 4718 6.997655 AGATACAGACTGAAGTGAATGACAA 58.002 36.000 10.08 0.00 0.00 3.18
4506 4719 7.445121 AGATACAGACTGAAGTGAATGACAAA 58.555 34.615 10.08 0.00 0.00 2.83
4507 4720 5.741388 ACAGACTGAAGTGAATGACAAAC 57.259 39.130 10.08 0.00 0.00 2.93
4508 4721 5.185454 ACAGACTGAAGTGAATGACAAACA 58.815 37.500 10.08 0.00 0.00 2.83
4509 4722 5.065218 ACAGACTGAAGTGAATGACAAACAC 59.935 40.000 10.08 7.11 35.15 3.32
4510 4723 5.065090 CAGACTGAAGTGAATGACAAACACA 59.935 40.000 14.62 0.00 37.05 3.72
4511 4724 5.065218 AGACTGAAGTGAATGACAAACACAC 59.935 40.000 14.62 0.00 37.05 3.82
4512 4725 4.943705 ACTGAAGTGAATGACAAACACACT 59.056 37.500 14.62 0.00 42.40 3.55
4513 4726 6.112734 ACTGAAGTGAATGACAAACACACTA 58.887 36.000 14.62 3.36 40.23 2.74
4514 4727 6.597672 ACTGAAGTGAATGACAAACACACTAA 59.402 34.615 14.62 0.00 40.23 2.24
4515 4728 7.120579 ACTGAAGTGAATGACAAACACACTAAA 59.879 33.333 14.62 0.00 40.23 1.85
4516 4729 7.821652 TGAAGTGAATGACAAACACACTAAAA 58.178 30.769 14.62 0.00 40.23 1.52
4517 4730 7.753132 TGAAGTGAATGACAAACACACTAAAAC 59.247 33.333 14.62 0.00 40.23 2.43
4518 4731 6.255215 AGTGAATGACAAACACACTAAAACG 58.745 36.000 14.62 0.00 39.52 3.60
4519 4732 6.025280 GTGAATGACAAACACACTAAAACGT 58.975 36.000 9.48 0.00 35.06 3.99
4520 4733 6.021782 GTGAATGACAAACACACTAAAACGTG 60.022 38.462 9.48 0.00 40.67 4.49
4522 4735 6.665474 ATGACAAACACACTAAAACGTGTA 57.335 33.333 0.00 0.00 45.74 2.90
4523 4736 6.665474 TGACAAACACACTAAAACGTGTAT 57.335 33.333 0.00 0.00 45.74 2.29
4524 4737 7.767745 TGACAAACACACTAAAACGTGTATA 57.232 32.000 0.00 0.00 45.74 1.47
4525 4738 8.367943 TGACAAACACACTAAAACGTGTATAT 57.632 30.769 0.00 0.00 45.74 0.86
4526 4739 8.277018 TGACAAACACACTAAAACGTGTATATG 58.723 33.333 0.00 0.00 45.74 1.78
4527 4740 8.145316 ACAAACACACTAAAACGTGTATATGT 57.855 30.769 0.00 0.00 45.74 2.29
4528 4741 9.258826 ACAAACACACTAAAACGTGTATATGTA 57.741 29.630 0.00 0.00 45.74 2.29
4529 4742 9.519905 CAAACACACTAAAACGTGTATATGTAC 57.480 33.333 0.00 0.00 45.74 2.90
4530 4743 8.815141 AACACACTAAAACGTGTATATGTACA 57.185 30.769 0.00 0.00 45.74 2.90
4531 4744 8.991243 ACACACTAAAACGTGTATATGTACAT 57.009 30.769 13.93 13.93 45.74 2.29
4532 4745 9.079833 ACACACTAAAACGTGTATATGTACATC 57.920 33.333 12.68 0.00 45.74 3.06
4533 4746 9.297586 CACACTAAAACGTGTATATGTACATCT 57.702 33.333 12.68 5.18 45.74 2.90
4534 4747 9.297586 ACACTAAAACGTGTATATGTACATCTG 57.702 33.333 12.68 2.42 45.65 2.90
4535 4748 9.511144 CACTAAAACGTGTATATGTACATCTGA 57.489 33.333 12.68 0.00 42.43 3.27
4572 4785 9.840427 AAAAACATCTTATATTTGTGAACGGAG 57.160 29.630 0.00 0.00 0.00 4.63
4573 4786 7.553881 AACATCTTATATTTGTGAACGGAGG 57.446 36.000 0.00 0.00 0.00 4.30
4574 4787 6.055588 ACATCTTATATTTGTGAACGGAGGG 58.944 40.000 0.00 0.00 0.00 4.30
4575 4788 5.943349 TCTTATATTTGTGAACGGAGGGA 57.057 39.130 0.00 0.00 0.00 4.20
4576 4789 5.914033 TCTTATATTTGTGAACGGAGGGAG 58.086 41.667 0.00 0.00 0.00 4.30
4577 4790 5.424252 TCTTATATTTGTGAACGGAGGGAGT 59.576 40.000 0.00 0.00 0.00 3.85
4578 4791 6.608405 TCTTATATTTGTGAACGGAGGGAGTA 59.392 38.462 0.00 0.00 0.00 2.59
4579 4792 2.825861 TTTGTGAACGGAGGGAGTAC 57.174 50.000 0.00 0.00 0.00 2.73
4580 4793 2.005370 TTGTGAACGGAGGGAGTACT 57.995 50.000 0.00 0.00 0.00 2.73
4581 4794 1.542492 TGTGAACGGAGGGAGTACTC 58.458 55.000 14.87 14.87 36.76 2.59
4582 4795 1.202964 TGTGAACGGAGGGAGTACTCA 60.203 52.381 23.91 0.00 39.27 3.41
4583 4796 1.201880 GTGAACGGAGGGAGTACTCAC 59.798 57.143 23.91 21.11 39.27 3.51
4584 4797 1.202964 TGAACGGAGGGAGTACTCACA 60.203 52.381 26.59 1.15 39.27 3.58
4585 4798 1.201880 GAACGGAGGGAGTACTCACAC 59.798 57.143 26.59 20.12 39.27 3.82
4586 4799 0.111832 ACGGAGGGAGTACTCACACA 59.888 55.000 26.59 0.00 39.27 3.72
4587 4800 1.272536 ACGGAGGGAGTACTCACACAT 60.273 52.381 26.59 10.01 39.27 3.21
4588 4801 1.135139 CGGAGGGAGTACTCACACATG 59.865 57.143 26.59 12.87 39.27 3.21
4589 4802 2.457598 GGAGGGAGTACTCACACATGA 58.542 52.381 26.59 0.00 39.27 3.07
4590 4803 3.034635 GGAGGGAGTACTCACACATGAT 58.965 50.000 26.59 4.88 39.27 2.45
4591 4804 3.181471 GGAGGGAGTACTCACACATGATG 60.181 52.174 26.59 0.00 39.27 3.07
4592 4805 2.169352 AGGGAGTACTCACACATGATGC 59.831 50.000 26.59 4.06 34.87 3.91
4593 4806 2.196749 GGAGTACTCACACATGATGCG 58.803 52.381 23.91 0.00 33.22 4.73
4594 4807 2.159240 GGAGTACTCACACATGATGCGA 60.159 50.000 23.91 0.00 33.22 5.10
4595 4808 3.511699 GAGTACTCACACATGATGCGAA 58.488 45.455 18.20 0.00 33.22 4.70
4596 4809 3.925379 AGTACTCACACATGATGCGAAA 58.075 40.909 0.00 0.00 33.22 3.46
4597 4810 3.928992 AGTACTCACACATGATGCGAAAG 59.071 43.478 0.00 0.00 33.22 2.62
4598 4811 3.044235 ACTCACACATGATGCGAAAGA 57.956 42.857 0.00 0.00 33.22 2.52
4599 4812 3.402110 ACTCACACATGATGCGAAAGAA 58.598 40.909 0.00 0.00 33.22 2.52
4600 4813 3.187227 ACTCACACATGATGCGAAAGAAC 59.813 43.478 0.00 0.00 33.22 3.01
4601 4814 3.137533 TCACACATGATGCGAAAGAACA 58.862 40.909 0.00 0.00 0.00 3.18
4602 4815 3.563390 TCACACATGATGCGAAAGAACAA 59.437 39.130 0.00 0.00 0.00 2.83
4603 4816 3.665409 CACACATGATGCGAAAGAACAAC 59.335 43.478 0.00 0.00 0.00 3.32
4604 4817 3.314913 ACACATGATGCGAAAGAACAACA 59.685 39.130 0.00 0.00 0.00 3.33
4605 4818 4.202000 ACACATGATGCGAAAGAACAACAA 60.202 37.500 0.00 0.00 0.00 2.83
4606 4819 4.739228 CACATGATGCGAAAGAACAACAAA 59.261 37.500 0.00 0.00 0.00 2.83
4607 4820 4.739716 ACATGATGCGAAAGAACAACAAAC 59.260 37.500 0.00 0.00 0.00 2.93
4608 4821 4.630894 TGATGCGAAAGAACAACAAACT 57.369 36.364 0.00 0.00 0.00 2.66
4609 4822 4.350346 TGATGCGAAAGAACAACAAACTG 58.650 39.130 0.00 0.00 0.00 3.16
4610 4823 4.095632 TGATGCGAAAGAACAACAAACTGA 59.904 37.500 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 75 5.444176 TGAAAACTCCTTTAAAACCCGGTA 58.556 37.500 0.00 0.00 0.00 4.02
104 109 6.816136 TCATAATGGAAAAGAGTGCGATCTA 58.184 36.000 0.00 0.00 0.00 1.98
105 110 5.674525 TCATAATGGAAAAGAGTGCGATCT 58.325 37.500 0.00 0.00 0.00 2.75
106 111 5.525378 ACTCATAATGGAAAAGAGTGCGATC 59.475 40.000 0.00 0.00 38.08 3.69
141 148 8.293867 CCTCGTTAAAAACCATTATGAGAAACA 58.706 33.333 0.00 0.00 0.00 2.83
191 199 6.062095 CGGTAGGGAAAATGGAAAGTATGAT 58.938 40.000 0.00 0.00 0.00 2.45
249 260 9.877178 ACTCATCGATAAGTTTAGAGAACAATT 57.123 29.630 12.16 0.00 0.00 2.32
265 276 7.170393 TGAAGAAGGAGAAAACTCATCGATA 57.830 36.000 0.00 0.00 0.00 2.92
364 378 4.282496 TGCTGAAACTCCTTTAAACCCAA 58.718 39.130 0.00 0.00 0.00 4.12
382 397 6.757010 AGGAAAATAGTGTAGATACGTTGCTG 59.243 38.462 0.00 0.00 0.00 4.41
497 517 9.770097 TTCTCTTTGTGAATATACATCATCCTC 57.230 33.333 0.00 0.00 0.00 3.71
671 696 2.029918 GGAGCAAATGGTGGAACAGTTC 60.030 50.000 4.52 4.52 41.80 3.01
682 707 1.480137 ACGAGAGAGAGGAGCAAATGG 59.520 52.381 0.00 0.00 0.00 3.16
973 1035 1.227556 GGATGGAATGGACCGGTCG 60.228 63.158 27.68 0.00 0.00 4.79
1438 1518 1.293963 TGGTAGTCGTCGTCGTCCTG 61.294 60.000 1.33 0.00 38.33 3.86
1536 1616 2.558313 GCCAGCAGCTTGACGAAC 59.442 61.111 0.00 0.00 38.99 3.95
1658 1738 3.319198 GGGCCGTCCAAGTCCAGA 61.319 66.667 0.00 0.00 35.00 3.86
1693 1788 3.838244 ATTAGTTGAGCTAATCCGGCA 57.162 42.857 0.00 0.00 44.68 5.69
1722 1817 4.053295 TCGTATCGTAGCAATTAAAGGCC 58.947 43.478 0.00 0.00 0.00 5.19
1724 1819 7.007188 CGACTATCGTATCGTAGCAATTAAAGG 59.993 40.741 0.00 0.00 34.72 3.11
1797 1898 7.096551 TCTGGCAAACATTAAATTCCTTAAGC 58.903 34.615 0.00 0.00 32.98 3.09
1807 1908 7.891183 TCCTACCTAAATCTGGCAAACATTAAA 59.109 33.333 0.00 0.00 0.00 1.52
1866 1969 5.149273 CAAGATAATCGGCGATGGAAATTG 58.851 41.667 24.73 19.00 0.00 2.32
1915 2018 8.206189 AGTTGATGACTACTACTCCTACTACTC 58.794 40.741 0.00 0.00 36.65 2.59
1922 2025 4.142359 CGCAAGTTGATGACTACTACTCCT 60.142 45.833 7.16 0.00 37.72 3.69
1923 2026 4.106197 CGCAAGTTGATGACTACTACTCC 58.894 47.826 7.16 0.00 37.72 3.85
1924 2027 3.548268 GCGCAAGTTGATGACTACTACTC 59.452 47.826 7.16 0.00 37.72 2.59
1925 2028 3.193691 AGCGCAAGTTGATGACTACTACT 59.806 43.478 11.47 0.00 37.72 2.57
1926 2029 3.512680 AGCGCAAGTTGATGACTACTAC 58.487 45.455 11.47 0.00 37.72 2.73
1927 2030 3.868757 AGCGCAAGTTGATGACTACTA 57.131 42.857 11.47 0.00 37.72 1.82
1928 2031 2.751166 AGCGCAAGTTGATGACTACT 57.249 45.000 11.47 0.00 37.72 2.57
1929 2032 2.736721 TGAAGCGCAAGTTGATGACTAC 59.263 45.455 11.47 0.00 37.72 2.73
1930 2033 3.038788 TGAAGCGCAAGTTGATGACTA 57.961 42.857 11.47 0.00 37.72 2.59
1931 2034 1.882912 TGAAGCGCAAGTTGATGACT 58.117 45.000 11.47 0.00 41.47 3.41
1932 2035 2.907910 ATGAAGCGCAAGTTGATGAC 57.092 45.000 11.47 0.00 41.68 3.06
1933 2036 2.162208 GGAATGAAGCGCAAGTTGATGA 59.838 45.455 11.47 0.00 41.68 2.92
1936 2039 1.896220 AGGAATGAAGCGCAAGTTGA 58.104 45.000 11.47 0.00 41.68 3.18
1976 2079 6.887626 AACGAAAAAGGCCACTAATTAGAA 57.112 33.333 19.38 0.00 0.00 2.10
2025 2128 6.316390 CAGAAAACTACCCCTACATGTTGATC 59.684 42.308 2.30 0.00 0.00 2.92
2033 2136 6.442541 TGATTTCAGAAAACTACCCCTACA 57.557 37.500 0.00 0.00 0.00 2.74
2039 2142 5.048013 CCACCCTTGATTTCAGAAAACTACC 60.048 44.000 0.00 0.00 0.00 3.18
2051 2154 2.896685 TCGAAAATGCCACCCTTGATTT 59.103 40.909 0.00 0.00 0.00 2.17
2081 2184 4.376514 GCTACTCTCACGAAACTTTTCAGC 60.377 45.833 2.77 0.00 37.01 4.26
2097 2200 3.327757 TCACACCCAGAAATTGCTACTCT 59.672 43.478 0.00 0.00 0.00 3.24
2098 2201 3.437049 GTCACACCCAGAAATTGCTACTC 59.563 47.826 0.00 0.00 0.00 2.59
2099 2202 3.073062 AGTCACACCCAGAAATTGCTACT 59.927 43.478 0.00 0.00 0.00 2.57
2129 2232 4.201753 CGCAAGTGGAAGATTATGACAGTG 60.202 45.833 0.00 0.00 0.00 3.66
2147 2250 0.374758 CATGGATCGTTGACCGCAAG 59.625 55.000 0.00 0.00 34.01 4.01
2185 2300 7.492669 TCCAGCAACAACGAAAATCAAAATTAA 59.507 29.630 0.00 0.00 0.00 1.40
2338 2453 3.680786 ACCTCGTACTGCTGCGCA 61.681 61.111 10.98 10.98 36.92 6.09
2473 2588 2.679996 GGTGGGTGTTGATGCCCC 60.680 66.667 0.00 0.00 44.20 5.80
2618 2733 2.425592 CTGGCACGGTGAGGACAA 59.574 61.111 13.29 0.00 0.00 3.18
2809 2924 0.389166 GATCCACGATCTCCGGCATC 60.389 60.000 0.00 0.00 43.93 3.91
3526 3641 3.319198 CCCGGCCACCAGTACTGT 61.319 66.667 21.18 7.09 0.00 3.55
3619 3734 6.749923 AAAGAATGTAGACCTGCTTGAATC 57.250 37.500 0.00 0.00 0.00 2.52
3708 3827 2.240493 ACACCAAGAAAGTCGACTGG 57.760 50.000 20.85 18.46 0.00 4.00
3777 3984 5.636903 AACCACATCAATGCTCCTACTAT 57.363 39.130 0.00 0.00 0.00 2.12
3887 4094 6.963049 ACGAATTTACAGGTGTAGTTCATC 57.037 37.500 13.36 0.00 31.88 2.92
3895 4102 8.508875 CCTTTATAACAACGAATTTACAGGTGT 58.491 33.333 0.00 0.00 0.00 4.16
3931 4138 9.541143 GGATTTTCCTTTAGAACAACATTTCAA 57.459 29.630 0.00 0.00 32.95 2.69
3944 4151 7.328493 GTCATTTTCGTTGGGATTTTCCTTTAG 59.672 37.037 0.00 0.00 36.57 1.85
4075 4282 5.091261 AGTGAAGTGTATGGAGCCTTTAG 57.909 43.478 0.00 0.00 0.00 1.85
4079 4286 4.042187 AGAAAAGTGAAGTGTATGGAGCCT 59.958 41.667 0.00 0.00 0.00 4.58
4123 4336 4.033014 GCGCAGACAGAGGAAGTATTTTAC 59.967 45.833 0.30 0.00 0.00 2.01
4142 4355 1.657822 TGAGCCGTTATATTTGCGCA 58.342 45.000 5.66 5.66 0.00 6.09
4143 4356 2.969443 ATGAGCCGTTATATTTGCGC 57.031 45.000 0.00 0.00 0.00 6.09
4161 4374 8.125978 TGCTATGAAAACCTTCTGAATCAAAT 57.874 30.769 0.00 0.00 32.33 2.32
4165 4378 8.992835 AAATTGCTATGAAAACCTTCTGAATC 57.007 30.769 0.00 0.00 32.33 2.52
4166 4379 9.211485 CAAAATTGCTATGAAAACCTTCTGAAT 57.789 29.630 0.00 0.00 32.33 2.57
4167 4380 7.656948 CCAAAATTGCTATGAAAACCTTCTGAA 59.343 33.333 0.00 0.00 32.33 3.02
4168 4381 7.015098 TCCAAAATTGCTATGAAAACCTTCTGA 59.985 33.333 0.00 0.00 32.33 3.27
4169 4382 7.153985 TCCAAAATTGCTATGAAAACCTTCTG 58.846 34.615 0.00 0.00 32.33 3.02
4170 4383 7.301868 TCCAAAATTGCTATGAAAACCTTCT 57.698 32.000 0.00 0.00 32.33 2.85
4171 4384 6.591448 CCTCCAAAATTGCTATGAAAACCTTC 59.409 38.462 0.00 0.00 0.00 3.46
4172 4385 6.269769 TCCTCCAAAATTGCTATGAAAACCTT 59.730 34.615 0.00 0.00 0.00 3.50
4173 4386 5.779771 TCCTCCAAAATTGCTATGAAAACCT 59.220 36.000 0.00 0.00 0.00 3.50
4174 4387 6.036577 TCCTCCAAAATTGCTATGAAAACC 57.963 37.500 0.00 0.00 0.00 3.27
4175 4388 9.651913 TTAATCCTCCAAAATTGCTATGAAAAC 57.348 29.630 0.00 0.00 0.00 2.43
4178 4391 9.651913 GTTTTAATCCTCCAAAATTGCTATGAA 57.348 29.630 0.00 0.00 0.00 2.57
4179 4392 8.257306 GGTTTTAATCCTCCAAAATTGCTATGA 58.743 33.333 0.00 0.00 0.00 2.15
4180 4393 7.495606 GGGTTTTAATCCTCCAAAATTGCTATG 59.504 37.037 0.00 0.00 0.00 2.23
4181 4394 7.402941 AGGGTTTTAATCCTCCAAAATTGCTAT 59.597 33.333 0.00 0.00 32.95 2.97
4182 4395 6.728632 AGGGTTTTAATCCTCCAAAATTGCTA 59.271 34.615 0.00 0.00 32.95 3.49
4183 4396 5.547666 AGGGTTTTAATCCTCCAAAATTGCT 59.452 36.000 0.00 0.00 32.95 3.91
4184 4397 5.804639 AGGGTTTTAATCCTCCAAAATTGC 58.195 37.500 0.00 0.00 32.95 3.56
4185 4398 8.040727 CCTAAGGGTTTTAATCCTCCAAAATTG 58.959 37.037 0.00 0.00 39.03 2.32
4186 4399 7.959152 TCCTAAGGGTTTTAATCCTCCAAAATT 59.041 33.333 0.00 0.00 39.03 1.82
4187 4400 7.483881 TCCTAAGGGTTTTAATCCTCCAAAAT 58.516 34.615 0.00 0.00 39.03 1.82
4188 4401 6.865520 TCCTAAGGGTTTTAATCCTCCAAAA 58.134 36.000 0.00 0.00 39.03 2.44
4189 4402 6.471942 TCCTAAGGGTTTTAATCCTCCAAA 57.528 37.500 0.00 0.00 39.03 3.28
4190 4403 6.471942 TTCCTAAGGGTTTTAATCCTCCAA 57.528 37.500 0.00 0.00 39.03 3.53
4191 4404 6.668133 ATTCCTAAGGGTTTTAATCCTCCA 57.332 37.500 0.00 0.00 39.03 3.86
4192 4405 7.973048 AAATTCCTAAGGGTTTTAATCCTCC 57.027 36.000 0.00 0.00 39.03 4.30
4215 4428 8.383318 TGAATCAAACAACCAACAAAGAAAAA 57.617 26.923 0.00 0.00 0.00 1.94
4216 4429 7.969536 TGAATCAAACAACCAACAAAGAAAA 57.030 28.000 0.00 0.00 0.00 2.29
4217 4430 7.969536 TTGAATCAAACAACCAACAAAGAAA 57.030 28.000 0.00 0.00 0.00 2.52
4218 4431 7.605691 ACATTGAATCAAACAACCAACAAAGAA 59.394 29.630 0.00 0.00 0.00 2.52
4219 4432 7.064371 CACATTGAATCAAACAACCAACAAAGA 59.936 33.333 0.00 0.00 0.00 2.52
4220 4433 7.064371 TCACATTGAATCAAACAACCAACAAAG 59.936 33.333 0.00 0.00 0.00 2.77
4221 4434 6.875726 TCACATTGAATCAAACAACCAACAAA 59.124 30.769 0.00 0.00 0.00 2.83
4222 4435 6.401394 TCACATTGAATCAAACAACCAACAA 58.599 32.000 0.00 0.00 0.00 2.83
4223 4436 5.970592 TCACATTGAATCAAACAACCAACA 58.029 33.333 0.00 0.00 0.00 3.33
4224 4437 6.238076 GGTTCACATTGAATCAAACAACCAAC 60.238 38.462 16.92 9.16 38.79 3.77
4225 4438 5.814705 GGTTCACATTGAATCAAACAACCAA 59.185 36.000 16.92 0.00 38.79 3.67
4226 4439 5.128499 AGGTTCACATTGAATCAAACAACCA 59.872 36.000 20.77 0.00 39.87 3.67
4227 4440 5.600696 AGGTTCACATTGAATCAAACAACC 58.399 37.500 15.27 15.27 39.87 3.77
4230 4443 9.460019 TCATATAGGTTCACATTGAATCAAACA 57.540 29.630 0.00 0.00 39.87 2.83
4299 4512 9.528018 TTCTTTCAAAACGATTCTAAAAATGCT 57.472 25.926 0.00 0.00 0.00 3.79
4306 4519 9.677567 CAAAGGATTCTTTCAAAACGATTCTAA 57.322 29.630 0.00 0.00 40.92 2.10
4307 4520 8.846211 ACAAAGGATTCTTTCAAAACGATTCTA 58.154 29.630 0.00 0.00 40.92 2.10
4308 4521 7.716612 ACAAAGGATTCTTTCAAAACGATTCT 58.283 30.769 0.00 0.00 40.92 2.40
4309 4522 7.930513 ACAAAGGATTCTTTCAAAACGATTC 57.069 32.000 0.00 0.00 40.92 2.52
4310 4523 8.716646 AAACAAAGGATTCTTTCAAAACGATT 57.283 26.923 0.00 0.00 40.92 3.34
4311 4524 8.716646 AAAACAAAGGATTCTTTCAAAACGAT 57.283 26.923 0.00 0.00 40.92 3.73
4312 4525 8.541133 AAAAACAAAGGATTCTTTCAAAACGA 57.459 26.923 0.00 0.00 40.92 3.85
4313 4526 8.655970 AGAAAAACAAAGGATTCTTTCAAAACG 58.344 29.630 0.00 0.00 40.92 3.60
4320 4533 9.428097 GCATCATAGAAAAACAAAGGATTCTTT 57.572 29.630 0.00 0.00 43.41 2.52
4321 4534 8.587608 TGCATCATAGAAAAACAAAGGATTCTT 58.412 29.630 0.00 0.00 34.24 2.52
4322 4535 8.125978 TGCATCATAGAAAAACAAAGGATTCT 57.874 30.769 0.00 0.00 36.24 2.40
4323 4536 8.761575 TTGCATCATAGAAAAACAAAGGATTC 57.238 30.769 0.00 0.00 0.00 2.52
4324 4537 9.374838 GATTGCATCATAGAAAAACAAAGGATT 57.625 29.630 0.00 0.00 0.00 3.01
4325 4538 8.533657 TGATTGCATCATAGAAAAACAAAGGAT 58.466 29.630 0.00 0.00 33.59 3.24
4326 4539 7.894708 TGATTGCATCATAGAAAAACAAAGGA 58.105 30.769 0.00 0.00 33.59 3.36
4327 4540 8.537049 TTGATTGCATCATAGAAAAACAAAGG 57.463 30.769 0.00 0.00 39.39 3.11
4328 4541 8.166706 GCTTGATTGCATCATAGAAAAACAAAG 58.833 33.333 0.00 0.00 39.39 2.77
4329 4542 7.656542 TGCTTGATTGCATCATAGAAAAACAAA 59.343 29.630 0.00 0.00 39.39 2.83
4330 4543 7.153315 TGCTTGATTGCATCATAGAAAAACAA 58.847 30.769 0.00 0.00 39.39 2.83
4331 4544 6.689554 TGCTTGATTGCATCATAGAAAAACA 58.310 32.000 0.00 0.00 39.39 2.83
4332 4545 7.412237 GGTTGCTTGATTGCATCATAGAAAAAC 60.412 37.037 0.00 2.23 42.96 2.43
4333 4546 6.591062 GGTTGCTTGATTGCATCATAGAAAAA 59.409 34.615 0.00 0.00 42.96 1.94
4334 4547 6.101332 GGTTGCTTGATTGCATCATAGAAAA 58.899 36.000 0.00 0.00 42.96 2.29
4335 4548 5.394443 GGGTTGCTTGATTGCATCATAGAAA 60.394 40.000 0.00 0.00 42.96 2.52
4336 4549 4.098349 GGGTTGCTTGATTGCATCATAGAA 59.902 41.667 0.00 0.00 42.96 2.10
4337 4550 3.633525 GGGTTGCTTGATTGCATCATAGA 59.366 43.478 0.00 0.00 42.96 1.98
4338 4551 3.382227 TGGGTTGCTTGATTGCATCATAG 59.618 43.478 0.00 0.00 42.96 2.23
4339 4552 3.363627 TGGGTTGCTTGATTGCATCATA 58.636 40.909 0.00 0.00 42.96 2.15
4340 4553 2.181125 TGGGTTGCTTGATTGCATCAT 58.819 42.857 0.00 0.00 42.96 2.45
4341 4554 1.630223 TGGGTTGCTTGATTGCATCA 58.370 45.000 0.00 0.00 42.96 3.07
4342 4555 2.747396 TTGGGTTGCTTGATTGCATC 57.253 45.000 0.00 0.00 42.96 3.91
4343 4556 3.488778 TTTTGGGTTGCTTGATTGCAT 57.511 38.095 0.00 0.00 42.96 3.96
4344 4557 2.996249 TTTTGGGTTGCTTGATTGCA 57.004 40.000 0.00 0.00 41.65 4.08
4345 4558 3.401182 TGATTTTGGGTTGCTTGATTGC 58.599 40.909 0.00 0.00 0.00 3.56
4346 4559 4.998672 ACATGATTTTGGGTTGCTTGATTG 59.001 37.500 0.00 0.00 0.00 2.67
4347 4560 5.231702 ACATGATTTTGGGTTGCTTGATT 57.768 34.783 0.00 0.00 0.00 2.57
4348 4561 4.895668 ACATGATTTTGGGTTGCTTGAT 57.104 36.364 0.00 0.00 0.00 2.57
4349 4562 4.220382 CCTACATGATTTTGGGTTGCTTGA 59.780 41.667 0.00 0.00 0.00 3.02
4350 4563 4.220382 TCCTACATGATTTTGGGTTGCTTG 59.780 41.667 0.00 0.00 0.00 4.01
4351 4564 4.415596 TCCTACATGATTTTGGGTTGCTT 58.584 39.130 0.00 0.00 0.00 3.91
4352 4565 4.046286 TCCTACATGATTTTGGGTTGCT 57.954 40.909 0.00 0.00 0.00 3.91
4353 4566 5.105392 TCAATCCTACATGATTTTGGGTTGC 60.105 40.000 0.00 0.00 38.41 4.17
4354 4567 6.528537 TCAATCCTACATGATTTTGGGTTG 57.471 37.500 0.00 6.77 39.50 3.77
4355 4568 7.552050 TTTCAATCCTACATGATTTTGGGTT 57.448 32.000 0.00 0.00 32.71 4.11
4356 4569 7.399765 TCATTTCAATCCTACATGATTTTGGGT 59.600 33.333 0.00 0.00 32.71 4.51
4357 4570 7.784037 TCATTTCAATCCTACATGATTTTGGG 58.216 34.615 0.00 0.00 32.71 4.12
4358 4571 7.437267 GCTCATTTCAATCCTACATGATTTTGG 59.563 37.037 0.00 0.00 32.71 3.28
4359 4572 7.977293 TGCTCATTTCAATCCTACATGATTTTG 59.023 33.333 0.00 0.00 32.71 2.44
4360 4573 8.070034 TGCTCATTTCAATCCTACATGATTTT 57.930 30.769 0.00 0.00 32.71 1.82
4361 4574 7.649533 TGCTCATTTCAATCCTACATGATTT 57.350 32.000 0.00 0.00 32.71 2.17
4362 4575 7.504574 TCATGCTCATTTCAATCCTACATGATT 59.495 33.333 0.00 0.00 37.16 2.57
4363 4576 7.002276 TCATGCTCATTTCAATCCTACATGAT 58.998 34.615 0.00 0.00 37.16 2.45
4364 4577 6.261603 GTCATGCTCATTTCAATCCTACATGA 59.738 38.462 0.00 0.00 39.10 3.07
4365 4578 6.038936 TGTCATGCTCATTTCAATCCTACATG 59.961 38.462 0.00 0.00 34.99 3.21
4366 4579 6.124340 TGTCATGCTCATTTCAATCCTACAT 58.876 36.000 0.00 0.00 0.00 2.29
4367 4580 5.499313 TGTCATGCTCATTTCAATCCTACA 58.501 37.500 0.00 0.00 0.00 2.74
4368 4581 6.630444 ATGTCATGCTCATTTCAATCCTAC 57.370 37.500 0.00 0.00 0.00 3.18
4369 4582 7.649533 AAATGTCATGCTCATTTCAATCCTA 57.350 32.000 17.00 0.00 40.13 2.94
4370 4583 6.540438 AAATGTCATGCTCATTTCAATCCT 57.460 33.333 17.00 1.61 40.13 3.24
4371 4584 8.706492 TTAAAATGTCATGCTCATTTCAATCC 57.294 30.769 20.48 0.00 42.31 3.01
4373 4586 9.321562 GGATTAAAATGTCATGCTCATTTCAAT 57.678 29.630 20.48 18.64 42.31 2.57
4374 4587 8.533657 AGGATTAAAATGTCATGCTCATTTCAA 58.466 29.630 20.48 15.99 42.31 2.69
4375 4588 8.070034 AGGATTAAAATGTCATGCTCATTTCA 57.930 30.769 20.48 14.32 42.31 2.69
4377 4590 9.976511 CATAGGATTAAAATGTCATGCTCATTT 57.023 29.630 17.00 17.00 44.14 2.32
4378 4591 9.139734 ACATAGGATTAAAATGTCATGCTCATT 57.860 29.630 9.18 9.18 37.14 2.57
4379 4592 8.701908 ACATAGGATTAAAATGTCATGCTCAT 57.298 30.769 0.00 0.00 0.00 2.90
4380 4593 8.523915 AACATAGGATTAAAATGTCATGCTCA 57.476 30.769 0.00 0.00 32.80 4.26
4381 4594 9.807649 AAAACATAGGATTAAAATGTCATGCTC 57.192 29.630 0.00 0.00 32.80 4.26
4393 4606 8.573035 GCGGGAATATGAAAAACATAGGATTAA 58.427 33.333 0.00 0.00 43.48 1.40
4394 4607 7.721842 TGCGGGAATATGAAAAACATAGGATTA 59.278 33.333 0.00 0.00 43.48 1.75
4395 4608 6.549364 TGCGGGAATATGAAAAACATAGGATT 59.451 34.615 0.00 0.00 43.48 3.01
4396 4609 6.068010 TGCGGGAATATGAAAAACATAGGAT 58.932 36.000 0.00 0.00 43.48 3.24
4397 4610 5.441500 TGCGGGAATATGAAAAACATAGGA 58.558 37.500 0.00 0.00 43.48 2.94
4398 4611 5.766150 TGCGGGAATATGAAAAACATAGG 57.234 39.130 0.00 0.00 43.48 2.57
4399 4612 8.647143 AAAATGCGGGAATATGAAAAACATAG 57.353 30.769 0.00 0.00 43.48 2.23
4401 4614 7.920160 AAAAATGCGGGAATATGAAAAACAT 57.080 28.000 0.00 0.00 42.39 2.71
4402 4615 8.307483 TCTAAAAATGCGGGAATATGAAAAACA 58.693 29.630 0.00 0.00 0.00 2.83
4403 4616 8.696410 TCTAAAAATGCGGGAATATGAAAAAC 57.304 30.769 0.00 0.00 0.00 2.43
4404 4617 9.883142 ATTCTAAAAATGCGGGAATATGAAAAA 57.117 25.926 0.00 0.00 0.00 1.94
4405 4618 9.528018 GATTCTAAAAATGCGGGAATATGAAAA 57.472 29.630 0.00 0.00 0.00 2.29
4406 4619 8.141268 GGATTCTAAAAATGCGGGAATATGAAA 58.859 33.333 0.00 0.00 0.00 2.69
4407 4620 7.505585 AGGATTCTAAAAATGCGGGAATATGAA 59.494 33.333 0.00 0.00 0.00 2.57
4408 4621 7.004086 AGGATTCTAAAAATGCGGGAATATGA 58.996 34.615 0.00 0.00 0.00 2.15
4409 4622 7.040478 TCAGGATTCTAAAAATGCGGGAATATG 60.040 37.037 0.00 0.00 0.00 1.78
4410 4623 7.004086 TCAGGATTCTAAAAATGCGGGAATAT 58.996 34.615 0.00 0.00 0.00 1.28
4411 4624 6.361433 TCAGGATTCTAAAAATGCGGGAATA 58.639 36.000 0.00 0.00 0.00 1.75
4412 4625 5.200483 TCAGGATTCTAAAAATGCGGGAAT 58.800 37.500 0.00 0.00 0.00 3.01
4413 4626 4.594970 TCAGGATTCTAAAAATGCGGGAA 58.405 39.130 0.00 0.00 0.00 3.97
4414 4627 4.080582 TCTCAGGATTCTAAAAATGCGGGA 60.081 41.667 0.00 0.00 0.00 5.14
4415 4628 4.199310 TCTCAGGATTCTAAAAATGCGGG 58.801 43.478 0.00 0.00 0.00 6.13
4416 4629 5.818136 TTCTCAGGATTCTAAAAATGCGG 57.182 39.130 0.00 0.00 0.00 5.69
4417 4630 7.019774 TGATTCTCAGGATTCTAAAAATGCG 57.980 36.000 0.00 0.00 0.00 4.73
4418 4631 9.298774 CTTTGATTCTCAGGATTCTAAAAATGC 57.701 33.333 0.00 0.00 0.00 3.56
4421 4634 9.236006 CCTCTTTGATTCTCAGGATTCTAAAAA 57.764 33.333 0.00 0.00 0.00 1.94
4422 4635 7.337942 GCCTCTTTGATTCTCAGGATTCTAAAA 59.662 37.037 0.00 0.00 0.00 1.52
4423 4636 6.825721 GCCTCTTTGATTCTCAGGATTCTAAA 59.174 38.462 0.00 0.00 0.00 1.85
4424 4637 6.352516 GCCTCTTTGATTCTCAGGATTCTAA 58.647 40.000 0.00 0.00 0.00 2.10
4425 4638 5.163258 GGCCTCTTTGATTCTCAGGATTCTA 60.163 44.000 0.00 0.00 0.00 2.10
4426 4639 4.385088 GGCCTCTTTGATTCTCAGGATTCT 60.385 45.833 0.00 0.00 0.00 2.40
4427 4640 3.882288 GGCCTCTTTGATTCTCAGGATTC 59.118 47.826 0.00 0.00 0.00 2.52
4428 4641 3.372458 GGGCCTCTTTGATTCTCAGGATT 60.372 47.826 0.84 0.00 0.00 3.01
4429 4642 2.174424 GGGCCTCTTTGATTCTCAGGAT 59.826 50.000 0.84 0.00 0.00 3.24
4430 4643 1.561542 GGGCCTCTTTGATTCTCAGGA 59.438 52.381 0.84 0.00 0.00 3.86
4431 4644 1.563410 AGGGCCTCTTTGATTCTCAGG 59.437 52.381 0.00 0.00 0.00 3.86
4432 4645 4.163078 TCTTAGGGCCTCTTTGATTCTCAG 59.837 45.833 10.74 0.00 0.00 3.35
4433 4646 4.104086 TCTTAGGGCCTCTTTGATTCTCA 58.896 43.478 10.74 0.00 0.00 3.27
4434 4647 4.762289 TCTTAGGGCCTCTTTGATTCTC 57.238 45.455 10.74 0.00 0.00 2.87
4435 4648 4.476479 ACATCTTAGGGCCTCTTTGATTCT 59.524 41.667 10.74 0.00 0.00 2.40
4436 4649 4.786425 ACATCTTAGGGCCTCTTTGATTC 58.214 43.478 10.74 0.00 0.00 2.52
4437 4650 4.870021 ACATCTTAGGGCCTCTTTGATT 57.130 40.909 10.74 0.00 0.00 2.57
4438 4651 4.870021 AACATCTTAGGGCCTCTTTGAT 57.130 40.909 10.74 7.00 0.00 2.57
4439 4652 4.657814 AAACATCTTAGGGCCTCTTTGA 57.342 40.909 10.74 4.61 0.00 2.69
4440 4653 4.766891 TCAAAACATCTTAGGGCCTCTTTG 59.233 41.667 10.74 6.74 0.00 2.77
4441 4654 4.998051 TCAAAACATCTTAGGGCCTCTTT 58.002 39.130 10.74 0.00 0.00 2.52
4442 4655 4.043435 ACTCAAAACATCTTAGGGCCTCTT 59.957 41.667 10.74 0.00 0.00 2.85
4443 4656 3.589288 ACTCAAAACATCTTAGGGCCTCT 59.411 43.478 10.74 0.00 0.00 3.69
4444 4657 3.956744 ACTCAAAACATCTTAGGGCCTC 58.043 45.455 10.74 0.00 0.00 4.70
4445 4658 5.430089 AGATACTCAAAACATCTTAGGGCCT 59.570 40.000 12.58 12.58 0.00 5.19
4446 4659 5.685728 AGATACTCAAAACATCTTAGGGCC 58.314 41.667 0.00 0.00 0.00 5.80
4447 4660 8.371770 CTAAGATACTCAAAACATCTTAGGGC 57.628 38.462 17.16 0.00 46.35 5.19
4471 4684 9.772973 CACTTCAGTCTGTATCTAGTCTATACT 57.227 37.037 0.00 0.00 39.91 2.12
4472 4685 9.767228 TCACTTCAGTCTGTATCTAGTCTATAC 57.233 37.037 0.00 0.00 0.00 1.47
4474 4687 9.860650 ATTCACTTCAGTCTGTATCTAGTCTAT 57.139 33.333 0.00 0.00 0.00 1.98
4475 4688 9.114952 CATTCACTTCAGTCTGTATCTAGTCTA 57.885 37.037 0.00 0.00 0.00 2.59
4476 4689 7.831690 TCATTCACTTCAGTCTGTATCTAGTCT 59.168 37.037 0.00 0.00 0.00 3.24
4477 4690 7.913297 GTCATTCACTTCAGTCTGTATCTAGTC 59.087 40.741 0.00 0.00 0.00 2.59
4478 4691 7.394641 TGTCATTCACTTCAGTCTGTATCTAGT 59.605 37.037 0.00 0.00 0.00 2.57
4479 4692 7.766283 TGTCATTCACTTCAGTCTGTATCTAG 58.234 38.462 0.00 0.00 0.00 2.43
4480 4693 7.703058 TGTCATTCACTTCAGTCTGTATCTA 57.297 36.000 0.00 0.00 0.00 1.98
4481 4694 6.596309 TGTCATTCACTTCAGTCTGTATCT 57.404 37.500 0.00 0.00 0.00 1.98
4482 4695 7.171508 TGTTTGTCATTCACTTCAGTCTGTATC 59.828 37.037 0.00 0.00 0.00 2.24
4483 4696 6.992123 TGTTTGTCATTCACTTCAGTCTGTAT 59.008 34.615 0.00 0.00 0.00 2.29
4484 4697 6.257849 GTGTTTGTCATTCACTTCAGTCTGTA 59.742 38.462 0.00 0.00 0.00 2.74
4485 4698 5.065218 GTGTTTGTCATTCACTTCAGTCTGT 59.935 40.000 0.00 0.00 0.00 3.41
4486 4699 5.065090 TGTGTTTGTCATTCACTTCAGTCTG 59.935 40.000 0.00 0.00 33.82 3.51
4487 4700 5.065218 GTGTGTTTGTCATTCACTTCAGTCT 59.935 40.000 8.61 0.00 33.82 3.24
4488 4701 5.065218 AGTGTGTTTGTCATTCACTTCAGTC 59.935 40.000 8.61 0.00 36.17 3.51
4489 4702 4.943705 AGTGTGTTTGTCATTCACTTCAGT 59.056 37.500 8.61 0.00 36.17 3.41
4490 4703 5.490139 AGTGTGTTTGTCATTCACTTCAG 57.510 39.130 8.61 0.00 36.17 3.02
4491 4704 6.993786 TTAGTGTGTTTGTCATTCACTTCA 57.006 33.333 0.00 0.00 39.54 3.02
4492 4705 7.044966 CGTTTTAGTGTGTTTGTCATTCACTTC 60.045 37.037 0.00 3.98 39.54 3.01
4493 4706 6.745450 CGTTTTAGTGTGTTTGTCATTCACTT 59.255 34.615 0.00 2.32 39.54 3.16
4494 4707 6.128117 ACGTTTTAGTGTGTTTGTCATTCACT 60.128 34.615 0.00 0.00 41.32 3.41
4495 4708 6.021782 CACGTTTTAGTGTGTTTGTCATTCAC 60.022 38.462 0.00 0.00 37.35 3.18
4496 4709 6.024664 CACGTTTTAGTGTGTTTGTCATTCA 58.975 36.000 0.00 0.00 37.35 2.57
4497 4710 6.476863 CACGTTTTAGTGTGTTTGTCATTC 57.523 37.500 0.00 0.00 37.35 2.67
4509 4722 9.511144 TCAGATGTACATATACACGTTTTAGTG 57.489 33.333 8.71 0.00 44.11 2.74
4546 4759 9.840427 CTCCGTTCACAAATATAAGATGTTTTT 57.160 29.630 0.00 0.00 0.00 1.94
4547 4760 8.458843 CCTCCGTTCACAAATATAAGATGTTTT 58.541 33.333 0.00 0.00 0.00 2.43
4548 4761 7.067008 CCCTCCGTTCACAAATATAAGATGTTT 59.933 37.037 0.00 0.00 0.00 2.83
4549 4762 6.542370 CCCTCCGTTCACAAATATAAGATGTT 59.458 38.462 0.00 0.00 0.00 2.71
4550 4763 6.055588 CCCTCCGTTCACAAATATAAGATGT 58.944 40.000 0.00 0.00 0.00 3.06
4551 4764 6.288294 TCCCTCCGTTCACAAATATAAGATG 58.712 40.000 0.00 0.00 0.00 2.90
4552 4765 6.099845 ACTCCCTCCGTTCACAAATATAAGAT 59.900 38.462 0.00 0.00 0.00 2.40
4553 4766 5.424252 ACTCCCTCCGTTCACAAATATAAGA 59.576 40.000 0.00 0.00 0.00 2.10
4554 4767 5.671493 ACTCCCTCCGTTCACAAATATAAG 58.329 41.667 0.00 0.00 0.00 1.73
4555 4768 5.687166 ACTCCCTCCGTTCACAAATATAA 57.313 39.130 0.00 0.00 0.00 0.98
4556 4769 5.895534 AGTACTCCCTCCGTTCACAAATATA 59.104 40.000 0.00 0.00 0.00 0.86
4557 4770 4.715297 AGTACTCCCTCCGTTCACAAATAT 59.285 41.667 0.00 0.00 0.00 1.28
4558 4771 4.091549 AGTACTCCCTCCGTTCACAAATA 58.908 43.478 0.00 0.00 0.00 1.40
4559 4772 2.904434 AGTACTCCCTCCGTTCACAAAT 59.096 45.455 0.00 0.00 0.00 2.32
4560 4773 2.298163 GAGTACTCCCTCCGTTCACAAA 59.702 50.000 12.13 0.00 0.00 2.83
4561 4774 1.891150 GAGTACTCCCTCCGTTCACAA 59.109 52.381 12.13 0.00 0.00 3.33
4562 4775 1.202964 TGAGTACTCCCTCCGTTCACA 60.203 52.381 20.11 0.00 0.00 3.58
4563 4776 1.201880 GTGAGTACTCCCTCCGTTCAC 59.798 57.143 20.11 5.46 0.00 3.18
4564 4777 1.202964 TGTGAGTACTCCCTCCGTTCA 60.203 52.381 20.11 0.00 0.00 3.18
4565 4778 1.201880 GTGTGAGTACTCCCTCCGTTC 59.798 57.143 20.11 0.00 0.00 3.95
4566 4779 1.254954 GTGTGAGTACTCCCTCCGTT 58.745 55.000 20.11 0.00 0.00 4.44
4567 4780 0.111832 TGTGTGAGTACTCCCTCCGT 59.888 55.000 20.11 0.00 0.00 4.69
4568 4781 1.135139 CATGTGTGAGTACTCCCTCCG 59.865 57.143 20.11 1.04 0.00 4.63
4569 4782 2.457598 TCATGTGTGAGTACTCCCTCC 58.542 52.381 20.11 6.26 0.00 4.30
4570 4783 3.739519 GCATCATGTGTGAGTACTCCCTC 60.740 52.174 20.11 10.22 37.87 4.30
4571 4784 2.169352 GCATCATGTGTGAGTACTCCCT 59.831 50.000 20.11 0.00 37.87 4.20
4572 4785 2.555199 GCATCATGTGTGAGTACTCCC 58.445 52.381 20.11 9.54 37.87 4.30
4573 4786 2.159240 TCGCATCATGTGTGAGTACTCC 60.159 50.000 20.11 11.73 42.19 3.85
4574 4787 3.150848 TCGCATCATGTGTGAGTACTC 57.849 47.619 16.32 16.32 42.19 2.59
4580 4793 3.137533 TGTTCTTTCGCATCATGTGTGA 58.862 40.909 0.00 7.24 45.19 3.58
4581 4794 3.541071 TGTTCTTTCGCATCATGTGTG 57.459 42.857 0.00 0.00 39.73 3.82
4582 4795 3.314913 TGTTGTTCTTTCGCATCATGTGT 59.685 39.130 0.00 0.00 0.00 3.72
4583 4796 3.887741 TGTTGTTCTTTCGCATCATGTG 58.112 40.909 0.00 0.00 0.00 3.21
4584 4797 4.566545 TTGTTGTTCTTTCGCATCATGT 57.433 36.364 0.00 0.00 0.00 3.21
4585 4798 4.977963 AGTTTGTTGTTCTTTCGCATCATG 59.022 37.500 0.00 0.00 0.00 3.07
4586 4799 4.977963 CAGTTTGTTGTTCTTTCGCATCAT 59.022 37.500 0.00 0.00 0.00 2.45
4587 4800 4.095632 TCAGTTTGTTGTTCTTTCGCATCA 59.904 37.500 0.00 0.00 0.00 3.07
4588 4801 4.597079 TCAGTTTGTTGTTCTTTCGCATC 58.403 39.130 0.00 0.00 0.00 3.91
4589 4802 4.630894 TCAGTTTGTTGTTCTTTCGCAT 57.369 36.364 0.00 0.00 0.00 4.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.