Multiple sequence alignment - TraesCS3B01G251900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G251900 chr3B 100.000 3262 0 0 1 3262 404621754 404625015 0.000000e+00 6024.0
1 TraesCS3B01G251900 chr3B 93.023 43 2 1 678 719 509899551 509899593 9.770000e-06 62.1
2 TraesCS3B01G251900 chr3A 93.609 2535 84 24 772 3262 414202284 414199784 0.000000e+00 3712.0
3 TraesCS3B01G251900 chr3A 86.938 467 46 8 233 690 414202763 414202303 8.070000e-141 510.0
4 TraesCS3B01G251900 chr3D 95.588 2244 50 21 781 2993 315756913 315754688 0.000000e+00 3550.0
5 TraesCS3B01G251900 chr3D 95.455 286 11 1 2979 3262 315746921 315746636 3.840000e-124 455.0
6 TraesCS3B01G251900 chr3D 86.232 414 45 8 279 684 315757596 315757187 3.860000e-119 438.0
7 TraesCS3B01G251900 chr4B 88.362 232 16 9 1 231 565731533 565731312 5.360000e-68 268.0
8 TraesCS3B01G251900 chr4B 87.013 231 20 4 1 231 656450837 656450617 5.400000e-63 252.0
9 TraesCS3B01G251900 chr4D 87.554 233 25 4 1 232 446111044 446111273 1.930000e-67 267.0
10 TraesCS3B01G251900 chr4D 86.957 230 18 9 3 231 49299953 49299735 6.990000e-62 248.0
11 TraesCS3B01G251900 chr2B 87.234 235 22 8 1 231 237591514 237591744 8.980000e-66 261.0
12 TraesCS3B01G251900 chr2B 87.069 232 18 9 1 231 734222606 734222826 5.400000e-63 252.0
13 TraesCS3B01G251900 chr6B 87.234 235 20 9 1 231 1568516 1568288 3.230000e-65 259.0
14 TraesCS3B01G251900 chr7A 86.695 233 23 7 4 231 648893024 648892795 5.400000e-63 252.0
15 TraesCS3B01G251900 chr7A 95.455 44 2 0 352 395 595995000 595995043 1.620000e-08 71.3
16 TraesCS3B01G251900 chr5B 86.250 240 21 4 1 238 697235862 697235633 1.940000e-62 250.0
17 TraesCS3B01G251900 chr7B 80.749 187 29 6 398 581 747366680 747366862 4.390000e-29 139.0
18 TraesCS3B01G251900 chr7B 90.909 44 4 0 352 395 568495307 568495264 3.510000e-05 60.2
19 TraesCS3B01G251900 chr1A 81.818 121 18 2 437 557 329544461 329544345 7.450000e-17 99.0
20 TraesCS3B01G251900 chr5D 88.136 59 6 1 337 395 561558854 561558797 5.840000e-08 69.4
21 TraesCS3B01G251900 chr7D 100.000 36 0 0 684 719 199530090 199530125 2.100000e-07 67.6
22 TraesCS3B01G251900 chr2A 94.737 38 2 0 687 724 709691199 709691162 3.510000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G251900 chr3B 404621754 404625015 3261 False 6024 6024 100.0000 1 3262 1 chr3B.!!$F1 3261
1 TraesCS3B01G251900 chr3A 414199784 414202763 2979 True 2111 3712 90.2735 233 3262 2 chr3A.!!$R1 3029
2 TraesCS3B01G251900 chr3D 315754688 315757596 2908 True 1994 3550 90.9100 279 2993 2 chr3D.!!$R2 2714

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
137 138 0.106918 AAAACTCCCAGGTTGCGACA 60.107 50.0 6.39 0.00 0.00 4.35 F
713 724 0.179171 TAGTACAGACGCAAGCGCTC 60.179 55.0 12.06 11.06 44.19 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2071 2321 1.294780 CTCCTCTTCGTTGCTGGCT 59.705 57.895 0.0 0.0 0.00 4.75 R
2682 2933 0.665369 CCGTTCGCCAAAGTACGAGT 60.665 55.000 0.0 0.0 39.81 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.907207 TGGGATCTAGTTTTGAAGATCTCG 58.093 41.667 11.05 0.00 40.21 4.04
24 25 5.656859 TGGGATCTAGTTTTGAAGATCTCGA 59.343 40.000 11.05 0.00 40.21 4.04
25 26 5.980715 GGGATCTAGTTTTGAAGATCTCGAC 59.019 44.000 11.05 0.00 37.77 4.20
26 27 6.405953 GGGATCTAGTTTTGAAGATCTCGACA 60.406 42.308 11.05 0.00 37.77 4.35
27 28 6.474102 GGATCTAGTTTTGAAGATCTCGACAC 59.526 42.308 11.05 0.00 37.77 3.67
28 29 5.391449 TCTAGTTTTGAAGATCTCGACACG 58.609 41.667 0.00 0.00 0.00 4.49
29 30 4.238761 AGTTTTGAAGATCTCGACACGA 57.761 40.909 0.00 0.00 0.00 4.35
39 40 3.806591 TCGACACGAGGAATCCAAC 57.193 52.632 0.61 0.00 0.00 3.77
40 41 0.109458 TCGACACGAGGAATCCAACG 60.109 55.000 14.89 14.89 0.00 4.10
41 42 1.076533 CGACACGAGGAATCCAACGG 61.077 60.000 18.99 12.15 32.22 4.44
42 43 1.359459 GACACGAGGAATCCAACGGC 61.359 60.000 18.99 7.85 32.22 5.68
43 44 2.125673 ACGAGGAATCCAACGGCG 60.126 61.111 18.99 4.80 32.22 6.46
44 45 2.183300 CGAGGAATCCAACGGCGA 59.817 61.111 16.62 0.00 0.00 5.54
45 46 1.447140 CGAGGAATCCAACGGCGAA 60.447 57.895 16.62 0.00 0.00 4.70
46 47 1.017177 CGAGGAATCCAACGGCGAAA 61.017 55.000 16.62 0.00 0.00 3.46
47 48 1.161843 GAGGAATCCAACGGCGAAAA 58.838 50.000 16.62 0.00 0.00 2.29
48 49 1.130561 GAGGAATCCAACGGCGAAAAG 59.869 52.381 16.62 0.00 0.00 2.27
63 64 2.851534 GAAAAGCGGTTCGAGATTTGG 58.148 47.619 0.00 0.00 0.00 3.28
64 65 2.178912 AAAGCGGTTCGAGATTTGGA 57.821 45.000 0.00 0.00 0.00 3.53
65 66 1.439679 AAGCGGTTCGAGATTTGGAC 58.560 50.000 0.00 0.00 0.00 4.02
66 67 0.736325 AGCGGTTCGAGATTTGGACG 60.736 55.000 0.00 0.00 0.00 4.79
67 68 1.708027 CGGTTCGAGATTTGGACGC 59.292 57.895 0.00 0.00 0.00 5.19
68 69 1.011968 CGGTTCGAGATTTGGACGCA 61.012 55.000 0.00 0.00 0.00 5.24
69 70 1.369625 GGTTCGAGATTTGGACGCAT 58.630 50.000 0.00 0.00 0.00 4.73
70 71 1.062587 GGTTCGAGATTTGGACGCATG 59.937 52.381 0.00 0.00 0.00 4.06
71 72 1.062587 GTTCGAGATTTGGACGCATGG 59.937 52.381 0.00 0.00 0.00 3.66
72 73 0.249120 TCGAGATTTGGACGCATGGT 59.751 50.000 0.00 0.00 0.00 3.55
73 74 1.086696 CGAGATTTGGACGCATGGTT 58.913 50.000 0.00 0.00 0.00 3.67
74 75 1.468520 CGAGATTTGGACGCATGGTTT 59.531 47.619 0.00 0.00 0.00 3.27
75 76 2.675844 CGAGATTTGGACGCATGGTTTA 59.324 45.455 0.00 0.00 0.00 2.01
76 77 3.126171 CGAGATTTGGACGCATGGTTTAA 59.874 43.478 0.00 0.00 0.00 1.52
77 78 4.662145 GAGATTTGGACGCATGGTTTAAG 58.338 43.478 0.00 0.00 0.00 1.85
78 79 4.331968 AGATTTGGACGCATGGTTTAAGA 58.668 39.130 0.00 0.00 0.00 2.10
79 80 4.396166 AGATTTGGACGCATGGTTTAAGAG 59.604 41.667 0.00 0.00 0.00 2.85
80 81 3.410631 TTGGACGCATGGTTTAAGAGA 57.589 42.857 0.00 0.00 0.00 3.10
81 82 3.627395 TGGACGCATGGTTTAAGAGAT 57.373 42.857 0.00 0.00 0.00 2.75
82 83 4.746535 TGGACGCATGGTTTAAGAGATA 57.253 40.909 0.00 0.00 0.00 1.98
83 84 5.092554 TGGACGCATGGTTTAAGAGATAA 57.907 39.130 0.00 0.00 0.00 1.75
84 85 5.492895 TGGACGCATGGTTTAAGAGATAAA 58.507 37.500 0.00 0.00 0.00 1.40
85 86 5.941058 TGGACGCATGGTTTAAGAGATAAAA 59.059 36.000 0.00 0.00 35.33 1.52
86 87 6.128117 TGGACGCATGGTTTAAGAGATAAAAC 60.128 38.462 0.00 0.00 40.87 2.43
87 88 5.864986 ACGCATGGTTTAAGAGATAAAACG 58.135 37.500 0.00 0.00 42.96 3.60
88 89 5.410439 ACGCATGGTTTAAGAGATAAAACGT 59.590 36.000 0.00 0.00 42.96 3.99
89 90 6.072893 ACGCATGGTTTAAGAGATAAAACGTT 60.073 34.615 0.00 0.00 42.96 3.99
90 91 6.799925 CGCATGGTTTAAGAGATAAAACGTTT 59.200 34.615 7.96 7.96 42.96 3.60
91 92 7.325097 CGCATGGTTTAAGAGATAAAACGTTTT 59.675 33.333 27.65 27.65 42.96 2.43
92 93 8.424731 GCATGGTTTAAGAGATAAAACGTTTTG 58.575 33.333 31.26 13.67 42.96 2.44
93 94 9.672086 CATGGTTTAAGAGATAAAACGTTTTGA 57.328 29.630 31.26 17.70 42.96 2.69
109 110 6.321873 CGTTTTGAATAAACGGATCTACGA 57.678 37.500 13.31 0.00 46.39 3.43
110 111 6.754206 CGTTTTGAATAAACGGATCTACGAA 58.246 36.000 13.31 0.00 46.39 3.85
111 112 7.228840 CGTTTTGAATAAACGGATCTACGAAA 58.771 34.615 13.31 0.00 46.39 3.46
112 113 7.741216 CGTTTTGAATAAACGGATCTACGAAAA 59.259 33.333 13.31 0.00 46.39 2.29
113 114 9.384682 GTTTTGAATAAACGGATCTACGAAAAA 57.615 29.630 0.00 0.00 37.61 1.94
132 133 5.607939 AAAAAGGTAAAACTCCCAGGTTG 57.392 39.130 0.00 0.00 0.00 3.77
133 134 2.287977 AGGTAAAACTCCCAGGTTGC 57.712 50.000 0.00 0.00 0.00 4.17
134 135 0.879090 GGTAAAACTCCCAGGTTGCG 59.121 55.000 0.00 0.00 0.00 4.85
135 136 1.543871 GGTAAAACTCCCAGGTTGCGA 60.544 52.381 0.00 0.00 0.00 5.10
136 137 1.534163 GTAAAACTCCCAGGTTGCGAC 59.466 52.381 0.00 0.00 0.00 5.19
137 138 0.106918 AAAACTCCCAGGTTGCGACA 60.107 50.000 6.39 0.00 0.00 4.35
138 139 0.106918 AAACTCCCAGGTTGCGACAA 60.107 50.000 6.39 0.00 0.00 3.18
139 140 0.535102 AACTCCCAGGTTGCGACAAG 60.535 55.000 6.39 0.00 0.00 3.16
140 141 1.071471 CTCCCAGGTTGCGACAAGT 59.929 57.895 6.39 0.00 0.00 3.16
141 142 1.227823 TCCCAGGTTGCGACAAGTG 60.228 57.895 6.39 0.00 0.00 3.16
142 143 2.260869 CCCAGGTTGCGACAAGTGG 61.261 63.158 6.39 9.17 0.00 4.00
143 144 2.639286 CAGGTTGCGACAAGTGGC 59.361 61.111 6.39 0.00 34.76 5.01
144 145 1.893808 CAGGTTGCGACAAGTGGCT 60.894 57.895 6.39 0.00 35.25 4.75
145 146 1.598130 AGGTTGCGACAAGTGGCTC 60.598 57.895 6.39 2.47 35.25 4.70
146 147 1.891919 GGTTGCGACAAGTGGCTCA 60.892 57.895 6.39 0.00 35.25 4.26
147 148 1.279840 GTTGCGACAAGTGGCTCAC 59.720 57.895 8.60 2.32 35.25 3.51
149 150 1.159713 TTGCGACAAGTGGCTCACTG 61.160 55.000 8.60 6.10 44.62 3.66
150 151 2.320587 GCGACAAGTGGCTCACTGG 61.321 63.158 8.37 8.10 44.62 4.00
151 152 1.367471 CGACAAGTGGCTCACTGGA 59.633 57.895 14.48 0.00 44.62 3.86
152 153 0.946221 CGACAAGTGGCTCACTGGAC 60.946 60.000 14.48 8.72 44.62 4.02
153 154 0.946221 GACAAGTGGCTCACTGGACG 60.946 60.000 14.48 5.28 44.62 4.79
154 155 2.031163 AAGTGGCTCACTGGACGC 59.969 61.111 8.37 0.00 44.62 5.19
155 156 2.807107 AAGTGGCTCACTGGACGCA 61.807 57.895 8.37 0.00 44.62 5.24
156 157 2.996168 AAGTGGCTCACTGGACGCAC 62.996 60.000 8.37 0.00 44.62 5.34
157 158 3.545574 TGGCTCACTGGACGCACA 61.546 61.111 0.00 0.00 0.00 4.57
158 159 2.046892 GGCTCACTGGACGCACAT 60.047 61.111 0.00 0.00 0.00 3.21
159 160 2.393768 GGCTCACTGGACGCACATG 61.394 63.158 0.00 0.00 0.00 3.21
160 161 3.031964 GCTCACTGGACGCACATGC 62.032 63.158 0.00 0.00 37.78 4.06
161 162 1.668793 CTCACTGGACGCACATGCA 60.669 57.895 4.49 0.00 42.21 3.96
162 163 1.632948 CTCACTGGACGCACATGCAG 61.633 60.000 4.49 0.34 43.26 4.41
163 164 3.052082 ACTGGACGCACATGCAGC 61.052 61.111 4.49 0.00 41.47 5.25
170 171 4.876081 GCACATGCAGCGCGCTAC 62.876 66.667 36.02 29.88 43.06 3.58
171 172 3.190849 CACATGCAGCGCGCTACT 61.191 61.111 36.02 18.41 43.06 2.57
172 173 2.434884 ACATGCAGCGCGCTACTT 60.435 55.556 36.02 23.89 43.06 2.24
173 174 2.022346 CATGCAGCGCGCTACTTG 59.978 61.111 36.02 30.41 43.06 3.16
174 175 2.434884 ATGCAGCGCGCTACTTGT 60.435 55.556 36.02 15.61 43.06 3.16
175 176 2.456119 ATGCAGCGCGCTACTTGTC 61.456 57.895 36.02 17.70 43.06 3.18
176 177 4.196826 GCAGCGCGCTACTTGTCG 62.197 66.667 36.02 20.71 37.77 4.35
177 178 4.196826 CAGCGCGCTACTTGTCGC 62.197 66.667 36.02 0.00 46.98 5.19
182 183 4.261888 CGCTACTTGTCGCAACCT 57.738 55.556 0.00 0.00 0.00 3.50
183 184 1.781555 CGCTACTTGTCGCAACCTG 59.218 57.895 0.00 0.00 0.00 4.00
184 185 1.626654 CGCTACTTGTCGCAACCTGG 61.627 60.000 0.00 0.00 0.00 4.45
185 186 1.298859 GCTACTTGTCGCAACCTGGG 61.299 60.000 0.00 0.00 0.00 4.45
186 187 0.673644 CTACTTGTCGCAACCTGGGG 60.674 60.000 0.00 0.00 0.00 4.96
187 188 1.122632 TACTTGTCGCAACCTGGGGA 61.123 55.000 0.00 0.00 0.00 4.81
188 189 1.228124 CTTGTCGCAACCTGGGGAA 60.228 57.895 0.00 0.00 0.00 3.97
189 190 1.515521 CTTGTCGCAACCTGGGGAAC 61.516 60.000 0.00 0.00 0.00 3.62
190 191 1.990160 TTGTCGCAACCTGGGGAACT 61.990 55.000 0.00 0.00 0.00 3.01
191 192 1.966451 GTCGCAACCTGGGGAACTG 60.966 63.158 0.00 0.00 0.00 3.16
192 193 2.672996 CGCAACCTGGGGAACTGG 60.673 66.667 0.00 0.00 43.37 4.00
193 194 2.843545 GCAACCTGGGGAACTGGA 59.156 61.111 0.00 0.00 40.42 3.86
194 195 1.152830 GCAACCTGGGGAACTGGAA 59.847 57.895 0.00 0.00 40.42 3.53
195 196 0.251787 GCAACCTGGGGAACTGGAAT 60.252 55.000 0.00 0.00 40.42 3.01
196 197 1.549203 CAACCTGGGGAACTGGAATG 58.451 55.000 0.00 0.00 40.42 2.67
197 198 1.075374 CAACCTGGGGAACTGGAATGA 59.925 52.381 0.00 0.00 40.42 2.57
198 199 1.686236 ACCTGGGGAACTGGAATGAT 58.314 50.000 0.00 0.00 40.42 2.45
199 200 1.566231 ACCTGGGGAACTGGAATGATC 59.434 52.381 0.00 0.00 40.42 2.92
200 201 1.849039 CCTGGGGAACTGGAATGATCT 59.151 52.381 0.00 0.00 40.42 2.75
201 202 2.243221 CCTGGGGAACTGGAATGATCTT 59.757 50.000 0.00 0.00 40.42 2.40
202 203 3.549794 CTGGGGAACTGGAATGATCTTC 58.450 50.000 0.00 0.00 0.00 2.87
203 204 2.092968 TGGGGAACTGGAATGATCTTCG 60.093 50.000 0.00 0.00 0.00 3.79
204 205 1.943340 GGGAACTGGAATGATCTTCGC 59.057 52.381 0.00 0.00 0.00 4.70
205 206 1.594862 GGAACTGGAATGATCTTCGCG 59.405 52.381 0.00 0.00 0.00 5.87
206 207 2.540515 GAACTGGAATGATCTTCGCGA 58.459 47.619 3.71 3.71 0.00 5.87
207 208 1.927895 ACTGGAATGATCTTCGCGAC 58.072 50.000 9.15 0.00 0.00 5.19
208 209 0.848942 CTGGAATGATCTTCGCGACG 59.151 55.000 9.15 7.49 0.00 5.12
209 210 0.454196 TGGAATGATCTTCGCGACGA 59.546 50.000 18.12 18.12 0.00 4.20
210 211 1.124462 GGAATGATCTTCGCGACGAG 58.876 55.000 20.35 11.37 37.14 4.18
211 212 1.534175 GGAATGATCTTCGCGACGAGT 60.534 52.381 20.35 9.01 37.14 4.18
212 213 2.286831 GGAATGATCTTCGCGACGAGTA 60.287 50.000 20.35 11.96 37.14 2.59
213 214 2.386501 ATGATCTTCGCGACGAGTAC 57.613 50.000 20.35 13.95 37.14 2.73
214 215 1.366679 TGATCTTCGCGACGAGTACT 58.633 50.000 20.35 3.76 37.14 2.73
215 216 1.326852 TGATCTTCGCGACGAGTACTC 59.673 52.381 20.35 13.18 37.14 2.59
216 217 0.656785 ATCTTCGCGACGAGTACTCC 59.343 55.000 20.35 3.24 37.14 3.85
217 218 0.390866 TCTTCGCGACGAGTACTCCT 60.391 55.000 17.23 5.65 37.14 3.69
218 219 0.447011 CTTCGCGACGAGTACTCCTT 59.553 55.000 17.23 4.29 37.14 3.36
219 220 1.662629 CTTCGCGACGAGTACTCCTTA 59.337 52.381 17.23 0.00 37.14 2.69
220 221 1.725641 TCGCGACGAGTACTCCTTAA 58.274 50.000 17.23 0.00 0.00 1.85
221 222 1.394917 TCGCGACGAGTACTCCTTAAC 59.605 52.381 17.23 2.78 0.00 2.01
222 223 1.396301 CGCGACGAGTACTCCTTAACT 59.604 52.381 17.23 0.00 0.00 2.24
223 224 2.604914 CGCGACGAGTACTCCTTAACTA 59.395 50.000 17.23 0.00 0.00 2.24
224 225 3.302350 CGCGACGAGTACTCCTTAACTAG 60.302 52.174 17.23 3.13 0.00 2.57
225 226 3.620821 GCGACGAGTACTCCTTAACTAGT 59.379 47.826 17.23 6.41 34.76 2.57
226 227 4.493872 GCGACGAGTACTCCTTAACTAGTG 60.494 50.000 17.23 1.71 32.62 2.74
227 228 4.867047 CGACGAGTACTCCTTAACTAGTGA 59.133 45.833 17.23 0.00 32.62 3.41
228 229 5.523188 CGACGAGTACTCCTTAACTAGTGAT 59.477 44.000 17.23 0.00 32.62 3.06
229 230 6.036953 CGACGAGTACTCCTTAACTAGTGATT 59.963 42.308 17.23 0.00 32.62 2.57
230 231 7.413877 CGACGAGTACTCCTTAACTAGTGATTT 60.414 40.741 17.23 0.00 32.62 2.17
231 232 8.120140 ACGAGTACTCCTTAACTAGTGATTTT 57.880 34.615 17.23 0.00 31.48 1.82
232 233 9.236006 ACGAGTACTCCTTAACTAGTGATTTTA 57.764 33.333 17.23 0.00 31.48 1.52
248 249 7.508687 AGTGATTTTAAAAATTGGCTCCTTGT 58.491 30.769 4.44 0.00 0.00 3.16
253 254 9.620259 ATTTTAAAAATTGGCTCCTTGTACAAA 57.380 25.926 10.03 0.00 0.00 2.83
288 289 4.404715 TGCTCTCCATAGGTGTAAGGTTAC 59.595 45.833 0.00 0.00 0.00 2.50
302 303 5.493250 TGTAAGGTTACACCATAGGGGAATT 59.507 40.000 0.00 0.00 41.95 2.17
322 323 1.796796 GAGCGATTGGTTGGTGCTC 59.203 57.895 0.00 0.00 44.37 4.26
339 340 4.495844 GGTGCTCACAAACTAAACACTGAC 60.496 45.833 2.21 0.00 0.00 3.51
391 392 5.046591 TGTTAGTAGTGGGGATCAACTTCTG 60.047 44.000 10.08 0.00 0.00 3.02
394 395 3.710209 AGTGGGGATCAACTTCTGAAG 57.290 47.619 15.59 15.59 37.67 3.02
406 414 5.544176 TCAACTTCTGAAGGGATGACTACTT 59.456 40.000 20.61 0.23 0.00 2.24
407 415 5.413309 ACTTCTGAAGGGATGACTACTTG 57.587 43.478 20.61 0.00 0.00 3.16
409 417 5.544176 ACTTCTGAAGGGATGACTACTTGAA 59.456 40.000 20.61 0.00 0.00 2.69
410 418 6.214412 ACTTCTGAAGGGATGACTACTTGAAT 59.786 38.462 20.61 0.00 0.00 2.57
419 427 5.637810 GGATGACTACTTGAATGTTGTTCGA 59.362 40.000 0.00 0.00 0.00 3.71
427 435 5.006746 ACTTGAATGTTGTTCGACTCAAGAC 59.993 40.000 19.68 0.00 41.36 3.01
433 441 7.757097 ATGTTGTTCGACTCAAGACATATAC 57.243 36.000 2.96 0.00 0.00 1.47
516 525 3.765026 CCGAAATTCAAAACGGTATGGG 58.235 45.455 0.00 0.00 40.42 4.00
517 526 3.428316 CCGAAATTCAAAACGGTATGGGG 60.428 47.826 0.00 0.00 40.42 4.96
532 541 6.443849 ACGGTATGGGGAGTTCATATCATAAT 59.556 38.462 0.00 0.00 29.93 1.28
535 544 7.934120 GGTATGGGGAGTTCATATCATAATAGC 59.066 40.741 0.00 0.00 30.72 2.97
540 549 7.606456 GGGGAGTTCATATCATAATAGCGAAAA 59.394 37.037 0.00 0.00 0.00 2.29
541 550 9.167311 GGGAGTTCATATCATAATAGCGAAAAT 57.833 33.333 0.00 0.00 0.00 1.82
596 605 6.315144 GGTTTGGTTTTAGAATGCACAAAGTT 59.685 34.615 0.00 0.00 0.00 2.66
666 677 5.236263 GGAAGAAATTTTGTTCCGTTGCAAT 59.764 36.000 18.90 0.00 42.31 3.56
671 682 0.457443 TTGTTCCGTTGCAATGCACA 59.543 45.000 7.72 14.17 38.71 4.57
673 684 0.664166 GTTCCGTTGCAATGCACAGG 60.664 55.000 18.39 18.39 38.71 4.00
674 685 1.106351 TTCCGTTGCAATGCACAGGT 61.106 50.000 21.91 0.00 38.71 4.00
675 686 0.250510 TCCGTTGCAATGCACAGGTA 60.251 50.000 21.91 10.49 38.71 3.08
676 687 0.810648 CCGTTGCAATGCACAGGTAT 59.189 50.000 7.72 0.00 38.71 2.73
677 688 2.013400 CCGTTGCAATGCACAGGTATA 58.987 47.619 7.72 0.00 38.71 1.47
678 689 2.618241 CCGTTGCAATGCACAGGTATAT 59.382 45.455 7.72 0.00 38.71 0.86
679 690 3.066621 CCGTTGCAATGCACAGGTATATT 59.933 43.478 7.72 0.00 38.71 1.28
680 691 4.439974 CCGTTGCAATGCACAGGTATATTT 60.440 41.667 7.72 0.00 38.71 1.40
681 692 4.500117 CGTTGCAATGCACAGGTATATTTG 59.500 41.667 7.72 0.00 38.71 2.32
682 693 4.044336 TGCAATGCACAGGTATATTTGC 57.956 40.909 2.72 8.54 31.71 3.68
683 694 3.700539 TGCAATGCACAGGTATATTTGCT 59.299 39.130 2.72 0.00 35.91 3.91
684 695 4.160065 TGCAATGCACAGGTATATTTGCTT 59.840 37.500 2.72 0.00 35.91 3.91
685 696 5.111293 GCAATGCACAGGTATATTTGCTTT 58.889 37.500 0.00 0.00 35.91 3.51
686 697 5.581874 GCAATGCACAGGTATATTTGCTTTT 59.418 36.000 0.00 0.00 35.91 2.27
687 698 6.092533 GCAATGCACAGGTATATTTGCTTTTT 59.907 34.615 0.00 0.00 35.91 1.94
709 720 5.773239 TTTAACATAGTACAGACGCAAGC 57.227 39.130 0.00 0.00 45.62 4.01
710 721 1.909376 ACATAGTACAGACGCAAGCG 58.091 50.000 13.50 13.50 46.03 4.68
711 722 0.572590 CATAGTACAGACGCAAGCGC 59.427 55.000 15.09 0.00 44.19 5.92
712 723 0.456221 ATAGTACAGACGCAAGCGCT 59.544 50.000 15.09 2.64 44.19 5.92
713 724 0.179171 TAGTACAGACGCAAGCGCTC 60.179 55.000 12.06 11.06 44.19 5.03
716 727 1.078201 TACAGACGCAAGCGCTCATG 61.078 55.000 12.06 7.74 44.19 3.07
720 741 1.067060 AGACGCAAGCGCTCATGTATA 59.933 47.619 12.06 0.00 44.19 1.47
744 765 5.962433 TGCTAGTAAGTCTTAAATGCGAGT 58.038 37.500 0.00 0.00 0.00 4.18
746 767 7.194278 TGCTAGTAAGTCTTAAATGCGAGTAG 58.806 38.462 0.00 0.00 0.00 2.57
911 1153 1.298993 CCTGCCACTCACTCAGCAT 59.701 57.895 0.00 0.00 34.16 3.79
1613 1860 2.492484 GTCAGGATCACCTACAAGTCGT 59.508 50.000 0.00 0.00 45.94 4.34
1779 2026 2.911926 GCTTGCAGGAGAAGGGGGT 61.912 63.158 0.00 0.00 0.00 4.95
2147 2397 2.943345 GCGGCGGTATGAGCATTCG 61.943 63.158 9.78 0.00 36.08 3.34
2222 2472 7.404139 CAGTATGCCGGTTTAATAAGTACTC 57.596 40.000 1.90 0.00 0.00 2.59
2231 2481 9.349145 CCGGTTTAATAAGTACTCCAATTTTTG 57.651 33.333 0.00 0.00 0.00 2.44
2270 2520 8.768501 AGACACTCATACATAGTTCTTGGATA 57.231 34.615 0.00 0.00 0.00 2.59
2385 2635 5.989777 ACGAAGTGCATTCCTATATTGGTAC 59.010 40.000 3.01 0.00 42.51 3.34
2432 2682 2.168326 TGCTTTCGCTGATGAGTGAA 57.832 45.000 3.89 3.89 45.11 3.18
2548 2798 1.338200 GCTGTGAATTCTCCGTCCTGT 60.338 52.381 7.05 0.00 0.00 4.00
2672 2923 2.037121 GGTTGGTTTGCCAGCTAATGTT 59.963 45.455 0.00 0.00 46.91 2.71
2674 2925 3.383620 TGGTTTGCCAGCTAATGTTTG 57.616 42.857 0.00 0.00 40.46 2.93
2676 2927 2.068519 GTTTGCCAGCTAATGTTTGCC 58.931 47.619 0.00 0.00 0.00 4.52
2677 2928 1.336131 TTGCCAGCTAATGTTTGCCA 58.664 45.000 0.00 0.00 0.00 4.92
2681 2932 2.368439 CCAGCTAATGTTTGCCAGCTA 58.632 47.619 0.00 0.00 42.33 3.32
2682 2933 2.754552 CCAGCTAATGTTTGCCAGCTAA 59.245 45.455 0.00 0.00 42.33 3.09
2683 2934 3.428045 CCAGCTAATGTTTGCCAGCTAAC 60.428 47.826 9.56 9.56 42.33 2.34
2684 2935 3.441572 CAGCTAATGTTTGCCAGCTAACT 59.558 43.478 15.92 2.22 42.33 2.24
2685 2936 3.691609 AGCTAATGTTTGCCAGCTAACTC 59.308 43.478 15.92 3.38 42.41 3.01
2686 2937 3.485877 GCTAATGTTTGCCAGCTAACTCG 60.486 47.826 15.92 5.29 33.92 4.18
2687 2938 2.185004 ATGTTTGCCAGCTAACTCGT 57.815 45.000 15.92 2.59 33.92 4.18
2822 3101 1.327303 GGTGTGCATTTGGTGAGGAA 58.673 50.000 0.00 0.00 0.00 3.36
2993 3272 2.054799 TCCCTAGAATATGGGTGGTGC 58.945 52.381 0.00 0.00 43.74 5.01
2996 3275 3.372566 CCCTAGAATATGGGTGGTGCAAA 60.373 47.826 0.00 0.00 38.65 3.68
2997 3276 4.473444 CCTAGAATATGGGTGGTGCAAAT 58.527 43.478 0.00 0.00 0.00 2.32
2998 3277 4.279169 CCTAGAATATGGGTGGTGCAAATG 59.721 45.833 0.00 0.00 0.00 2.32
2999 3278 3.711863 AGAATATGGGTGGTGCAAATGT 58.288 40.909 0.00 0.00 0.00 2.71
3000 3279 3.448301 AGAATATGGGTGGTGCAAATGTG 59.552 43.478 0.00 0.00 0.00 3.21
3002 3281 2.300956 ATGGGTGGTGCAAATGTGTA 57.699 45.000 0.00 0.00 0.00 2.90
3004 3283 3.441500 TGGGTGGTGCAAATGTGTATA 57.558 42.857 0.00 0.00 0.00 1.47
3006 3285 3.698539 TGGGTGGTGCAAATGTGTATATG 59.301 43.478 0.00 0.00 0.00 1.78
3008 3287 3.130164 GGTGGTGCAAATGTGTATATGCA 59.870 43.478 0.00 0.00 45.75 3.96
3014 3293 6.063640 TGCAAATGTGTATATGCATGACTC 57.936 37.500 10.16 8.83 43.32 3.36
3018 3297 7.650504 GCAAATGTGTATATGCATGACTCAATT 59.349 33.333 10.16 10.49 38.63 2.32
3019 3298 9.177304 CAAATGTGTATATGCATGACTCAATTC 57.823 33.333 10.16 0.00 0.00 2.17
3021 3300 7.250445 TGTGTATATGCATGACTCAATTCAC 57.750 36.000 10.16 8.38 0.00 3.18
3024 3303 8.347771 GTGTATATGCATGACTCAATTCACATT 58.652 33.333 10.16 0.00 0.00 2.71
3025 3304 8.347035 TGTATATGCATGACTCAATTCACATTG 58.653 33.333 10.16 0.00 41.25 2.82
3026 3305 5.654603 ATGCATGACTCAATTCACATTGT 57.345 34.783 0.00 0.00 40.78 2.71
3028 3307 5.845103 TGCATGACTCAATTCACATTGTTT 58.155 33.333 0.00 0.00 40.78 2.83
3029 3308 5.921976 TGCATGACTCAATTCACATTGTTTC 59.078 36.000 0.00 0.00 40.78 2.78
3030 3309 5.346822 GCATGACTCAATTCACATTGTTTCC 59.653 40.000 0.00 0.00 40.78 3.13
3031 3310 6.684686 CATGACTCAATTCACATTGTTTCCT 58.315 36.000 0.00 0.00 40.78 3.36
3032 3311 6.075762 TGACTCAATTCACATTGTTTCCTG 57.924 37.500 0.00 0.00 40.78 3.86
3033 3312 5.827267 TGACTCAATTCACATTGTTTCCTGA 59.173 36.000 0.00 0.00 40.78 3.86
3034 3313 6.491062 TGACTCAATTCACATTGTTTCCTGAT 59.509 34.615 0.00 0.00 40.78 2.90
3035 3314 6.684686 ACTCAATTCACATTGTTTCCTGATG 58.315 36.000 0.00 0.00 40.78 3.07
3036 3315 6.491062 ACTCAATTCACATTGTTTCCTGATGA 59.509 34.615 0.00 0.00 40.78 2.92
3037 3316 7.014518 ACTCAATTCACATTGTTTCCTGATGAA 59.985 33.333 0.00 0.00 40.78 2.57
3040 3319 6.462552 TTCACATTGTTTCCTGATGAACAA 57.537 33.333 4.39 4.39 32.46 2.83
3043 3322 7.592938 TCACATTGTTTCCTGATGAACAATAC 58.407 34.615 12.44 0.00 35.16 1.89
3045 3324 7.326789 CACATTGTTTCCTGATGAACAATACAC 59.673 37.037 12.44 0.00 35.16 2.90
3047 3326 7.523293 TTGTTTCCTGATGAACAATACACAT 57.477 32.000 0.00 0.00 31.05 3.21
3048 3327 8.628630 TTGTTTCCTGATGAACAATACACATA 57.371 30.769 0.00 0.00 31.05 2.29
3049 3328 8.806429 TGTTTCCTGATGAACAATACACATAT 57.194 30.769 0.00 0.00 31.05 1.78
3050 3329 9.898152 TGTTTCCTGATGAACAATACACATATA 57.102 29.630 0.00 0.00 31.05 0.86
3052 3331 8.902540 TTCCTGATGAACAATACACATATACC 57.097 34.615 0.00 0.00 0.00 2.73
3054 3333 8.150296 TCCTGATGAACAATACACATATACCAG 58.850 37.037 0.00 0.00 0.00 4.00
3055 3334 7.933577 CCTGATGAACAATACACATATACCAGT 59.066 37.037 0.00 0.00 0.00 4.00
3056 3335 8.887036 TGATGAACAATACACATATACCAGTC 57.113 34.615 0.00 0.00 0.00 3.51
3057 3336 8.482128 TGATGAACAATACACATATACCAGTCA 58.518 33.333 0.00 0.00 0.00 3.41
3073 3355 1.812571 AGTCAAATCATCAACCGGCAC 59.187 47.619 0.00 0.00 0.00 5.01
3086 3368 2.644418 GGCACACGCATCAAGCAA 59.356 55.556 0.00 0.00 46.13 3.91
3090 3372 1.411394 CACACGCATCAAGCAAAAGG 58.589 50.000 0.00 0.00 46.13 3.11
3124 3406 6.662865 TCAAGCTAAAACCCATTTCAATCA 57.337 33.333 0.00 0.00 32.27 2.57
3130 3412 6.034898 GCTAAAACCCATTTCAATCATCGTTG 59.965 38.462 0.00 0.00 32.27 4.10
3152 3434 8.599774 CGTTGTCCTTTTGAATTTTTACATTGT 58.400 29.630 0.00 0.00 0.00 2.71
3171 3453 3.831323 TGTGCTGGAGAGGATTTTGAAA 58.169 40.909 0.00 0.00 0.00 2.69
3182 3464 9.927668 GGAGAGGATTTTGAAATTTTACATTCA 57.072 29.630 0.00 0.00 33.93 2.57
3191 3473 6.913170 TGAAATTTTACATTCAGCTGGAGAC 58.087 36.000 15.13 0.00 32.14 3.36
3204 3486 2.182030 GAGACGAAGACAGCGGGG 59.818 66.667 0.00 0.00 0.00 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.656859 TCGAGATCTTCAAAACTAGATCCCA 59.343 40.000 0.00 0.00 38.24 4.37
1 2 5.980715 GTCGAGATCTTCAAAACTAGATCCC 59.019 44.000 0.00 0.00 38.24 3.85
2 3 6.474102 GTGTCGAGATCTTCAAAACTAGATCC 59.526 42.308 0.00 1.33 38.24 3.36
3 4 6.195613 CGTGTCGAGATCTTCAAAACTAGATC 59.804 42.308 0.00 0.00 37.89 2.75
6 7 5.391449 TCGTGTCGAGATCTTCAAAACTAG 58.609 41.667 0.00 0.00 0.00 2.57
7 8 5.366829 TCGTGTCGAGATCTTCAAAACTA 57.633 39.130 0.00 0.00 0.00 2.24
8 9 4.238761 TCGTGTCGAGATCTTCAAAACT 57.761 40.909 0.00 0.00 0.00 2.66
21 22 0.109458 CGTTGGATTCCTCGTGTCGA 60.109 55.000 3.95 0.00 0.00 4.20
22 23 1.076533 CCGTTGGATTCCTCGTGTCG 61.077 60.000 15.51 7.17 0.00 4.35
23 24 1.359459 GCCGTTGGATTCCTCGTGTC 61.359 60.000 15.51 5.38 0.00 3.67
24 25 1.375523 GCCGTTGGATTCCTCGTGT 60.376 57.895 15.51 0.00 0.00 4.49
25 26 2.452813 CGCCGTTGGATTCCTCGTG 61.453 63.158 15.51 10.30 0.00 4.35
26 27 2.125673 CGCCGTTGGATTCCTCGT 60.126 61.111 15.51 0.00 0.00 4.18
27 28 1.017177 TTTCGCCGTTGGATTCCTCG 61.017 55.000 3.95 8.76 0.00 4.63
28 29 1.130561 CTTTTCGCCGTTGGATTCCTC 59.869 52.381 3.95 0.00 0.00 3.71
29 30 1.165270 CTTTTCGCCGTTGGATTCCT 58.835 50.000 3.95 0.00 0.00 3.36
30 31 0.456142 GCTTTTCGCCGTTGGATTCC 60.456 55.000 0.00 0.00 0.00 3.01
31 32 0.793104 CGCTTTTCGCCGTTGGATTC 60.793 55.000 0.00 0.00 34.21 2.52
32 33 1.209127 CGCTTTTCGCCGTTGGATT 59.791 52.632 0.00 0.00 34.21 3.01
33 34 2.686816 CCGCTTTTCGCCGTTGGAT 61.687 57.895 0.00 0.00 36.73 3.41
34 35 3.350612 CCGCTTTTCGCCGTTGGA 61.351 61.111 0.00 0.00 36.73 3.53
35 36 3.189010 AACCGCTTTTCGCCGTTGG 62.189 57.895 0.00 0.00 38.38 3.77
36 37 1.724581 GAACCGCTTTTCGCCGTTG 60.725 57.895 0.00 0.00 39.59 4.10
37 38 2.635338 GAACCGCTTTTCGCCGTT 59.365 55.556 0.00 0.00 41.64 4.44
38 39 3.708734 CGAACCGCTTTTCGCCGT 61.709 61.111 3.94 0.00 41.73 5.68
39 40 3.348967 CTCGAACCGCTTTTCGCCG 62.349 63.158 10.74 2.75 46.46 6.46
40 41 1.359459 ATCTCGAACCGCTTTTCGCC 61.359 55.000 10.74 0.00 46.46 5.54
41 42 0.442699 AATCTCGAACCGCTTTTCGC 59.557 50.000 10.74 0.00 46.46 4.70
43 44 2.482721 TCCAAATCTCGAACCGCTTTTC 59.517 45.455 0.00 0.00 0.00 2.29
44 45 2.225727 GTCCAAATCTCGAACCGCTTTT 59.774 45.455 0.00 0.00 0.00 2.27
45 46 1.804748 GTCCAAATCTCGAACCGCTTT 59.195 47.619 0.00 0.00 0.00 3.51
46 47 1.439679 GTCCAAATCTCGAACCGCTT 58.560 50.000 0.00 0.00 0.00 4.68
47 48 0.736325 CGTCCAAATCTCGAACCGCT 60.736 55.000 0.00 0.00 0.00 5.52
48 49 1.708027 CGTCCAAATCTCGAACCGC 59.292 57.895 0.00 0.00 0.00 5.68
49 50 1.011968 TGCGTCCAAATCTCGAACCG 61.012 55.000 0.00 0.00 0.00 4.44
50 51 1.062587 CATGCGTCCAAATCTCGAACC 59.937 52.381 0.00 0.00 0.00 3.62
51 52 1.062587 CCATGCGTCCAAATCTCGAAC 59.937 52.381 0.00 0.00 0.00 3.95
52 53 1.338674 ACCATGCGTCCAAATCTCGAA 60.339 47.619 0.00 0.00 0.00 3.71
53 54 0.249120 ACCATGCGTCCAAATCTCGA 59.751 50.000 0.00 0.00 0.00 4.04
54 55 1.086696 AACCATGCGTCCAAATCTCG 58.913 50.000 0.00 0.00 0.00 4.04
55 56 4.394920 TCTTAAACCATGCGTCCAAATCTC 59.605 41.667 0.00 0.00 0.00 2.75
56 57 4.331968 TCTTAAACCATGCGTCCAAATCT 58.668 39.130 0.00 0.00 0.00 2.40
57 58 4.394920 TCTCTTAAACCATGCGTCCAAATC 59.605 41.667 0.00 0.00 0.00 2.17
58 59 4.331968 TCTCTTAAACCATGCGTCCAAAT 58.668 39.130 0.00 0.00 0.00 2.32
59 60 3.745799 TCTCTTAAACCATGCGTCCAAA 58.254 40.909 0.00 0.00 0.00 3.28
60 61 3.410631 TCTCTTAAACCATGCGTCCAA 57.589 42.857 0.00 0.00 0.00 3.53
61 62 3.627395 ATCTCTTAAACCATGCGTCCA 57.373 42.857 0.00 0.00 0.00 4.02
62 63 6.255950 GTTTTATCTCTTAAACCATGCGTCC 58.744 40.000 0.00 0.00 29.47 4.79
63 64 5.957796 CGTTTTATCTCTTAAACCATGCGTC 59.042 40.000 0.00 0.00 32.05 5.19
64 65 5.410439 ACGTTTTATCTCTTAAACCATGCGT 59.590 36.000 0.00 0.00 32.05 5.24
65 66 5.864986 ACGTTTTATCTCTTAAACCATGCG 58.135 37.500 0.00 0.00 32.05 4.73
66 67 8.424731 CAAAACGTTTTATCTCTTAAACCATGC 58.575 33.333 24.79 0.00 32.05 4.06
67 68 9.672086 TCAAAACGTTTTATCTCTTAAACCATG 57.328 29.630 24.79 8.65 32.05 3.66
84 85 7.095691 TTCGTAGATCCGTTTATTCAAAACGTT 60.096 33.333 18.32 0.00 43.53 3.99
85 86 6.365789 TTCGTAGATCCGTTTATTCAAAACGT 59.634 34.615 18.32 4.51 43.53 3.99
86 87 6.754206 TTCGTAGATCCGTTTATTCAAAACG 58.246 36.000 14.30 14.30 44.14 3.60
87 88 8.938047 TTTTCGTAGATCCGTTTATTCAAAAC 57.062 30.769 0.00 0.00 35.04 2.43
110 111 4.141801 GCAACCTGGGAGTTTTACCTTTTT 60.142 41.667 0.00 0.00 0.00 1.94
111 112 3.386726 GCAACCTGGGAGTTTTACCTTTT 59.613 43.478 0.00 0.00 0.00 2.27
112 113 2.963101 GCAACCTGGGAGTTTTACCTTT 59.037 45.455 0.00 0.00 0.00 3.11
113 114 2.594131 GCAACCTGGGAGTTTTACCTT 58.406 47.619 0.00 0.00 0.00 3.50
114 115 1.544759 CGCAACCTGGGAGTTTTACCT 60.545 52.381 0.00 0.00 31.21 3.08
115 116 0.879090 CGCAACCTGGGAGTTTTACC 59.121 55.000 0.00 0.00 31.21 2.85
116 117 1.534163 GTCGCAACCTGGGAGTTTTAC 59.466 52.381 0.00 0.00 40.09 2.01
117 118 1.141254 TGTCGCAACCTGGGAGTTTTA 59.859 47.619 0.00 0.00 40.09 1.52
118 119 0.106918 TGTCGCAACCTGGGAGTTTT 60.107 50.000 0.00 0.00 40.09 2.43
119 120 0.106918 TTGTCGCAACCTGGGAGTTT 60.107 50.000 0.00 0.00 40.09 2.66
120 121 0.535102 CTTGTCGCAACCTGGGAGTT 60.535 55.000 0.00 0.00 40.09 3.01
121 122 1.071471 CTTGTCGCAACCTGGGAGT 59.929 57.895 0.00 0.00 40.09 3.85
122 123 1.071471 ACTTGTCGCAACCTGGGAG 59.929 57.895 0.00 0.00 40.09 4.30
123 124 1.227823 CACTTGTCGCAACCTGGGA 60.228 57.895 0.00 0.00 36.96 4.37
124 125 2.260869 CCACTTGTCGCAACCTGGG 61.261 63.158 0.00 0.00 0.00 4.45
125 126 2.908073 GCCACTTGTCGCAACCTGG 61.908 63.158 0.00 0.00 0.00 4.45
126 127 1.845809 GAGCCACTTGTCGCAACCTG 61.846 60.000 0.00 0.00 0.00 4.00
127 128 1.598130 GAGCCACTTGTCGCAACCT 60.598 57.895 0.00 0.00 0.00 3.50
128 129 1.891919 TGAGCCACTTGTCGCAACC 60.892 57.895 0.00 0.00 0.00 3.77
129 130 1.160329 AGTGAGCCACTTGTCGCAAC 61.160 55.000 2.38 0.00 42.59 4.17
130 131 1.146041 AGTGAGCCACTTGTCGCAA 59.854 52.632 2.38 0.00 42.59 4.85
131 132 1.595109 CAGTGAGCCACTTGTCGCA 60.595 57.895 5.24 0.00 42.59 5.10
132 133 2.320587 CCAGTGAGCCACTTGTCGC 61.321 63.158 5.24 0.00 42.59 5.19
133 134 0.946221 GTCCAGTGAGCCACTTGTCG 60.946 60.000 5.24 0.00 42.59 4.35
134 135 0.946221 CGTCCAGTGAGCCACTTGTC 60.946 60.000 5.24 0.86 42.59 3.18
135 136 1.069765 CGTCCAGTGAGCCACTTGT 59.930 57.895 5.24 0.00 42.59 3.16
136 137 2.320587 GCGTCCAGTGAGCCACTTG 61.321 63.158 5.24 3.22 42.59 3.16
137 138 2.031163 GCGTCCAGTGAGCCACTT 59.969 61.111 5.24 0.00 42.59 3.16
138 139 3.233980 TGCGTCCAGTGAGCCACT 61.234 61.111 2.38 2.38 46.51 4.00
139 140 3.044305 GTGCGTCCAGTGAGCCAC 61.044 66.667 0.00 0.00 34.10 5.01
140 141 2.882677 ATGTGCGTCCAGTGAGCCA 61.883 57.895 0.00 0.00 0.00 4.75
141 142 2.046892 ATGTGCGTCCAGTGAGCC 60.047 61.111 0.00 0.00 0.00 4.70
142 143 3.031964 GCATGTGCGTCCAGTGAGC 62.032 63.158 0.00 0.00 0.00 4.26
143 144 1.632948 CTGCATGTGCGTCCAGTGAG 61.633 60.000 0.01 0.00 45.83 3.51
144 145 1.668793 CTGCATGTGCGTCCAGTGA 60.669 57.895 0.01 0.00 45.83 3.41
145 146 2.865308 CTGCATGTGCGTCCAGTG 59.135 61.111 0.01 0.00 45.83 3.66
146 147 3.052082 GCTGCATGTGCGTCCAGT 61.052 61.111 0.00 0.00 45.83 4.00
159 160 4.196826 CGACAAGTAGCGCGCTGC 62.197 66.667 41.85 39.49 46.98 5.25
160 161 4.196826 GCGACAAGTAGCGCGCTG 62.197 66.667 41.85 28.38 45.41 5.18
165 166 1.626654 CCAGGTTGCGACAAGTAGCG 61.627 60.000 6.39 0.00 33.77 4.26
166 167 1.298859 CCCAGGTTGCGACAAGTAGC 61.299 60.000 6.39 0.00 0.00 3.58
167 168 0.673644 CCCCAGGTTGCGACAAGTAG 60.674 60.000 6.39 0.00 0.00 2.57
168 169 1.122632 TCCCCAGGTTGCGACAAGTA 61.123 55.000 6.39 0.00 0.00 2.24
169 170 1.990160 TTCCCCAGGTTGCGACAAGT 61.990 55.000 6.39 0.00 0.00 3.16
170 171 1.228124 TTCCCCAGGTTGCGACAAG 60.228 57.895 6.39 0.00 0.00 3.16
171 172 1.527380 GTTCCCCAGGTTGCGACAA 60.527 57.895 6.39 0.00 0.00 3.18
172 173 2.112297 GTTCCCCAGGTTGCGACA 59.888 61.111 6.39 0.00 0.00 4.35
173 174 1.966451 CAGTTCCCCAGGTTGCGAC 60.966 63.158 0.00 0.00 0.00 5.19
174 175 2.429930 CAGTTCCCCAGGTTGCGA 59.570 61.111 0.00 0.00 0.00 5.10
175 176 2.672996 CCAGTTCCCCAGGTTGCG 60.673 66.667 0.00 0.00 0.00 4.85
176 177 0.251787 ATTCCAGTTCCCCAGGTTGC 60.252 55.000 0.00 0.00 0.00 4.17
177 178 1.075374 TCATTCCAGTTCCCCAGGTTG 59.925 52.381 0.00 0.00 0.00 3.77
178 179 1.455822 TCATTCCAGTTCCCCAGGTT 58.544 50.000 0.00 0.00 0.00 3.50
179 180 1.566231 GATCATTCCAGTTCCCCAGGT 59.434 52.381 0.00 0.00 0.00 4.00
180 181 1.849039 AGATCATTCCAGTTCCCCAGG 59.151 52.381 0.00 0.00 0.00 4.45
181 182 3.549794 GAAGATCATTCCAGTTCCCCAG 58.450 50.000 0.00 0.00 0.00 4.45
182 183 2.092968 CGAAGATCATTCCAGTTCCCCA 60.093 50.000 0.00 0.00 0.00 4.96
183 184 2.565841 CGAAGATCATTCCAGTTCCCC 58.434 52.381 0.00 0.00 0.00 4.81
184 185 1.943340 GCGAAGATCATTCCAGTTCCC 59.057 52.381 0.00 0.00 0.00 3.97
185 186 1.594862 CGCGAAGATCATTCCAGTTCC 59.405 52.381 0.00 0.00 0.00 3.62
186 187 2.282820 GTCGCGAAGATCATTCCAGTTC 59.717 50.000 12.06 0.00 0.00 3.01
187 188 2.271800 GTCGCGAAGATCATTCCAGTT 58.728 47.619 12.06 0.00 0.00 3.16
188 189 1.799181 CGTCGCGAAGATCATTCCAGT 60.799 52.381 17.47 0.00 0.00 4.00
189 190 0.848942 CGTCGCGAAGATCATTCCAG 59.151 55.000 17.47 0.00 0.00 3.86
190 191 0.454196 TCGTCGCGAAGATCATTCCA 59.546 50.000 20.85 0.00 31.06 3.53
191 192 1.124462 CTCGTCGCGAAGATCATTCC 58.876 55.000 24.50 1.11 34.74 3.01
192 193 1.828832 ACTCGTCGCGAAGATCATTC 58.171 50.000 24.50 1.89 34.74 2.67
193 194 2.355132 AGTACTCGTCGCGAAGATCATT 59.645 45.455 24.50 11.95 34.74 2.57
194 195 1.941294 AGTACTCGTCGCGAAGATCAT 59.059 47.619 24.50 15.28 34.74 2.45
195 196 1.326852 GAGTACTCGTCGCGAAGATCA 59.673 52.381 24.50 12.71 34.74 2.92
196 197 1.333081 GGAGTACTCGTCGCGAAGATC 60.333 57.143 24.50 18.04 34.74 2.75
197 198 0.656785 GGAGTACTCGTCGCGAAGAT 59.343 55.000 24.50 16.36 34.74 2.40
198 199 0.390866 AGGAGTACTCGTCGCGAAGA 60.391 55.000 23.00 23.00 34.74 2.87
199 200 0.447011 AAGGAGTACTCGTCGCGAAG 59.553 55.000 17.87 14.48 34.74 3.79
200 201 1.725641 TAAGGAGTACTCGTCGCGAA 58.274 50.000 17.87 0.00 34.74 4.70
201 202 1.394917 GTTAAGGAGTACTCGTCGCGA 59.605 52.381 17.87 3.71 0.00 5.87
202 203 1.396301 AGTTAAGGAGTACTCGTCGCG 59.604 52.381 17.87 0.00 0.00 5.87
203 204 3.620821 ACTAGTTAAGGAGTACTCGTCGC 59.379 47.826 17.87 11.05 0.00 5.19
204 205 4.867047 TCACTAGTTAAGGAGTACTCGTCG 59.133 45.833 17.87 6.12 0.00 5.12
205 206 6.923928 ATCACTAGTTAAGGAGTACTCGTC 57.076 41.667 17.87 6.60 0.00 4.20
206 207 7.700022 AAATCACTAGTTAAGGAGTACTCGT 57.300 36.000 16.56 14.43 0.00 4.18
219 220 8.870116 AGGAGCCAATTTTTAAAATCACTAGTT 58.130 29.630 3.23 0.00 0.00 2.24
220 221 8.422577 AGGAGCCAATTTTTAAAATCACTAGT 57.577 30.769 3.23 0.00 0.00 2.57
221 222 9.143631 CAAGGAGCCAATTTTTAAAATCACTAG 57.856 33.333 3.23 0.00 0.00 2.57
222 223 8.646900 ACAAGGAGCCAATTTTTAAAATCACTA 58.353 29.630 3.23 0.00 0.00 2.74
223 224 7.508687 ACAAGGAGCCAATTTTTAAAATCACT 58.491 30.769 3.23 2.09 0.00 3.41
224 225 7.728847 ACAAGGAGCCAATTTTTAAAATCAC 57.271 32.000 3.23 0.00 0.00 3.06
225 226 8.424918 TGTACAAGGAGCCAATTTTTAAAATCA 58.575 29.630 3.23 0.00 0.00 2.57
226 227 8.825667 TGTACAAGGAGCCAATTTTTAAAATC 57.174 30.769 3.23 0.00 0.00 2.17
227 228 9.620259 TTTGTACAAGGAGCCAATTTTTAAAAT 57.380 25.926 8.56 0.00 0.00 1.82
228 229 9.449719 TTTTGTACAAGGAGCCAATTTTTAAAA 57.550 25.926 8.56 0.00 0.00 1.52
229 230 9.449719 TTTTTGTACAAGGAGCCAATTTTTAAA 57.550 25.926 8.56 0.00 0.00 1.52
266 267 4.404715 TGTAACCTTACACCTATGGAGAGC 59.595 45.833 0.00 0.00 38.64 4.09
288 289 1.873903 CGCTCGAATTCCCCTATGGTG 60.874 57.143 0.00 0.00 34.77 4.17
292 293 2.289694 CCAATCGCTCGAATTCCCCTAT 60.290 50.000 0.00 0.00 0.00 2.57
302 303 2.032634 GCACCAACCAATCGCTCGA 61.033 57.895 0.00 0.00 0.00 4.04
322 323 3.787476 GCCACGTCAGTGTTTAGTTTGTG 60.787 47.826 0.00 0.00 46.56 3.33
361 362 8.557450 AGTTGATCCCCACTACTAACAATTATT 58.443 33.333 0.00 0.00 0.00 1.40
363 364 7.504926 AGTTGATCCCCACTACTAACAATTA 57.495 36.000 0.00 0.00 0.00 1.40
391 392 5.940470 ACAACATTCAAGTAGTCATCCCTTC 59.060 40.000 0.00 0.00 0.00 3.46
394 395 5.163854 CGAACAACATTCAAGTAGTCATCCC 60.164 44.000 0.00 0.00 0.00 3.85
406 414 4.438148 TGTCTTGAGTCGAACAACATTCA 58.562 39.130 0.00 0.00 0.00 2.57
407 415 5.597813 ATGTCTTGAGTCGAACAACATTC 57.402 39.130 0.00 0.00 0.00 2.67
409 417 7.320399 TGTATATGTCTTGAGTCGAACAACAT 58.680 34.615 12.49 12.49 0.00 2.71
410 418 6.683715 TGTATATGTCTTGAGTCGAACAACA 58.316 36.000 0.00 0.00 0.00 3.33
486 495 6.585852 CCGTTTTGAATTTCGGTTTTAATGG 58.414 36.000 0.00 0.00 38.45 3.16
497 506 4.461431 ACTCCCCATACCGTTTTGAATTTC 59.539 41.667 0.00 0.00 0.00 2.17
532 541 9.567848 GATTTTTATGGTTTCTGATTTTCGCTA 57.432 29.630 0.00 0.00 0.00 4.26
535 544 8.447787 ACGATTTTTATGGTTTCTGATTTTCG 57.552 30.769 0.00 0.00 0.00 3.46
567 576 3.632604 TGCATTCTAAAACCAAACCGACA 59.367 39.130 0.00 0.00 0.00 4.35
596 605 5.919755 TGGGTTGCAACATCGTAATAGATA 58.080 37.500 29.55 1.22 0.00 1.98
685 696 6.595794 GCTTGCGTCTGTACTATGTTAAAAA 58.404 36.000 0.00 0.00 0.00 1.94
686 697 5.164031 CGCTTGCGTCTGTACTATGTTAAAA 60.164 40.000 6.86 0.00 0.00 1.52
687 698 4.325204 CGCTTGCGTCTGTACTATGTTAAA 59.675 41.667 6.86 0.00 0.00 1.52
688 699 3.855379 CGCTTGCGTCTGTACTATGTTAA 59.145 43.478 6.86 0.00 0.00 2.01
689 700 3.431856 CGCTTGCGTCTGTACTATGTTA 58.568 45.455 6.86 0.00 0.00 2.41
690 701 2.259618 CGCTTGCGTCTGTACTATGTT 58.740 47.619 6.86 0.00 0.00 2.71
691 702 1.909376 CGCTTGCGTCTGTACTATGT 58.091 50.000 6.86 0.00 0.00 2.29
692 703 0.572590 GCGCTTGCGTCTGTACTATG 59.427 55.000 16.38 0.00 0.00 2.23
693 704 0.456221 AGCGCTTGCGTCTGTACTAT 59.544 50.000 16.38 0.00 45.69 2.12
694 705 0.179171 GAGCGCTTGCGTCTGTACTA 60.179 55.000 13.26 0.00 45.69 1.82
695 706 1.444553 GAGCGCTTGCGTCTGTACT 60.445 57.895 13.26 3.73 45.69 2.73
696 707 1.078759 ATGAGCGCTTGCGTCTGTAC 61.079 55.000 13.26 0.00 45.69 2.90
697 708 1.078201 CATGAGCGCTTGCGTCTGTA 61.078 55.000 13.26 6.26 45.69 2.74
698 709 2.047844 ATGAGCGCTTGCGTCTGT 60.048 55.556 13.26 0.00 45.69 3.41
699 710 1.078201 TACATGAGCGCTTGCGTCTG 61.078 55.000 13.26 5.84 45.69 3.51
700 711 0.179100 ATACATGAGCGCTTGCGTCT 60.179 50.000 13.26 13.17 45.69 4.18
701 712 1.487482 TATACATGAGCGCTTGCGTC 58.513 50.000 13.26 12.36 45.69 5.19
702 713 1.794701 CATATACATGAGCGCTTGCGT 59.205 47.619 13.26 11.64 45.69 5.24
703 714 1.463034 GCATATACATGAGCGCTTGCG 60.463 52.381 13.26 10.90 36.79 4.85
704 715 1.802960 AGCATATACATGAGCGCTTGC 59.197 47.619 13.26 15.30 33.67 4.01
705 716 4.240888 ACTAGCATATACATGAGCGCTTG 58.759 43.478 13.26 9.93 33.67 4.01
706 717 4.527509 ACTAGCATATACATGAGCGCTT 57.472 40.909 13.26 0.00 33.67 4.68
707 718 5.184096 ACTTACTAGCATATACATGAGCGCT 59.816 40.000 11.27 11.27 33.67 5.92
708 719 5.403246 ACTTACTAGCATATACATGAGCGC 58.597 41.667 0.00 0.00 33.67 5.92
709 720 6.847400 AGACTTACTAGCATATACATGAGCG 58.153 40.000 0.00 0.00 33.67 5.03
716 727 9.622004 TCGCATTTAAGACTTACTAGCATATAC 57.378 33.333 0.00 0.00 0.00 1.47
720 741 6.574350 ACTCGCATTTAAGACTTACTAGCAT 58.426 36.000 0.00 0.00 0.00 3.79
901 1143 2.040145 TGGACAATGGAATGCTGAGTGA 59.960 45.455 0.00 0.00 0.00 3.41
911 1153 2.562298 GGATGCAAGTTGGACAATGGAA 59.438 45.455 4.75 0.00 0.00 3.53
1673 1920 2.513666 GATGACATCCGGCCGCAA 60.514 61.111 22.85 10.79 0.00 4.85
1779 2026 2.224159 GCCTCAGTGTTCCCCTCCA 61.224 63.158 0.00 0.00 0.00 3.86
2071 2321 1.294780 CTCCTCTTCGTTGCTGGCT 59.705 57.895 0.00 0.00 0.00 4.75
2147 2397 1.379044 CACCTCCAGATGTTGCCCC 60.379 63.158 0.00 0.00 0.00 5.80
2220 2470 5.452078 TGTAACCTCAGCAAAAATTGGAG 57.548 39.130 0.00 0.00 0.00 3.86
2221 2471 5.860941 TTGTAACCTCAGCAAAAATTGGA 57.139 34.783 0.00 0.00 0.00 3.53
2222 2472 7.542130 GTCTATTGTAACCTCAGCAAAAATTGG 59.458 37.037 0.00 0.00 0.00 3.16
2231 2481 5.073311 TGAGTGTCTATTGTAACCTCAGC 57.927 43.478 0.00 0.00 0.00 4.26
2263 2513 1.224069 CGCGAGGCACCATATCCAAG 61.224 60.000 0.00 0.00 0.00 3.61
2385 2635 4.944962 TCATGAGCCGTGTAAATTCAAG 57.055 40.909 0.00 0.00 0.00 3.02
2432 2682 5.477291 CGACATCTACTGGTATGGATAAGGT 59.523 44.000 0.00 0.00 0.00 3.50
2566 2816 0.968405 ATGCAAATGAAAGCACGGGT 59.032 45.000 0.00 0.00 44.49 5.28
2672 2923 3.064207 CAAAGTACGAGTTAGCTGGCAA 58.936 45.455 0.00 0.00 0.00 4.52
2674 2925 2.000447 CCAAAGTACGAGTTAGCTGGC 59.000 52.381 0.00 0.00 0.00 4.85
2676 2927 1.654105 CGCCAAAGTACGAGTTAGCTG 59.346 52.381 0.00 0.00 0.00 4.24
2677 2928 1.542915 TCGCCAAAGTACGAGTTAGCT 59.457 47.619 0.00 0.00 33.69 3.32
2681 2932 1.134226 CGTTCGCCAAAGTACGAGTT 58.866 50.000 0.00 0.00 39.81 3.01
2682 2933 0.665369 CCGTTCGCCAAAGTACGAGT 60.665 55.000 0.00 0.00 39.81 4.18
2683 2934 0.665369 ACCGTTCGCCAAAGTACGAG 60.665 55.000 0.00 0.00 39.81 4.18
2684 2935 0.940519 CACCGTTCGCCAAAGTACGA 60.941 55.000 0.00 0.00 36.16 3.43
2685 2936 0.940519 TCACCGTTCGCCAAAGTACG 60.941 55.000 0.00 0.00 0.00 3.67
2686 2937 0.788391 CTCACCGTTCGCCAAAGTAC 59.212 55.000 0.00 0.00 0.00 2.73
2687 2938 0.675083 TCTCACCGTTCGCCAAAGTA 59.325 50.000 0.00 0.00 0.00 2.24
2993 3272 9.177304 GAATTGAGTCATGCATATACACATTTG 57.823 33.333 16.35 0.00 0.00 2.32
2996 3275 7.499895 TGTGAATTGAGTCATGCATATACACAT 59.500 33.333 0.00 0.00 0.00 3.21
2997 3276 6.822676 TGTGAATTGAGTCATGCATATACACA 59.177 34.615 0.00 3.09 0.00 3.72
2998 3277 7.250445 TGTGAATTGAGTCATGCATATACAC 57.750 36.000 0.00 0.21 0.00 2.90
2999 3278 8.347035 CAATGTGAATTGAGTCATGCATATACA 58.653 33.333 0.00 0.00 33.55 2.29
3000 3279 8.347771 ACAATGTGAATTGAGTCATGCATATAC 58.652 33.333 0.00 0.44 35.60 1.47
3002 3281 7.342769 ACAATGTGAATTGAGTCATGCATAT 57.657 32.000 0.00 0.00 35.60 1.78
3004 3283 5.654603 ACAATGTGAATTGAGTCATGCAT 57.345 34.783 5.49 0.00 35.60 3.96
3006 3285 5.346822 GGAAACAATGTGAATTGAGTCATGC 59.653 40.000 5.49 0.00 35.60 4.06
3008 3287 6.491062 TCAGGAAACAATGTGAATTGAGTCAT 59.509 34.615 5.49 0.00 35.60 3.06
3010 3289 6.317789 TCAGGAAACAATGTGAATTGAGTC 57.682 37.500 5.49 2.58 35.60 3.36
3011 3290 6.491062 TCATCAGGAAACAATGTGAATTGAGT 59.509 34.615 5.49 0.00 35.60 3.41
3014 3293 6.924612 TGTTCATCAGGAAACAATGTGAATTG 59.075 34.615 0.00 0.00 37.23 2.32
3018 3297 6.653526 ATTGTTCATCAGGAAACAATGTGA 57.346 33.333 11.46 0.00 36.63 3.58
3019 3298 7.326789 GTGTATTGTTCATCAGGAAACAATGTG 59.673 37.037 18.69 0.00 37.57 3.21
3021 3300 7.369607 TGTGTATTGTTCATCAGGAAACAATG 58.630 34.615 18.69 0.00 37.57 2.82
3024 3303 8.806429 ATATGTGTATTGTTCATCAGGAAACA 57.194 30.769 0.00 0.00 37.23 2.83
3026 3305 9.337396 GGTATATGTGTATTGTTCATCAGGAAA 57.663 33.333 0.00 0.00 37.23 3.13
3028 3307 8.028652 TGGTATATGTGTATTGTTCATCAGGA 57.971 34.615 0.00 0.00 0.00 3.86
3029 3308 7.933577 ACTGGTATATGTGTATTGTTCATCAGG 59.066 37.037 0.00 0.00 0.00 3.86
3030 3309 8.893219 ACTGGTATATGTGTATTGTTCATCAG 57.107 34.615 0.00 0.00 0.00 2.90
3031 3310 8.482128 TGACTGGTATATGTGTATTGTTCATCA 58.518 33.333 0.00 0.00 0.00 3.07
3032 3311 8.887036 TGACTGGTATATGTGTATTGTTCATC 57.113 34.615 0.00 0.00 0.00 2.92
3033 3312 9.679661 TTTGACTGGTATATGTGTATTGTTCAT 57.320 29.630 0.00 0.00 0.00 2.57
3034 3313 9.679661 ATTTGACTGGTATATGTGTATTGTTCA 57.320 29.630 0.00 0.00 0.00 3.18
3036 3315 9.679661 TGATTTGACTGGTATATGTGTATTGTT 57.320 29.630 0.00 0.00 0.00 2.83
3037 3316 9.851686 ATGATTTGACTGGTATATGTGTATTGT 57.148 29.630 0.00 0.00 0.00 2.71
3043 3322 7.518848 CGGTTGATGATTTGACTGGTATATGTG 60.519 40.741 0.00 0.00 0.00 3.21
3045 3324 6.073058 CCGGTTGATGATTTGACTGGTATATG 60.073 42.308 0.00 0.00 34.54 1.78
3047 3326 5.364778 CCGGTTGATGATTTGACTGGTATA 58.635 41.667 0.00 0.00 34.54 1.47
3048 3327 4.199310 CCGGTTGATGATTTGACTGGTAT 58.801 43.478 0.00 0.00 34.54 2.73
3049 3328 3.605634 CCGGTTGATGATTTGACTGGTA 58.394 45.455 0.00 0.00 34.54 3.25
3050 3329 2.436417 CCGGTTGATGATTTGACTGGT 58.564 47.619 0.00 0.00 34.54 4.00
3051 3330 1.133025 GCCGGTTGATGATTTGACTGG 59.867 52.381 1.90 0.00 40.69 4.00
3052 3331 1.811965 TGCCGGTTGATGATTTGACTG 59.188 47.619 1.90 0.00 0.00 3.51
3054 3333 1.539388 TGTGCCGGTTGATGATTTGAC 59.461 47.619 1.90 0.00 0.00 3.18
3055 3334 1.539388 GTGTGCCGGTTGATGATTTGA 59.461 47.619 1.90 0.00 0.00 2.69
3056 3335 1.728825 CGTGTGCCGGTTGATGATTTG 60.729 52.381 1.90 0.00 0.00 2.32
3057 3336 0.521291 CGTGTGCCGGTTGATGATTT 59.479 50.000 1.90 0.00 0.00 2.17
3073 3355 0.318869 TGCCTTTTGCTTGATGCGTG 60.319 50.000 0.00 0.00 46.63 5.34
3106 3388 7.090173 ACAACGATGATTGAAATGGGTTTTAG 58.910 34.615 0.00 0.00 33.57 1.85
3107 3389 6.987386 ACAACGATGATTGAAATGGGTTTTA 58.013 32.000 0.00 0.00 33.57 1.52
3111 3393 3.443681 GGACAACGATGATTGAAATGGGT 59.556 43.478 0.00 0.00 33.57 4.51
3124 3406 9.541143 AATGTAAAAATTCAAAAGGACAACGAT 57.459 25.926 0.00 0.00 0.00 3.73
3130 3412 8.063630 CAGCACAATGTAAAAATTCAAAAGGAC 58.936 33.333 0.00 0.00 0.00 3.85
3152 3434 6.423776 AAAATTTCAAAATCCTCTCCAGCA 57.576 33.333 0.00 0.00 0.00 4.41
3171 3453 4.832248 TCGTCTCCAGCTGAATGTAAAAT 58.168 39.130 17.39 0.00 0.00 1.82
3182 3464 1.589113 GCTGTCTTCGTCTCCAGCT 59.411 57.895 10.93 0.00 45.25 4.24
3204 3486 1.681264 GAGAAGAGGAGTAGAGCAGGC 59.319 57.143 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.