Multiple sequence alignment - TraesCS3B01G252400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G252400 chr3B 100.000 4581 0 0 1 4581 405661376 405656796 0.000000e+00 8460.0
1 TraesCS3B01G252400 chr3B 94.516 547 24 5 4038 4581 60766901 60766358 0.000000e+00 839.0
2 TraesCS3B01G252400 chr3A 89.764 1905 109 50 825 2695 416448685 416450537 0.000000e+00 2359.0
3 TraesCS3B01G252400 chr3A 96.447 788 27 1 1 787 51428677 51427890 0.000000e+00 1299.0
4 TraesCS3B01G252400 chr3A 92.105 836 29 15 3218 4037 416450537 416451351 0.000000e+00 1144.0
5 TraesCS3B01G252400 chr3D 92.908 987 54 8 1723 2695 313893940 313894924 0.000000e+00 1421.0
6 TraesCS3B01G252400 chr3D 93.919 888 32 14 788 1670 313893084 313893954 0.000000e+00 1321.0
7 TraesCS3B01G252400 chr3D 94.519 675 20 7 3218 3892 313894924 313895581 0.000000e+00 1026.0
8 TraesCS3B01G252400 chr3D 87.075 147 7 3 3906 4040 313898517 313898663 6.140000e-34 156.0
9 TraesCS3B01G252400 chr5B 97.843 788 16 1 1 787 669458846 669459633 0.000000e+00 1360.0
10 TraesCS3B01G252400 chr5B 92.505 547 39 2 4037 4581 130929926 130929380 0.000000e+00 782.0
11 TraesCS3B01G252400 chr5B 89.946 557 36 11 4037 4581 470276582 470276034 0.000000e+00 701.0
12 TraesCS3B01G252400 chr4B 96.460 791 27 1 1 790 439742727 439741937 0.000000e+00 1304.0
13 TraesCS3B01G252400 chr4B 96.574 788 26 1 1 787 469512848 469512061 0.000000e+00 1304.0
14 TraesCS3B01G252400 chr4B 94.353 549 24 5 4039 4581 89047859 89047312 0.000000e+00 835.0
15 TraesCS3B01G252400 chr4B 89.024 164 15 2 3047 3208 641722261 641722423 2.800000e-47 200.0
16 TraesCS3B01G252400 chr2B 96.320 788 28 1 1 787 152850491 152849704 0.000000e+00 1293.0
17 TraesCS3B01G252400 chr2B 95.954 791 30 2 1 790 733202563 733201774 0.000000e+00 1282.0
18 TraesCS3B01G252400 chr2B 95.340 515 14 3 2704 3208 33814523 33814009 0.000000e+00 809.0
19 TraesCS3B01G252400 chr2B 95.000 520 15 4 2704 3213 33813068 33812550 0.000000e+00 806.0
20 TraesCS3B01G252400 chr2B 92.336 548 33 8 4038 4581 726695028 726695570 0.000000e+00 771.0
21 TraesCS3B01G252400 chr2B 91.241 548 39 8 4039 4581 260620702 260621245 0.000000e+00 737.0
22 TraesCS3B01G252400 chr2B 100.000 55 0 0 1670 1724 717868991 717869045 8.110000e-18 102.0
23 TraesCS3B01G252400 chr2B 96.610 59 1 1 1667 1724 798133696 798133638 3.770000e-16 97.1
24 TraesCS3B01G252400 chr2B 81.197 117 18 4 1499 1613 508214707 508214593 1.760000e-14 91.6
25 TraesCS3B01G252400 chr7B 96.193 788 28 2 1 787 147553968 147554754 0.000000e+00 1288.0
26 TraesCS3B01G252400 chr7B 96.066 788 29 2 1 787 746586308 746585522 0.000000e+00 1282.0
27 TraesCS3B01G252400 chr7B 82.353 476 66 13 1162 1625 104252390 104252859 9.230000e-107 398.0
28 TraesCS3B01G252400 chr7B 82.759 464 62 12 1162 1613 104468826 104469283 9.230000e-107 398.0
29 TraesCS3B01G252400 chr7B 79.796 490 67 17 1140 1613 104299904 104300377 1.230000e-85 327.0
30 TraesCS3B01G252400 chr7B 80.627 351 49 10 2048 2396 104253347 104253680 2.120000e-63 254.0
31 TraesCS3B01G252400 chr7B 91.257 183 16 0 1789 1971 104252959 104253141 2.740000e-62 250.0
32 TraesCS3B01G252400 chr7B 98.305 59 0 1 1670 1727 709847523 709847581 8.110000e-18 102.0
33 TraesCS3B01G252400 chr7B 100.000 54 0 0 1671 1724 65755196 65755249 2.920000e-17 100.0
34 TraesCS3B01G252400 chr1B 96.188 787 30 0 1 787 670400426 670401212 0.000000e+00 1288.0
35 TraesCS3B01G252400 chr1B 90.270 555 38 10 4035 4578 159215979 159216528 0.000000e+00 712.0
36 TraesCS3B01G252400 chr1B 89.369 555 36 13 4033 4581 28441053 28440516 0.000000e+00 676.0
37 TraesCS3B01G252400 chr1B 86.729 535 41 19 2689 3199 23054134 23054662 6.650000e-158 568.0
38 TraesCS3B01G252400 chr1B 90.249 441 32 4 2704 3137 23033822 23034258 2.390000e-157 566.0
39 TraesCS3B01G252400 chr1B 89.796 441 34 4 2704 3137 23055561 23055997 5.180000e-154 555.0
40 TraesCS3B01G252400 chr1B 87.097 403 30 17 2813 3199 23032485 23032881 1.960000e-118 436.0
41 TraesCS3B01G252400 chr1B 98.276 58 1 0 1667 1724 639103120 639103063 8.110000e-18 102.0
42 TraesCS3B01G252400 chr1B 98.214 56 1 0 1669 1724 410332232 410332177 1.050000e-16 99.0
43 TraesCS3B01G252400 chr6B 95.652 506 13 2 2712 3208 200772860 200772355 0.000000e+00 804.0
44 TraesCS3B01G252400 chr6B 94.942 514 17 5 2704 3208 200774323 200773810 0.000000e+00 797.0
45 TraesCS3B01G252400 chr6B 89.350 554 39 11 4039 4581 260605033 260605577 0.000000e+00 678.0
46 TraesCS3B01G252400 chr6B 96.721 61 0 2 1666 1724 18127968 18127908 2.920000e-17 100.0
47 TraesCS3B01G252400 chrUn 86.729 535 41 19 2689 3199 383533728 383533200 6.650000e-158 568.0
48 TraesCS3B01G252400 chrUn 89.024 164 15 2 3047 3208 352939560 352939722 2.800000e-47 200.0
49 TraesCS3B01G252400 chr7A 80.222 632 91 24 1789 2396 139104061 139104682 1.170000e-120 444.0
50 TraesCS3B01G252400 chr7A 80.225 622 91 19 1789 2396 139109679 139110282 5.440000e-119 438.0
51 TraesCS3B01G252400 chr7A 82.317 492 65 12 1140 1613 139103444 139103931 1.530000e-109 407.0
52 TraesCS3B01G252400 chr7A 81.667 480 65 19 1162 1625 139109104 139109576 1.200000e-100 377.0
53 TraesCS3B01G252400 chr7A 87.805 82 8 2 2234 2314 36560264 36560184 1.360000e-15 95.3
54 TraesCS3B01G252400 chr7D 79.538 650 96 23 1789 2421 139088568 139089197 3.270000e-116 429.0
55 TraesCS3B01G252400 chr7D 82.947 475 66 12 1162 1625 139087995 139088465 9.170000e-112 414.0
56 TraesCS3B01G252400 chr6D 86.854 213 21 5 3217 3428 397615424 397615218 9.910000e-57 231.0
57 TraesCS3B01G252400 chr6D 87.805 82 8 2 2234 2314 69744524 69744444 1.360000e-15 95.3
58 TraesCS3B01G252400 chr1D 100.000 56 0 0 1669 1724 473344623 473344568 2.250000e-18 104.0
59 TraesCS3B01G252400 chr2D 98.246 57 1 0 1668 1724 60774847 60774791 2.920000e-17 100.0
60 TraesCS3B01G252400 chr2D 81.452 124 19 4 1492 1613 430022583 430022462 1.050000e-16 99.0
61 TraesCS3B01G252400 chr2D 88.608 79 7 2 2234 2311 552084438 552084361 1.360000e-15 95.3
62 TraesCS3B01G252400 chr2A 81.897 116 17 4 1500 1613 556986792 556986905 1.360000e-15 95.3
63 TraesCS3B01G252400 chr2A 84.536 97 11 4 1493 1587 555883743 555883837 4.880000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G252400 chr3B 405656796 405661376 4580 True 8460.000000 8460 100.000000 1 4581 1 chr3B.!!$R2 4580
1 TraesCS3B01G252400 chr3B 60766358 60766901 543 True 839.000000 839 94.516000 4038 4581 1 chr3B.!!$R1 543
2 TraesCS3B01G252400 chr3A 416448685 416451351 2666 False 1751.500000 2359 90.934500 825 4037 2 chr3A.!!$F1 3212
3 TraesCS3B01G252400 chr3A 51427890 51428677 787 True 1299.000000 1299 96.447000 1 787 1 chr3A.!!$R1 786
4 TraesCS3B01G252400 chr3D 313893084 313898663 5579 False 981.000000 1421 92.105250 788 4040 4 chr3D.!!$F1 3252
5 TraesCS3B01G252400 chr5B 669458846 669459633 787 False 1360.000000 1360 97.843000 1 787 1 chr5B.!!$F1 786
6 TraesCS3B01G252400 chr5B 130929380 130929926 546 True 782.000000 782 92.505000 4037 4581 1 chr5B.!!$R1 544
7 TraesCS3B01G252400 chr5B 470276034 470276582 548 True 701.000000 701 89.946000 4037 4581 1 chr5B.!!$R2 544
8 TraesCS3B01G252400 chr4B 439741937 439742727 790 True 1304.000000 1304 96.460000 1 790 1 chr4B.!!$R2 789
9 TraesCS3B01G252400 chr4B 469512061 469512848 787 True 1304.000000 1304 96.574000 1 787 1 chr4B.!!$R3 786
10 TraesCS3B01G252400 chr4B 89047312 89047859 547 True 835.000000 835 94.353000 4039 4581 1 chr4B.!!$R1 542
11 TraesCS3B01G252400 chr2B 152849704 152850491 787 True 1293.000000 1293 96.320000 1 787 1 chr2B.!!$R1 786
12 TraesCS3B01G252400 chr2B 733201774 733202563 789 True 1282.000000 1282 95.954000 1 790 1 chr2B.!!$R3 789
13 TraesCS3B01G252400 chr2B 33812550 33814523 1973 True 807.500000 809 95.170000 2704 3213 2 chr2B.!!$R5 509
14 TraesCS3B01G252400 chr2B 726695028 726695570 542 False 771.000000 771 92.336000 4038 4581 1 chr2B.!!$F3 543
15 TraesCS3B01G252400 chr2B 260620702 260621245 543 False 737.000000 737 91.241000 4039 4581 1 chr2B.!!$F1 542
16 TraesCS3B01G252400 chr7B 147553968 147554754 786 False 1288.000000 1288 96.193000 1 787 1 chr7B.!!$F4 786
17 TraesCS3B01G252400 chr7B 746585522 746586308 786 True 1282.000000 1282 96.066000 1 787 1 chr7B.!!$R1 786
18 TraesCS3B01G252400 chr7B 104252390 104253680 1290 False 300.666667 398 84.745667 1162 2396 3 chr7B.!!$F6 1234
19 TraesCS3B01G252400 chr1B 670400426 670401212 786 False 1288.000000 1288 96.188000 1 787 1 chr1B.!!$F2 786
20 TraesCS3B01G252400 chr1B 159215979 159216528 549 False 712.000000 712 90.270000 4035 4578 1 chr1B.!!$F1 543
21 TraesCS3B01G252400 chr1B 28440516 28441053 537 True 676.000000 676 89.369000 4033 4581 1 chr1B.!!$R1 548
22 TraesCS3B01G252400 chr1B 23054134 23055997 1863 False 561.500000 568 88.262500 2689 3199 2 chr1B.!!$F4 510
23 TraesCS3B01G252400 chr1B 23032485 23034258 1773 False 501.000000 566 88.673000 2704 3199 2 chr1B.!!$F3 495
24 TraesCS3B01G252400 chr6B 200772355 200774323 1968 True 800.500000 804 95.297000 2704 3208 2 chr6B.!!$R2 504
25 TraesCS3B01G252400 chr6B 260605033 260605577 544 False 678.000000 678 89.350000 4039 4581 1 chr6B.!!$F1 542
26 TraesCS3B01G252400 chrUn 383533200 383533728 528 True 568.000000 568 86.729000 2689 3199 1 chrUn.!!$R1 510
27 TraesCS3B01G252400 chr7A 139103444 139104682 1238 False 425.500000 444 81.269500 1140 2396 2 chr7A.!!$F1 1256
28 TraesCS3B01G252400 chr7A 139109104 139110282 1178 False 407.500000 438 80.946000 1162 2396 2 chr7A.!!$F2 1234
29 TraesCS3B01G252400 chr7D 139087995 139089197 1202 False 421.500000 429 81.242500 1162 2421 2 chr7D.!!$F1 1259

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
610 612 0.389817 CCGATCCAGTCTTTGCGTCA 60.390 55.0 0.0 0.0 0.0 4.35 F
1115 1118 0.043940 ATGCAGAGTCCTCCCTTCCT 59.956 55.0 0.0 0.0 0.0 3.36 F
1133 1136 0.323908 CTCTTCCTCCCGGTCTCACT 60.324 60.0 0.0 0.0 0.0 3.41 F
2795 3075 0.114560 AGGAAGGAGAAGGACACGGA 59.885 55.0 0.0 0.0 0.0 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1981 2109 0.458716 GAGGCACACGAGTTAGAGCC 60.459 60.000 4.25 4.25 42.31 4.70 R
1982 2110 0.458716 GGAGGCACACGAGTTAGAGC 60.459 60.000 0.00 0.00 0.00 4.09 R
2854 3141 2.009774 GCTGCGGTGATCATTGTAAGT 58.990 47.619 0.00 0.00 0.00 2.24 R
4403 9119 1.291132 GGACTGTCCGCAATAAGCTC 58.709 55.000 11.71 0.00 42.61 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
292 293 2.052690 GTCTCCCGCTCCAGTGCTA 61.053 63.158 0.00 0.00 0.00 3.49
610 612 0.389817 CCGATCCAGTCTTTGCGTCA 60.390 55.000 0.00 0.00 0.00 4.35
718 721 2.273538 ATAGTCGAGGACGTGGCTAT 57.726 50.000 0.00 0.00 37.67 2.97
1096 1099 3.042682 TCTCGCCACCCTCCATTTATTA 58.957 45.455 0.00 0.00 0.00 0.98
1097 1100 3.650942 TCTCGCCACCCTCCATTTATTAT 59.349 43.478 0.00 0.00 0.00 1.28
1098 1101 3.750371 TCGCCACCCTCCATTTATTATG 58.250 45.455 0.00 0.00 0.00 1.90
1099 1102 2.228822 CGCCACCCTCCATTTATTATGC 59.771 50.000 0.00 0.00 0.00 3.14
1100 1103 3.230134 GCCACCCTCCATTTATTATGCA 58.770 45.455 0.00 0.00 0.00 3.96
1101 1104 3.256631 GCCACCCTCCATTTATTATGCAG 59.743 47.826 0.00 0.00 0.00 4.41
1103 1106 4.763793 CCACCCTCCATTTATTATGCAGAG 59.236 45.833 0.00 0.00 0.00 3.35
1105 1108 5.471456 CACCCTCCATTTATTATGCAGAGTC 59.529 44.000 0.00 0.00 0.00 3.36
1106 1109 5.006386 CCCTCCATTTATTATGCAGAGTCC 58.994 45.833 0.00 0.00 0.00 3.85
1107 1110 5.222007 CCCTCCATTTATTATGCAGAGTCCT 60.222 44.000 0.00 0.00 0.00 3.85
1108 1111 5.936956 CCTCCATTTATTATGCAGAGTCCTC 59.063 44.000 0.00 0.00 0.00 3.71
1109 1112 5.869579 TCCATTTATTATGCAGAGTCCTCC 58.130 41.667 0.00 0.00 0.00 4.30
1112 1115 5.975988 TTTATTATGCAGAGTCCTCCCTT 57.024 39.130 0.00 0.00 0.00 3.95
1115 1118 0.043940 ATGCAGAGTCCTCCCTTCCT 59.956 55.000 0.00 0.00 0.00 3.36
1116 1119 0.616111 TGCAGAGTCCTCCCTTCCTC 60.616 60.000 0.00 0.00 0.00 3.71
1117 1120 0.325203 GCAGAGTCCTCCCTTCCTCT 60.325 60.000 0.00 0.00 34.69 3.69
1118 1121 1.899438 GCAGAGTCCTCCCTTCCTCTT 60.899 57.143 0.00 0.00 32.09 2.85
1120 1123 1.007842 AGAGTCCTCCCTTCCTCTTCC 59.992 57.143 0.00 0.00 30.23 3.46
1121 1124 1.007842 GAGTCCTCCCTTCCTCTTCCT 59.992 57.143 0.00 0.00 0.00 3.36
1122 1125 1.007842 AGTCCTCCCTTCCTCTTCCTC 59.992 57.143 0.00 0.00 0.00 3.71
1124 1127 0.692756 CCTCCCTTCCTCTTCCTCCC 60.693 65.000 0.00 0.00 0.00 4.30
1125 1128 1.001760 TCCCTTCCTCTTCCTCCCG 59.998 63.158 0.00 0.00 0.00 5.14
1127 1130 1.306226 CCTTCCTCTTCCTCCCGGT 60.306 63.158 0.00 0.00 0.00 5.28
1128 1131 1.331399 CCTTCCTCTTCCTCCCGGTC 61.331 65.000 0.00 0.00 0.00 4.79
1129 1132 0.324830 CTTCCTCTTCCTCCCGGTCT 60.325 60.000 0.00 0.00 0.00 3.85
1130 1133 0.324460 TTCCTCTTCCTCCCGGTCTC 60.324 60.000 0.00 0.00 0.00 3.36
1131 1134 1.000486 CCTCTTCCTCCCGGTCTCA 60.000 63.158 0.00 0.00 0.00 3.27
1132 1135 1.324005 CCTCTTCCTCCCGGTCTCAC 61.324 65.000 0.00 0.00 0.00 3.51
1133 1136 0.323908 CTCTTCCTCCCGGTCTCACT 60.324 60.000 0.00 0.00 0.00 3.41
1340 1355 1.133915 TCCTCGGCAAGGTTGTTTCTT 60.134 47.619 4.46 0.00 46.32 2.52
1351 1366 4.672409 AGGTTGTTTCTTTTTCTTCTGCG 58.328 39.130 0.00 0.00 0.00 5.18
1353 1368 4.499399 GGTTGTTTCTTTTTCTTCTGCGTC 59.501 41.667 0.00 0.00 0.00 5.19
1649 1761 1.384191 CCCACCCCTTTCTTCCTGG 59.616 63.158 0.00 0.00 0.00 4.45
1650 1762 1.435346 CCCACCCCTTTCTTCCTGGT 61.435 60.000 0.00 0.00 0.00 4.00
1670 1782 4.082125 GGTCATGAGAATCCCTGTGTTTT 58.918 43.478 0.00 0.00 0.00 2.43
1671 1783 4.524328 GGTCATGAGAATCCCTGTGTTTTT 59.476 41.667 0.00 0.00 0.00 1.94
1697 1809 5.927954 TTTTGAAAGATCCAGCAAATTGC 57.072 34.783 10.41 10.41 45.46 3.56
1709 1821 2.690786 GCAAATTGCTGGCTTGATTCA 58.309 42.857 11.19 0.00 40.96 2.57
1710 1822 2.671396 GCAAATTGCTGGCTTGATTCAG 59.329 45.455 11.19 0.00 40.96 3.02
1711 1823 3.615592 GCAAATTGCTGGCTTGATTCAGA 60.616 43.478 11.19 0.00 40.96 3.27
1712 1824 4.755411 CAAATTGCTGGCTTGATTCAGAT 58.245 39.130 0.00 0.00 33.11 2.90
1713 1825 5.175859 CAAATTGCTGGCTTGATTCAGATT 58.824 37.500 0.00 0.00 33.11 2.40
1714 1826 5.416271 AATTGCTGGCTTGATTCAGATTT 57.584 34.783 0.00 0.00 33.11 2.17
1715 1827 6.534475 AATTGCTGGCTTGATTCAGATTTA 57.466 33.333 0.00 0.00 33.11 1.40
1716 1828 5.571784 TTGCTGGCTTGATTCAGATTTAG 57.428 39.130 0.00 0.00 33.11 1.85
1717 1829 3.379372 TGCTGGCTTGATTCAGATTTAGC 59.621 43.478 0.00 0.00 33.11 3.09
1718 1830 3.379372 GCTGGCTTGATTCAGATTTAGCA 59.621 43.478 8.98 0.00 33.11 3.49
1719 1831 4.497674 GCTGGCTTGATTCAGATTTAGCAG 60.498 45.833 8.98 6.19 33.11 4.24
1720 1832 3.949754 TGGCTTGATTCAGATTTAGCAGG 59.050 43.478 8.98 0.00 0.00 4.85
1721 1833 4.202441 GGCTTGATTCAGATTTAGCAGGA 58.798 43.478 8.98 0.00 0.00 3.86
1722 1834 4.641989 GGCTTGATTCAGATTTAGCAGGAA 59.358 41.667 8.98 0.00 0.00 3.36
1723 1835 5.221009 GGCTTGATTCAGATTTAGCAGGAAG 60.221 44.000 8.98 0.00 0.00 3.46
1724 1836 5.587844 GCTTGATTCAGATTTAGCAGGAAGA 59.412 40.000 3.05 0.00 0.00 2.87
1725 1837 6.094603 GCTTGATTCAGATTTAGCAGGAAGAA 59.905 38.462 3.05 0.00 0.00 2.52
1726 1838 7.201803 GCTTGATTCAGATTTAGCAGGAAGAAT 60.202 37.037 3.05 0.00 0.00 2.40
1727 1839 7.798596 TGATTCAGATTTAGCAGGAAGAATC 57.201 36.000 0.00 0.00 40.08 2.52
1728 1840 6.769822 TGATTCAGATTTAGCAGGAAGAATCC 59.230 38.462 0.00 0.00 46.98 3.01
1761 1878 4.039004 TGTTTGATTGGTGTGATTCCTTGG 59.961 41.667 0.00 0.00 0.00 3.61
1777 1894 3.454812 TCCTTGGTCTAATTACTGGGCTC 59.545 47.826 0.00 0.00 0.00 4.70
1972 2099 2.617532 GCCTCTCTGCAGGTGAATTTCT 60.618 50.000 15.13 0.00 35.72 2.52
1998 2127 0.737715 CAGGCTCTAACTCGTGTGCC 60.738 60.000 8.25 8.25 41.52 5.01
2045 2311 2.373502 TGACCATGTGTTGTATGGACCA 59.626 45.455 10.72 0.00 46.42 4.02
2046 2312 3.010027 TGACCATGTGTTGTATGGACCAT 59.990 43.478 12.67 12.67 46.42 3.55
2191 2464 9.730420 GTTTCTGCACTAGTCATTTCTTTTTAA 57.270 29.630 0.00 0.00 0.00 1.52
2223 2501 0.901124 CTGAACCCCCTCTCTCTGTG 59.099 60.000 0.00 0.00 0.00 3.66
2266 2544 1.135972 CATCCACGTTTTTCGGCTGAG 60.136 52.381 0.00 0.00 44.69 3.35
2439 2718 8.238631 TCATTTCATTGATGTCACATAGTGTTG 58.761 33.333 0.00 0.00 34.79 3.33
2458 2737 4.989797 TGTTGAACATGTGCAATGATTTCC 59.010 37.500 22.15 8.18 0.00 3.13
2585 2864 9.820229 GAAGTATACGAGATACAAAGAGAGATG 57.180 37.037 12.56 0.00 0.00 2.90
2700 2979 1.189752 TGTGCCATGGTGTTTGTTGT 58.810 45.000 14.67 0.00 0.00 3.32
2701 2980 1.552337 TGTGCCATGGTGTTTGTTGTT 59.448 42.857 14.67 0.00 0.00 2.83
2702 2981 1.932511 GTGCCATGGTGTTTGTTGTTG 59.067 47.619 14.67 0.00 0.00 3.33
2710 2989 1.140804 GTTTGTTGTTGCCGCCAGT 59.859 52.632 0.00 0.00 0.00 4.00
2730 3010 2.837291 CTCGCCTCCCTCCTCCTG 60.837 72.222 0.00 0.00 0.00 3.86
2753 3033 4.662961 CTCAGACGCCGTGGCACA 62.663 66.667 19.09 0.00 42.06 4.57
2795 3075 0.114560 AGGAAGGAGAAGGACACGGA 59.885 55.000 0.00 0.00 0.00 4.69
2798 3078 2.104170 GAAGGAGAAGGACACGGAGAT 58.896 52.381 0.00 0.00 0.00 2.75
2854 3141 0.035534 ACTCAGCACAACACCACACA 60.036 50.000 0.00 0.00 0.00 3.72
3213 4971 4.096732 GCTTATTAGCCCAACAGTGTTG 57.903 45.455 26.06 26.06 41.74 3.33
3214 4972 3.506067 GCTTATTAGCCCAACAGTGTTGT 59.494 43.478 29.28 16.75 41.74 3.32
3215 4973 4.379499 GCTTATTAGCCCAACAGTGTTGTC 60.379 45.833 29.28 21.34 41.74 3.18
3216 4974 1.975660 TTAGCCCAACAGTGTTGTCC 58.024 50.000 29.28 20.57 36.23 4.02
3217 4975 1.136828 TAGCCCAACAGTGTTGTCCT 58.863 50.000 29.28 25.09 36.23 3.85
3218 4976 1.136828 AGCCCAACAGTGTTGTCCTA 58.863 50.000 29.28 0.00 36.23 2.94
3219 4977 1.072331 AGCCCAACAGTGTTGTCCTAG 59.928 52.381 29.28 16.27 36.23 3.02
3418 5176 8.152023 ACAATTTCTCAGGGACTACTAAGATT 57.848 34.615 0.00 0.00 36.02 2.40
3450 5208 3.744660 ACTCCAACATTGACTCCTTGAC 58.255 45.455 0.00 0.00 0.00 3.18
3674 5432 8.089625 TCCCTGTATCTTCATCTTGTGAATTA 57.910 34.615 0.00 0.00 45.36 1.40
3727 5488 4.082463 CCACCTGCCGTGTAAATTTATGTT 60.082 41.667 0.31 0.00 41.26 2.71
3728 5489 5.092781 CACCTGCCGTGTAAATTTATGTTC 58.907 41.667 0.31 0.00 37.73 3.18
3729 5490 4.157105 ACCTGCCGTGTAAATTTATGTTCC 59.843 41.667 0.31 0.00 0.00 3.62
3730 5491 4.398044 CCTGCCGTGTAAATTTATGTTCCT 59.602 41.667 0.31 0.00 0.00 3.36
3732 5493 5.704888 TGCCGTGTAAATTTATGTTCCTTG 58.295 37.500 0.31 0.00 0.00 3.61
3733 5494 5.241949 TGCCGTGTAAATTTATGTTCCTTGT 59.758 36.000 0.31 0.00 0.00 3.16
3734 5495 6.430308 TGCCGTGTAAATTTATGTTCCTTGTA 59.570 34.615 0.31 0.00 0.00 2.41
3735 5496 6.744082 GCCGTGTAAATTTATGTTCCTTGTAC 59.256 38.462 0.31 0.00 0.00 2.90
3736 5497 7.361457 GCCGTGTAAATTTATGTTCCTTGTACT 60.361 37.037 0.31 0.00 0.00 2.73
3737 5498 8.173130 CCGTGTAAATTTATGTTCCTTGTACTC 58.827 37.037 0.31 0.00 0.00 2.59
3738 5499 8.173130 CGTGTAAATTTATGTTCCTTGTACTCC 58.827 37.037 0.31 0.00 0.00 3.85
3739 5500 9.227777 GTGTAAATTTATGTTCCTTGTACTCCT 57.772 33.333 0.31 0.00 0.00 3.69
3740 5501 9.444600 TGTAAATTTATGTTCCTTGTACTCCTC 57.555 33.333 0.31 0.00 0.00 3.71
3741 5502 9.668497 GTAAATTTATGTTCCTTGTACTCCTCT 57.332 33.333 0.31 0.00 0.00 3.69
3744 5505 9.838339 AATTTATGTTCCTTGTACTCCTCTATG 57.162 33.333 0.00 0.00 0.00 2.23
3745 5506 7.973048 TTATGTTCCTTGTACTCCTCTATGT 57.027 36.000 0.00 0.00 0.00 2.29
3746 5507 6.875972 ATGTTCCTTGTACTCCTCTATGTT 57.124 37.500 0.00 0.00 0.00 2.71
3747 5508 6.282199 TGTTCCTTGTACTCCTCTATGTTC 57.718 41.667 0.00 0.00 0.00 3.18
3750 5511 4.398358 TCCTTGTACTCCTCTATGTTCGTG 59.602 45.833 0.00 0.00 0.00 4.35
3752 5513 4.959596 TGTACTCCTCTATGTTCGTGTC 57.040 45.455 0.00 0.00 0.00 3.67
3783 5544 4.142271 ACTGAGACTGTGCTAGCTATGTTC 60.142 45.833 17.23 7.41 0.00 3.18
3787 5548 2.231478 ACTGTGCTAGCTATGTTCGTGT 59.769 45.455 17.23 0.00 0.00 4.49
3885 5646 5.329035 AGCATATCAAGCCGTTTCAAATT 57.671 34.783 0.00 0.00 0.00 1.82
3959 8640 2.037251 ACCACGTGTTCTAGCAAGTCAT 59.963 45.455 15.65 0.00 0.00 3.06
4021 8714 1.126488 ACATGAGATGATCCAGCCGT 58.874 50.000 0.00 0.00 0.00 5.68
4113 8807 4.100963 ACACATACAGAGTCAAGTCCACAA 59.899 41.667 0.00 0.00 0.00 3.33
4304 9020 3.371097 GAAGGCGGAGATGGCGTCA 62.371 63.158 9.78 0.00 41.38 4.35
4403 9119 1.416813 GAGGAGTGCGCTGAATCACG 61.417 60.000 3.44 1.89 38.19 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
212 213 3.008157 TCCAAGGTAGACGCAATAACCAA 59.992 43.478 0.00 0.00 34.29 3.67
292 293 2.434359 GGCGCGGTACTCTGCTTT 60.434 61.111 8.83 0.00 43.19 3.51
330 331 3.305709 CTGACGAAGCCAGGAACAA 57.694 52.632 0.00 0.00 0.00 2.83
610 612 3.055719 CGAAGCGGCACCATGGTT 61.056 61.111 16.84 0.00 0.00 3.67
799 802 4.084537 CGAATGACAACACTCAACAGGTAC 60.085 45.833 0.00 0.00 0.00 3.34
972 975 0.907230 GAAGCTCTCCCAGTCCCAGT 60.907 60.000 0.00 0.00 0.00 4.00
976 979 2.726351 CCCGAAGCTCTCCCAGTCC 61.726 68.421 0.00 0.00 0.00 3.85
977 980 2.726351 CCCCGAAGCTCTCCCAGTC 61.726 68.421 0.00 0.00 0.00 3.51
978 981 2.685380 CCCCGAAGCTCTCCCAGT 60.685 66.667 0.00 0.00 0.00 4.00
979 982 4.168291 GCCCCGAAGCTCTCCCAG 62.168 72.222 0.00 0.00 0.00 4.45
1088 1091 5.874093 AGGGAGGACTCTGCATAATAAATG 58.126 41.667 0.00 0.00 32.55 2.32
1096 1099 0.043940 AGGAAGGGAGGACTCTGCAT 59.956 55.000 0.00 0.00 32.55 3.96
1097 1100 0.616111 GAGGAAGGGAGGACTCTGCA 60.616 60.000 0.00 0.00 32.55 4.41
1098 1101 0.325203 AGAGGAAGGGAGGACTCTGC 60.325 60.000 0.00 0.00 38.76 4.26
1099 1102 2.107366 GAAGAGGAAGGGAGGACTCTG 58.893 57.143 0.00 0.00 40.01 3.35
1100 1103 1.007842 GGAAGAGGAAGGGAGGACTCT 59.992 57.143 0.00 0.00 41.77 3.24
1101 1104 1.007842 AGGAAGAGGAAGGGAGGACTC 59.992 57.143 0.00 0.00 0.00 3.36
1103 1106 1.491668 GAGGAAGAGGAAGGGAGGAC 58.508 60.000 0.00 0.00 0.00 3.85
1105 1108 0.692756 GGGAGGAAGAGGAAGGGAGG 60.693 65.000 0.00 0.00 0.00 4.30
1106 1109 1.045911 CGGGAGGAAGAGGAAGGGAG 61.046 65.000 0.00 0.00 0.00 4.30
1107 1110 1.001760 CGGGAGGAAGAGGAAGGGA 59.998 63.158 0.00 0.00 0.00 4.20
1108 1111 3.635510 CGGGAGGAAGAGGAAGGG 58.364 66.667 0.00 0.00 0.00 3.95
1120 1123 0.101399 CGATTCAGTGAGACCGGGAG 59.899 60.000 6.32 0.00 0.00 4.30
1121 1124 0.323087 TCGATTCAGTGAGACCGGGA 60.323 55.000 6.32 0.00 0.00 5.14
1122 1125 0.530744 TTCGATTCAGTGAGACCGGG 59.469 55.000 6.32 0.00 0.00 5.73
1124 1127 2.112522 CGATTCGATTCAGTGAGACCG 58.887 52.381 0.00 0.00 0.00 4.79
1125 1128 3.422417 TCGATTCGATTCAGTGAGACC 57.578 47.619 4.29 0.00 0.00 3.85
1127 1130 5.248870 TCATTCGATTCGATTCAGTGAGA 57.751 39.130 9.96 0.00 35.23 3.27
1128 1131 5.118357 GGATCATTCGATTCGATTCAGTGAG 59.882 44.000 9.96 0.00 35.23 3.51
1129 1132 4.984785 GGATCATTCGATTCGATTCAGTGA 59.015 41.667 9.96 9.62 35.23 3.41
1130 1133 4.746611 TGGATCATTCGATTCGATTCAGTG 59.253 41.667 9.96 4.90 35.23 3.66
1131 1134 4.948847 TGGATCATTCGATTCGATTCAGT 58.051 39.130 9.96 0.00 35.23 3.41
1132 1135 5.234972 TGTTGGATCATTCGATTCGATTCAG 59.765 40.000 9.96 0.89 35.23 3.02
1133 1136 5.115480 TGTTGGATCATTCGATTCGATTCA 58.885 37.500 9.96 0.00 35.23 2.57
1235 1250 2.885644 GTGCGTGATGACGGCGAT 60.886 61.111 16.62 0.00 46.20 4.58
1340 1355 1.544759 GGAAGGGGACGCAGAAGAAAA 60.545 52.381 0.00 0.00 0.00 2.29
1351 1366 0.969149 CTTTGGCAAAGGAAGGGGAC 59.031 55.000 28.23 0.00 34.85 4.46
1353 1368 1.260544 CTCTTTGGCAAAGGAAGGGG 58.739 55.000 33.00 10.51 39.01 4.79
1649 1761 5.712152 AAAAACACAGGGATTCTCATGAC 57.288 39.130 0.00 0.00 0.00 3.06
1674 1786 6.303021 GCAATTTGCTGGATCTTTCAAAAA 57.697 33.333 14.11 0.00 40.96 1.94
1675 1787 5.927954 GCAATTTGCTGGATCTTTCAAAA 57.072 34.783 14.11 0.00 40.96 2.44
1689 1801 2.671396 CTGAATCAAGCCAGCAATTTGC 59.329 45.455 13.55 13.55 45.46 3.68
1690 1802 4.182693 TCTGAATCAAGCCAGCAATTTG 57.817 40.909 0.00 0.00 0.00 2.32
1691 1803 5.416271 AATCTGAATCAAGCCAGCAATTT 57.584 34.783 0.00 0.00 0.00 1.82
1692 1804 5.416271 AAATCTGAATCAAGCCAGCAATT 57.584 34.783 0.00 0.00 0.00 2.32
1693 1805 5.451520 GCTAAATCTGAATCAAGCCAGCAAT 60.452 40.000 0.00 0.00 0.00 3.56
1694 1806 4.142315 GCTAAATCTGAATCAAGCCAGCAA 60.142 41.667 0.00 0.00 0.00 3.91
1695 1807 3.379372 GCTAAATCTGAATCAAGCCAGCA 59.621 43.478 0.00 0.00 0.00 4.41
1696 1808 3.379372 TGCTAAATCTGAATCAAGCCAGC 59.621 43.478 1.93 0.30 0.00 4.85
1697 1809 4.036498 CCTGCTAAATCTGAATCAAGCCAG 59.964 45.833 1.93 0.00 0.00 4.85
1698 1810 3.949754 CCTGCTAAATCTGAATCAAGCCA 59.050 43.478 1.93 0.00 0.00 4.75
1699 1811 4.202441 TCCTGCTAAATCTGAATCAAGCC 58.798 43.478 1.93 0.00 0.00 4.35
1700 1812 5.587844 TCTTCCTGCTAAATCTGAATCAAGC 59.412 40.000 0.00 0.00 0.00 4.01
1701 1813 7.621428 TTCTTCCTGCTAAATCTGAATCAAG 57.379 36.000 0.00 0.00 0.00 3.02
1702 1814 7.284034 GGATTCTTCCTGCTAAATCTGAATCAA 59.716 37.037 0.00 0.00 39.82 2.57
1703 1815 6.769822 GGATTCTTCCTGCTAAATCTGAATCA 59.230 38.462 0.00 0.00 39.82 2.57
1704 1816 6.206438 GGGATTCTTCCTGCTAAATCTGAATC 59.794 42.308 0.00 0.00 42.20 2.52
1705 1817 6.067350 GGGATTCTTCCTGCTAAATCTGAAT 58.933 40.000 0.00 0.00 42.20 2.57
1706 1818 5.192522 AGGGATTCTTCCTGCTAAATCTGAA 59.807 40.000 0.00 0.00 42.20 3.02
1707 1819 4.723789 AGGGATTCTTCCTGCTAAATCTGA 59.276 41.667 0.00 0.00 42.20 3.27
1708 1820 4.820716 CAGGGATTCTTCCTGCTAAATCTG 59.179 45.833 0.00 0.00 44.29 2.90
1709 1821 5.046288 CAGGGATTCTTCCTGCTAAATCT 57.954 43.478 0.00 0.00 44.29 2.40
1718 1830 5.520748 ACATAAACACAGGGATTCTTCCT 57.479 39.130 0.00 0.00 42.20 3.36
1719 1831 6.208599 TCAAACATAAACACAGGGATTCTTCC 59.791 38.462 0.00 0.00 41.77 3.46
1720 1832 7.214467 TCAAACATAAACACAGGGATTCTTC 57.786 36.000 0.00 0.00 0.00 2.87
1721 1833 7.781324 ATCAAACATAAACACAGGGATTCTT 57.219 32.000 0.00 0.00 0.00 2.52
1722 1834 7.309990 CCAATCAAACATAAACACAGGGATTCT 60.310 37.037 0.00 0.00 0.00 2.40
1723 1835 6.813152 CCAATCAAACATAAACACAGGGATTC 59.187 38.462 0.00 0.00 0.00 2.52
1724 1836 6.269769 ACCAATCAAACATAAACACAGGGATT 59.730 34.615 0.00 0.00 0.00 3.01
1725 1837 5.779771 ACCAATCAAACATAAACACAGGGAT 59.220 36.000 0.00 0.00 0.00 3.85
1726 1838 5.010516 CACCAATCAAACATAAACACAGGGA 59.989 40.000 0.00 0.00 0.00 4.20
1727 1839 5.221422 ACACCAATCAAACATAAACACAGGG 60.221 40.000 0.00 0.00 0.00 4.45
1728 1840 5.691305 CACACCAATCAAACATAAACACAGG 59.309 40.000 0.00 0.00 0.00 4.00
1729 1841 6.502652 TCACACCAATCAAACATAAACACAG 58.497 36.000 0.00 0.00 0.00 3.66
1730 1842 6.456795 TCACACCAATCAAACATAAACACA 57.543 33.333 0.00 0.00 0.00 3.72
1731 1843 7.116233 GGAATCACACCAATCAAACATAAACAC 59.884 37.037 0.00 0.00 0.00 3.32
1732 1844 7.015098 AGGAATCACACCAATCAAACATAAACA 59.985 33.333 0.00 0.00 0.00 2.83
1733 1845 7.378181 AGGAATCACACCAATCAAACATAAAC 58.622 34.615 0.00 0.00 0.00 2.01
1734 1846 7.537596 AGGAATCACACCAATCAAACATAAA 57.462 32.000 0.00 0.00 0.00 1.40
1735 1847 7.377398 CAAGGAATCACACCAATCAAACATAA 58.623 34.615 0.00 0.00 0.00 1.90
1736 1848 6.071447 CCAAGGAATCACACCAATCAAACATA 60.071 38.462 0.00 0.00 0.00 2.29
1737 1849 5.279607 CCAAGGAATCACACCAATCAAACAT 60.280 40.000 0.00 0.00 0.00 2.71
1761 1878 5.358160 AGCAAATTGAGCCCAGTAATTAGAC 59.642 40.000 0.00 0.00 0.00 2.59
1815 1942 0.910338 GTACTTGACCTTCCCCTCCC 59.090 60.000 0.00 0.00 0.00 4.30
1972 2099 1.134995 CGAGTTAGAGCCTGTGATGCA 60.135 52.381 0.00 0.00 0.00 3.96
1981 2109 0.458716 GAGGCACACGAGTTAGAGCC 60.459 60.000 4.25 4.25 42.31 4.70
1982 2110 0.458716 GGAGGCACACGAGTTAGAGC 60.459 60.000 0.00 0.00 0.00 4.09
1998 2127 5.184671 TCAATGAGGACTATCGATCATGGAG 59.815 44.000 0.00 0.00 32.85 3.86
2045 2311 7.698163 ACAATTCCAATCCCTAGTTCTCTAT 57.302 36.000 0.00 0.00 0.00 1.98
2046 2312 7.510675 AACAATTCCAATCCCTAGTTCTCTA 57.489 36.000 0.00 0.00 0.00 2.43
2191 2464 3.656264 GGGGGTTCAGGCCTAAGTATAAT 59.344 47.826 3.98 0.00 0.00 1.28
2223 2501 6.517605 TGGCCTTTCTAAAAACACCAATTAC 58.482 36.000 3.32 0.00 0.00 1.89
2266 2544 2.851195 TGCTTGTTCTTCTCCAGGTTC 58.149 47.619 0.00 0.00 0.00 3.62
2396 2674 2.672961 TGAGAAGGACACGGCATTAG 57.327 50.000 0.00 0.00 0.00 1.73
2439 2718 4.082081 TCCAGGAAATCATTGCACATGTTC 60.082 41.667 0.00 0.00 0.00 3.18
2518 2797 7.170965 ACCACACATTTCACTTCTATCAGAAT 58.829 34.615 0.00 0.00 33.13 2.40
2585 2864 3.077359 ACAGCTAGATTGCAGTTGGAAC 58.923 45.455 0.00 0.00 34.99 3.62
2645 2924 5.356291 AAGATCAGATCTCAAAGAGGGTG 57.644 43.478 13.63 0.00 39.08 4.61
2710 2989 4.144727 GAGGAGGGAGGCGAGGGA 62.145 72.222 0.00 0.00 0.00 4.20
2730 3010 3.444805 ACGGCGTCTGAGAGAGCC 61.445 66.667 6.77 16.26 45.67 4.70
2753 3033 5.611374 TCTGATCTTCTTCTTCGTTGGTTT 58.389 37.500 0.00 0.00 0.00 3.27
2854 3141 2.009774 GCTGCGGTGATCATTGTAAGT 58.990 47.619 0.00 0.00 0.00 2.24
3209 4967 3.630312 GCCAGTTCAAAACTAGGACAACA 59.370 43.478 10.52 0.00 40.46 3.33
3210 4968 3.630312 TGCCAGTTCAAAACTAGGACAAC 59.370 43.478 10.52 0.00 40.46 3.32
3212 4970 3.569194 TGCCAGTTCAAAACTAGGACA 57.431 42.857 10.52 6.79 40.46 4.02
3213 4971 6.569179 TTAATGCCAGTTCAAAACTAGGAC 57.431 37.500 10.52 5.11 40.46 3.85
3214 4972 5.183140 GCTTAATGCCAGTTCAAAACTAGGA 59.817 40.000 10.52 0.00 40.46 2.94
3215 4973 5.183904 AGCTTAATGCCAGTTCAAAACTAGG 59.816 40.000 0.00 0.00 44.23 3.02
3216 4974 6.072508 TCAGCTTAATGCCAGTTCAAAACTAG 60.073 38.462 0.00 0.00 44.23 2.57
3217 4975 5.767665 TCAGCTTAATGCCAGTTCAAAACTA 59.232 36.000 0.00 0.00 44.23 2.24
3218 4976 4.584325 TCAGCTTAATGCCAGTTCAAAACT 59.416 37.500 0.00 0.00 44.23 2.66
3219 4977 4.870363 TCAGCTTAATGCCAGTTCAAAAC 58.130 39.130 0.00 0.00 44.23 2.43
3418 5176 8.367660 AGTCAATGTTGGAGTCTAGATTCTTA 57.632 34.615 14.22 2.59 0.00 2.10
3450 5208 1.949847 ATCTTCCGTGAGCCTCACCG 61.950 60.000 18.79 12.66 44.20 4.94
3674 5432 3.627577 GCACATGTTCTTATTCACGGGAT 59.372 43.478 0.00 0.00 0.00 3.85
3727 5488 4.398358 CACGAACATAGAGGAGTACAAGGA 59.602 45.833 0.00 0.00 0.00 3.36
3728 5489 4.158025 ACACGAACATAGAGGAGTACAAGG 59.842 45.833 0.00 0.00 0.00 3.61
3729 5490 5.106277 TGACACGAACATAGAGGAGTACAAG 60.106 44.000 0.00 0.00 0.00 3.16
3730 5491 4.763279 TGACACGAACATAGAGGAGTACAA 59.237 41.667 0.00 0.00 0.00 2.41
3732 5493 4.155462 TGTGACACGAACATAGAGGAGTAC 59.845 45.833 0.22 0.00 0.00 2.73
3733 5494 4.329392 TGTGACACGAACATAGAGGAGTA 58.671 43.478 0.22 0.00 0.00 2.59
3734 5495 3.154710 TGTGACACGAACATAGAGGAGT 58.845 45.455 0.22 0.00 0.00 3.85
3735 5496 3.440522 TCTGTGACACGAACATAGAGGAG 59.559 47.826 0.22 0.00 32.32 3.69
3736 5497 3.418047 TCTGTGACACGAACATAGAGGA 58.582 45.455 0.22 0.00 32.32 3.71
3737 5498 3.850122 TCTGTGACACGAACATAGAGG 57.150 47.619 0.22 0.00 32.32 3.69
3738 5499 4.854291 GTCTTCTGTGACACGAACATAGAG 59.146 45.833 0.22 0.00 36.98 2.43
3739 5500 4.519350 AGTCTTCTGTGACACGAACATAGA 59.481 41.667 0.22 0.00 39.27 1.98
3740 5501 4.618912 CAGTCTTCTGTGACACGAACATAG 59.381 45.833 0.22 0.00 39.27 2.23
3741 5502 4.277423 TCAGTCTTCTGTGACACGAACATA 59.723 41.667 0.22 0.00 41.91 2.29
3742 5503 3.068165 TCAGTCTTCTGTGACACGAACAT 59.932 43.478 0.22 0.00 41.91 2.71
3743 5504 2.425668 TCAGTCTTCTGTGACACGAACA 59.574 45.455 0.22 0.00 41.91 3.18
3744 5505 3.046390 CTCAGTCTTCTGTGACACGAAC 58.954 50.000 0.22 0.00 41.91 3.95
3745 5506 2.949644 TCTCAGTCTTCTGTGACACGAA 59.050 45.455 0.22 6.86 41.91 3.85
3746 5507 2.572290 TCTCAGTCTTCTGTGACACGA 58.428 47.619 0.22 0.00 41.91 4.35
3783 5544 2.608546 CCGGTAAGACTAGAGAGACACG 59.391 54.545 0.00 0.00 0.00 4.49
3787 5548 3.648507 AAGCCGGTAAGACTAGAGAGA 57.351 47.619 1.90 0.00 0.00 3.10
3817 5578 5.523438 ACATTTTCCAACGGTGTAATTGT 57.477 34.783 0.00 3.72 0.00 2.71
3895 5656 7.707104 AGATAGGAGTGTTTTTCTTGTTGTTG 58.293 34.615 0.00 0.00 0.00 3.33
3898 5659 8.017946 GCTTAGATAGGAGTGTTTTTCTTGTTG 58.982 37.037 0.00 0.00 0.00 3.33
4021 8714 2.733956 GGTAATGTCCCTTCATGGCAA 58.266 47.619 0.00 0.00 0.00 4.52
4113 8807 1.373590 GACTTGGGTGTGTGCGTGTT 61.374 55.000 0.00 0.00 0.00 3.32
4195 8902 3.103911 CGTCCGGCGTGTTCTGTC 61.104 66.667 6.01 0.00 35.54 3.51
4196 8903 3.141522 TTCGTCCGGCGTGTTCTGT 62.142 57.895 16.00 0.00 42.13 3.41
4403 9119 1.291132 GGACTGTCCGCAATAAGCTC 58.709 55.000 11.71 0.00 42.61 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.