Multiple sequence alignment - TraesCS3B01G252600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G252600 chr3B 100.000 5454 0 0 1 5454 405786676 405792129 0.000000e+00 10072.0
1 TraesCS3B01G252600 chr3B 75.562 1289 230 47 2289 3536 405818050 405819294 1.720000e-154 556.0
2 TraesCS3B01G252600 chr3B 94.737 228 9 2 94 319 405786726 405786952 8.690000e-93 351.0
3 TraesCS3B01G252600 chr3B 94.737 228 9 2 51 277 405786769 405786994 8.690000e-93 351.0
4 TraesCS3B01G252600 chr3B 93.651 189 7 4 138 324 405786726 405786911 1.500000e-70 278.0
5 TraesCS3B01G252600 chr3B 93.103 145 5 4 182 324 405786726 405786867 1.990000e-49 207.0
6 TraesCS3B01G252600 chr3B 93.103 145 5 4 51 192 405786857 405786999 1.990000e-49 207.0
7 TraesCS3B01G252600 chr3B 80.275 218 43 0 4221 4438 405826027 405826244 1.220000e-36 165.0
8 TraesCS3B01G252600 chr3B 92.079 101 3 4 226 324 405786726 405786823 2.650000e-28 137.0
9 TraesCS3B01G252600 chr3B 92.079 101 3 4 51 148 405786901 405786999 2.650000e-28 137.0
10 TraesCS3B01G252600 chr3B 88.372 86 10 0 2675 2760 71453762 71453677 2.690000e-18 104.0
11 TraesCS3B01G252600 chr3B 92.857 56 2 2 269 324 405786726 405786779 4.530000e-11 80.5
12 TraesCS3B01G252600 chr3B 92.857 56 2 2 51 104 405786944 405786999 4.530000e-11 80.5
13 TraesCS3B01G252600 chr3B 97.674 43 1 0 5102 5144 169261780 169261822 2.110000e-09 75.0
14 TraesCS3B01G252600 chr3B 97.619 42 1 0 5102 5143 434984563 434984604 7.580000e-09 73.1
15 TraesCS3B01G252600 chr3B 90.566 53 3 2 5093 5143 671671121 671671069 9.800000e-08 69.4
16 TraesCS3B01G252600 chr3B 100.000 28 0 0 5026 5053 620203415 620203442 1.000000e-02 52.8
17 TraesCS3B01G252600 chr3A 94.409 4597 152 28 534 5113 416305048 416300540 0.000000e+00 6968.0
18 TraesCS3B01G252600 chr3A 75.758 1287 232 47 2289 3536 416191473 416190228 4.740000e-160 575.0
19 TraesCS3B01G252600 chr3A 88.353 249 26 3 294 540 416305501 416305254 4.130000e-76 296.0
20 TraesCS3B01G252600 chr3A 79.817 218 44 0 4221 4438 416189507 416189290 5.650000e-35 159.0
21 TraesCS3B01G252600 chr3A 83.799 179 11 7 1426 1601 416303975 416303812 2.630000e-33 154.0
22 TraesCS3B01G252600 chr3D 97.757 2497 52 3 2032 4528 313785554 313783062 0.000000e+00 4298.0
23 TraesCS3B01G252600 chr3D 93.889 1260 52 8 795 2035 313793965 313792712 0.000000e+00 1877.0
24 TraesCS3B01G252600 chr3D 74.806 1286 245 46 2289 3536 313718227 313716983 1.750000e-139 507.0
25 TraesCS3B01G252600 chr3D 93.487 261 11 3 4681 4939 313782904 313782648 3.080000e-102 383.0
26 TraesCS3B01G252600 chr3D 87.500 248 10 2 534 780 313794177 313793950 3.240000e-67 267.0
27 TraesCS3B01G252600 chr3D 95.238 147 5 2 4517 4661 313783037 313782891 1.180000e-56 231.0
28 TraesCS3B01G252600 chr3D 85.455 220 28 2 315 534 313794603 313794388 5.500000e-55 226.0
29 TraesCS3B01G252600 chr3D 87.709 179 16 4 1426 1601 313793110 313792935 2.580000e-48 204.0
30 TraesCS3B01G252600 chr3D 80.882 204 39 0 4221 4424 313716261 313716058 1.570000e-35 161.0
31 TraesCS3B01G252600 chr3D 90.909 44 4 0 5026 5069 771994 771951 5.900000e-05 60.2
32 TraesCS3B01G252600 chr7A 97.552 286 7 0 3426 3711 646119944 646119659 1.770000e-134 490.0
33 TraesCS3B01G252600 chr7A 97.203 286 8 0 3426 3711 470752773 470753058 8.210000e-133 484.0
34 TraesCS3B01G252600 chr7A 95.349 43 2 0 5101 5143 510549954 510549996 9.800000e-08 69.4
35 TraesCS3B01G252600 chr5B 97.203 286 8 0 3426 3711 655601172 655600887 8.210000e-133 484.0
36 TraesCS3B01G252600 chr5B 98.780 82 1 0 4293 4374 40805587 40805506 4.400000e-31 147.0
37 TraesCS3B01G252600 chr7B 96.853 286 9 0 3426 3711 745420209 745419924 3.820000e-131 479.0
38 TraesCS3B01G252600 chr7B 96.503 286 10 0 3426 3711 377732370 377732655 1.780000e-129 473.0
39 TraesCS3B01G252600 chr7B 100.000 82 0 0 4293 4374 377733250 377733331 9.460000e-33 152.0
40 TraesCS3B01G252600 chr7B 98.361 61 1 0 4293 4353 745419329 745419269 2.080000e-19 108.0
41 TraesCS3B01G252600 chr5A 96.154 286 11 0 3426 3711 228406993 228407278 8.270000e-128 468.0
42 TraesCS3B01G252600 chr5A 93.617 47 2 1 5102 5148 16984065 16984020 9.800000e-08 69.4
43 TraesCS3B01G252600 chr4A 96.466 283 10 0 3429 3711 674219180 674218898 8.270000e-128 468.0
44 TraesCS3B01G252600 chr6D 94.231 104 4 1 310 411 444300234 444300337 2.030000e-34 158.0
45 TraesCS3B01G252600 chr6D 93.617 47 2 1 5102 5148 32919199 32919154 9.800000e-08 69.4
46 TraesCS3B01G252600 chr7D 91.964 112 6 3 302 413 614538233 614538341 2.630000e-33 154.0
47 TraesCS3B01G252600 chr7D 90.476 84 8 0 2677 2760 511058960 511059043 1.610000e-20 111.0
48 TraesCS3B01G252600 chr7D 89.535 86 9 0 2675 2760 580126180 580126095 5.780000e-20 110.0
49 TraesCS3B01G252600 chr2D 94.949 99 3 2 311 408 116763539 116763442 2.630000e-33 154.0
50 TraesCS3B01G252600 chr2D 97.753 89 2 0 317 405 117851300 117851212 2.630000e-33 154.0
51 TraesCS3B01G252600 chr2D 97.619 42 1 0 5101 5142 644714160 644714201 7.580000e-09 73.1
52 TraesCS3B01G252600 chr2B 97.753 89 2 0 317 405 168635751 168635663 2.630000e-33 154.0
53 TraesCS3B01G252600 chr2A 96.774 93 2 1 313 405 119098679 119098588 2.630000e-33 154.0
54 TraesCS3B01G252600 chr2A 89.474 57 6 0 5015 5071 352429264 352429320 7.580000e-09 73.1
55 TraesCS3B01G252600 chr1B 90.265 113 7 4 306 414 67450876 67450764 1.580000e-30 145.0
56 TraesCS3B01G252600 chr6B 90.698 86 8 0 2675 2760 182640366 182640281 1.240000e-21 115.0
57 TraesCS3B01G252600 chr6B 91.525 59 5 0 5014 5072 171969881 171969939 1.260000e-11 82.4
58 TraesCS3B01G252600 chr5D 95.556 45 2 0 5098 5142 38751875 38751831 7.580000e-09 73.1
59 TraesCS3B01G252600 chr1D 97.619 42 1 0 5101 5142 295974978 295975019 7.580000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G252600 chr3B 405786676 405792129 5453 False 10072.000000 10072 100.000000 1 5454 1 chr3B.!!$F2 5453
1 TraesCS3B01G252600 chr3B 405818050 405819294 1244 False 556.000000 556 75.562000 2289 3536 1 chr3B.!!$F3 1247
2 TraesCS3B01G252600 chr3A 416300540 416305501 4961 True 2472.666667 6968 88.853667 294 5113 3 chr3A.!!$R2 4819
3 TraesCS3B01G252600 chr3A 416189290 416191473 2183 True 367.000000 575 77.787500 2289 4438 2 chr3A.!!$R1 2149
4 TraesCS3B01G252600 chr3D 313782648 313785554 2906 True 1637.333333 4298 95.494000 2032 4939 3 chr3D.!!$R3 2907
5 TraesCS3B01G252600 chr3D 313792712 313794603 1891 True 643.500000 1877 88.638250 315 2035 4 chr3D.!!$R4 1720
6 TraesCS3B01G252600 chr3D 313716058 313718227 2169 True 334.000000 507 77.844000 2289 4424 2 chr3D.!!$R2 2135
7 TraesCS3B01G252600 chr7B 377732370 377733331 961 False 312.500000 473 98.251500 3426 4374 2 chr7B.!!$F1 948
8 TraesCS3B01G252600 chr7B 745419269 745420209 940 True 293.500000 479 97.607000 3426 4353 2 chr7B.!!$R1 927

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
469 470 0.472471 TCCTGACCGAGCCACTTTTT 59.528 50.000 0.0 0.0 0.00 1.94 F
1167 1399 0.537371 TCGTCAGTCAGCTCAGGTCA 60.537 55.000 0.0 0.0 0.00 4.02 F
1269 1501 1.146263 CAGGATAAGGGGTGCCGAC 59.854 63.158 0.0 0.0 0.00 4.79 F
1289 1521 1.229984 AGGAGGAAGGACAAGGGGG 60.230 63.158 0.0 0.0 0.00 5.40 F
3089 3356 0.461961 ATGAAGCTGACCGCCTACTC 59.538 55.000 0.0 0.0 40.39 2.59 F
4211 4693 1.806542 AGCTGTGCATTAAACCGTCAG 59.193 47.619 0.0 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1305 1537 1.377202 GCCACCAATCTTCTCCGCA 60.377 57.895 0.00 0.0 0.00 5.69 R
3020 3287 3.555586 GCCGAGTAGAAAAACCAGGTGTA 60.556 47.826 0.00 0.0 0.00 2.90 R
3089 3356 8.473219 TCAATATCTCTTCTGAATCCCATATCG 58.527 37.037 0.00 0.0 0.00 2.92 R
3307 3579 2.826725 CTCCTCGTCACCCTCTTTAACT 59.173 50.000 0.00 0.0 0.00 2.24 R
4424 4938 0.039165 CGAAAGCCAGGAACTTTGCC 60.039 55.000 0.00 0.0 37.47 4.52 R
5153 5708 0.036388 GGGTCGCTGATCCAAGTGAA 60.036 55.000 3.38 0.0 38.37 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 9.495382 AGGTCACTAGAGTAATTAGGAATTTCT 57.505 33.333 0.00 0.00 32.14 2.52
42 43 9.952188 GTAATTAGGAATTTCTACAAATGAGGC 57.048 33.333 0.00 0.00 32.18 4.70
43 44 7.588497 ATTAGGAATTTCTACAAATGAGGCC 57.412 36.000 0.00 0.00 32.18 5.19
44 45 4.934356 AGGAATTTCTACAAATGAGGCCA 58.066 39.130 5.01 0.00 32.18 5.36
45 46 5.332743 AGGAATTTCTACAAATGAGGCCAA 58.667 37.500 5.01 0.00 32.18 4.52
46 47 5.779771 AGGAATTTCTACAAATGAGGCCAAA 59.220 36.000 5.01 0.00 32.18 3.28
47 48 6.269769 AGGAATTTCTACAAATGAGGCCAAAA 59.730 34.615 5.01 0.00 32.18 2.44
48 49 6.591448 GGAATTTCTACAAATGAGGCCAAAAG 59.409 38.462 5.01 0.00 32.18 2.27
49 50 5.467035 TTTCTACAAATGAGGCCAAAAGG 57.533 39.130 5.01 0.00 0.00 3.11
50 51 4.380843 TCTACAAATGAGGCCAAAAGGA 57.619 40.909 5.01 0.00 0.00 3.36
51 52 4.735369 TCTACAAATGAGGCCAAAAGGAA 58.265 39.130 5.01 0.00 0.00 3.36
52 53 5.144100 TCTACAAATGAGGCCAAAAGGAAA 58.856 37.500 5.01 0.00 0.00 3.13
53 54 4.769345 ACAAATGAGGCCAAAAGGAAAA 57.231 36.364 5.01 0.00 0.00 2.29
54 55 5.109500 ACAAATGAGGCCAAAAGGAAAAA 57.891 34.783 5.01 0.00 0.00 1.94
78 79 8.533569 AAAAATTCCTTTCCAGAACAGTAGAA 57.466 30.769 0.00 0.00 0.00 2.10
79 80 8.533569 AAAATTCCTTTCCAGAACAGTAGAAA 57.466 30.769 0.00 0.00 0.00 2.52
80 81 7.511959 AATTCCTTTCCAGAACAGTAGAAAC 57.488 36.000 0.00 0.00 0.00 2.78
81 82 5.888982 TCCTTTCCAGAACAGTAGAAACT 57.111 39.130 0.00 0.00 35.91 2.66
118 119 7.423844 AAAAAGAAATCCTTTCCAGAACAGT 57.576 32.000 0.00 0.00 43.90 3.55
119 120 8.533569 AAAAAGAAATCCTTTCCAGAACAGTA 57.466 30.769 0.00 0.00 43.90 2.74
120 121 7.751768 AAAGAAATCCTTTCCAGAACAGTAG 57.248 36.000 0.00 0.00 40.97 2.57
121 122 6.688073 AGAAATCCTTTCCAGAACAGTAGA 57.312 37.500 0.00 0.00 40.54 2.59
122 123 7.079451 AGAAATCCTTTCCAGAACAGTAGAA 57.921 36.000 0.00 0.00 40.54 2.10
123 124 7.518188 AGAAATCCTTTCCAGAACAGTAGAAA 58.482 34.615 0.00 0.00 40.54 2.52
124 125 7.445707 AGAAATCCTTTCCAGAACAGTAGAAAC 59.554 37.037 0.00 0.00 40.54 2.78
125 126 5.888982 TCCTTTCCAGAACAGTAGAAACT 57.111 39.130 0.00 0.00 35.91 2.66
162 163 7.423844 AAAAAGAAATCCTTTCCAGAACAGT 57.576 32.000 0.00 0.00 43.90 3.55
163 164 8.533569 AAAAAGAAATCCTTTCCAGAACAGTA 57.466 30.769 0.00 0.00 43.90 2.74
164 165 7.751768 AAAGAAATCCTTTCCAGAACAGTAG 57.248 36.000 0.00 0.00 40.97 2.57
165 166 6.688073 AGAAATCCTTTCCAGAACAGTAGA 57.312 37.500 0.00 0.00 40.54 2.59
166 167 7.079451 AGAAATCCTTTCCAGAACAGTAGAA 57.921 36.000 0.00 0.00 40.54 2.10
167 168 7.518188 AGAAATCCTTTCCAGAACAGTAGAAA 58.482 34.615 0.00 0.00 40.54 2.52
168 169 7.445707 AGAAATCCTTTCCAGAACAGTAGAAAC 59.554 37.037 0.00 0.00 40.54 2.78
169 170 5.888982 TCCTTTCCAGAACAGTAGAAACT 57.111 39.130 0.00 0.00 35.91 2.66
206 207 7.423844 AAAAAGAAATCCTTTCCAGAACAGT 57.576 32.000 0.00 0.00 43.90 3.55
207 208 8.533569 AAAAAGAAATCCTTTCCAGAACAGTA 57.466 30.769 0.00 0.00 43.90 2.74
208 209 7.751768 AAAGAAATCCTTTCCAGAACAGTAG 57.248 36.000 0.00 0.00 40.97 2.57
209 210 6.688073 AGAAATCCTTTCCAGAACAGTAGA 57.312 37.500 0.00 0.00 40.54 2.59
210 211 7.079451 AGAAATCCTTTCCAGAACAGTAGAA 57.921 36.000 0.00 0.00 40.54 2.10
211 212 7.518188 AGAAATCCTTTCCAGAACAGTAGAAA 58.482 34.615 0.00 0.00 40.54 2.52
212 213 7.445707 AGAAATCCTTTCCAGAACAGTAGAAAC 59.554 37.037 0.00 0.00 40.54 2.78
213 214 4.969484 TCCTTTCCAGAACAGTAGAAACC 58.031 43.478 0.00 0.00 0.00 3.27
214 215 3.746492 CCTTTCCAGAACAGTAGAAACCG 59.254 47.826 0.00 0.00 0.00 4.44
215 216 4.502604 CCTTTCCAGAACAGTAGAAACCGA 60.503 45.833 0.00 0.00 0.00 4.69
216 217 4.675976 TTCCAGAACAGTAGAAACCGAA 57.324 40.909 0.00 0.00 0.00 4.30
217 218 4.252971 TCCAGAACAGTAGAAACCGAAG 57.747 45.455 0.00 0.00 0.00 3.79
250 251 7.423844 AAAAAGAAATCCTTTCCAGAACAGT 57.576 32.000 0.00 0.00 43.90 3.55
251 252 8.533569 AAAAAGAAATCCTTTCCAGAACAGTA 57.466 30.769 0.00 0.00 43.90 2.74
252 253 7.751768 AAAGAAATCCTTTCCAGAACAGTAG 57.248 36.000 0.00 0.00 40.97 2.57
253 254 6.688073 AGAAATCCTTTCCAGAACAGTAGA 57.312 37.500 0.00 0.00 40.54 2.59
254 255 7.079451 AGAAATCCTTTCCAGAACAGTAGAA 57.921 36.000 0.00 0.00 40.54 2.10
255 256 7.518188 AGAAATCCTTTCCAGAACAGTAGAAA 58.482 34.615 0.00 0.00 40.54 2.52
256 257 7.445707 AGAAATCCTTTCCAGAACAGTAGAAAC 59.554 37.037 0.00 0.00 40.54 2.78
257 258 5.888982 TCCTTTCCAGAACAGTAGAAACT 57.111 39.130 0.00 0.00 35.91 2.66
341 342 6.139679 AGAAATTGACAGGAGTGGGATTTA 57.860 37.500 0.00 0.00 0.00 1.40
415 416 2.498167 CCATCCGATCTTTGATGTCCC 58.502 52.381 12.76 0.00 37.30 4.46
439 440 8.940397 CCACTATTGGGATTACCTTTGATATT 57.060 34.615 0.00 0.00 39.57 1.28
445 446 8.477419 TTGGGATTACCTTTGATATTGGAATC 57.523 34.615 0.00 0.00 41.11 2.52
467 468 0.693049 ATTCCTGACCGAGCCACTTT 59.307 50.000 0.00 0.00 0.00 2.66
469 470 0.472471 TCCTGACCGAGCCACTTTTT 59.528 50.000 0.00 0.00 0.00 1.94
493 494 7.587037 TTCTTTCATTCAATCACCAGAAACT 57.413 32.000 0.00 0.00 0.00 2.66
548 767 3.194861 TCGGACCGATAAATGCTTCTTG 58.805 45.455 13.88 0.00 0.00 3.02
606 826 2.388735 TCGACCTATCATGGCTGAGTT 58.611 47.619 0.00 0.00 34.12 3.01
658 878 7.912383 ACCGGTTTGTCTGTAATAATAAATCG 58.088 34.615 0.00 0.00 33.04 3.34
731 953 4.263905 TGCTTTTGATATCCTGTCCCTGTT 60.264 41.667 0.00 0.00 0.00 3.16
732 954 4.706962 GCTTTTGATATCCTGTCCCTGTTT 59.293 41.667 0.00 0.00 0.00 2.83
773 995 1.191647 CACGCGTCTTTGAACTACCAC 59.808 52.381 9.86 0.00 0.00 4.16
774 996 1.068127 ACGCGTCTTTGAACTACCACT 59.932 47.619 5.58 0.00 0.00 4.00
775 997 1.455786 CGCGTCTTTGAACTACCACTG 59.544 52.381 0.00 0.00 0.00 3.66
776 998 2.750948 GCGTCTTTGAACTACCACTGA 58.249 47.619 0.00 0.00 0.00 3.41
777 999 2.475487 GCGTCTTTGAACTACCACTGAC 59.525 50.000 0.00 0.00 0.00 3.51
778 1000 3.799232 GCGTCTTTGAACTACCACTGACT 60.799 47.826 0.00 0.00 0.00 3.41
779 1001 3.982058 CGTCTTTGAACTACCACTGACTC 59.018 47.826 0.00 0.00 0.00 3.36
780 1002 4.308265 GTCTTTGAACTACCACTGACTCC 58.692 47.826 0.00 0.00 0.00 3.85
781 1003 3.323979 TCTTTGAACTACCACTGACTCCC 59.676 47.826 0.00 0.00 0.00 4.30
782 1004 1.640917 TGAACTACCACTGACTCCCC 58.359 55.000 0.00 0.00 0.00 4.81
783 1005 0.903236 GAACTACCACTGACTCCCCC 59.097 60.000 0.00 0.00 0.00 5.40
823 1045 3.689347 ACTGGCTCAGTGCAAATATTGA 58.311 40.909 7.00 0.00 43.63 2.57
828 1050 5.829391 TGGCTCAGTGCAAATATTGATGTAT 59.171 36.000 0.00 0.00 45.15 2.29
870 1099 9.233232 CTGTAATTTGCGGGACTAAAATAAATC 57.767 33.333 0.00 0.00 0.00 2.17
932 1163 5.221661 ACCCGGCGAAATATCTTATCTTCTT 60.222 40.000 9.30 0.00 0.00 2.52
985 1217 2.748647 CCAAAACCCTACGCCCCG 60.749 66.667 0.00 0.00 0.00 5.73
987 1219 4.037760 AAAACCCTACGCCCCGGG 62.038 66.667 15.80 15.80 46.26 5.73
1119 1351 4.840005 CGCGCCCCTTCTTCCCTC 62.840 72.222 0.00 0.00 0.00 4.30
1167 1399 0.537371 TCGTCAGTCAGCTCAGGTCA 60.537 55.000 0.00 0.00 0.00 4.02
1269 1501 1.146263 CAGGATAAGGGGTGCCGAC 59.854 63.158 0.00 0.00 0.00 4.79
1278 1510 3.379445 GGTGCCGACGAGGAGGAA 61.379 66.667 0.00 0.00 45.00 3.36
1280 1512 3.068691 TGCCGACGAGGAGGAAGG 61.069 66.667 0.00 0.00 45.00 3.46
1281 1513 2.754658 GCCGACGAGGAGGAAGGA 60.755 66.667 0.00 0.00 45.00 3.36
1282 1514 3.066233 GCCGACGAGGAGGAAGGAC 62.066 68.421 0.00 0.00 45.00 3.85
1289 1521 1.229984 AGGAGGAAGGACAAGGGGG 60.230 63.158 0.00 0.00 0.00 5.40
1305 1537 2.123726 GGGGCTCCGCAATTGGAT 60.124 61.111 7.72 0.00 37.41 3.41
1371 1627 4.178540 CACGGTAATAGAGAAAGCCGAAA 58.821 43.478 7.80 0.00 41.45 3.46
1383 1639 1.866925 GCCGAAAGCTACAAACGCT 59.133 52.632 0.00 0.00 39.94 5.07
1446 1702 7.624360 TTGAGTTAATGTCGCCTGATTTTAT 57.376 32.000 0.00 0.00 0.00 1.40
1456 1712 6.419413 TGTCGCCTGATTTTATTGTTTGAAAC 59.581 34.615 0.14 0.14 0.00 2.78
1567 1825 8.621532 TGTTCTGCTACAGTTAATTGATTCTT 57.378 30.769 4.81 0.00 32.61 2.52
1642 1900 6.591935 TGAGACTTTGAGGTCAGTTAATGTT 58.408 36.000 0.00 0.00 38.57 2.71
1647 1905 3.674997 TGAGGTCAGTTAATGTTGCCTC 58.325 45.455 11.24 11.24 40.46 4.70
1687 1945 5.757850 ATAAGAAATGTGGGCGATTCTTC 57.242 39.130 3.15 0.00 41.15 2.87
1688 1946 3.356529 AGAAATGTGGGCGATTCTTCT 57.643 42.857 0.00 0.00 0.00 2.85
1735 1993 7.444487 ACAGTGTGGTAGGAAGAAATTTAGAAC 59.556 37.037 0.00 0.00 0.00 3.01
2106 2364 9.495572 AGAAAAACATAGAACAACAACCAAAAA 57.504 25.926 0.00 0.00 0.00 1.94
2115 2373 7.580600 AGAACAACAACCAAAAATTTTGTGTC 58.419 30.769 16.15 8.31 33.73 3.67
2173 2431 2.408333 CCATCTGGAATTGGCGACC 58.592 57.895 0.00 0.00 37.39 4.79
2911 3178 3.955471 ACCCATGTCAGGTGATTACTTG 58.045 45.455 0.00 0.00 35.85 3.16
3020 3287 6.512514 AGGCTTAAGGATCATCTTGAGAAT 57.487 37.500 4.29 0.00 33.74 2.40
3089 3356 0.461961 ATGAAGCTGACCGCCTACTC 59.538 55.000 0.00 0.00 40.39 2.59
3307 3579 7.402071 AGGAAGGACTATAGGTTCATTAACACA 59.598 37.037 4.43 0.00 37.34 3.72
3826 4188 3.021695 CCTCGTCATACAGGTAGGTTCA 58.978 50.000 0.00 0.00 0.00 3.18
4136 4618 4.507869 GGGGAGGTTTATTGGTTGTGTAGT 60.508 45.833 0.00 0.00 0.00 2.73
4211 4693 1.806542 AGCTGTGCATTAAACCGTCAG 59.193 47.619 0.00 0.00 0.00 3.51
4661 5214 2.270352 TTGACGCCAAATCTTGACCT 57.730 45.000 0.00 0.00 0.00 3.85
4662 5215 1.808411 TGACGCCAAATCTTGACCTC 58.192 50.000 0.00 0.00 0.00 3.85
4676 5229 4.345257 TCTTGACCTCTTCTTTAGTGCTGT 59.655 41.667 0.00 0.00 0.00 4.40
4682 5235 4.333926 CCTCTTCTTTAGTGCTGTTATGCC 59.666 45.833 0.00 0.00 0.00 4.40
4721 5275 1.329256 ATCCATAGGAGACGGGTTCG 58.671 55.000 0.00 0.00 37.52 3.95
4879 5434 3.059120 TCGCTACGACATGTATCAGCTAC 60.059 47.826 17.86 0.00 29.25 3.58
4880 5435 3.227147 GCTACGACATGTATCAGCTACG 58.773 50.000 14.60 7.55 32.61 3.51
4881 5436 3.303857 GCTACGACATGTATCAGCTACGT 60.304 47.826 14.60 12.17 36.71 3.57
4882 5437 4.084171 GCTACGACATGTATCAGCTACGTA 60.084 45.833 14.60 12.56 34.70 3.57
4908 5463 7.926555 AGTATTTCTACCTGTTGTATGGAATCG 59.073 37.037 0.00 0.00 0.00 3.34
5004 5559 8.228206 TCCAGATAGATTGTATTACCTCAGTCT 58.772 37.037 0.00 0.00 35.46 3.24
5005 5560 8.519526 CCAGATAGATTGTATTACCTCAGTCTC 58.480 40.741 0.00 0.00 33.80 3.36
5007 5562 9.647918 AGATAGATTGTATTACCTCAGTCTCAA 57.352 33.333 0.00 0.00 33.80 3.02
5010 5565 8.140112 AGATTGTATTACCTCAGTCTCAAACT 57.860 34.615 0.00 0.00 39.44 2.66
5011 5566 9.256228 AGATTGTATTACCTCAGTCTCAAACTA 57.744 33.333 0.00 0.00 36.07 2.24
5012 5567 9.522804 GATTGTATTACCTCAGTCTCAAACTAG 57.477 37.037 0.00 0.00 36.07 2.57
5013 5568 8.418597 TTGTATTACCTCAGTCTCAAACTAGT 57.581 34.615 0.00 0.00 36.07 2.57
5014 5569 8.418597 TGTATTACCTCAGTCTCAAACTAGTT 57.581 34.615 1.12 1.12 36.07 2.24
5015 5570 8.304596 TGTATTACCTCAGTCTCAAACTAGTTG 58.695 37.037 9.34 3.91 36.07 3.16
5016 5571 6.726490 TTACCTCAGTCTCAAACTAGTTGT 57.274 37.500 9.34 1.14 38.47 3.32
5017 5572 5.203060 ACCTCAGTCTCAAACTAGTTGTC 57.797 43.478 9.34 0.00 38.47 3.18
5018 5573 4.896482 ACCTCAGTCTCAAACTAGTTGTCT 59.104 41.667 9.34 0.00 38.47 3.41
5019 5574 5.364157 ACCTCAGTCTCAAACTAGTTGTCTT 59.636 40.000 9.34 0.00 38.47 3.01
5020 5575 6.550108 ACCTCAGTCTCAAACTAGTTGTCTTA 59.450 38.462 9.34 0.00 38.47 2.10
5021 5576 7.087639 CCTCAGTCTCAAACTAGTTGTCTTAG 58.912 42.308 9.34 3.11 38.47 2.18
5022 5577 7.040340 CCTCAGTCTCAAACTAGTTGTCTTAGA 60.040 40.741 9.34 5.37 38.47 2.10
5023 5578 8.410673 TCAGTCTCAAACTAGTTGTCTTAGAT 57.589 34.615 9.34 0.00 38.47 1.98
5024 5579 8.861086 TCAGTCTCAAACTAGTTGTCTTAGATT 58.139 33.333 9.34 2.65 38.47 2.40
5025 5580 9.482627 CAGTCTCAAACTAGTTGTCTTAGATTT 57.517 33.333 9.34 0.00 38.47 2.17
5055 5610 7.091443 AGACAAATCTAAGACAACTAGTTCGG 58.909 38.462 4.77 0.00 31.46 4.30
5075 5630 2.038164 GGGACGGAGGAAGTACAAAACT 59.962 50.000 0.00 0.00 41.49 2.66
5100 5655 3.713826 TCCTTACACCCTGTTTGGATC 57.286 47.619 0.00 0.00 38.35 3.36
5104 5659 2.789409 ACACCCTGTTTGGATCTAGC 57.211 50.000 0.00 0.00 38.35 3.42
5107 5662 1.207329 ACCCTGTTTGGATCTAGCGTC 59.793 52.381 0.00 0.00 38.35 5.19
5113 5668 5.103290 TGTTTGGATCTAGCGTCAAAAAC 57.897 39.130 12.98 12.98 32.01 2.43
5114 5669 8.939520 CCTGTTTGGATCTAGCGTCAAAAACG 62.940 46.154 0.00 0.00 46.37 3.60
5129 5684 7.069569 CGTCAAAAACGCTCTTATATTATGGG 58.930 38.462 0.00 0.00 45.76 4.00
5130 5685 7.042321 CGTCAAAAACGCTCTTATATTATGGGA 60.042 37.037 0.00 0.00 45.76 4.37
5131 5686 8.784043 GTCAAAAACGCTCTTATATTATGGGAT 58.216 33.333 0.00 0.00 0.00 3.85
5132 5687 8.783093 TCAAAAACGCTCTTATATTATGGGATG 58.217 33.333 0.00 0.00 0.00 3.51
5133 5688 8.783093 CAAAAACGCTCTTATATTATGGGATGA 58.217 33.333 0.00 0.00 0.00 2.92
5134 5689 8.918202 AAAACGCTCTTATATTATGGGATGAA 57.082 30.769 0.00 0.00 0.00 2.57
5135 5690 8.553459 AAACGCTCTTATATTATGGGATGAAG 57.447 34.615 0.00 0.00 0.00 3.02
5136 5691 6.644347 ACGCTCTTATATTATGGGATGAAGG 58.356 40.000 0.00 0.00 0.00 3.46
5137 5692 6.051717 CGCTCTTATATTATGGGATGAAGGG 58.948 44.000 0.00 0.00 0.00 3.95
5138 5693 6.127054 CGCTCTTATATTATGGGATGAAGGGA 60.127 42.308 0.00 0.00 0.00 4.20
5139 5694 7.278875 GCTCTTATATTATGGGATGAAGGGAG 58.721 42.308 0.00 0.00 0.00 4.30
5140 5695 7.092668 GCTCTTATATTATGGGATGAAGGGAGT 60.093 40.741 0.00 0.00 0.00 3.85
5141 5696 9.494055 CTCTTATATTATGGGATGAAGGGAGTA 57.506 37.037 0.00 0.00 0.00 2.59
5142 5697 9.494055 TCTTATATTATGGGATGAAGGGAGTAG 57.506 37.037 0.00 0.00 0.00 2.57
5143 5698 9.494055 CTTATATTATGGGATGAAGGGAGTAGA 57.506 37.037 0.00 0.00 0.00 2.59
5144 5699 7.741554 ATATTATGGGATGAAGGGAGTAGAC 57.258 40.000 0.00 0.00 0.00 2.59
5145 5700 2.940514 TGGGATGAAGGGAGTAGACA 57.059 50.000 0.00 0.00 0.00 3.41
5146 5701 3.421394 TGGGATGAAGGGAGTAGACAT 57.579 47.619 0.00 0.00 0.00 3.06
5147 5702 3.736094 TGGGATGAAGGGAGTAGACATT 58.264 45.455 0.00 0.00 0.00 2.71
5148 5703 4.890988 TGGGATGAAGGGAGTAGACATTA 58.109 43.478 0.00 0.00 0.00 1.90
5149 5704 4.901849 TGGGATGAAGGGAGTAGACATTAG 59.098 45.833 0.00 0.00 0.00 1.73
5150 5705 4.284746 GGGATGAAGGGAGTAGACATTAGG 59.715 50.000 0.00 0.00 0.00 2.69
5151 5706 5.148502 GGATGAAGGGAGTAGACATTAGGA 58.851 45.833 0.00 0.00 0.00 2.94
5152 5707 5.011227 GGATGAAGGGAGTAGACATTAGGAC 59.989 48.000 0.00 0.00 0.00 3.85
5153 5708 5.208294 TGAAGGGAGTAGACATTAGGACT 57.792 43.478 0.00 0.00 0.00 3.85
5154 5709 5.590818 TGAAGGGAGTAGACATTAGGACTT 58.409 41.667 0.00 0.00 0.00 3.01
5155 5710 5.657302 TGAAGGGAGTAGACATTAGGACTTC 59.343 44.000 0.00 0.00 33.24 3.01
5156 5711 5.208294 AGGGAGTAGACATTAGGACTTCA 57.792 43.478 0.00 0.00 0.00 3.02
5157 5712 4.957327 AGGGAGTAGACATTAGGACTTCAC 59.043 45.833 0.00 0.00 0.00 3.18
5158 5713 4.957327 GGGAGTAGACATTAGGACTTCACT 59.043 45.833 0.00 0.00 0.00 3.41
5159 5714 5.422650 GGGAGTAGACATTAGGACTTCACTT 59.577 44.000 0.00 0.00 0.00 3.16
5160 5715 6.334202 GGAGTAGACATTAGGACTTCACTTG 58.666 44.000 0.00 0.00 0.00 3.16
5161 5716 6.287589 AGTAGACATTAGGACTTCACTTGG 57.712 41.667 0.00 0.00 0.00 3.61
5162 5717 6.017192 AGTAGACATTAGGACTTCACTTGGA 58.983 40.000 0.00 0.00 0.00 3.53
5163 5718 6.670027 AGTAGACATTAGGACTTCACTTGGAT 59.330 38.462 0.00 0.00 0.00 3.41
5164 5719 5.983540 AGACATTAGGACTTCACTTGGATC 58.016 41.667 0.00 0.00 0.00 3.36
5165 5720 5.485353 AGACATTAGGACTTCACTTGGATCA 59.515 40.000 0.00 0.00 0.00 2.92
5166 5721 5.738909 ACATTAGGACTTCACTTGGATCAG 58.261 41.667 0.00 0.00 0.00 2.90
5167 5722 2.777832 AGGACTTCACTTGGATCAGC 57.222 50.000 0.00 0.00 0.00 4.26
5168 5723 1.066573 AGGACTTCACTTGGATCAGCG 60.067 52.381 0.00 0.00 0.00 5.18
5169 5724 1.066858 GGACTTCACTTGGATCAGCGA 60.067 52.381 0.00 0.00 0.00 4.93
5170 5725 1.996191 GACTTCACTTGGATCAGCGAC 59.004 52.381 0.00 0.00 0.00 5.19
5171 5726 1.338200 ACTTCACTTGGATCAGCGACC 60.338 52.381 0.00 0.00 0.00 4.79
5172 5727 0.036388 TTCACTTGGATCAGCGACCC 60.036 55.000 0.00 0.00 0.00 4.46
5173 5728 1.811266 CACTTGGATCAGCGACCCG 60.811 63.158 0.00 0.00 0.00 5.28
5174 5729 1.982395 ACTTGGATCAGCGACCCGA 60.982 57.895 0.00 0.00 0.00 5.14
5175 5730 1.519455 CTTGGATCAGCGACCCGAC 60.519 63.158 0.00 0.00 0.00 4.79
5176 5731 2.225791 CTTGGATCAGCGACCCGACA 62.226 60.000 0.00 0.00 0.00 4.35
5177 5732 1.822114 TTGGATCAGCGACCCGACAA 61.822 55.000 0.00 0.00 0.00 3.18
5178 5733 1.144057 GGATCAGCGACCCGACAAT 59.856 57.895 0.00 0.00 0.00 2.71
5179 5734 0.462047 GGATCAGCGACCCGACAATT 60.462 55.000 0.00 0.00 0.00 2.32
5180 5735 1.369625 GATCAGCGACCCGACAATTT 58.630 50.000 0.00 0.00 0.00 1.82
5181 5736 1.062587 GATCAGCGACCCGACAATTTG 59.937 52.381 0.00 0.00 0.00 2.32
5182 5737 1.154225 CAGCGACCCGACAATTTGC 60.154 57.895 0.00 0.00 0.00 3.68
5183 5738 1.599518 AGCGACCCGACAATTTGCA 60.600 52.632 0.00 0.00 0.00 4.08
5184 5739 1.169661 AGCGACCCGACAATTTGCAA 61.170 50.000 0.00 0.00 0.00 4.08
5185 5740 0.729140 GCGACCCGACAATTTGCAAG 60.729 55.000 0.00 0.00 0.00 4.01
5186 5741 0.729140 CGACCCGACAATTTGCAAGC 60.729 55.000 0.00 0.00 0.00 4.01
5187 5742 0.598065 GACCCGACAATTTGCAAGCT 59.402 50.000 0.00 0.00 0.00 3.74
5188 5743 1.000274 GACCCGACAATTTGCAAGCTT 60.000 47.619 0.00 0.00 0.00 3.74
5189 5744 1.269726 ACCCGACAATTTGCAAGCTTG 60.270 47.619 22.44 22.44 0.00 4.01
5190 5745 1.000385 CCCGACAATTTGCAAGCTTGA 60.000 47.619 30.39 9.86 0.00 3.02
5191 5746 2.053627 CCGACAATTTGCAAGCTTGAC 58.946 47.619 30.39 20.19 0.00 3.18
5192 5747 2.287788 CCGACAATTTGCAAGCTTGACT 60.288 45.455 30.39 7.61 0.00 3.41
5193 5748 2.975851 CGACAATTTGCAAGCTTGACTC 59.024 45.455 30.39 12.88 0.00 3.36
5194 5749 3.311966 GACAATTTGCAAGCTTGACTCC 58.688 45.455 30.39 12.51 0.00 3.85
5195 5750 2.961062 ACAATTTGCAAGCTTGACTCCT 59.039 40.909 30.39 7.76 0.00 3.69
5196 5751 3.243636 ACAATTTGCAAGCTTGACTCCTG 60.244 43.478 30.39 20.38 0.00 3.86
5197 5752 0.670162 TTTGCAAGCTTGACTCCTGC 59.330 50.000 30.39 14.01 0.00 4.85
5198 5753 0.179009 TTGCAAGCTTGACTCCTGCT 60.179 50.000 30.39 0.00 38.87 4.24
5199 5754 0.179009 TGCAAGCTTGACTCCTGCTT 60.179 50.000 30.39 0.00 46.38 3.91
5200 5755 0.520847 GCAAGCTTGACTCCTGCTTC 59.479 55.000 30.39 4.12 44.04 3.86
5201 5756 1.881498 GCAAGCTTGACTCCTGCTTCT 60.881 52.381 30.39 0.00 44.04 2.85
5202 5757 2.613977 GCAAGCTTGACTCCTGCTTCTA 60.614 50.000 30.39 0.00 44.04 2.10
5203 5758 2.999355 CAAGCTTGACTCCTGCTTCTAC 59.001 50.000 22.31 0.00 44.04 2.59
5204 5759 2.251818 AGCTTGACTCCTGCTTCTACA 58.748 47.619 0.00 0.00 32.61 2.74
5205 5760 2.634940 AGCTTGACTCCTGCTTCTACAA 59.365 45.455 0.00 0.00 32.61 2.41
5206 5761 2.739379 GCTTGACTCCTGCTTCTACAAC 59.261 50.000 0.00 0.00 0.00 3.32
5207 5762 2.724977 TGACTCCTGCTTCTACAACG 57.275 50.000 0.00 0.00 0.00 4.10
5208 5763 1.272490 TGACTCCTGCTTCTACAACGG 59.728 52.381 0.00 0.00 0.00 4.44
5209 5764 1.272769 GACTCCTGCTTCTACAACGGT 59.727 52.381 0.00 0.00 0.00 4.83
5210 5765 1.000955 ACTCCTGCTTCTACAACGGTG 59.999 52.381 0.00 0.00 0.00 4.94
5211 5766 1.272490 CTCCTGCTTCTACAACGGTGA 59.728 52.381 7.88 0.00 0.00 4.02
5212 5767 1.272490 TCCTGCTTCTACAACGGTGAG 59.728 52.381 7.88 0.00 0.00 3.51
5213 5768 1.000955 CCTGCTTCTACAACGGTGAGT 59.999 52.381 7.88 0.00 0.00 3.41
5214 5769 2.548067 CCTGCTTCTACAACGGTGAGTT 60.548 50.000 7.88 0.00 45.45 3.01
5226 5781 3.800826 GTGAGTTGGACACCCACTT 57.199 52.632 0.00 0.00 43.41 3.16
5227 5782 2.052782 GTGAGTTGGACACCCACTTT 57.947 50.000 0.00 0.00 43.41 2.66
5228 5783 3.202829 GTGAGTTGGACACCCACTTTA 57.797 47.619 0.00 0.00 43.41 1.85
5229 5784 3.547746 GTGAGTTGGACACCCACTTTAA 58.452 45.455 0.00 0.00 43.41 1.52
5230 5785 3.314357 GTGAGTTGGACACCCACTTTAAC 59.686 47.826 0.00 0.00 43.41 2.01
5231 5786 2.882761 GAGTTGGACACCCACTTTAACC 59.117 50.000 0.00 0.00 43.41 2.85
5232 5787 1.958579 GTTGGACACCCACTTTAACCC 59.041 52.381 0.00 0.00 43.41 4.11
5233 5788 1.525175 TGGACACCCACTTTAACCCT 58.475 50.000 0.00 0.00 37.58 4.34
5234 5789 1.422402 TGGACACCCACTTTAACCCTC 59.578 52.381 0.00 0.00 37.58 4.30
5235 5790 1.422402 GGACACCCACTTTAACCCTCA 59.578 52.381 0.00 0.00 0.00 3.86
5236 5791 2.041216 GGACACCCACTTTAACCCTCAT 59.959 50.000 0.00 0.00 0.00 2.90
5237 5792 3.081804 GACACCCACTTTAACCCTCATG 58.918 50.000 0.00 0.00 0.00 3.07
5238 5793 1.818674 CACCCACTTTAACCCTCATGC 59.181 52.381 0.00 0.00 0.00 4.06
5239 5794 1.272480 ACCCACTTTAACCCTCATGCC 60.272 52.381 0.00 0.00 0.00 4.40
5240 5795 1.474330 CCACTTTAACCCTCATGCCC 58.526 55.000 0.00 0.00 0.00 5.36
5241 5796 1.005924 CCACTTTAACCCTCATGCCCT 59.994 52.381 0.00 0.00 0.00 5.19
5242 5797 2.369394 CACTTTAACCCTCATGCCCTC 58.631 52.381 0.00 0.00 0.00 4.30
5243 5798 1.285078 ACTTTAACCCTCATGCCCTCC 59.715 52.381 0.00 0.00 0.00 4.30
5244 5799 1.284785 CTTTAACCCTCATGCCCTCCA 59.715 52.381 0.00 0.00 0.00 3.86
5245 5800 1.607225 TTAACCCTCATGCCCTCCAT 58.393 50.000 0.00 0.00 33.39 3.41
5252 5807 3.202548 CATGCCCTCCATGCTCTTT 57.797 52.632 0.00 0.00 44.34 2.52
5253 5808 1.030457 CATGCCCTCCATGCTCTTTC 58.970 55.000 0.00 0.00 44.34 2.62
5254 5809 0.465097 ATGCCCTCCATGCTCTTTCG 60.465 55.000 0.00 0.00 31.48 3.46
5255 5810 2.476320 GCCCTCCATGCTCTTTCGC 61.476 63.158 0.00 0.00 0.00 4.70
5256 5811 1.821332 CCCTCCATGCTCTTTCGCC 60.821 63.158 0.00 0.00 0.00 5.54
5257 5812 1.821332 CCTCCATGCTCTTTCGCCC 60.821 63.158 0.00 0.00 0.00 6.13
5258 5813 1.222936 CTCCATGCTCTTTCGCCCT 59.777 57.895 0.00 0.00 0.00 5.19
5259 5814 0.813210 CTCCATGCTCTTTCGCCCTC 60.813 60.000 0.00 0.00 0.00 4.30
5260 5815 2.176273 CCATGCTCTTTCGCCCTCG 61.176 63.158 0.00 0.00 0.00 4.63
5261 5816 2.512515 ATGCTCTTTCGCCCTCGC 60.513 61.111 0.00 0.00 35.26 5.03
5262 5817 3.023949 ATGCTCTTTCGCCCTCGCT 62.024 57.895 0.00 0.00 35.26 4.93
5263 5818 2.888051 GCTCTTTCGCCCTCGCTC 60.888 66.667 0.00 0.00 35.26 5.03
5264 5819 2.888863 CTCTTTCGCCCTCGCTCT 59.111 61.111 0.00 0.00 35.26 4.09
5265 5820 1.226831 CTCTTTCGCCCTCGCTCTC 60.227 63.158 0.00 0.00 35.26 3.20
5266 5821 2.202810 CTTTCGCCCTCGCTCTCC 60.203 66.667 0.00 0.00 35.26 3.71
5267 5822 2.994995 TTTCGCCCTCGCTCTCCA 60.995 61.111 0.00 0.00 35.26 3.86
5268 5823 2.897641 CTTTCGCCCTCGCTCTCCAG 62.898 65.000 0.00 0.00 35.26 3.86
5272 5827 3.160047 CCCTCGCTCTCCAGCCAT 61.160 66.667 0.00 0.00 43.56 4.40
5273 5828 2.739996 CCCTCGCTCTCCAGCCATT 61.740 63.158 0.00 0.00 43.56 3.16
5274 5829 1.523258 CCTCGCTCTCCAGCCATTG 60.523 63.158 0.00 0.00 43.56 2.82
5275 5830 2.124983 TCGCTCTCCAGCCATTGC 60.125 61.111 0.00 0.00 43.56 3.56
5285 5840 4.249513 GCCATTGCTCCCTTCTCC 57.750 61.111 0.00 0.00 33.53 3.71
5286 5841 1.611965 GCCATTGCTCCCTTCTCCT 59.388 57.895 0.00 0.00 33.53 3.69
5287 5842 0.465278 GCCATTGCTCCCTTCTCCTC 60.465 60.000 0.00 0.00 33.53 3.71
5288 5843 0.179062 CCATTGCTCCCTTCTCCTCG 60.179 60.000 0.00 0.00 0.00 4.63
5289 5844 0.813210 CATTGCTCCCTTCTCCTCGC 60.813 60.000 0.00 0.00 0.00 5.03
5290 5845 1.977293 ATTGCTCCCTTCTCCTCGCC 61.977 60.000 0.00 0.00 0.00 5.54
5291 5846 2.762043 GCTCCCTTCTCCTCGCCT 60.762 66.667 0.00 0.00 0.00 5.52
5292 5847 3.087666 GCTCCCTTCTCCTCGCCTG 62.088 68.421 0.00 0.00 0.00 4.85
5293 5848 1.684049 CTCCCTTCTCCTCGCCTGT 60.684 63.158 0.00 0.00 0.00 4.00
5294 5849 1.954362 CTCCCTTCTCCTCGCCTGTG 61.954 65.000 0.00 0.00 0.00 3.66
5295 5850 1.984570 CCCTTCTCCTCGCCTGTGA 60.985 63.158 0.00 0.00 0.00 3.58
5296 5851 1.216710 CCTTCTCCTCGCCTGTGAC 59.783 63.158 0.00 0.00 0.00 3.67
5297 5852 1.536073 CCTTCTCCTCGCCTGTGACA 61.536 60.000 0.00 0.00 0.00 3.58
5298 5853 0.108898 CTTCTCCTCGCCTGTGACAG 60.109 60.000 5.42 5.42 0.00 3.51
5299 5854 0.827925 TTCTCCTCGCCTGTGACAGT 60.828 55.000 12.15 0.00 0.00 3.55
5300 5855 1.080230 CTCCTCGCCTGTGACAGTG 60.080 63.158 12.15 3.80 0.00 3.66
5301 5856 2.047844 CCTCGCCTGTGACAGTGG 60.048 66.667 12.15 2.84 0.00 4.00
5302 5857 2.047844 CTCGCCTGTGACAGTGGG 60.048 66.667 12.15 11.11 0.00 4.61
5303 5858 4.314440 TCGCCTGTGACAGTGGGC 62.314 66.667 12.15 8.05 41.02 5.36
5305 5860 3.958860 GCCTGTGACAGTGGGCCT 61.959 66.667 12.15 0.00 38.77 5.19
5306 5861 2.348998 CCTGTGACAGTGGGCCTC 59.651 66.667 12.15 0.00 0.00 4.70
5307 5862 2.047844 CTGTGACAGTGGGCCTCG 60.048 66.667 4.53 0.24 0.00 4.63
5308 5863 2.523168 TGTGACAGTGGGCCTCGA 60.523 61.111 4.53 0.00 0.00 4.04
5309 5864 2.262915 GTGACAGTGGGCCTCGAG 59.737 66.667 5.13 5.13 0.00 4.04
5310 5865 2.997315 TGACAGTGGGCCTCGAGG 60.997 66.667 27.83 27.83 38.53 4.63
5311 5866 2.997897 GACAGTGGGCCTCGAGGT 60.998 66.667 31.43 10.92 37.57 3.85
5312 5867 3.302347 GACAGTGGGCCTCGAGGTG 62.302 68.421 31.43 22.92 37.57 4.00
5313 5868 4.767255 CAGTGGGCCTCGAGGTGC 62.767 72.222 31.43 18.41 37.57 5.01
5327 5882 2.258591 GTGCGAGAGAACCAGCGA 59.741 61.111 0.00 0.00 31.64 4.93
5328 5883 1.372997 GTGCGAGAGAACCAGCGAA 60.373 57.895 0.00 0.00 31.64 4.70
5329 5884 0.944311 GTGCGAGAGAACCAGCGAAA 60.944 55.000 0.00 0.00 31.64 3.46
5330 5885 0.249699 TGCGAGAGAACCAGCGAAAA 60.250 50.000 0.00 0.00 0.00 2.29
5331 5886 0.440371 GCGAGAGAACCAGCGAAAAG 59.560 55.000 0.00 0.00 0.00 2.27
5332 5887 1.784525 CGAGAGAACCAGCGAAAAGT 58.215 50.000 0.00 0.00 0.00 2.66
5333 5888 2.135933 CGAGAGAACCAGCGAAAAGTT 58.864 47.619 0.00 0.00 0.00 2.66
5334 5889 2.096713 CGAGAGAACCAGCGAAAAGTTG 60.097 50.000 0.00 0.00 0.00 3.16
5335 5890 1.604278 AGAGAACCAGCGAAAAGTTGC 59.396 47.619 0.00 0.00 0.00 4.17
5336 5891 1.604278 GAGAACCAGCGAAAAGTTGCT 59.396 47.619 0.00 0.00 43.58 3.91
5337 5892 1.604278 AGAACCAGCGAAAAGTTGCTC 59.396 47.619 0.00 0.00 40.03 4.26
5338 5893 0.307760 AACCAGCGAAAAGTTGCTCG 59.692 50.000 3.79 3.79 40.03 5.03
5339 5894 0.531974 ACCAGCGAAAAGTTGCTCGA 60.532 50.000 10.87 0.00 40.03 4.04
5340 5895 0.110644 CCAGCGAAAAGTTGCTCGAC 60.111 55.000 10.87 3.84 40.03 4.20
5341 5896 0.110644 CAGCGAAAAGTTGCTCGACC 60.111 55.000 10.87 0.00 40.03 4.79
5342 5897 0.249911 AGCGAAAAGTTGCTCGACCT 60.250 50.000 10.87 0.00 36.53 3.85
5343 5898 0.586802 GCGAAAAGTTGCTCGACCTT 59.413 50.000 10.87 0.00 37.23 3.50
5344 5899 1.398578 GCGAAAAGTTGCTCGACCTTC 60.399 52.381 10.87 0.00 37.23 3.46
5345 5900 1.136611 CGAAAAGTTGCTCGACCTTCG 60.137 52.381 2.23 7.34 42.10 3.79
5346 5901 0.586802 AAAAGTTGCTCGACCTTCGC 59.413 50.000 0.00 0.00 40.21 4.70
5347 5902 0.531974 AAAGTTGCTCGACCTTCGCA 60.532 50.000 0.00 0.00 40.21 5.10
5348 5903 0.320771 AAGTTGCTCGACCTTCGCAT 60.321 50.000 0.00 0.00 40.21 4.73
5349 5904 0.737715 AGTTGCTCGACCTTCGCATC 60.738 55.000 0.00 0.00 40.21 3.91
5350 5905 1.447838 TTGCTCGACCTTCGCATCC 60.448 57.895 0.00 0.00 40.21 3.51
5351 5906 2.586357 GCTCGACCTTCGCATCCC 60.586 66.667 0.00 0.00 40.21 3.85
5352 5907 3.082579 GCTCGACCTTCGCATCCCT 62.083 63.158 0.00 0.00 40.21 4.20
5353 5908 1.066587 CTCGACCTTCGCATCCCTC 59.933 63.158 0.00 0.00 40.21 4.30
5354 5909 1.379977 TCGACCTTCGCATCCCTCT 60.380 57.895 0.00 0.00 40.21 3.69
5355 5910 0.970937 TCGACCTTCGCATCCCTCTT 60.971 55.000 0.00 0.00 40.21 2.85
5356 5911 0.528684 CGACCTTCGCATCCCTCTTC 60.529 60.000 0.00 0.00 31.14 2.87
5357 5912 0.528684 GACCTTCGCATCCCTCTTCG 60.529 60.000 0.00 0.00 0.00 3.79
5358 5913 0.970937 ACCTTCGCATCCCTCTTCGA 60.971 55.000 0.00 0.00 0.00 3.71
5359 5914 0.249238 CCTTCGCATCCCTCTTCGAG 60.249 60.000 0.00 0.00 32.31 4.04
5367 5922 2.962569 CCTCTTCGAGGCGACACA 59.037 61.111 0.00 0.00 43.29 3.72
5368 5923 1.444553 CCTCTTCGAGGCGACACAC 60.445 63.158 0.00 0.00 43.29 3.82
5369 5924 1.797933 CTCTTCGAGGCGACACACG 60.798 63.158 0.00 0.00 45.66 4.49
5370 5925 2.183858 CTCTTCGAGGCGACACACGA 62.184 60.000 0.00 0.00 45.77 4.35
5371 5926 1.797933 CTTCGAGGCGACACACGAG 60.798 63.158 0.00 0.00 45.77 4.18
5372 5927 2.183858 CTTCGAGGCGACACACGAGA 62.184 60.000 0.00 0.00 45.77 4.04
5373 5928 2.183858 TTCGAGGCGACACACGAGAG 62.184 60.000 0.00 0.00 45.77 3.20
5374 5929 2.179517 GAGGCGACACACGAGAGG 59.820 66.667 0.00 0.00 45.77 3.69
5375 5930 3.343788 GAGGCGACACACGAGAGGG 62.344 68.421 0.00 0.00 45.77 4.30
5376 5931 4.436998 GGCGACACACGAGAGGGG 62.437 72.222 0.00 0.00 45.77 4.79
5398 5953 2.000164 GGGACCCTTTCCTCCTTCC 59.000 63.158 2.09 0.00 45.09 3.46
5399 5954 1.572689 GGGACCCTTTCCTCCTTCCC 61.573 65.000 2.09 0.00 45.09 3.97
5400 5955 1.572689 GGACCCTTTCCTCCTTCCCC 61.573 65.000 0.00 0.00 41.95 4.81
5401 5956 0.550393 GACCCTTTCCTCCTTCCCCT 60.550 60.000 0.00 0.00 0.00 4.79
5402 5957 0.550393 ACCCTTTCCTCCTTCCCCTC 60.550 60.000 0.00 0.00 0.00 4.30
5403 5958 1.282653 CCCTTTCCTCCTTCCCCTCC 61.283 65.000 0.00 0.00 0.00 4.30
5404 5959 1.282653 CCTTTCCTCCTTCCCCTCCC 61.283 65.000 0.00 0.00 0.00 4.30
5405 5960 1.230182 TTTCCTCCTTCCCCTCCCC 60.230 63.158 0.00 0.00 0.00 4.81
5406 5961 2.800523 TTTCCTCCTTCCCCTCCCCC 62.801 65.000 0.00 0.00 0.00 5.40
5407 5962 3.711782 CCTCCTTCCCCTCCCCCT 61.712 72.222 0.00 0.00 0.00 4.79
5408 5963 2.040359 CTCCTTCCCCTCCCCCTC 60.040 72.222 0.00 0.00 0.00 4.30
5409 5964 4.089757 TCCTTCCCCTCCCCCTCG 62.090 72.222 0.00 0.00 0.00 4.63
5423 5978 4.519437 CTCGCCGCTGCCAGATGA 62.519 66.667 0.00 0.00 0.00 2.92
5424 5979 4.081185 TCGCCGCTGCCAGATGAA 62.081 61.111 0.00 0.00 0.00 2.57
5425 5980 3.570638 CGCCGCTGCCAGATGAAG 61.571 66.667 0.00 0.00 0.00 3.02
5426 5981 3.885521 GCCGCTGCCAGATGAAGC 61.886 66.667 0.00 0.00 0.00 3.86
5427 5982 3.207669 CCGCTGCCAGATGAAGCC 61.208 66.667 0.00 0.00 33.24 4.35
5428 5983 3.207669 CGCTGCCAGATGAAGCCC 61.208 66.667 0.00 0.00 33.24 5.19
5429 5984 3.207669 GCTGCCAGATGAAGCCCG 61.208 66.667 0.00 0.00 0.00 6.13
5430 5985 2.515523 CTGCCAGATGAAGCCCGG 60.516 66.667 0.00 0.00 0.00 5.73
5431 5986 4.113815 TGCCAGATGAAGCCCGGG 62.114 66.667 19.09 19.09 0.00 5.73
5433 5988 4.113815 CCAGATGAAGCCCGGGCA 62.114 66.667 45.13 27.61 44.88 5.36
5434 5989 2.515523 CAGATGAAGCCCGGGCAG 60.516 66.667 45.13 21.75 44.88 4.85
5435 5990 3.011517 AGATGAAGCCCGGGCAGT 61.012 61.111 45.13 33.20 44.88 4.40
5436 5991 2.825836 GATGAAGCCCGGGCAGTG 60.826 66.667 45.13 9.62 44.88 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 9.495382 AGAAATTCCTAATTACTCTAGTGACCT 57.505 33.333 0.00 0.00 0.00 3.85
16 17 9.952188 GCCTCATTTGTAGAAATTCCTAATTAC 57.048 33.333 0.00 0.00 28.65 1.89
17 18 9.131791 GGCCTCATTTGTAGAAATTCCTAATTA 57.868 33.333 0.00 0.00 28.65 1.40
18 19 7.619302 TGGCCTCATTTGTAGAAATTCCTAATT 59.381 33.333 3.32 0.00 28.65 1.40
19 20 7.125391 TGGCCTCATTTGTAGAAATTCCTAAT 58.875 34.615 3.32 0.00 28.65 1.73
20 21 6.489603 TGGCCTCATTTGTAGAAATTCCTAA 58.510 36.000 3.32 0.00 28.65 2.69
21 22 6.073447 TGGCCTCATTTGTAGAAATTCCTA 57.927 37.500 3.32 0.00 28.65 2.94
22 23 4.934356 TGGCCTCATTTGTAGAAATTCCT 58.066 39.130 3.32 0.00 28.65 3.36
23 24 5.659440 TTGGCCTCATTTGTAGAAATTCC 57.341 39.130 3.32 0.00 28.65 3.01
24 25 6.591448 CCTTTTGGCCTCATTTGTAGAAATTC 59.409 38.462 3.32 0.00 28.65 2.17
25 26 6.269769 TCCTTTTGGCCTCATTTGTAGAAATT 59.730 34.615 3.32 0.00 40.12 1.82
26 27 5.779771 TCCTTTTGGCCTCATTTGTAGAAAT 59.220 36.000 3.32 0.00 40.12 2.17
27 28 5.144100 TCCTTTTGGCCTCATTTGTAGAAA 58.856 37.500 3.32 0.00 40.12 2.52
28 29 4.735369 TCCTTTTGGCCTCATTTGTAGAA 58.265 39.130 3.32 0.00 40.12 2.10
29 30 4.380843 TCCTTTTGGCCTCATTTGTAGA 57.619 40.909 3.32 0.00 40.12 2.59
30 31 5.467035 TTTCCTTTTGGCCTCATTTGTAG 57.533 39.130 3.32 0.00 40.12 2.74
31 32 5.878406 TTTTCCTTTTGGCCTCATTTGTA 57.122 34.783 3.32 0.00 40.12 2.41
32 33 4.769345 TTTTCCTTTTGGCCTCATTTGT 57.231 36.364 3.32 0.00 40.12 2.83
53 54 8.533569 TTCTACTGTTCTGGAAAGGAATTTTT 57.466 30.769 0.00 0.00 0.00 1.94
54 55 8.414003 GTTTCTACTGTTCTGGAAAGGAATTTT 58.586 33.333 0.00 0.00 0.00 1.82
55 56 7.780271 AGTTTCTACTGTTCTGGAAAGGAATTT 59.220 33.333 0.00 0.00 31.99 1.82
56 57 7.229506 CAGTTTCTACTGTTCTGGAAAGGAATT 59.770 37.037 0.00 0.00 45.46 2.17
57 58 6.712547 CAGTTTCTACTGTTCTGGAAAGGAAT 59.287 38.462 0.00 0.00 45.46 3.01
58 59 6.055588 CAGTTTCTACTGTTCTGGAAAGGAA 58.944 40.000 0.00 0.00 45.46 3.36
59 60 5.611374 CAGTTTCTACTGTTCTGGAAAGGA 58.389 41.667 0.00 0.00 45.46 3.36
60 61 5.931441 CAGTTTCTACTGTTCTGGAAAGG 57.069 43.478 0.00 0.00 45.46 3.11
99 100 7.445707 AGTTTCTACTGTTCTGGAAAGGATTTC 59.554 37.037 0.00 0.00 43.03 2.17
100 101 7.229506 CAGTTTCTACTGTTCTGGAAAGGATTT 59.770 37.037 0.00 0.00 45.46 2.17
101 102 6.712547 CAGTTTCTACTGTTCTGGAAAGGATT 59.287 38.462 0.00 0.00 45.46 3.01
102 103 6.234177 CAGTTTCTACTGTTCTGGAAAGGAT 58.766 40.000 0.00 0.00 45.46 3.24
103 104 5.611374 CAGTTTCTACTGTTCTGGAAAGGA 58.389 41.667 0.00 0.00 45.46 3.36
104 105 5.931441 CAGTTTCTACTGTTCTGGAAAGG 57.069 43.478 0.00 0.00 45.46 3.11
143 144 7.445707 AGTTTCTACTGTTCTGGAAAGGATTTC 59.554 37.037 0.00 0.00 43.03 2.17
144 145 7.229506 CAGTTTCTACTGTTCTGGAAAGGATTT 59.770 37.037 0.00 0.00 45.46 2.17
145 146 6.712547 CAGTTTCTACTGTTCTGGAAAGGATT 59.287 38.462 0.00 0.00 45.46 3.01
146 147 6.234177 CAGTTTCTACTGTTCTGGAAAGGAT 58.766 40.000 0.00 0.00 45.46 3.24
147 148 5.611374 CAGTTTCTACTGTTCTGGAAAGGA 58.389 41.667 0.00 0.00 45.46 3.36
148 149 5.931441 CAGTTTCTACTGTTCTGGAAAGG 57.069 43.478 0.00 0.00 45.46 3.11
188 189 6.490381 GGTTTCTACTGTTCTGGAAAGGATTT 59.510 38.462 0.00 0.00 43.98 2.17
189 190 6.004574 GGTTTCTACTGTTCTGGAAAGGATT 58.995 40.000 0.00 0.00 0.00 3.01
190 191 5.561679 GGTTTCTACTGTTCTGGAAAGGAT 58.438 41.667 0.00 0.00 0.00 3.24
191 192 4.502604 CGGTTTCTACTGTTCTGGAAAGGA 60.503 45.833 0.00 0.00 0.00 3.36
192 193 3.746492 CGGTTTCTACTGTTCTGGAAAGG 59.254 47.826 0.00 0.00 0.00 3.11
193 194 4.628074 TCGGTTTCTACTGTTCTGGAAAG 58.372 43.478 0.00 0.00 32.23 2.62
194 195 4.675976 TCGGTTTCTACTGTTCTGGAAA 57.324 40.909 0.00 0.00 32.23 3.13
195 196 4.502604 CCTTCGGTTTCTACTGTTCTGGAA 60.503 45.833 0.00 0.00 32.23 3.53
196 197 3.006537 CCTTCGGTTTCTACTGTTCTGGA 59.993 47.826 0.00 0.00 32.23 3.86
197 198 3.006537 TCCTTCGGTTTCTACTGTTCTGG 59.993 47.826 0.00 0.00 32.23 3.86
198 199 4.022242 TCTCCTTCGGTTTCTACTGTTCTG 60.022 45.833 0.00 0.00 32.23 3.02
199 200 4.150359 TCTCCTTCGGTTTCTACTGTTCT 58.850 43.478 0.00 0.00 32.23 3.01
200 201 4.516365 TCTCCTTCGGTTTCTACTGTTC 57.484 45.455 0.00 0.00 32.23 3.18
201 202 6.600882 TTATCTCCTTCGGTTTCTACTGTT 57.399 37.500 0.00 0.00 32.23 3.16
202 203 6.600882 TTTATCTCCTTCGGTTTCTACTGT 57.399 37.500 0.00 0.00 32.23 3.55
203 204 7.900782 TTTTTATCTCCTTCGGTTTCTACTG 57.099 36.000 0.00 0.00 0.00 2.74
231 232 7.445707 AGTTTCTACTGTTCTGGAAAGGATTTC 59.554 37.037 0.00 0.00 43.03 2.17
232 233 7.229506 CAGTTTCTACTGTTCTGGAAAGGATTT 59.770 37.037 0.00 0.00 45.46 2.17
233 234 6.712547 CAGTTTCTACTGTTCTGGAAAGGATT 59.287 38.462 0.00 0.00 45.46 3.01
234 235 6.234177 CAGTTTCTACTGTTCTGGAAAGGAT 58.766 40.000 0.00 0.00 45.46 3.24
235 236 5.611374 CAGTTTCTACTGTTCTGGAAAGGA 58.389 41.667 0.00 0.00 45.46 3.36
236 237 5.931441 CAGTTTCTACTGTTCTGGAAAGG 57.069 43.478 0.00 0.00 45.46 3.11
272 273 9.750125 GTTTCTACTGTTCTGGAAATGATTTTT 57.250 29.630 0.00 0.00 31.74 1.94
273 274 9.136323 AGTTTCTACTGTTCTGGAAATGATTTT 57.864 29.630 0.00 0.00 31.99 1.82
274 275 8.571336 CAGTTTCTACTGTTCTGGAAATGATTT 58.429 33.333 0.00 0.00 45.46 2.17
275 276 8.103948 CAGTTTCTACTGTTCTGGAAATGATT 57.896 34.615 0.00 0.00 45.46 2.57
276 277 7.678947 CAGTTTCTACTGTTCTGGAAATGAT 57.321 36.000 0.00 0.00 45.46 2.45
311 312 6.183360 CCCACTCCTGTCAATTTCTTTCTTTT 60.183 38.462 0.00 0.00 0.00 2.27
415 416 8.796475 CCAATATCAAAGGTAATCCCAATAGTG 58.204 37.037 0.00 0.00 34.66 2.74
445 446 0.804989 GTGGCTCGGTCAGGAATTTG 59.195 55.000 0.00 0.00 0.00 2.32
467 468 8.477256 AGTTTCTGGTGATTGAATGAAAGAAAA 58.523 29.630 5.69 0.00 35.02 2.29
469 470 7.285172 TCAGTTTCTGGTGATTGAATGAAAGAA 59.715 33.333 0.00 0.00 31.51 2.52
471 472 6.973843 TCAGTTTCTGGTGATTGAATGAAAG 58.026 36.000 0.00 0.00 31.51 2.62
485 486 4.567959 CCTTGCTTTTGTTTCAGTTTCTGG 59.432 41.667 0.00 0.00 31.51 3.86
493 494 2.828520 TGGTCACCTTGCTTTTGTTTCA 59.171 40.909 0.00 0.00 0.00 2.69
548 767 1.734117 GCCAAAACATGCCGCTGAC 60.734 57.895 0.00 0.00 0.00 3.51
596 816 1.271762 ACATGTCTGCAACTCAGCCAT 60.272 47.619 0.00 0.00 41.63 4.40
658 878 9.705290 TTGCTCTAATTAATTTGGAAAAACTCC 57.295 29.630 5.91 0.00 45.64 3.85
731 953 4.337274 TGTCTTCTGACTTCACGACACTAA 59.663 41.667 0.00 0.00 43.29 2.24
732 954 3.881089 TGTCTTCTGACTTCACGACACTA 59.119 43.478 0.00 0.00 43.29 2.74
755 977 1.455786 CAGTGGTAGTTCAAAGACGCG 59.544 52.381 3.53 3.53 0.00 6.01
789 1011 3.565307 TGAGCCAGTGATGGTTCTTTTT 58.435 40.909 11.64 0.00 39.51 1.94
790 1012 3.152341 CTGAGCCAGTGATGGTTCTTTT 58.848 45.455 11.64 0.00 39.51 2.27
791 1013 2.107204 ACTGAGCCAGTGATGGTTCTTT 59.893 45.455 11.64 0.00 43.63 2.52
792 1014 1.701847 ACTGAGCCAGTGATGGTTCTT 59.298 47.619 11.64 0.00 43.63 2.52
793 1015 1.356124 ACTGAGCCAGTGATGGTTCT 58.644 50.000 11.64 0.00 43.63 3.01
794 1016 3.944476 ACTGAGCCAGTGATGGTTC 57.056 52.632 7.00 4.36 43.63 3.62
802 1024 3.689347 TCAATATTTGCACTGAGCCAGT 58.311 40.909 2.38 2.38 46.51 4.00
806 1028 8.344831 TGTAATACATCAATATTTGCACTGAGC 58.655 33.333 0.00 0.00 45.96 4.26
823 1045 9.733556 TTACAGAGAACCACATTTGTAATACAT 57.266 29.630 0.00 0.00 0.00 2.29
828 1050 7.865385 GCAAATTACAGAGAACCACATTTGTAA 59.135 33.333 0.00 0.00 36.02 2.41
870 1099 2.572290 CCTTCCCTTTATAACGGCTGG 58.428 52.381 2.41 1.18 0.00 4.85
954 1186 2.758423 GGTTTTGGGTTCTGTGTGAGTT 59.242 45.455 0.00 0.00 0.00 3.01
1011 1243 1.048601 GGGTGCGGAGGAGAATATCA 58.951 55.000 0.00 0.00 0.00 2.15
1073 1305 3.035576 GCTGTAAAACGGAGGCGGC 62.036 63.158 0.00 0.00 0.00 6.53
1155 1387 1.881903 CGCTTCCTGACCTGAGCTGA 61.882 60.000 0.00 0.00 33.09 4.26
1200 1432 4.361971 TCCGAGACCCTCCGCTGT 62.362 66.667 0.00 0.00 0.00 4.40
1269 1501 1.617947 CCCCTTGTCCTTCCTCCTCG 61.618 65.000 0.00 0.00 0.00 4.63
1305 1537 1.377202 GCCACCAATCTTCTCCGCA 60.377 57.895 0.00 0.00 0.00 5.69
1383 1639 8.455903 ACAATTCTGAAAAGATTTGAGAGTGA 57.544 30.769 14.13 0.00 34.86 3.41
1446 1702 6.148480 CACCCAACATTTCTTGTTTCAAACAA 59.852 34.615 14.96 14.96 46.51 2.83
1456 1712 5.411361 TCGTAGAATCACCCAACATTTCTTG 59.589 40.000 0.00 0.00 0.00 3.02
1567 1825 8.954350 ACGCTATTAGAAGTTTAGAACTCTGTA 58.046 33.333 0.00 0.00 41.91 2.74
1735 1993 9.673454 TGTAGCAGAACAGTATTATAACGTATG 57.327 33.333 0.00 0.00 0.00 2.39
1787 2045 9.601217 AAACAGATGACGCTATTAGAAGTTTAT 57.399 29.630 0.00 0.00 0.00 1.40
2106 2364 6.385649 ACATAAAACCGAGTGACACAAAAT 57.614 33.333 8.59 0.00 0.00 1.82
2115 2373 5.478001 CGTCGAATTACATAAAACCGAGTG 58.522 41.667 0.00 0.00 0.00 3.51
2173 2431 6.742718 CACGAAATAGAACCATTAGTTGCTTG 59.257 38.462 0.00 0.00 39.40 4.01
2856 3116 5.118050 TGTTACGTTGCTCTTGAGTTATTCG 59.882 40.000 0.00 0.00 0.00 3.34
2911 3178 4.394300 AGATATGTGCAAACTTGAGCTGAC 59.606 41.667 0.00 0.00 0.00 3.51
3020 3287 3.555586 GCCGAGTAGAAAAACCAGGTGTA 60.556 47.826 0.00 0.00 0.00 2.90
3089 3356 8.473219 TCAATATCTCTTCTGAATCCCATATCG 58.527 37.037 0.00 0.00 0.00 2.92
3307 3579 2.826725 CTCCTCGTCACCCTCTTTAACT 59.173 50.000 0.00 0.00 0.00 2.24
3434 3722 3.492383 CAGATCAAGTGGTGCGATCATAC 59.508 47.826 0.00 0.00 38.40 2.39
3599 3910 9.582648 TGCAGTAGTACAGAATATAATCACCTA 57.417 33.333 2.52 0.00 0.00 3.08
3879 4361 6.279513 TCCCAACCTTGTAAATGCAAATAG 57.720 37.500 0.00 0.00 0.00 1.73
3943 4425 0.537371 CCTTGCCTTTCCGTCCTGTT 60.537 55.000 0.00 0.00 0.00 3.16
4136 4618 3.994392 GGCTGATCAAACTACAGAACGAA 59.006 43.478 0.00 0.00 34.07 3.85
4178 4660 9.967346 TTTAATGCACAGCTAATACTAGTCTAG 57.033 33.333 0.00 5.27 0.00 2.43
4211 4693 6.438763 CACCTTTCACCTGTCATAAGAAAAC 58.561 40.000 0.00 0.00 0.00 2.43
4424 4938 0.039165 CGAAAGCCAGGAACTTTGCC 60.039 55.000 0.00 0.00 37.47 4.52
4474 4990 2.031120 GCTCTAGCACATGAGTCCTCT 58.969 52.381 0.00 0.00 41.59 3.69
4475 4991 1.268999 CGCTCTAGCACATGAGTCCTC 60.269 57.143 0.00 0.00 42.21 3.71
4661 5214 4.905429 TGGCATAACAGCACTAAAGAAGA 58.095 39.130 0.00 0.00 35.83 2.87
4662 5215 5.627499 TTGGCATAACAGCACTAAAGAAG 57.373 39.130 0.00 0.00 35.83 2.85
4676 5229 3.080300 ACCGGTCAAGATTTGGCATAA 57.920 42.857 0.00 0.00 36.88 1.90
4682 5235 4.332819 GGATAGTGAACCGGTCAAGATTTG 59.667 45.833 8.04 0.00 38.23 2.32
4721 5275 2.806945 TGAATCAATGGGGTCTGTCC 57.193 50.000 0.00 0.00 0.00 4.02
4866 5421 9.544314 GTAGAAATACTACGTAGCTGATACATG 57.456 37.037 22.40 0.00 41.36 3.21
4882 5437 7.926555 CGATTCCATACAACAGGTAGAAATACT 59.073 37.037 0.00 0.00 34.92 2.12
4908 5463 2.456577 TCTGCCCATAAGAAAAAGCCC 58.543 47.619 0.00 0.00 0.00 5.19
5028 5583 9.279904 CGAACTAGTTGTCTTAGATTTGTCTAG 57.720 37.037 14.14 0.00 0.00 2.43
5029 5584 8.242053 CCGAACTAGTTGTCTTAGATTTGTCTA 58.758 37.037 14.14 0.00 0.00 2.59
5030 5585 7.091443 CCGAACTAGTTGTCTTAGATTTGTCT 58.909 38.462 14.14 0.00 0.00 3.41
5055 5610 3.397849 AGTTTTGTACTTCCTCCGTCC 57.602 47.619 0.00 0.00 31.29 4.79
5075 5630 5.954757 TCCAAACAGGGTGTAAGGAAATAA 58.045 37.500 0.00 0.00 38.24 1.40
5107 5662 8.783093 TCATCCCATAATATAAGAGCGTTTTTG 58.217 33.333 0.00 0.00 0.00 2.44
5113 5668 6.051717 CCCTTCATCCCATAATATAAGAGCG 58.948 44.000 0.00 0.00 0.00 5.03
5114 5669 7.092668 ACTCCCTTCATCCCATAATATAAGAGC 60.093 40.741 0.00 0.00 0.00 4.09
5115 5670 8.386012 ACTCCCTTCATCCCATAATATAAGAG 57.614 38.462 0.00 0.00 0.00 2.85
5116 5671 9.494055 CTACTCCCTTCATCCCATAATATAAGA 57.506 37.037 0.00 0.00 0.00 2.10
5117 5672 9.494055 TCTACTCCCTTCATCCCATAATATAAG 57.506 37.037 0.00 0.00 0.00 1.73
5118 5673 9.268282 GTCTACTCCCTTCATCCCATAATATAA 57.732 37.037 0.00 0.00 0.00 0.98
5119 5674 8.406643 TGTCTACTCCCTTCATCCCATAATATA 58.593 37.037 0.00 0.00 0.00 0.86
5120 5675 7.256399 TGTCTACTCCCTTCATCCCATAATAT 58.744 38.462 0.00 0.00 0.00 1.28
5121 5676 6.630131 TGTCTACTCCCTTCATCCCATAATA 58.370 40.000 0.00 0.00 0.00 0.98
5122 5677 5.476983 TGTCTACTCCCTTCATCCCATAAT 58.523 41.667 0.00 0.00 0.00 1.28
5123 5678 4.890988 TGTCTACTCCCTTCATCCCATAA 58.109 43.478 0.00 0.00 0.00 1.90
5124 5679 4.552883 TGTCTACTCCCTTCATCCCATA 57.447 45.455 0.00 0.00 0.00 2.74
5125 5680 3.421394 TGTCTACTCCCTTCATCCCAT 57.579 47.619 0.00 0.00 0.00 4.00
5126 5681 2.940514 TGTCTACTCCCTTCATCCCA 57.059 50.000 0.00 0.00 0.00 4.37
5127 5682 4.284746 CCTAATGTCTACTCCCTTCATCCC 59.715 50.000 0.00 0.00 0.00 3.85
5128 5683 5.011227 GTCCTAATGTCTACTCCCTTCATCC 59.989 48.000 0.00 0.00 0.00 3.51
5129 5684 5.836358 AGTCCTAATGTCTACTCCCTTCATC 59.164 44.000 0.00 0.00 0.00 2.92
5130 5685 5.782925 AGTCCTAATGTCTACTCCCTTCAT 58.217 41.667 0.00 0.00 0.00 2.57
5131 5686 5.208294 AGTCCTAATGTCTACTCCCTTCA 57.792 43.478 0.00 0.00 0.00 3.02
5132 5687 5.657302 TGAAGTCCTAATGTCTACTCCCTTC 59.343 44.000 0.00 0.00 0.00 3.46
5133 5688 5.422650 GTGAAGTCCTAATGTCTACTCCCTT 59.577 44.000 0.00 0.00 0.00 3.95
5134 5689 4.957327 GTGAAGTCCTAATGTCTACTCCCT 59.043 45.833 0.00 0.00 0.00 4.20
5135 5690 4.957327 AGTGAAGTCCTAATGTCTACTCCC 59.043 45.833 0.00 0.00 0.00 4.30
5136 5691 6.334202 CAAGTGAAGTCCTAATGTCTACTCC 58.666 44.000 0.00 0.00 0.00 3.85
5137 5692 6.153000 TCCAAGTGAAGTCCTAATGTCTACTC 59.847 42.308 0.00 0.00 0.00 2.59
5138 5693 6.017192 TCCAAGTGAAGTCCTAATGTCTACT 58.983 40.000 0.00 0.00 0.00 2.57
5139 5694 6.282199 TCCAAGTGAAGTCCTAATGTCTAC 57.718 41.667 0.00 0.00 0.00 2.59
5140 5695 6.667848 TGATCCAAGTGAAGTCCTAATGTCTA 59.332 38.462 0.00 0.00 0.00 2.59
5141 5696 5.485353 TGATCCAAGTGAAGTCCTAATGTCT 59.515 40.000 0.00 0.00 0.00 3.41
5142 5697 5.734720 TGATCCAAGTGAAGTCCTAATGTC 58.265 41.667 0.00 0.00 0.00 3.06
5143 5698 5.738909 CTGATCCAAGTGAAGTCCTAATGT 58.261 41.667 0.00 0.00 0.00 2.71
5144 5699 4.574013 GCTGATCCAAGTGAAGTCCTAATG 59.426 45.833 0.00 0.00 0.00 1.90
5145 5700 4.681781 CGCTGATCCAAGTGAAGTCCTAAT 60.682 45.833 0.00 0.00 0.00 1.73
5146 5701 3.368427 CGCTGATCCAAGTGAAGTCCTAA 60.368 47.826 0.00 0.00 0.00 2.69
5147 5702 2.166459 CGCTGATCCAAGTGAAGTCCTA 59.834 50.000 0.00 0.00 0.00 2.94
5148 5703 1.066573 CGCTGATCCAAGTGAAGTCCT 60.067 52.381 0.00 0.00 0.00 3.85
5149 5704 1.066858 TCGCTGATCCAAGTGAAGTCC 60.067 52.381 0.00 0.00 33.84 3.85
5150 5705 1.996191 GTCGCTGATCCAAGTGAAGTC 59.004 52.381 0.00 0.00 38.37 3.01
5151 5706 1.338200 GGTCGCTGATCCAAGTGAAGT 60.338 52.381 0.00 0.00 38.37 3.01
5152 5707 1.363744 GGTCGCTGATCCAAGTGAAG 58.636 55.000 0.00 0.00 38.37 3.02
5153 5708 0.036388 GGGTCGCTGATCCAAGTGAA 60.036 55.000 3.38 0.00 38.37 3.18
5154 5709 1.596934 GGGTCGCTGATCCAAGTGA 59.403 57.895 3.38 0.00 32.11 3.41
5155 5710 1.811266 CGGGTCGCTGATCCAAGTG 60.811 63.158 8.28 0.00 31.02 3.16
5156 5711 1.982395 TCGGGTCGCTGATCCAAGT 60.982 57.895 8.28 0.00 31.02 3.16
5157 5712 1.519455 GTCGGGTCGCTGATCCAAG 60.519 63.158 8.28 0.00 31.02 3.61
5158 5713 1.822114 TTGTCGGGTCGCTGATCCAA 61.822 55.000 8.28 0.00 31.02 3.53
5159 5714 1.613317 ATTGTCGGGTCGCTGATCCA 61.613 55.000 8.28 0.00 31.02 3.41
5160 5715 0.462047 AATTGTCGGGTCGCTGATCC 60.462 55.000 0.00 0.00 0.00 3.36
5161 5716 1.062587 CAAATTGTCGGGTCGCTGATC 59.937 52.381 0.00 0.00 0.00 2.92
5162 5717 1.086696 CAAATTGTCGGGTCGCTGAT 58.913 50.000 0.00 0.00 0.00 2.90
5163 5718 1.573829 GCAAATTGTCGGGTCGCTGA 61.574 55.000 0.00 0.00 0.00 4.26
5164 5719 1.154225 GCAAATTGTCGGGTCGCTG 60.154 57.895 0.00 0.00 0.00 5.18
5165 5720 1.169661 TTGCAAATTGTCGGGTCGCT 61.170 50.000 0.00 0.00 0.00 4.93
5166 5721 0.729140 CTTGCAAATTGTCGGGTCGC 60.729 55.000 0.00 0.00 0.00 5.19
5167 5722 0.729140 GCTTGCAAATTGTCGGGTCG 60.729 55.000 0.00 0.00 0.00 4.79
5168 5723 0.598065 AGCTTGCAAATTGTCGGGTC 59.402 50.000 0.00 0.00 0.00 4.46
5169 5724 1.039856 AAGCTTGCAAATTGTCGGGT 58.960 45.000 0.00 0.00 0.00 5.28
5170 5725 1.000385 TCAAGCTTGCAAATTGTCGGG 60.000 47.619 21.99 0.00 0.00 5.14
5171 5726 2.053627 GTCAAGCTTGCAAATTGTCGG 58.946 47.619 21.99 0.50 0.00 4.79
5172 5727 2.975851 GAGTCAAGCTTGCAAATTGTCG 59.024 45.455 21.99 1.15 0.00 4.35
5173 5728 3.005155 AGGAGTCAAGCTTGCAAATTGTC 59.995 43.478 21.99 14.74 0.00 3.18
5174 5729 2.961062 AGGAGTCAAGCTTGCAAATTGT 59.039 40.909 21.99 0.44 0.00 2.71
5175 5730 3.314553 CAGGAGTCAAGCTTGCAAATTG 58.685 45.455 21.99 14.87 0.00 2.32
5176 5731 2.288640 GCAGGAGTCAAGCTTGCAAATT 60.289 45.455 21.99 1.16 32.64 1.82
5177 5732 1.271656 GCAGGAGTCAAGCTTGCAAAT 59.728 47.619 21.99 4.55 32.64 2.32
5178 5733 0.670162 GCAGGAGTCAAGCTTGCAAA 59.330 50.000 21.99 1.40 32.64 3.68
5179 5734 0.179009 AGCAGGAGTCAAGCTTGCAA 60.179 50.000 21.99 2.23 34.31 4.08
5180 5735 0.179009 AAGCAGGAGTCAAGCTTGCA 60.179 50.000 21.99 7.99 45.99 4.08
5181 5736 2.638744 AAGCAGGAGTCAAGCTTGC 58.361 52.632 21.99 16.05 45.99 4.01
5184 5739 2.251818 TGTAGAAGCAGGAGTCAAGCT 58.748 47.619 2.98 2.98 41.03 3.74
5185 5740 2.739379 GTTGTAGAAGCAGGAGTCAAGC 59.261 50.000 0.00 0.00 0.00 4.01
5186 5741 2.989840 CGTTGTAGAAGCAGGAGTCAAG 59.010 50.000 0.00 0.00 0.00 3.02
5187 5742 2.288825 CCGTTGTAGAAGCAGGAGTCAA 60.289 50.000 0.00 0.00 0.00 3.18
5188 5743 1.272490 CCGTTGTAGAAGCAGGAGTCA 59.728 52.381 0.00 0.00 0.00 3.41
5189 5744 1.272769 ACCGTTGTAGAAGCAGGAGTC 59.727 52.381 0.00 0.00 0.00 3.36
5190 5745 1.000955 CACCGTTGTAGAAGCAGGAGT 59.999 52.381 0.00 0.00 0.00 3.85
5191 5746 1.272490 TCACCGTTGTAGAAGCAGGAG 59.728 52.381 0.00 0.00 0.00 3.69
5192 5747 1.272490 CTCACCGTTGTAGAAGCAGGA 59.728 52.381 0.00 0.00 0.00 3.86
5193 5748 1.000955 ACTCACCGTTGTAGAAGCAGG 59.999 52.381 0.00 0.00 0.00 4.85
5194 5749 2.440539 ACTCACCGTTGTAGAAGCAG 57.559 50.000 0.00 0.00 0.00 4.24
5195 5750 2.479837 CAACTCACCGTTGTAGAAGCA 58.520 47.619 0.00 0.00 46.23 3.91
5204 5759 4.870190 GGTGTCCAACTCACCGTT 57.130 55.556 0.00 0.00 44.34 4.44
5209 5764 3.547746 GTTAAAGTGGGTGTCCAACTCA 58.452 45.455 0.00 0.00 46.04 3.41
5210 5765 2.882761 GGTTAAAGTGGGTGTCCAACTC 59.117 50.000 0.00 0.00 46.04 3.01
5211 5766 2.423803 GGGTTAAAGTGGGTGTCCAACT 60.424 50.000 0.00 0.00 46.04 3.16
5212 5767 1.958579 GGGTTAAAGTGGGTGTCCAAC 59.041 52.381 0.00 0.00 46.04 3.77
5213 5768 1.854280 AGGGTTAAAGTGGGTGTCCAA 59.146 47.619 0.00 0.00 46.04 3.53
5214 5769 1.422402 GAGGGTTAAAGTGGGTGTCCA 59.578 52.381 0.00 0.00 41.58 4.02
5215 5770 1.422402 TGAGGGTTAAAGTGGGTGTCC 59.578 52.381 0.00 0.00 0.00 4.02
5216 5771 2.943036 TGAGGGTTAAAGTGGGTGTC 57.057 50.000 0.00 0.00 0.00 3.67
5217 5772 2.817839 GCATGAGGGTTAAAGTGGGTGT 60.818 50.000 0.00 0.00 0.00 4.16
5218 5773 1.818674 GCATGAGGGTTAAAGTGGGTG 59.181 52.381 0.00 0.00 0.00 4.61
5219 5774 1.272480 GGCATGAGGGTTAAAGTGGGT 60.272 52.381 0.00 0.00 0.00 4.51
5220 5775 1.474330 GGCATGAGGGTTAAAGTGGG 58.526 55.000 0.00 0.00 0.00 4.61
5221 5776 1.005924 AGGGCATGAGGGTTAAAGTGG 59.994 52.381 0.00 0.00 0.00 4.00
5222 5777 2.369394 GAGGGCATGAGGGTTAAAGTG 58.631 52.381 0.00 0.00 0.00 3.16
5223 5778 1.285078 GGAGGGCATGAGGGTTAAAGT 59.715 52.381 0.00 0.00 0.00 2.66
5224 5779 1.284785 TGGAGGGCATGAGGGTTAAAG 59.715 52.381 0.00 0.00 0.00 1.85
5225 5780 1.377690 TGGAGGGCATGAGGGTTAAA 58.622 50.000 0.00 0.00 0.00 1.52
5226 5781 1.215173 CATGGAGGGCATGAGGGTTAA 59.785 52.381 0.00 0.00 32.09 2.01
5227 5782 0.846015 CATGGAGGGCATGAGGGTTA 59.154 55.000 0.00 0.00 32.09 2.85
5228 5783 1.616921 CATGGAGGGCATGAGGGTT 59.383 57.895 0.00 0.00 32.09 4.11
5229 5784 3.065787 GCATGGAGGGCATGAGGGT 62.066 63.158 0.00 0.00 32.09 4.34
5230 5785 2.203451 GCATGGAGGGCATGAGGG 60.203 66.667 0.00 0.00 32.09 4.30
5231 5786 1.228184 GAGCATGGAGGGCATGAGG 60.228 63.158 0.00 0.00 32.09 3.86
5232 5787 0.183014 AAGAGCATGGAGGGCATGAG 59.817 55.000 0.00 0.00 32.09 2.90
5233 5788 0.627451 AAAGAGCATGGAGGGCATGA 59.373 50.000 0.00 0.00 32.09 3.07
5234 5789 1.030457 GAAAGAGCATGGAGGGCATG 58.970 55.000 0.00 0.00 0.00 4.06
5235 5790 0.465097 CGAAAGAGCATGGAGGGCAT 60.465 55.000 0.00 0.00 0.00 4.40
5236 5791 1.078214 CGAAAGAGCATGGAGGGCA 60.078 57.895 0.00 0.00 0.00 5.36
5237 5792 2.476320 GCGAAAGAGCATGGAGGGC 61.476 63.158 0.00 0.00 37.05 5.19
5238 5793 1.821332 GGCGAAAGAGCATGGAGGG 60.821 63.158 0.00 0.00 39.27 4.30
5239 5794 1.821332 GGGCGAAAGAGCATGGAGG 60.821 63.158 0.00 0.00 39.27 4.30
5240 5795 0.813210 GAGGGCGAAAGAGCATGGAG 60.813 60.000 0.00 0.00 39.27 3.86
5241 5796 1.221840 GAGGGCGAAAGAGCATGGA 59.778 57.895 0.00 0.00 39.27 3.41
5242 5797 2.176273 CGAGGGCGAAAGAGCATGG 61.176 63.158 0.00 0.00 40.82 3.66
5243 5798 2.817423 GCGAGGGCGAAAGAGCATG 61.817 63.158 0.00 0.00 40.82 4.06
5244 5799 2.512515 GCGAGGGCGAAAGAGCAT 60.513 61.111 0.00 0.00 40.82 3.79
5245 5800 3.649277 GAGCGAGGGCGAAAGAGCA 62.649 63.158 0.00 0.00 46.35 4.26
5246 5801 2.888051 GAGCGAGGGCGAAAGAGC 60.888 66.667 0.00 0.00 46.35 4.09
5247 5802 1.226831 GAGAGCGAGGGCGAAAGAG 60.227 63.158 0.00 0.00 46.35 2.85
5248 5803 2.711922 GGAGAGCGAGGGCGAAAGA 61.712 63.158 0.00 0.00 46.35 2.52
5249 5804 2.202810 GGAGAGCGAGGGCGAAAG 60.203 66.667 0.00 0.00 46.35 2.62
5250 5805 2.994995 TGGAGAGCGAGGGCGAAA 60.995 61.111 0.00 0.00 46.35 3.46
5251 5806 3.452786 CTGGAGAGCGAGGGCGAA 61.453 66.667 0.00 0.00 46.35 4.70
5268 5823 0.465278 GAGGAGAAGGGAGCAATGGC 60.465 60.000 0.00 0.00 41.61 4.40
5269 5824 0.179062 CGAGGAGAAGGGAGCAATGG 60.179 60.000 0.00 0.00 0.00 3.16
5270 5825 0.813210 GCGAGGAGAAGGGAGCAATG 60.813 60.000 0.00 0.00 0.00 2.82
5271 5826 1.524482 GCGAGGAGAAGGGAGCAAT 59.476 57.895 0.00 0.00 0.00 3.56
5272 5827 2.660064 GGCGAGGAGAAGGGAGCAA 61.660 63.158 0.00 0.00 0.00 3.91
5273 5828 3.077556 GGCGAGGAGAAGGGAGCA 61.078 66.667 0.00 0.00 0.00 4.26
5274 5829 2.762043 AGGCGAGGAGAAGGGAGC 60.762 66.667 0.00 0.00 0.00 4.70
5275 5830 1.684049 ACAGGCGAGGAGAAGGGAG 60.684 63.158 0.00 0.00 0.00 4.30
5276 5831 1.984570 CACAGGCGAGGAGAAGGGA 60.985 63.158 0.00 0.00 0.00 4.20
5277 5832 1.984570 TCACAGGCGAGGAGAAGGG 60.985 63.158 0.00 0.00 0.00 3.95
5278 5833 1.216710 GTCACAGGCGAGGAGAAGG 59.783 63.158 0.00 0.00 0.00 3.46
5279 5834 0.108898 CTGTCACAGGCGAGGAGAAG 60.109 60.000 0.00 0.00 0.00 2.85
5280 5835 0.827925 ACTGTCACAGGCGAGGAGAA 60.828 55.000 10.28 0.00 35.51 2.87
5281 5836 1.228583 ACTGTCACAGGCGAGGAGA 60.229 57.895 10.28 0.00 35.51 3.71
5282 5837 1.080230 CACTGTCACAGGCGAGGAG 60.080 63.158 10.28 0.00 35.51 3.69
5283 5838 2.574018 CCACTGTCACAGGCGAGGA 61.574 63.158 10.28 0.00 35.51 3.71
5284 5839 2.047844 CCACTGTCACAGGCGAGG 60.048 66.667 10.28 1.55 35.51 4.63
5285 5840 2.047844 CCCACTGTCACAGGCGAG 60.048 66.667 10.28 0.00 35.51 5.03
5286 5841 4.314440 GCCCACTGTCACAGGCGA 62.314 66.667 10.28 0.00 35.51 5.54
5288 5843 3.909086 GAGGCCCACTGTCACAGGC 62.909 68.421 10.28 3.58 44.99 4.85
5289 5844 2.348998 GAGGCCCACTGTCACAGG 59.651 66.667 10.28 0.00 35.51 4.00
5290 5845 2.047844 CGAGGCCCACTGTCACAG 60.048 66.667 2.22 2.22 37.52 3.66
5291 5846 2.523168 TCGAGGCCCACTGTCACA 60.523 61.111 0.00 0.00 0.00 3.58
5292 5847 2.262915 CTCGAGGCCCACTGTCAC 59.737 66.667 3.91 0.00 0.00 3.67
5293 5848 2.997315 CCTCGAGGCCCACTGTCA 60.997 66.667 20.67 0.00 0.00 3.58
5294 5849 2.997897 ACCTCGAGGCCCACTGTC 60.998 66.667 31.56 0.00 39.32 3.51
5295 5850 3.314331 CACCTCGAGGCCCACTGT 61.314 66.667 31.56 7.06 39.32 3.55
5296 5851 4.767255 GCACCTCGAGGCCCACTG 62.767 72.222 31.56 21.57 39.32 3.66
5305 5860 1.587043 CTGGTTCTCTCGCACCTCGA 61.587 60.000 0.00 0.00 46.29 4.04
5306 5861 1.153939 CTGGTTCTCTCGCACCTCG 60.154 63.158 0.00 0.00 40.15 4.63
5307 5862 1.446966 GCTGGTTCTCTCGCACCTC 60.447 63.158 0.00 0.00 33.76 3.85
5308 5863 2.659610 GCTGGTTCTCTCGCACCT 59.340 61.111 0.00 0.00 33.76 4.00
5309 5864 2.765250 TTCGCTGGTTCTCTCGCACC 62.765 60.000 0.00 0.00 0.00 5.01
5310 5865 0.944311 TTTCGCTGGTTCTCTCGCAC 60.944 55.000 0.00 0.00 0.00 5.34
5311 5866 0.249699 TTTTCGCTGGTTCTCTCGCA 60.250 50.000 0.00 0.00 0.00 5.10
5312 5867 0.440371 CTTTTCGCTGGTTCTCTCGC 59.560 55.000 0.00 0.00 0.00 5.03
5313 5868 1.784525 ACTTTTCGCTGGTTCTCTCG 58.215 50.000 0.00 0.00 0.00 4.04
5314 5869 2.349912 GCAACTTTTCGCTGGTTCTCTC 60.350 50.000 0.00 0.00 0.00 3.20
5315 5870 1.604278 GCAACTTTTCGCTGGTTCTCT 59.396 47.619 0.00 0.00 0.00 3.10
5316 5871 1.604278 AGCAACTTTTCGCTGGTTCTC 59.396 47.619 0.00 0.00 37.02 2.87
5317 5872 1.604278 GAGCAACTTTTCGCTGGTTCT 59.396 47.619 0.00 0.00 38.99 3.01
5318 5873 1.660333 CGAGCAACTTTTCGCTGGTTC 60.660 52.381 0.00 0.00 38.99 3.62
5319 5874 0.307760 CGAGCAACTTTTCGCTGGTT 59.692 50.000 0.00 0.00 38.99 3.67
5320 5875 0.531974 TCGAGCAACTTTTCGCTGGT 60.532 50.000 0.00 0.00 38.99 4.00
5321 5876 0.110644 GTCGAGCAACTTTTCGCTGG 60.111 55.000 0.00 0.00 38.99 4.85
5322 5877 0.110644 GGTCGAGCAACTTTTCGCTG 60.111 55.000 10.30 0.00 38.99 5.18
5323 5878 0.249911 AGGTCGAGCAACTTTTCGCT 60.250 50.000 18.15 0.00 42.42 4.93
5324 5879 0.586802 AAGGTCGAGCAACTTTTCGC 59.413 50.000 18.15 0.00 36.79 4.70
5325 5880 1.136611 CGAAGGTCGAGCAACTTTTCG 60.137 52.381 18.15 17.77 43.74 3.46
5326 5881 1.398578 GCGAAGGTCGAGCAACTTTTC 60.399 52.381 18.15 10.13 43.74 2.29
5327 5882 0.586802 GCGAAGGTCGAGCAACTTTT 59.413 50.000 18.15 1.10 43.74 2.27
5328 5883 0.531974 TGCGAAGGTCGAGCAACTTT 60.532 50.000 18.15 1.52 43.74 2.66
5329 5884 0.320771 ATGCGAAGGTCGAGCAACTT 60.321 50.000 18.15 1.93 43.74 2.66
5330 5885 0.737715 GATGCGAAGGTCGAGCAACT 60.738 55.000 18.15 0.00 43.74 3.16
5331 5886 1.696832 GGATGCGAAGGTCGAGCAAC 61.697 60.000 18.15 6.35 43.74 4.17
5332 5887 1.447838 GGATGCGAAGGTCGAGCAA 60.448 57.895 18.15 0.00 43.74 3.91
5333 5888 2.184322 GGATGCGAAGGTCGAGCA 59.816 61.111 18.15 8.16 43.74 4.26
5334 5889 2.586357 GGGATGCGAAGGTCGAGC 60.586 66.667 6.48 6.48 43.74 5.03
5335 5890 1.066587 GAGGGATGCGAAGGTCGAG 59.933 63.158 1.05 0.00 43.74 4.04
5336 5891 0.970937 AAGAGGGATGCGAAGGTCGA 60.971 55.000 1.05 0.00 43.74 4.20
5337 5892 0.528684 GAAGAGGGATGCGAAGGTCG 60.529 60.000 0.00 0.00 43.89 4.79
5338 5893 0.528684 CGAAGAGGGATGCGAAGGTC 60.529 60.000 0.00 0.00 0.00 3.85
5339 5894 0.970937 TCGAAGAGGGATGCGAAGGT 60.971 55.000 0.00 0.00 0.00 3.50
5340 5895 1.816537 TCGAAGAGGGATGCGAAGG 59.183 57.895 0.00 0.00 0.00 3.46
5351 5906 2.183858 TCGTGTGTCGCCTCGAAGAG 62.184 60.000 0.00 0.00 46.24 2.85
5352 5907 2.183858 CTCGTGTGTCGCCTCGAAGA 62.184 60.000 0.00 0.00 37.72 2.87
5353 5908 1.797933 CTCGTGTGTCGCCTCGAAG 60.798 63.158 0.00 0.00 37.72 3.79
5354 5909 2.183858 CTCTCGTGTGTCGCCTCGAA 62.184 60.000 0.00 0.00 37.72 3.71
5355 5910 2.667199 TCTCGTGTGTCGCCTCGA 60.667 61.111 0.00 0.00 39.67 4.04
5356 5911 2.202362 CTCTCGTGTGTCGCCTCG 60.202 66.667 0.00 0.00 39.67 4.63
5357 5912 2.179517 CCTCTCGTGTGTCGCCTC 59.820 66.667 0.00 0.00 39.67 4.70
5358 5913 3.374402 CCCTCTCGTGTGTCGCCT 61.374 66.667 0.00 0.00 39.67 5.52
5359 5914 4.436998 CCCCTCTCGTGTGTCGCC 62.437 72.222 0.00 0.00 39.67 5.54
5360 5915 4.436998 CCCCCTCTCGTGTGTCGC 62.437 72.222 0.00 0.00 39.67 5.19
5382 5937 0.550393 AGGGGAAGGAGGAAAGGGTC 60.550 60.000 0.00 0.00 0.00 4.46
5383 5938 0.550393 GAGGGGAAGGAGGAAAGGGT 60.550 60.000 0.00 0.00 0.00 4.34
5384 5939 1.282653 GGAGGGGAAGGAGGAAAGGG 61.283 65.000 0.00 0.00 0.00 3.95
5385 5940 1.282653 GGGAGGGGAAGGAGGAAAGG 61.283 65.000 0.00 0.00 0.00 3.11
5386 5941 1.282653 GGGGAGGGGAAGGAGGAAAG 61.283 65.000 0.00 0.00 0.00 2.62
5387 5942 1.230182 GGGGAGGGGAAGGAGGAAA 60.230 63.158 0.00 0.00 0.00 3.13
5388 5943 2.459710 GGGGAGGGGAAGGAGGAA 59.540 66.667 0.00 0.00 0.00 3.36
5389 5944 3.707189 GGGGGAGGGGAAGGAGGA 61.707 72.222 0.00 0.00 0.00 3.71
5390 5945 3.711782 AGGGGGAGGGGAAGGAGG 61.712 72.222 0.00 0.00 0.00 4.30
5391 5946 2.040359 GAGGGGGAGGGGAAGGAG 60.040 72.222 0.00 0.00 0.00 3.69
5392 5947 4.089757 CGAGGGGGAGGGGAAGGA 62.090 72.222 0.00 0.00 0.00 3.36
5406 5961 4.519437 TCATCTGGCAGCGGCGAG 62.519 66.667 12.98 14.41 46.10 5.03
5407 5962 4.081185 TTCATCTGGCAGCGGCGA 62.081 61.111 12.98 0.00 42.47 5.54
5408 5963 3.570638 CTTCATCTGGCAGCGGCG 61.571 66.667 10.34 0.51 42.47 6.46
5409 5964 3.885521 GCTTCATCTGGCAGCGGC 61.886 66.667 10.34 0.00 40.13 6.53
5410 5965 3.207669 GGCTTCATCTGGCAGCGG 61.208 66.667 10.34 4.14 34.09 5.52
5411 5966 3.207669 GGGCTTCATCTGGCAGCG 61.208 66.667 10.34 3.30 34.09 5.18
5412 5967 3.207669 CGGGCTTCATCTGGCAGC 61.208 66.667 10.34 0.00 0.00 5.25
5413 5968 2.515523 CCGGGCTTCATCTGGCAG 60.516 66.667 8.58 8.58 0.00 4.85
5414 5969 4.113815 CCCGGGCTTCATCTGGCA 62.114 66.667 8.08 0.00 0.00 4.92
5416 5971 4.113815 TGCCCGGGCTTCATCTGG 62.114 66.667 43.34 4.66 42.51 3.86
5417 5972 2.515523 CTGCCCGGGCTTCATCTG 60.516 66.667 43.34 20.93 42.51 2.90
5418 5973 3.011517 ACTGCCCGGGCTTCATCT 61.012 61.111 43.34 17.95 42.51 2.90
5419 5974 2.825836 CACTGCCCGGGCTTCATC 60.826 66.667 43.34 17.00 42.51 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.