Multiple sequence alignment - TraesCS3B01G251800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G251800 chr3B 100.000 2564 0 0 1 2564 404421423 404423986 0.000000e+00 4735
1 TraesCS3B01G251800 chr3B 92.431 1057 65 5 840 1883 572479124 572480178 0.000000e+00 1495
2 TraesCS3B01G251800 chr3B 90.255 431 42 0 328 758 572478427 572478857 4.790000e-157 564
3 TraesCS3B01G251800 chr1D 90.800 913 80 3 973 1883 348069369 348070279 0.000000e+00 1218
4 TraesCS3B01G251800 chr1D 96.512 86 3 0 2479 2564 275601706 275601621 2.660000e-30 143
5 TraesCS3B01G251800 chr1D 95.349 86 4 0 2479 2564 59115129 59115214 1.240000e-28 137
6 TraesCS3B01G251800 chr4D 91.516 884 72 3 1001 1883 422508497 422509378 0.000000e+00 1214
7 TraesCS3B01G251800 chr4D 93.258 178 10 2 329 505 422507824 422508000 7.040000e-66 261
8 TraesCS3B01G251800 chr4D 91.398 186 13 2 320 505 504007414 504007232 4.230000e-63 252
9 TraesCS3B01G251800 chr1B 90.766 888 81 1 996 1883 60554901 60555787 0.000000e+00 1184
10 TraesCS3B01G251800 chr1B 86.878 221 27 2 329 548 22019530 22019311 1.970000e-61 246
11 TraesCS3B01G251800 chr2A 90.315 888 85 1 996 1883 384888002 384887116 0.000000e+00 1162
12 TraesCS3B01G251800 chr7D 89.944 895 88 1 989 1883 632396115 632395223 0.000000e+00 1153
13 TraesCS3B01G251800 chr7D 89.278 914 93 4 972 1883 554662419 554661509 0.000000e+00 1140
14 TraesCS3B01G251800 chr7D 96.512 86 3 0 2479 2564 632395230 632395145 2.660000e-30 143
15 TraesCS3B01G251800 chr7D 94.186 86 5 0 2479 2564 98281261 98281176 5.760000e-27 132
16 TraesCS3B01G251800 chr3A 89.821 894 91 0 983 1876 550426808 550427701 0.000000e+00 1147
17 TraesCS3B01G251800 chr3A 98.780 328 4 0 1 328 413999874 414000201 3.680000e-163 584
18 TraesCS3B01G251800 chr5D 89.810 893 90 1 991 1883 23172809 23173700 0.000000e+00 1144
19 TraesCS3B01G251800 chr5D 87.783 221 24 3 329 547 526278989 526278770 3.270000e-64 255
20 TraesCS3B01G251800 chr5D 95.349 86 4 0 2479 2564 50026604 50026519 1.240000e-28 137
21 TraesCS3B01G251800 chr7B 95.292 616 21 4 1875 2483 612190155 612189541 0.000000e+00 970
22 TraesCS3B01G251800 chr7B 95.545 606 16 6 1880 2478 4329941 4329340 0.000000e+00 959
23 TraesCS3B01G251800 chr7B 95.357 603 21 3 1884 2479 157221321 157220719 0.000000e+00 952
24 TraesCS3B01G251800 chr5B 95.724 608 15 4 1882 2478 299676358 299676965 0.000000e+00 968
25 TraesCS3B01G251800 chr5B 95.522 603 18 5 1883 2478 520855737 520856337 0.000000e+00 955
26 TraesCS3B01G251800 chr5B 95.191 603 21 4 1883 2478 570514968 570515569 0.000000e+00 946
27 TraesCS3B01G251800 chr6B 95.681 602 16 5 1883 2478 339327264 339327861 0.000000e+00 959
28 TraesCS3B01G251800 chr5A 95.357 603 18 6 1884 2478 608647801 608647201 0.000000e+00 950
29 TraesCS3B01G251800 chr5A 86.977 215 27 1 329 543 9507696 9507483 9.170000e-60 241
30 TraesCS3B01G251800 chr2B 94.581 609 23 4 1884 2482 263293115 263292507 0.000000e+00 933
31 TraesCS3B01G251800 chr3D 98.476 328 4 1 1 327 315765481 315765154 6.150000e-161 577
32 TraesCS3B01G251800 chr6D 92.697 178 11 1 327 504 263021351 263021176 3.270000e-64 255
33 TraesCS3B01G251800 chr6D 94.186 86 5 0 2479 2564 459390413 459390328 5.760000e-27 132
34 TraesCS3B01G251800 chr2D 91.803 183 13 1 323 505 194460552 194460732 1.180000e-63 254
35 TraesCS3B01G251800 chr2D 94.186 86 5 0 2479 2564 476990043 476989958 5.760000e-27 132
36 TraesCS3B01G251800 chr4B 88.350 206 15 7 303 505 475248648 475248847 3.300000e-59 239
37 TraesCS3B01G251800 chr1A 95.349 86 4 0 2479 2564 445253821 445253906 1.240000e-28 137
38 TraesCS3B01G251800 chr7A 94.186 86 5 0 2479 2564 535917151 535917066 5.760000e-27 132


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G251800 chr3B 404421423 404423986 2563 False 4735.0 4735 100.000 1 2564 1 chr3B.!!$F1 2563
1 TraesCS3B01G251800 chr3B 572478427 572480178 1751 False 1029.5 1495 91.343 328 1883 2 chr3B.!!$F2 1555
2 TraesCS3B01G251800 chr1D 348069369 348070279 910 False 1218.0 1218 90.800 973 1883 1 chr1D.!!$F2 910
3 TraesCS3B01G251800 chr4D 422507824 422509378 1554 False 737.5 1214 92.387 329 1883 2 chr4D.!!$F1 1554
4 TraesCS3B01G251800 chr1B 60554901 60555787 886 False 1184.0 1184 90.766 996 1883 1 chr1B.!!$F1 887
5 TraesCS3B01G251800 chr2A 384887116 384888002 886 True 1162.0 1162 90.315 996 1883 1 chr2A.!!$R1 887
6 TraesCS3B01G251800 chr7D 554661509 554662419 910 True 1140.0 1140 89.278 972 1883 1 chr7D.!!$R2 911
7 TraesCS3B01G251800 chr7D 632395145 632396115 970 True 648.0 1153 93.228 989 2564 2 chr7D.!!$R3 1575
8 TraesCS3B01G251800 chr3A 550426808 550427701 893 False 1147.0 1147 89.821 983 1876 1 chr3A.!!$F2 893
9 TraesCS3B01G251800 chr5D 23172809 23173700 891 False 1144.0 1144 89.810 991 1883 1 chr5D.!!$F1 892
10 TraesCS3B01G251800 chr7B 612189541 612190155 614 True 970.0 970 95.292 1875 2483 1 chr7B.!!$R3 608
11 TraesCS3B01G251800 chr7B 4329340 4329941 601 True 959.0 959 95.545 1880 2478 1 chr7B.!!$R1 598
12 TraesCS3B01G251800 chr7B 157220719 157221321 602 True 952.0 952 95.357 1884 2479 1 chr7B.!!$R2 595
13 TraesCS3B01G251800 chr5B 299676358 299676965 607 False 968.0 968 95.724 1882 2478 1 chr5B.!!$F1 596
14 TraesCS3B01G251800 chr5B 520855737 520856337 600 False 955.0 955 95.522 1883 2478 1 chr5B.!!$F2 595
15 TraesCS3B01G251800 chr5B 570514968 570515569 601 False 946.0 946 95.191 1883 2478 1 chr5B.!!$F3 595
16 TraesCS3B01G251800 chr6B 339327264 339327861 597 False 959.0 959 95.681 1883 2478 1 chr6B.!!$F1 595
17 TraesCS3B01G251800 chr5A 608647201 608647801 600 True 950.0 950 95.357 1884 2478 1 chr5A.!!$R2 594
18 TraesCS3B01G251800 chr2B 263292507 263293115 608 True 933.0 933 94.581 1884 2482 1 chr2B.!!$R1 598

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
256 257 0.03601 AAAGGAGATGTGTCGGGCTG 60.036 55.0 0.0 0.0 0.0 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1877 2234 0.846015 CATTGCCATCCCTAGACCCA 59.154 55.0 0.0 0.0 0.0 4.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.846423 TTTTATATAAATGGGAATGGGTGTGT 57.154 30.769 8.70 0.00 0.00 3.72
27 28 8.846423 TTTATATAAATGGGAATGGGTGTGTT 57.154 30.769 3.71 0.00 0.00 3.32
28 29 6.729690 ATATAAATGGGAATGGGTGTGTTG 57.270 37.500 0.00 0.00 0.00 3.33
29 30 1.643310 AATGGGAATGGGTGTGTTGG 58.357 50.000 0.00 0.00 0.00 3.77
30 31 0.486879 ATGGGAATGGGTGTGTTGGT 59.513 50.000 0.00 0.00 0.00 3.67
31 32 0.468958 TGGGAATGGGTGTGTTGGTG 60.469 55.000 0.00 0.00 0.00 4.17
32 33 1.665442 GGAATGGGTGTGTTGGTGC 59.335 57.895 0.00 0.00 0.00 5.01
33 34 1.665442 GAATGGGTGTGTTGGTGCC 59.335 57.895 0.00 0.00 0.00 5.01
34 35 0.827507 GAATGGGTGTGTTGGTGCCT 60.828 55.000 0.00 0.00 0.00 4.75
35 36 1.114722 AATGGGTGTGTTGGTGCCTG 61.115 55.000 0.00 0.00 0.00 4.85
36 37 2.912025 GGGTGTGTTGGTGCCTGG 60.912 66.667 0.00 0.00 0.00 4.45
37 38 2.123897 GGTGTGTTGGTGCCTGGT 60.124 61.111 0.00 0.00 0.00 4.00
38 39 2.489275 GGTGTGTTGGTGCCTGGTG 61.489 63.158 0.00 0.00 0.00 4.17
39 40 2.123939 TGTGTTGGTGCCTGGTGG 60.124 61.111 0.00 0.00 0.00 4.61
40 41 2.123897 GTGTTGGTGCCTGGTGGT 60.124 61.111 0.00 0.00 35.27 4.16
41 42 1.149627 GTGTTGGTGCCTGGTGGTA 59.850 57.895 0.00 0.00 35.27 3.25
42 43 1.149627 TGTTGGTGCCTGGTGGTAC 59.850 57.895 0.00 0.00 46.36 3.34
43 44 1.349542 TGTTGGTGCCTGGTGGTACT 61.350 55.000 0.00 0.00 46.31 2.73
44 45 0.179001 GTTGGTGCCTGGTGGTACTT 60.179 55.000 0.00 0.00 46.31 2.24
45 46 1.072648 GTTGGTGCCTGGTGGTACTTA 59.927 52.381 0.00 0.00 46.31 2.24
46 47 0.981183 TGGTGCCTGGTGGTACTTAG 59.019 55.000 0.00 0.00 46.31 2.18
47 48 0.981943 GGTGCCTGGTGGTACTTAGT 59.018 55.000 0.00 0.00 46.31 2.24
48 49 2.181975 GGTGCCTGGTGGTACTTAGTA 58.818 52.381 0.00 0.00 46.31 1.82
49 50 2.093816 GGTGCCTGGTGGTACTTAGTAC 60.094 54.545 13.66 13.66 46.31 2.73
50 51 2.564062 GTGCCTGGTGGTACTTAGTACA 59.436 50.000 22.00 7.54 44.16 2.90
51 52 3.197116 GTGCCTGGTGGTACTTAGTACAT 59.803 47.826 22.00 0.00 44.16 2.29
52 53 3.449737 TGCCTGGTGGTACTTAGTACATC 59.550 47.826 22.00 14.04 40.41 3.06
53 54 3.449737 GCCTGGTGGTACTTAGTACATCA 59.550 47.826 22.00 15.10 40.41 3.07
54 55 4.679905 GCCTGGTGGTACTTAGTACATCAC 60.680 50.000 22.00 19.53 40.41 3.06
55 56 4.710375 CCTGGTGGTACTTAGTACATCACT 59.290 45.833 22.00 0.00 40.41 3.41
56 57 5.889853 CCTGGTGGTACTTAGTACATCACTA 59.110 44.000 22.00 17.29 40.41 2.74
57 58 6.183360 CCTGGTGGTACTTAGTACATCACTAC 60.183 46.154 22.00 7.40 39.52 2.73
58 59 5.653769 TGGTGGTACTTAGTACATCACTACC 59.346 44.000 22.00 15.57 39.52 3.18
59 60 5.068329 GGTGGTACTTAGTACATCACTACCC 59.932 48.000 22.00 7.39 39.52 3.69
60 61 5.890419 GTGGTACTTAGTACATCACTACCCT 59.110 44.000 22.00 0.00 39.52 4.34
61 62 5.889853 TGGTACTTAGTACATCACTACCCTG 59.110 44.000 22.00 0.00 39.52 4.45
62 63 5.890419 GGTACTTAGTACATCACTACCCTGT 59.110 44.000 22.00 0.00 39.52 4.00
63 64 6.379417 GGTACTTAGTACATCACTACCCTGTT 59.621 42.308 22.00 0.00 39.52 3.16
64 65 6.527057 ACTTAGTACATCACTACCCTGTTC 57.473 41.667 0.00 0.00 39.52 3.18
65 66 6.254522 ACTTAGTACATCACTACCCTGTTCT 58.745 40.000 0.00 0.00 39.52 3.01
66 67 6.724905 ACTTAGTACATCACTACCCTGTTCTT 59.275 38.462 0.00 0.00 39.52 2.52
67 68 5.407407 AGTACATCACTACCCTGTTCTTG 57.593 43.478 0.00 0.00 34.98 3.02
68 69 3.059352 ACATCACTACCCTGTTCTTGC 57.941 47.619 0.00 0.00 0.00 4.01
69 70 2.371841 ACATCACTACCCTGTTCTTGCA 59.628 45.455 0.00 0.00 0.00 4.08
70 71 3.009473 ACATCACTACCCTGTTCTTGCAT 59.991 43.478 0.00 0.00 0.00 3.96
71 72 4.225042 ACATCACTACCCTGTTCTTGCATA 59.775 41.667 0.00 0.00 0.00 3.14
72 73 4.202245 TCACTACCCTGTTCTTGCATAC 57.798 45.455 0.00 0.00 0.00 2.39
73 74 3.055385 TCACTACCCTGTTCTTGCATACC 60.055 47.826 0.00 0.00 0.00 2.73
74 75 3.055094 CACTACCCTGTTCTTGCATACCT 60.055 47.826 0.00 0.00 0.00 3.08
75 76 4.161565 CACTACCCTGTTCTTGCATACCTA 59.838 45.833 0.00 0.00 0.00 3.08
76 77 3.914426 ACCCTGTTCTTGCATACCTAG 57.086 47.619 0.00 0.00 0.00 3.02
77 78 3.182152 ACCCTGTTCTTGCATACCTAGT 58.818 45.455 0.00 0.00 0.00 2.57
78 79 3.197983 ACCCTGTTCTTGCATACCTAGTC 59.802 47.826 0.00 0.00 0.00 2.59
79 80 3.432326 CCCTGTTCTTGCATACCTAGTCC 60.432 52.174 0.00 0.00 0.00 3.85
80 81 3.197766 CCTGTTCTTGCATACCTAGTCCA 59.802 47.826 0.00 0.00 0.00 4.02
81 82 4.141620 CCTGTTCTTGCATACCTAGTCCAT 60.142 45.833 0.00 0.00 0.00 3.41
82 83 5.431765 CTGTTCTTGCATACCTAGTCCATT 58.568 41.667 0.00 0.00 0.00 3.16
83 84 5.815581 TGTTCTTGCATACCTAGTCCATTT 58.184 37.500 0.00 0.00 0.00 2.32
84 85 6.245408 TGTTCTTGCATACCTAGTCCATTTT 58.755 36.000 0.00 0.00 0.00 1.82
85 86 6.374333 TGTTCTTGCATACCTAGTCCATTTTC 59.626 38.462 0.00 0.00 0.00 2.29
86 87 5.437060 TCTTGCATACCTAGTCCATTTTCC 58.563 41.667 0.00 0.00 0.00 3.13
87 88 4.853468 TGCATACCTAGTCCATTTTCCA 57.147 40.909 0.00 0.00 0.00 3.53
88 89 4.523083 TGCATACCTAGTCCATTTTCCAC 58.477 43.478 0.00 0.00 0.00 4.02
89 90 3.883489 GCATACCTAGTCCATTTTCCACC 59.117 47.826 0.00 0.00 0.00 4.61
90 91 4.385310 GCATACCTAGTCCATTTTCCACCT 60.385 45.833 0.00 0.00 0.00 4.00
91 92 5.755849 CATACCTAGTCCATTTTCCACCTT 58.244 41.667 0.00 0.00 0.00 3.50
92 93 4.302559 ACCTAGTCCATTTTCCACCTTC 57.697 45.455 0.00 0.00 0.00 3.46
93 94 3.010250 ACCTAGTCCATTTTCCACCTTCC 59.990 47.826 0.00 0.00 0.00 3.46
94 95 3.267031 CCTAGTCCATTTTCCACCTTCCT 59.733 47.826 0.00 0.00 0.00 3.36
95 96 4.473559 CCTAGTCCATTTTCCACCTTCCTA 59.526 45.833 0.00 0.00 0.00 2.94
96 97 5.045140 CCTAGTCCATTTTCCACCTTCCTAA 60.045 44.000 0.00 0.00 0.00 2.69
97 98 5.333566 AGTCCATTTTCCACCTTCCTAAA 57.666 39.130 0.00 0.00 0.00 1.85
98 99 5.711698 AGTCCATTTTCCACCTTCCTAAAA 58.288 37.500 0.00 0.00 0.00 1.52
99 100 6.322931 AGTCCATTTTCCACCTTCCTAAAAT 58.677 36.000 0.00 0.00 33.07 1.82
100 101 6.437477 AGTCCATTTTCCACCTTCCTAAAATC 59.563 38.462 0.00 0.00 31.05 2.17
101 102 6.210584 GTCCATTTTCCACCTTCCTAAAATCA 59.789 38.462 0.00 0.00 31.05 2.57
102 103 6.784969 TCCATTTTCCACCTTCCTAAAATCAA 59.215 34.615 0.00 0.00 31.05 2.57
103 104 6.873605 CCATTTTCCACCTTCCTAAAATCAAC 59.126 38.462 0.00 0.00 31.05 3.18
104 105 7.441017 CATTTTCCACCTTCCTAAAATCAACA 58.559 34.615 0.00 0.00 31.05 3.33
105 106 7.425224 TTTTCCACCTTCCTAAAATCAACAA 57.575 32.000 0.00 0.00 0.00 2.83
106 107 7.610580 TTTCCACCTTCCTAAAATCAACAAT 57.389 32.000 0.00 0.00 0.00 2.71
107 108 6.588719 TCCACCTTCCTAAAATCAACAATG 57.411 37.500 0.00 0.00 0.00 2.82
108 109 6.310941 TCCACCTTCCTAAAATCAACAATGA 58.689 36.000 0.00 0.00 40.57 2.57
109 110 6.780031 TCCACCTTCCTAAAATCAACAATGAA 59.220 34.615 0.00 0.00 39.49 2.57
110 111 7.288852 TCCACCTTCCTAAAATCAACAATGAAA 59.711 33.333 0.00 0.00 39.49 2.69
111 112 7.930865 CCACCTTCCTAAAATCAACAATGAAAA 59.069 33.333 0.00 0.00 39.49 2.29
112 113 9.323985 CACCTTCCTAAAATCAACAATGAAAAA 57.676 29.630 0.00 0.00 39.49 1.94
134 135 7.549615 AAAACAAACTAGCTAAAAGTCGTCT 57.450 32.000 0.00 0.00 0.00 4.18
135 136 6.766452 AACAAACTAGCTAAAAGTCGTCTC 57.234 37.500 0.00 0.00 0.00 3.36
136 137 5.228665 ACAAACTAGCTAAAAGTCGTCTCC 58.771 41.667 0.00 0.00 0.00 3.71
137 138 5.010820 ACAAACTAGCTAAAAGTCGTCTCCT 59.989 40.000 0.00 0.00 0.00 3.69
138 139 5.725325 AACTAGCTAAAAGTCGTCTCCTT 57.275 39.130 0.00 0.00 0.00 3.36
139 140 6.830873 AACTAGCTAAAAGTCGTCTCCTTA 57.169 37.500 0.00 0.00 0.00 2.69
140 141 7.407393 AACTAGCTAAAAGTCGTCTCCTTAT 57.593 36.000 0.00 0.00 0.00 1.73
141 142 7.407393 ACTAGCTAAAAGTCGTCTCCTTATT 57.593 36.000 0.00 0.00 0.00 1.40
142 143 7.838884 ACTAGCTAAAAGTCGTCTCCTTATTT 58.161 34.615 0.00 0.00 0.00 1.40
143 144 7.975058 ACTAGCTAAAAGTCGTCTCCTTATTTC 59.025 37.037 0.00 0.00 0.00 2.17
144 145 6.107343 AGCTAAAAGTCGTCTCCTTATTTCC 58.893 40.000 0.00 0.00 0.00 3.13
145 146 5.873164 GCTAAAAGTCGTCTCCTTATTTCCA 59.127 40.000 0.00 0.00 0.00 3.53
146 147 6.183360 GCTAAAAGTCGTCTCCTTATTTCCAC 60.183 42.308 0.00 0.00 0.00 4.02
147 148 3.889520 AGTCGTCTCCTTATTTCCACC 57.110 47.619 0.00 0.00 0.00 4.61
148 149 3.442076 AGTCGTCTCCTTATTTCCACCT 58.558 45.455 0.00 0.00 0.00 4.00
149 150 3.838903 AGTCGTCTCCTTATTTCCACCTT 59.161 43.478 0.00 0.00 0.00 3.50
150 151 4.081586 AGTCGTCTCCTTATTTCCACCTTC 60.082 45.833 0.00 0.00 0.00 3.46
151 152 3.197116 TCGTCTCCTTATTTCCACCTTCC 59.803 47.826 0.00 0.00 0.00 3.46
152 153 3.197983 CGTCTCCTTATTTCCACCTTCCT 59.802 47.826 0.00 0.00 0.00 3.36
153 154 4.404715 CGTCTCCTTATTTCCACCTTCCTA 59.595 45.833 0.00 0.00 0.00 2.94
154 155 5.672503 GTCTCCTTATTTCCACCTTCCTAC 58.327 45.833 0.00 0.00 0.00 3.18
155 156 5.189145 GTCTCCTTATTTCCACCTTCCTACA 59.811 44.000 0.00 0.00 0.00 2.74
156 157 5.189145 TCTCCTTATTTCCACCTTCCTACAC 59.811 44.000 0.00 0.00 0.00 2.90
157 158 4.847512 TCCTTATTTCCACCTTCCTACACA 59.152 41.667 0.00 0.00 0.00 3.72
158 159 5.491078 TCCTTATTTCCACCTTCCTACACAT 59.509 40.000 0.00 0.00 0.00 3.21
159 160 6.011981 TCCTTATTTCCACCTTCCTACACATT 60.012 38.462 0.00 0.00 0.00 2.71
160 161 6.663523 CCTTATTTCCACCTTCCTACACATTT 59.336 38.462 0.00 0.00 0.00 2.32
161 162 7.148069 CCTTATTTCCACCTTCCTACACATTTC 60.148 40.741 0.00 0.00 0.00 2.17
162 163 4.993705 TTCCACCTTCCTACACATTTCT 57.006 40.909 0.00 0.00 0.00 2.52
163 164 4.553330 TCCACCTTCCTACACATTTCTC 57.447 45.455 0.00 0.00 0.00 2.87
164 165 3.907474 TCCACCTTCCTACACATTTCTCA 59.093 43.478 0.00 0.00 0.00 3.27
165 166 4.349636 TCCACCTTCCTACACATTTCTCAA 59.650 41.667 0.00 0.00 0.00 3.02
166 167 4.455877 CCACCTTCCTACACATTTCTCAAC 59.544 45.833 0.00 0.00 0.00 3.18
167 168 5.063204 CACCTTCCTACACATTTCTCAACA 58.937 41.667 0.00 0.00 0.00 3.33
168 169 5.180117 CACCTTCCTACACATTTCTCAACAG 59.820 44.000 0.00 0.00 0.00 3.16
169 170 5.071788 ACCTTCCTACACATTTCTCAACAGA 59.928 40.000 0.00 0.00 0.00 3.41
170 171 5.997746 CCTTCCTACACATTTCTCAACAGAA 59.002 40.000 0.00 0.00 36.82 3.02
184 185 9.528018 TTTCTCAACAGAAAATAACAATGGAAC 57.472 29.630 0.00 0.00 44.24 3.62
185 186 8.690884 TTCTCAACAGAAAATAACAATGGAACA 58.309 29.630 0.00 0.00 38.20 3.18
198 199 2.957402 TGGAACACAATGAAGCTCCT 57.043 45.000 0.00 0.00 0.00 3.69
200 201 4.365514 TGGAACACAATGAAGCTCCTAA 57.634 40.909 0.00 0.00 0.00 2.69
201 202 4.326826 TGGAACACAATGAAGCTCCTAAG 58.673 43.478 0.00 0.00 0.00 2.18
202 203 4.041567 TGGAACACAATGAAGCTCCTAAGA 59.958 41.667 0.00 0.00 0.00 2.10
203 204 5.003804 GGAACACAATGAAGCTCCTAAGAA 58.996 41.667 0.00 0.00 0.00 2.52
204 205 5.473504 GGAACACAATGAAGCTCCTAAGAAA 59.526 40.000 0.00 0.00 0.00 2.52
205 206 6.151817 GGAACACAATGAAGCTCCTAAGAAAT 59.848 38.462 0.00 0.00 0.00 2.17
206 207 7.309438 GGAACACAATGAAGCTCCTAAGAAATT 60.309 37.037 0.00 0.00 0.00 1.82
207 208 8.635765 AACACAATGAAGCTCCTAAGAAATTA 57.364 30.769 0.00 0.00 0.00 1.40
208 209 8.635765 ACACAATGAAGCTCCTAAGAAATTAA 57.364 30.769 0.00 0.00 0.00 1.40
209 210 8.515414 ACACAATGAAGCTCCTAAGAAATTAAC 58.485 33.333 0.00 0.00 0.00 2.01
210 211 8.734386 CACAATGAAGCTCCTAAGAAATTAACT 58.266 33.333 0.00 0.00 0.00 2.24
211 212 9.301897 ACAATGAAGCTCCTAAGAAATTAACTT 57.698 29.630 0.00 3.86 0.00 2.66
212 213 9.565213 CAATGAAGCTCCTAAGAAATTAACTTG 57.435 33.333 7.71 0.00 0.00 3.16
213 214 9.520515 AATGAAGCTCCTAAGAAATTAACTTGA 57.479 29.630 7.71 0.00 0.00 3.02
214 215 8.324163 TGAAGCTCCTAAGAAATTAACTTGAC 57.676 34.615 7.71 0.00 0.00 3.18
215 216 7.390718 TGAAGCTCCTAAGAAATTAACTTGACC 59.609 37.037 7.71 0.00 0.00 4.02
216 217 7.021998 AGCTCCTAAGAAATTAACTTGACCT 57.978 36.000 7.71 0.00 0.00 3.85
217 218 7.462590 AGCTCCTAAGAAATTAACTTGACCTT 58.537 34.615 7.71 0.00 0.00 3.50
218 219 7.945109 AGCTCCTAAGAAATTAACTTGACCTTT 59.055 33.333 7.71 0.00 0.00 3.11
219 220 8.577296 GCTCCTAAGAAATTAACTTGACCTTTT 58.423 33.333 7.71 0.00 0.00 2.27
222 223 8.978539 CCTAAGAAATTAACTTGACCTTTTTGC 58.021 33.333 7.71 0.00 0.00 3.68
223 224 9.750125 CTAAGAAATTAACTTGACCTTTTTGCT 57.250 29.630 7.71 0.00 0.00 3.91
230 231 9.660180 ATTAACTTGACCTTTTTGCTAAAAACA 57.340 25.926 7.45 5.74 35.57 2.83
231 232 9.660180 TTAACTTGACCTTTTTGCTAAAAACAT 57.340 25.926 7.45 0.00 35.57 2.71
232 233 7.770801 ACTTGACCTTTTTGCTAAAAACATC 57.229 32.000 7.45 6.04 35.57 3.06
233 234 7.555965 ACTTGACCTTTTTGCTAAAAACATCT 58.444 30.769 7.45 0.00 35.57 2.90
234 235 8.691797 ACTTGACCTTTTTGCTAAAAACATCTA 58.308 29.630 7.45 2.67 35.57 1.98
235 236 9.528018 CTTGACCTTTTTGCTAAAAACATCTAA 57.472 29.630 7.45 0.00 35.57 2.10
236 237 9.528018 TTGACCTTTTTGCTAAAAACATCTAAG 57.472 29.630 7.45 0.00 35.57 2.18
237 238 8.908903 TGACCTTTTTGCTAAAAACATCTAAGA 58.091 29.630 7.45 0.00 35.57 2.10
238 239 9.744468 GACCTTTTTGCTAAAAACATCTAAGAA 57.256 29.630 7.45 0.00 35.57 2.52
243 244 9.965824 TTTTGCTAAAAACATCTAAGAAAGGAG 57.034 29.630 0.00 0.00 30.24 3.69
244 245 8.918202 TTGCTAAAAACATCTAAGAAAGGAGA 57.082 30.769 0.00 0.00 0.00 3.71
245 246 9.520515 TTGCTAAAAACATCTAAGAAAGGAGAT 57.479 29.630 0.00 0.00 32.48 2.75
252 253 4.720649 TCTAAGAAAGGAGATGTGTCGG 57.279 45.455 0.00 0.00 0.00 4.79
253 254 2.770164 AAGAAAGGAGATGTGTCGGG 57.230 50.000 0.00 0.00 0.00 5.14
254 255 0.250513 AGAAAGGAGATGTGTCGGGC 59.749 55.000 0.00 0.00 0.00 6.13
255 256 0.250513 GAAAGGAGATGTGTCGGGCT 59.749 55.000 0.00 0.00 0.00 5.19
256 257 0.036010 AAAGGAGATGTGTCGGGCTG 60.036 55.000 0.00 0.00 0.00 4.85
257 258 1.194781 AAGGAGATGTGTCGGGCTGT 61.195 55.000 0.00 0.00 0.00 4.40
258 259 0.324368 AGGAGATGTGTCGGGCTGTA 60.324 55.000 0.00 0.00 0.00 2.74
259 260 0.179108 GGAGATGTGTCGGGCTGTAC 60.179 60.000 0.00 0.00 0.00 2.90
260 261 0.530744 GAGATGTGTCGGGCTGTACA 59.469 55.000 8.22 8.22 0.00 2.90
261 262 0.532573 AGATGTGTCGGGCTGTACAG 59.467 55.000 18.93 18.93 0.00 2.74
262 263 0.460284 GATGTGTCGGGCTGTACAGG 60.460 60.000 23.95 8.08 0.00 4.00
263 264 1.899437 ATGTGTCGGGCTGTACAGGG 61.899 60.000 23.95 1.01 0.00 4.45
264 265 3.702048 TGTCGGGCTGTACAGGGC 61.702 66.667 23.95 15.89 0.00 5.19
265 266 3.391382 GTCGGGCTGTACAGGGCT 61.391 66.667 23.95 0.00 0.00 5.19
266 267 2.606519 TCGGGCTGTACAGGGCTT 60.607 61.111 23.95 0.00 0.00 4.35
267 268 2.436646 CGGGCTGTACAGGGCTTG 60.437 66.667 23.95 10.06 0.00 4.01
268 269 2.954684 CGGGCTGTACAGGGCTTGA 61.955 63.158 23.95 0.00 0.00 3.02
269 270 1.378762 GGGCTGTACAGGGCTTGAA 59.621 57.895 23.95 0.00 0.00 2.69
270 271 0.678048 GGGCTGTACAGGGCTTGAAG 60.678 60.000 23.95 0.00 0.00 3.02
271 272 0.678048 GGCTGTACAGGGCTTGAAGG 60.678 60.000 23.95 0.00 0.00 3.46
272 273 0.324943 GCTGTACAGGGCTTGAAGGA 59.675 55.000 23.95 0.00 0.00 3.36
273 274 1.677217 GCTGTACAGGGCTTGAAGGAG 60.677 57.143 23.95 0.00 0.00 3.69
274 275 0.324943 TGTACAGGGCTTGAAGGAGC 59.675 55.000 2.65 0.00 41.96 4.70
275 276 0.324943 GTACAGGGCTTGAAGGAGCA 59.675 55.000 2.65 0.00 44.49 4.26
276 277 0.324943 TACAGGGCTTGAAGGAGCAC 59.675 55.000 2.65 0.00 46.51 4.40
278 279 2.747855 GGGCTTGAAGGAGCACGG 60.748 66.667 0.00 0.00 44.49 4.94
279 280 2.032681 GGCTTGAAGGAGCACGGT 59.967 61.111 0.00 0.00 44.49 4.83
280 281 1.600916 GGCTTGAAGGAGCACGGTT 60.601 57.895 0.00 0.00 44.49 4.44
281 282 1.576421 GCTTGAAGGAGCACGGTTG 59.424 57.895 0.00 0.00 42.25 3.77
282 283 1.166531 GCTTGAAGGAGCACGGTTGT 61.167 55.000 0.00 0.00 42.25 3.32
291 292 2.281070 CACGGTTGTGCAGCCTCT 60.281 61.111 3.70 0.00 39.67 3.69
292 293 2.281070 ACGGTTGTGCAGCCTCTG 60.281 61.111 3.70 0.00 34.12 3.35
293 294 2.281070 CGGTTGTGCAGCCTCTGT 60.281 61.111 3.70 0.00 33.43 3.41
294 295 2.610694 CGGTTGTGCAGCCTCTGTG 61.611 63.158 3.70 0.00 33.43 3.66
295 296 2.263741 GGTTGTGCAGCCTCTGTGG 61.264 63.158 0.00 0.00 39.35 4.17
296 297 1.227943 GTTGTGCAGCCTCTGTGGA 60.228 57.895 0.00 0.00 38.35 4.02
297 298 0.607489 GTTGTGCAGCCTCTGTGGAT 60.607 55.000 0.00 0.00 38.35 3.41
298 299 0.111061 TTGTGCAGCCTCTGTGGATT 59.889 50.000 0.00 0.00 38.35 3.01
299 300 0.607217 TGTGCAGCCTCTGTGGATTG 60.607 55.000 0.00 0.00 38.35 2.67
300 301 1.001764 TGCAGCCTCTGTGGATTGG 60.002 57.895 0.00 0.00 38.35 3.16
301 302 1.300963 GCAGCCTCTGTGGATTGGA 59.699 57.895 0.00 0.00 38.35 3.53
302 303 1.028868 GCAGCCTCTGTGGATTGGAC 61.029 60.000 0.00 0.00 38.35 4.02
303 304 0.617413 CAGCCTCTGTGGATTGGACT 59.383 55.000 0.00 0.00 38.35 3.85
304 305 0.617413 AGCCTCTGTGGATTGGACTG 59.383 55.000 0.00 0.00 38.35 3.51
305 306 0.615331 GCCTCTGTGGATTGGACTGA 59.385 55.000 0.00 0.00 38.35 3.41
306 307 1.406614 GCCTCTGTGGATTGGACTGAG 60.407 57.143 0.00 0.00 38.48 3.35
307 308 1.406614 CCTCTGTGGATTGGACTGAGC 60.407 57.143 0.00 0.00 37.81 4.26
308 309 1.277273 CTCTGTGGATTGGACTGAGCA 59.723 52.381 0.00 0.00 34.07 4.26
309 310 1.277273 TCTGTGGATTGGACTGAGCAG 59.723 52.381 0.00 0.00 0.00 4.24
310 311 1.277273 CTGTGGATTGGACTGAGCAGA 59.723 52.381 4.21 0.00 0.00 4.26
311 312 1.002430 TGTGGATTGGACTGAGCAGAC 59.998 52.381 4.21 0.00 0.00 3.51
312 313 0.615331 TGGATTGGACTGAGCAGACC 59.385 55.000 11.27 11.27 42.35 3.85
315 316 3.051210 TGGACTGAGCAGACCACG 58.949 61.111 15.83 0.00 45.63 4.94
316 317 1.530655 TGGACTGAGCAGACCACGA 60.531 57.895 15.83 0.00 45.63 4.35
317 318 0.900182 TGGACTGAGCAGACCACGAT 60.900 55.000 15.83 0.00 45.63 3.73
318 319 0.459237 GGACTGAGCAGACCACGATG 60.459 60.000 12.92 0.00 41.77 3.84
319 320 0.459237 GACTGAGCAGACCACGATGG 60.459 60.000 4.21 0.00 45.02 3.51
320 321 1.812922 CTGAGCAGACCACGATGGC 60.813 63.158 4.23 0.00 42.67 4.40
321 322 2.236223 CTGAGCAGACCACGATGGCT 62.236 60.000 4.23 0.00 42.67 4.75
322 323 1.078848 GAGCAGACCACGATGGCTT 60.079 57.895 4.23 0.00 42.67 4.35
323 324 0.175760 GAGCAGACCACGATGGCTTA 59.824 55.000 4.23 0.00 42.67 3.09
324 325 0.833287 AGCAGACCACGATGGCTTAT 59.167 50.000 4.23 0.00 42.67 1.73
325 326 2.035961 GAGCAGACCACGATGGCTTATA 59.964 50.000 4.23 0.00 42.67 0.98
326 327 2.434336 AGCAGACCACGATGGCTTATAA 59.566 45.455 4.23 0.00 42.67 0.98
352 353 8.603304 ACTGTTAGATGTGTATAGTCCCTTTTT 58.397 33.333 0.00 0.00 0.00 1.94
370 371 5.826208 CCTTTTTGGTATATCCCCAGTGTAC 59.174 44.000 0.00 0.00 32.49 2.90
442 443 5.282510 CCCTCAGTAAATACTAGTTGCTCG 58.717 45.833 0.00 0.00 34.13 5.03
512 513 2.918802 AACTCCGTGCCCGTACCA 60.919 61.111 0.00 0.00 0.00 3.25
525 526 0.890683 CGTACCAAGTCTACCCCGTT 59.109 55.000 0.00 0.00 0.00 4.44
560 561 0.105224 CCATCTCCAGCTGCTCTCTG 59.895 60.000 8.66 1.46 0.00 3.35
572 573 1.294659 GCTCTCTGGCCGTTGTCTTG 61.295 60.000 0.00 0.00 0.00 3.02
579 580 0.670854 GGCCGTTGTCTTGTCCTCTC 60.671 60.000 0.00 0.00 0.00 3.20
583 584 1.666311 CGTTGTCTTGTCCTCTCGTCC 60.666 57.143 0.00 0.00 0.00 4.79
589 590 4.176851 GTCCTCTCGTCCGGTCGC 62.177 72.222 16.54 0.00 0.00 5.19
591 592 4.180946 CCTCTCGTCCGGTCGCTG 62.181 72.222 16.54 11.27 0.00 5.18
592 593 4.838486 CTCTCGTCCGGTCGCTGC 62.838 72.222 16.54 0.00 0.00 5.25
612 613 1.003233 GTTCCTGGCCTCACTGGTC 60.003 63.158 3.32 0.00 41.87 4.02
614 615 4.767255 CCTGGCCTCACTGGTCGC 62.767 72.222 3.32 0.00 45.26 5.19
617 618 4.008933 GGCCTCACTGGTCGCTGT 62.009 66.667 0.00 0.00 38.35 4.40
676 677 3.082579 GCGCCCCTAGTCTGTCCTG 62.083 68.421 0.00 0.00 0.00 3.86
681 682 1.096416 CCCTAGTCTGTCCTGTCGTC 58.904 60.000 0.00 0.00 0.00 4.20
812 867 4.832608 CCGGCCCGTCCAGCTAAC 62.833 72.222 0.85 0.00 34.01 2.34
824 879 2.928416 AGCTAACGCTGTTGGTTCC 58.072 52.632 4.52 0.00 46.86 3.62
826 881 1.908066 GCTAACGCTGTTGGTTCCGG 61.908 60.000 0.00 0.00 0.00 5.14
827 882 0.601841 CTAACGCTGTTGGTTCCGGT 60.602 55.000 0.00 0.00 0.00 5.28
830 885 3.047877 GCTGTTGGTTCCGGTCGG 61.048 66.667 0.00 2.52 0.00 4.79
833 888 4.324991 GTTGGTTCCGGTCGGGCT 62.325 66.667 9.68 0.00 34.94 5.19
835 890 2.652095 TTGGTTCCGGTCGGGCTAG 61.652 63.158 9.68 0.00 34.94 3.42
836 891 4.525949 GGTTCCGGTCGGGCTAGC 62.526 72.222 6.04 6.04 34.94 3.42
837 892 4.525949 GTTCCGGTCGGGCTAGCC 62.526 72.222 26.55 26.55 34.94 3.93
838 893 4.772231 TTCCGGTCGGGCTAGCCT 62.772 66.667 32.18 0.00 36.10 4.58
849 1089 1.990060 GCTAGCCTGGTCCTGGTCA 60.990 63.158 15.72 3.91 0.00 4.02
870 1110 3.151022 CCCTCGTGCTCCTCCCTC 61.151 72.222 0.00 0.00 0.00 4.30
881 1121 3.898509 CTCCCTCGAGCGAGCCAG 61.899 72.222 13.86 7.91 40.69 4.85
908 1214 2.485795 GCGAGGGTCTCTGCTCGAT 61.486 63.158 0.00 0.00 41.24 3.59
930 1236 3.090532 ATTCGGGTCCCCTGCCTC 61.091 66.667 1.00 0.00 0.00 4.70
1110 1467 2.228103 CCATATGCGCGGACTTCTACTA 59.772 50.000 8.83 0.00 0.00 1.82
1173 1530 1.229177 TGCTCCAGTGGCTCCTACA 60.229 57.895 3.51 0.00 0.00 2.74
1176 1533 0.904865 CTCCAGTGGCTCCTACACCA 60.905 60.000 3.51 0.00 39.63 4.17
1290 1647 3.323403 AGCAGGTATCAGCCTATTCTGAC 59.677 47.826 0.00 0.00 44.88 3.51
1458 1815 4.580580 TCTTATCTCTGTCAGCGCTATCAA 59.419 41.667 10.99 0.00 0.00 2.57
1486 1843 6.842676 TCTGGTGATGCTCTCTACTTATCTA 58.157 40.000 0.00 0.00 0.00 1.98
1843 2200 1.077123 GTCGTCTGCTCGTCTCACTA 58.923 55.000 0.00 0.00 0.00 2.74
1844 2201 1.463831 GTCGTCTGCTCGTCTCACTAA 59.536 52.381 0.00 0.00 0.00 2.24
2324 2694 6.767902 TGCTTTGCAAACATGGGTAATTTTAA 59.232 30.769 8.05 0.00 34.76 1.52
2419 2791 2.026262 GTGATGGGTAAGCTCAAAGGGA 60.026 50.000 0.00 0.00 0.00 4.20
2514 2887 1.348064 ATGTTGAGAAGGGTCGGTCA 58.652 50.000 0.00 0.00 0.00 4.02
2549 2922 1.219393 GTGACTACTGCTCCAGGCC 59.781 63.158 0.00 0.00 40.92 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.445973 ACACACCCATTCCCATTTATATAAAAT 57.554 29.630 11.80 0.00 0.00 1.82
1 2 8.846423 ACACACCCATTCCCATTTATATAAAA 57.154 30.769 11.80 0.00 0.00 1.52
2 3 8.700051 CAACACACCCATTCCCATTTATATAAA 58.300 33.333 10.27 10.27 0.00 1.40
4 5 6.780031 CCAACACACCCATTCCCATTTATATA 59.220 38.462 0.00 0.00 0.00 0.86
5 6 5.602145 CCAACACACCCATTCCCATTTATAT 59.398 40.000 0.00 0.00 0.00 0.86
6 7 4.959210 CCAACACACCCATTCCCATTTATA 59.041 41.667 0.00 0.00 0.00 0.98
7 8 3.774216 CCAACACACCCATTCCCATTTAT 59.226 43.478 0.00 0.00 0.00 1.40
8 9 3.169099 CCAACACACCCATTCCCATTTA 58.831 45.455 0.00 0.00 0.00 1.40
10 11 1.132881 ACCAACACACCCATTCCCATT 60.133 47.619 0.00 0.00 0.00 3.16
11 12 0.486879 ACCAACACACCCATTCCCAT 59.513 50.000 0.00 0.00 0.00 4.00
12 13 0.468958 CACCAACACACCCATTCCCA 60.469 55.000 0.00 0.00 0.00 4.37
13 14 1.815817 GCACCAACACACCCATTCCC 61.816 60.000 0.00 0.00 0.00 3.97
14 15 1.665442 GCACCAACACACCCATTCC 59.335 57.895 0.00 0.00 0.00 3.01
15 16 0.827507 AGGCACCAACACACCCATTC 60.828 55.000 0.00 0.00 0.00 2.67
16 17 1.114722 CAGGCACCAACACACCCATT 61.115 55.000 0.00 0.00 0.00 3.16
17 18 1.531365 CAGGCACCAACACACCCAT 60.531 57.895 0.00 0.00 0.00 4.00
18 19 2.123939 CAGGCACCAACACACCCA 60.124 61.111 0.00 0.00 0.00 4.51
19 20 2.912025 CCAGGCACCAACACACCC 60.912 66.667 0.00 0.00 0.00 4.61
20 21 2.123897 ACCAGGCACCAACACACC 60.124 61.111 0.00 0.00 0.00 4.16
21 22 2.489275 CCACCAGGCACCAACACAC 61.489 63.158 0.00 0.00 0.00 3.82
22 23 1.636769 TACCACCAGGCACCAACACA 61.637 55.000 0.00 0.00 39.06 3.72
23 24 1.149627 TACCACCAGGCACCAACAC 59.850 57.895 0.00 0.00 39.06 3.32
24 25 1.149627 GTACCACCAGGCACCAACA 59.850 57.895 0.00 0.00 39.06 3.33
25 26 0.179001 AAGTACCACCAGGCACCAAC 60.179 55.000 0.00 0.00 39.06 3.77
26 27 1.349688 CTAAGTACCACCAGGCACCAA 59.650 52.381 0.00 0.00 39.06 3.67
27 28 0.981183 CTAAGTACCACCAGGCACCA 59.019 55.000 0.00 0.00 39.06 4.17
28 29 0.981943 ACTAAGTACCACCAGGCACC 59.018 55.000 0.00 0.00 39.06 5.01
29 30 2.564062 TGTACTAAGTACCACCAGGCAC 59.436 50.000 0.00 0.00 38.14 5.01
30 31 2.892118 TGTACTAAGTACCACCAGGCA 58.108 47.619 0.00 0.00 38.14 4.75
31 32 3.449737 TGATGTACTAAGTACCACCAGGC 59.550 47.826 0.00 0.00 38.14 4.85
32 33 4.710375 AGTGATGTACTAAGTACCACCAGG 59.290 45.833 0.00 0.00 38.14 4.45
33 34 5.916661 AGTGATGTACTAAGTACCACCAG 57.083 43.478 0.00 0.00 38.14 4.00
34 35 5.653769 GGTAGTGATGTACTAAGTACCACCA 59.346 44.000 16.08 0.00 43.24 4.17
35 36 5.068329 GGGTAGTGATGTACTAAGTACCACC 59.932 48.000 19.73 10.23 43.24 4.61
36 37 5.890419 AGGGTAGTGATGTACTAAGTACCAC 59.110 44.000 19.73 13.14 43.24 4.16
37 38 5.889853 CAGGGTAGTGATGTACTAAGTACCA 59.110 44.000 19.73 0.00 43.24 3.25
38 39 5.890419 ACAGGGTAGTGATGTACTAAGTACC 59.110 44.000 14.06 14.06 43.24 3.34
39 40 7.338957 AGAACAGGGTAGTGATGTACTAAGTAC 59.661 40.741 0.00 0.00 43.24 2.73
40 41 7.408543 AGAACAGGGTAGTGATGTACTAAGTA 58.591 38.462 0.00 0.00 43.24 2.24
41 42 6.254522 AGAACAGGGTAGTGATGTACTAAGT 58.745 40.000 0.00 0.00 43.24 2.24
42 43 6.777213 AGAACAGGGTAGTGATGTACTAAG 57.223 41.667 0.00 0.00 43.24 2.18
43 44 6.573680 GCAAGAACAGGGTAGTGATGTACTAA 60.574 42.308 0.00 0.00 43.24 2.24
44 45 5.105473 GCAAGAACAGGGTAGTGATGTACTA 60.105 44.000 0.00 0.00 40.89 1.82
45 46 4.322801 GCAAGAACAGGGTAGTGATGTACT 60.323 45.833 0.00 0.00 43.56 2.73
46 47 3.933332 GCAAGAACAGGGTAGTGATGTAC 59.067 47.826 0.00 0.00 0.00 2.90
47 48 3.580895 TGCAAGAACAGGGTAGTGATGTA 59.419 43.478 0.00 0.00 0.00 2.29
48 49 2.371841 TGCAAGAACAGGGTAGTGATGT 59.628 45.455 0.00 0.00 0.00 3.06
49 50 3.057969 TGCAAGAACAGGGTAGTGATG 57.942 47.619 0.00 0.00 0.00 3.07
50 51 4.384208 GGTATGCAAGAACAGGGTAGTGAT 60.384 45.833 0.00 0.00 0.00 3.06
51 52 3.055385 GGTATGCAAGAACAGGGTAGTGA 60.055 47.826 0.00 0.00 0.00 3.41
52 53 3.055094 AGGTATGCAAGAACAGGGTAGTG 60.055 47.826 0.00 0.00 0.00 2.74
53 54 3.182152 AGGTATGCAAGAACAGGGTAGT 58.818 45.455 0.00 0.00 0.00 2.73
54 55 3.914426 AGGTATGCAAGAACAGGGTAG 57.086 47.619 0.00 0.00 0.00 3.18
55 56 4.359105 ACTAGGTATGCAAGAACAGGGTA 58.641 43.478 0.00 0.00 0.00 3.69
56 57 3.182152 ACTAGGTATGCAAGAACAGGGT 58.818 45.455 0.00 0.00 0.00 4.34
57 58 3.432326 GGACTAGGTATGCAAGAACAGGG 60.432 52.174 0.00 0.00 0.00 4.45
58 59 3.197766 TGGACTAGGTATGCAAGAACAGG 59.802 47.826 0.00 0.00 0.00 4.00
59 60 4.471904 TGGACTAGGTATGCAAGAACAG 57.528 45.455 0.00 0.00 0.00 3.16
60 61 5.435686 AATGGACTAGGTATGCAAGAACA 57.564 39.130 0.00 0.00 0.00 3.18
61 62 6.183360 GGAAAATGGACTAGGTATGCAAGAAC 60.183 42.308 0.00 0.00 0.00 3.01
62 63 5.885912 GGAAAATGGACTAGGTATGCAAGAA 59.114 40.000 0.00 0.00 0.00 2.52
63 64 5.045213 TGGAAAATGGACTAGGTATGCAAGA 60.045 40.000 0.00 0.00 0.00 3.02
64 65 5.066505 GTGGAAAATGGACTAGGTATGCAAG 59.933 44.000 0.00 0.00 0.00 4.01
65 66 4.947388 GTGGAAAATGGACTAGGTATGCAA 59.053 41.667 0.00 0.00 0.00 4.08
66 67 4.523083 GTGGAAAATGGACTAGGTATGCA 58.477 43.478 0.00 0.00 0.00 3.96
67 68 3.883489 GGTGGAAAATGGACTAGGTATGC 59.117 47.826 0.00 0.00 0.00 3.14
68 69 5.373812 AGGTGGAAAATGGACTAGGTATG 57.626 43.478 0.00 0.00 0.00 2.39
69 70 5.104067 GGAAGGTGGAAAATGGACTAGGTAT 60.104 44.000 0.00 0.00 0.00 2.73
70 71 4.226620 GGAAGGTGGAAAATGGACTAGGTA 59.773 45.833 0.00 0.00 0.00 3.08
71 72 3.010250 GGAAGGTGGAAAATGGACTAGGT 59.990 47.826 0.00 0.00 0.00 3.08
72 73 3.267031 AGGAAGGTGGAAAATGGACTAGG 59.733 47.826 0.00 0.00 0.00 3.02
73 74 4.576330 AGGAAGGTGGAAAATGGACTAG 57.424 45.455 0.00 0.00 0.00 2.57
74 75 6.457159 TTTAGGAAGGTGGAAAATGGACTA 57.543 37.500 0.00 0.00 0.00 2.59
75 76 5.333566 TTTAGGAAGGTGGAAAATGGACT 57.666 39.130 0.00 0.00 0.00 3.85
76 77 6.210584 TGATTTTAGGAAGGTGGAAAATGGAC 59.789 38.462 0.00 0.00 32.94 4.02
77 78 6.318913 TGATTTTAGGAAGGTGGAAAATGGA 58.681 36.000 0.00 0.00 32.94 3.41
78 79 6.603940 TGATTTTAGGAAGGTGGAAAATGG 57.396 37.500 0.00 0.00 32.94 3.16
79 80 7.441017 TGTTGATTTTAGGAAGGTGGAAAATG 58.559 34.615 0.00 0.00 32.94 2.32
80 81 7.610580 TGTTGATTTTAGGAAGGTGGAAAAT 57.389 32.000 0.00 0.00 34.91 1.82
81 82 7.425224 TTGTTGATTTTAGGAAGGTGGAAAA 57.575 32.000 0.00 0.00 0.00 2.29
82 83 7.288852 TCATTGTTGATTTTAGGAAGGTGGAAA 59.711 33.333 0.00 0.00 0.00 3.13
83 84 6.780031 TCATTGTTGATTTTAGGAAGGTGGAA 59.220 34.615 0.00 0.00 0.00 3.53
84 85 6.310941 TCATTGTTGATTTTAGGAAGGTGGA 58.689 36.000 0.00 0.00 0.00 4.02
85 86 6.588719 TCATTGTTGATTTTAGGAAGGTGG 57.411 37.500 0.00 0.00 0.00 4.61
86 87 8.885494 TTTTCATTGTTGATTTTAGGAAGGTG 57.115 30.769 0.00 0.00 0.00 4.00
109 110 7.982224 AGACGACTTTTAGCTAGTTTGTTTTT 58.018 30.769 0.00 0.00 0.00 1.94
110 111 7.254692 GGAGACGACTTTTAGCTAGTTTGTTTT 60.255 37.037 0.00 0.00 0.00 2.43
111 112 6.202379 GGAGACGACTTTTAGCTAGTTTGTTT 59.798 38.462 0.00 0.00 0.00 2.83
112 113 5.695363 GGAGACGACTTTTAGCTAGTTTGTT 59.305 40.000 0.00 0.00 0.00 2.83
113 114 5.010820 AGGAGACGACTTTTAGCTAGTTTGT 59.989 40.000 0.00 0.00 0.00 2.83
114 115 5.471257 AGGAGACGACTTTTAGCTAGTTTG 58.529 41.667 0.00 0.00 0.00 2.93
115 116 5.725325 AGGAGACGACTTTTAGCTAGTTT 57.275 39.130 0.00 0.00 0.00 2.66
116 117 5.725325 AAGGAGACGACTTTTAGCTAGTT 57.275 39.130 0.00 0.00 0.00 2.24
117 118 7.407393 AATAAGGAGACGACTTTTAGCTAGT 57.593 36.000 0.00 0.00 0.00 2.57
118 119 7.435784 GGAAATAAGGAGACGACTTTTAGCTAG 59.564 40.741 0.00 0.00 0.00 3.42
119 120 7.093640 TGGAAATAAGGAGACGACTTTTAGCTA 60.094 37.037 0.00 0.00 0.00 3.32
120 121 6.107343 GGAAATAAGGAGACGACTTTTAGCT 58.893 40.000 0.00 0.00 0.00 3.32
121 122 5.873164 TGGAAATAAGGAGACGACTTTTAGC 59.127 40.000 0.00 0.00 0.00 3.09
122 123 6.313164 GGTGGAAATAAGGAGACGACTTTTAG 59.687 42.308 0.00 0.00 0.00 1.85
123 124 6.013984 AGGTGGAAATAAGGAGACGACTTTTA 60.014 38.462 0.00 0.00 0.00 1.52
124 125 5.001874 GGTGGAAATAAGGAGACGACTTTT 58.998 41.667 0.00 0.00 0.00 2.27
125 126 4.286291 AGGTGGAAATAAGGAGACGACTTT 59.714 41.667 0.00 0.00 0.00 2.66
126 127 3.838903 AGGTGGAAATAAGGAGACGACTT 59.161 43.478 0.00 0.00 0.00 3.01
127 128 3.442076 AGGTGGAAATAAGGAGACGACT 58.558 45.455 0.00 0.00 0.00 4.18
128 129 3.889520 AGGTGGAAATAAGGAGACGAC 57.110 47.619 0.00 0.00 0.00 4.34
129 130 3.197116 GGAAGGTGGAAATAAGGAGACGA 59.803 47.826 0.00 0.00 0.00 4.20
130 131 3.197983 AGGAAGGTGGAAATAAGGAGACG 59.802 47.826 0.00 0.00 0.00 4.18
131 132 4.846168 AGGAAGGTGGAAATAAGGAGAC 57.154 45.455 0.00 0.00 0.00 3.36
132 133 5.189145 GTGTAGGAAGGTGGAAATAAGGAGA 59.811 44.000 0.00 0.00 0.00 3.71
133 134 5.045869 TGTGTAGGAAGGTGGAAATAAGGAG 60.046 44.000 0.00 0.00 0.00 3.69
134 135 4.847512 TGTGTAGGAAGGTGGAAATAAGGA 59.152 41.667 0.00 0.00 0.00 3.36
135 136 5.174037 TGTGTAGGAAGGTGGAAATAAGG 57.826 43.478 0.00 0.00 0.00 2.69
136 137 7.611855 AGAAATGTGTAGGAAGGTGGAAATAAG 59.388 37.037 0.00 0.00 0.00 1.73
137 138 7.466804 AGAAATGTGTAGGAAGGTGGAAATAA 58.533 34.615 0.00 0.00 0.00 1.40
138 139 7.027874 AGAAATGTGTAGGAAGGTGGAAATA 57.972 36.000 0.00 0.00 0.00 1.40
139 140 5.892348 AGAAATGTGTAGGAAGGTGGAAAT 58.108 37.500 0.00 0.00 0.00 2.17
140 141 5.163141 TGAGAAATGTGTAGGAAGGTGGAAA 60.163 40.000 0.00 0.00 0.00 3.13
141 142 4.349636 TGAGAAATGTGTAGGAAGGTGGAA 59.650 41.667 0.00 0.00 0.00 3.53
142 143 3.907474 TGAGAAATGTGTAGGAAGGTGGA 59.093 43.478 0.00 0.00 0.00 4.02
143 144 4.286297 TGAGAAATGTGTAGGAAGGTGG 57.714 45.455 0.00 0.00 0.00 4.61
144 145 5.063204 TGTTGAGAAATGTGTAGGAAGGTG 58.937 41.667 0.00 0.00 0.00 4.00
145 146 5.071788 TCTGTTGAGAAATGTGTAGGAAGGT 59.928 40.000 0.00 0.00 0.00 3.50
146 147 5.551233 TCTGTTGAGAAATGTGTAGGAAGG 58.449 41.667 0.00 0.00 0.00 3.46
147 148 7.496529 TTTCTGTTGAGAAATGTGTAGGAAG 57.503 36.000 0.00 0.00 42.23 3.46
148 149 7.873719 TTTTCTGTTGAGAAATGTGTAGGAA 57.126 32.000 0.00 0.00 45.60 3.36
149 150 9.567776 TTATTTTCTGTTGAGAAATGTGTAGGA 57.432 29.630 0.00 0.00 45.60 2.94
150 151 9.612620 GTTATTTTCTGTTGAGAAATGTGTAGG 57.387 33.333 0.00 0.00 45.60 3.18
155 156 9.480053 CCATTGTTATTTTCTGTTGAGAAATGT 57.520 29.630 0.00 0.00 45.60 2.71
156 157 9.695526 TCCATTGTTATTTTCTGTTGAGAAATG 57.304 29.630 0.00 0.00 45.60 2.32
158 159 9.528018 GTTCCATTGTTATTTTCTGTTGAGAAA 57.472 29.630 0.00 0.00 44.83 2.52
159 160 8.690884 TGTTCCATTGTTATTTTCTGTTGAGAA 58.309 29.630 0.00 0.00 36.36 2.87
160 161 8.134895 GTGTTCCATTGTTATTTTCTGTTGAGA 58.865 33.333 0.00 0.00 0.00 3.27
161 162 7.920151 TGTGTTCCATTGTTATTTTCTGTTGAG 59.080 33.333 0.00 0.00 0.00 3.02
162 163 7.776107 TGTGTTCCATTGTTATTTTCTGTTGA 58.224 30.769 0.00 0.00 0.00 3.18
163 164 8.417780 TTGTGTTCCATTGTTATTTTCTGTTG 57.582 30.769 0.00 0.00 0.00 3.33
164 165 9.044150 CATTGTGTTCCATTGTTATTTTCTGTT 57.956 29.630 0.00 0.00 0.00 3.16
165 166 8.420222 TCATTGTGTTCCATTGTTATTTTCTGT 58.580 29.630 0.00 0.00 0.00 3.41
166 167 8.815141 TCATTGTGTTCCATTGTTATTTTCTG 57.185 30.769 0.00 0.00 0.00 3.02
167 168 9.480053 CTTCATTGTGTTCCATTGTTATTTTCT 57.520 29.630 0.00 0.00 0.00 2.52
168 169 8.223100 GCTTCATTGTGTTCCATTGTTATTTTC 58.777 33.333 0.00 0.00 0.00 2.29
169 170 7.933033 AGCTTCATTGTGTTCCATTGTTATTTT 59.067 29.630 0.00 0.00 0.00 1.82
170 171 7.444299 AGCTTCATTGTGTTCCATTGTTATTT 58.556 30.769 0.00 0.00 0.00 1.40
171 172 6.996509 AGCTTCATTGTGTTCCATTGTTATT 58.003 32.000 0.00 0.00 0.00 1.40
172 173 6.350445 GGAGCTTCATTGTGTTCCATTGTTAT 60.350 38.462 0.00 0.00 0.00 1.89
173 174 5.048083 GGAGCTTCATTGTGTTCCATTGTTA 60.048 40.000 0.00 0.00 0.00 2.41
174 175 4.262164 GGAGCTTCATTGTGTTCCATTGTT 60.262 41.667 0.00 0.00 0.00 2.83
175 176 3.256631 GGAGCTTCATTGTGTTCCATTGT 59.743 43.478 0.00 0.00 0.00 2.71
176 177 3.508793 AGGAGCTTCATTGTGTTCCATTG 59.491 43.478 13.83 0.00 0.00 2.82
177 178 3.771216 AGGAGCTTCATTGTGTTCCATT 58.229 40.909 13.83 0.00 0.00 3.16
178 179 3.446442 AGGAGCTTCATTGTGTTCCAT 57.554 42.857 13.83 2.31 0.00 3.41
179 180 2.957402 AGGAGCTTCATTGTGTTCCA 57.043 45.000 13.83 0.00 0.00 3.53
180 181 4.579869 TCTTAGGAGCTTCATTGTGTTCC 58.420 43.478 0.00 7.02 0.00 3.62
181 182 6.560253 TTTCTTAGGAGCTTCATTGTGTTC 57.440 37.500 0.00 0.00 0.00 3.18
182 183 7.530426 AATTTCTTAGGAGCTTCATTGTGTT 57.470 32.000 0.00 0.00 0.00 3.32
183 184 8.515414 GTTAATTTCTTAGGAGCTTCATTGTGT 58.485 33.333 0.00 0.00 0.00 3.72
184 185 8.734386 AGTTAATTTCTTAGGAGCTTCATTGTG 58.266 33.333 0.00 0.00 0.00 3.33
185 186 8.870075 AGTTAATTTCTTAGGAGCTTCATTGT 57.130 30.769 0.00 0.00 0.00 2.71
186 187 9.565213 CAAGTTAATTTCTTAGGAGCTTCATTG 57.435 33.333 0.00 0.00 0.00 2.82
187 188 9.520515 TCAAGTTAATTTCTTAGGAGCTTCATT 57.479 29.630 0.00 0.00 0.00 2.57
188 189 8.951243 GTCAAGTTAATTTCTTAGGAGCTTCAT 58.049 33.333 0.00 0.00 0.00 2.57
189 190 7.390718 GGTCAAGTTAATTTCTTAGGAGCTTCA 59.609 37.037 0.00 0.00 0.00 3.02
190 191 7.608376 AGGTCAAGTTAATTTCTTAGGAGCTTC 59.392 37.037 0.00 0.00 28.51 3.86
191 192 7.462590 AGGTCAAGTTAATTTCTTAGGAGCTT 58.537 34.615 0.00 0.00 28.51 3.74
192 193 7.021998 AGGTCAAGTTAATTTCTTAGGAGCT 57.978 36.000 0.00 0.00 0.00 4.09
193 194 7.689446 AAGGTCAAGTTAATTTCTTAGGAGC 57.311 36.000 0.00 0.00 0.00 4.70
196 197 8.978539 GCAAAAAGGTCAAGTTAATTTCTTAGG 58.021 33.333 0.00 0.00 0.00 2.69
197 198 9.750125 AGCAAAAAGGTCAAGTTAATTTCTTAG 57.250 29.630 0.00 0.00 0.00 2.18
204 205 9.660180 TGTTTTTAGCAAAAAGGTCAAGTTAAT 57.340 25.926 6.93 0.00 40.71 1.40
205 206 9.660180 ATGTTTTTAGCAAAAAGGTCAAGTTAA 57.340 25.926 6.93 0.00 40.71 2.01
206 207 9.308318 GATGTTTTTAGCAAAAAGGTCAAGTTA 57.692 29.630 6.93 0.00 40.71 2.24
207 208 8.040727 AGATGTTTTTAGCAAAAAGGTCAAGTT 58.959 29.630 6.93 0.00 40.71 2.66
208 209 7.555965 AGATGTTTTTAGCAAAAAGGTCAAGT 58.444 30.769 6.93 0.00 40.71 3.16
209 210 9.528018 TTAGATGTTTTTAGCAAAAAGGTCAAG 57.472 29.630 6.93 0.00 40.71 3.02
210 211 9.528018 CTTAGATGTTTTTAGCAAAAAGGTCAA 57.472 29.630 6.93 5.83 40.71 3.18
211 212 8.908903 TCTTAGATGTTTTTAGCAAAAAGGTCA 58.091 29.630 6.93 3.93 40.71 4.02
212 213 9.744468 TTCTTAGATGTTTTTAGCAAAAAGGTC 57.256 29.630 6.93 7.99 40.71 3.85
217 218 9.965824 CTCCTTTCTTAGATGTTTTTAGCAAAA 57.034 29.630 0.00 0.00 0.00 2.44
218 219 9.349713 TCTCCTTTCTTAGATGTTTTTAGCAAA 57.650 29.630 0.00 0.00 0.00 3.68
219 220 8.918202 TCTCCTTTCTTAGATGTTTTTAGCAA 57.082 30.769 0.00 0.00 0.00 3.91
220 221 8.950210 CATCTCCTTTCTTAGATGTTTTTAGCA 58.050 33.333 0.00 0.00 42.67 3.49
230 231 4.100189 CCCGACACATCTCCTTTCTTAGAT 59.900 45.833 0.00 0.00 32.63 1.98
231 232 3.447586 CCCGACACATCTCCTTTCTTAGA 59.552 47.826 0.00 0.00 0.00 2.10
232 233 3.786635 CCCGACACATCTCCTTTCTTAG 58.213 50.000 0.00 0.00 0.00 2.18
233 234 2.093658 GCCCGACACATCTCCTTTCTTA 60.094 50.000 0.00 0.00 0.00 2.10
234 235 1.339151 GCCCGACACATCTCCTTTCTT 60.339 52.381 0.00 0.00 0.00 2.52
235 236 0.250513 GCCCGACACATCTCCTTTCT 59.749 55.000 0.00 0.00 0.00 2.52
236 237 0.250513 AGCCCGACACATCTCCTTTC 59.749 55.000 0.00 0.00 0.00 2.62
237 238 0.036010 CAGCCCGACACATCTCCTTT 60.036 55.000 0.00 0.00 0.00 3.11
238 239 1.194781 ACAGCCCGACACATCTCCTT 61.195 55.000 0.00 0.00 0.00 3.36
239 240 0.324368 TACAGCCCGACACATCTCCT 60.324 55.000 0.00 0.00 0.00 3.69
240 241 0.179108 GTACAGCCCGACACATCTCC 60.179 60.000 0.00 0.00 0.00 3.71
241 242 0.530744 TGTACAGCCCGACACATCTC 59.469 55.000 0.00 0.00 0.00 2.75
242 243 0.532573 CTGTACAGCCCGACACATCT 59.467 55.000 10.54 0.00 0.00 2.90
243 244 0.460284 CCTGTACAGCCCGACACATC 60.460 60.000 17.86 0.00 0.00 3.06
244 245 1.596934 CCTGTACAGCCCGACACAT 59.403 57.895 17.86 0.00 0.00 3.21
245 246 2.579657 CCCTGTACAGCCCGACACA 61.580 63.158 17.86 0.00 0.00 3.72
246 247 2.264794 CCCTGTACAGCCCGACAC 59.735 66.667 17.86 0.00 0.00 3.67
247 248 3.702048 GCCCTGTACAGCCCGACA 61.702 66.667 17.86 0.00 0.00 4.35
248 249 2.955881 AAGCCCTGTACAGCCCGAC 61.956 63.158 17.86 4.26 0.00 4.79
249 250 2.606519 AAGCCCTGTACAGCCCGA 60.607 61.111 17.86 0.00 0.00 5.14
250 251 2.436646 CAAGCCCTGTACAGCCCG 60.437 66.667 17.86 7.81 0.00 6.13
251 252 0.678048 CTTCAAGCCCTGTACAGCCC 60.678 60.000 17.86 9.85 0.00 5.19
252 253 0.678048 CCTTCAAGCCCTGTACAGCC 60.678 60.000 17.86 10.20 0.00 4.85
253 254 0.324943 TCCTTCAAGCCCTGTACAGC 59.675 55.000 17.86 8.22 0.00 4.40
254 255 1.677217 GCTCCTTCAAGCCCTGTACAG 60.677 57.143 16.34 16.34 36.22 2.74
255 256 0.324943 GCTCCTTCAAGCCCTGTACA 59.675 55.000 0.00 0.00 36.22 2.90
256 257 0.324943 TGCTCCTTCAAGCCCTGTAC 59.675 55.000 0.00 0.00 41.77 2.90
257 258 0.324943 GTGCTCCTTCAAGCCCTGTA 59.675 55.000 0.00 0.00 41.77 2.74
258 259 1.073897 GTGCTCCTTCAAGCCCTGT 59.926 57.895 0.00 0.00 41.77 4.00
259 260 2.037136 CGTGCTCCTTCAAGCCCTG 61.037 63.158 0.00 0.00 41.77 4.45
260 261 2.348998 CGTGCTCCTTCAAGCCCT 59.651 61.111 0.00 0.00 41.77 5.19
261 262 2.747855 CCGTGCTCCTTCAAGCCC 60.748 66.667 0.00 0.00 41.77 5.19
262 263 1.600916 AACCGTGCTCCTTCAAGCC 60.601 57.895 0.00 0.00 41.77 4.35
263 264 1.166531 ACAACCGTGCTCCTTCAAGC 61.167 55.000 0.00 0.00 42.82 4.01
264 265 0.588252 CACAACCGTGCTCCTTCAAG 59.412 55.000 0.00 0.00 36.06 3.02
265 266 2.701587 CACAACCGTGCTCCTTCAA 58.298 52.632 0.00 0.00 36.06 2.69
266 267 4.454948 CACAACCGTGCTCCTTCA 57.545 55.556 0.00 0.00 36.06 3.02
274 275 2.281070 AGAGGCTGCACAACCGTG 60.281 61.111 0.50 0.00 46.56 4.94
275 276 2.281070 CAGAGGCTGCACAACCGT 60.281 61.111 0.50 0.00 0.00 4.83
276 277 2.281070 ACAGAGGCTGCACAACCG 60.281 61.111 0.50 0.00 34.37 4.44
277 278 2.263741 CCACAGAGGCTGCACAACC 61.264 63.158 0.50 0.00 34.37 3.77
278 279 0.607489 ATCCACAGAGGCTGCACAAC 60.607 55.000 0.50 0.00 37.29 3.32
279 280 0.111061 AATCCACAGAGGCTGCACAA 59.889 50.000 0.50 0.00 37.29 3.33
280 281 0.607217 CAATCCACAGAGGCTGCACA 60.607 55.000 0.50 0.00 37.29 4.57
281 282 1.310933 CCAATCCACAGAGGCTGCAC 61.311 60.000 0.50 0.00 37.29 4.57
282 283 1.001764 CCAATCCACAGAGGCTGCA 60.002 57.895 0.50 0.00 37.29 4.41
283 284 1.028868 GTCCAATCCACAGAGGCTGC 61.029 60.000 0.00 0.00 37.29 5.25
284 285 0.617413 AGTCCAATCCACAGAGGCTG 59.383 55.000 0.00 0.00 37.29 4.85
285 286 0.617413 CAGTCCAATCCACAGAGGCT 59.383 55.000 0.00 0.00 37.29 4.58
286 287 0.615331 TCAGTCCAATCCACAGAGGC 59.385 55.000 0.00 0.00 37.29 4.70
287 288 1.406614 GCTCAGTCCAATCCACAGAGG 60.407 57.143 0.00 0.00 39.47 3.69
288 289 1.277273 TGCTCAGTCCAATCCACAGAG 59.723 52.381 0.00 0.00 32.09 3.35
289 290 1.277273 CTGCTCAGTCCAATCCACAGA 59.723 52.381 0.00 0.00 0.00 3.41
290 291 1.277273 TCTGCTCAGTCCAATCCACAG 59.723 52.381 0.00 0.00 0.00 3.66
291 292 1.002430 GTCTGCTCAGTCCAATCCACA 59.998 52.381 0.00 0.00 0.00 4.17
292 293 1.677217 GGTCTGCTCAGTCCAATCCAC 60.677 57.143 8.02 0.00 36.76 4.02
293 294 0.615331 GGTCTGCTCAGTCCAATCCA 59.385 55.000 8.02 0.00 36.76 3.41
294 295 0.615331 TGGTCTGCTCAGTCCAATCC 59.385 55.000 12.28 1.95 42.21 3.01
295 296 1.731720 GTGGTCTGCTCAGTCCAATC 58.268 55.000 15.45 3.50 45.54 2.67
296 297 0.036952 CGTGGTCTGCTCAGTCCAAT 60.037 55.000 15.45 0.00 45.54 3.16
297 298 1.112916 TCGTGGTCTGCTCAGTCCAA 61.113 55.000 15.45 1.42 45.54 3.53
298 299 0.900182 ATCGTGGTCTGCTCAGTCCA 60.900 55.000 10.95 10.95 42.76 4.02
299 300 0.459237 CATCGTGGTCTGCTCAGTCC 60.459 60.000 6.27 6.27 37.19 3.85
300 301 0.459237 CCATCGTGGTCTGCTCAGTC 60.459 60.000 0.00 0.00 31.35 3.51
301 302 1.593787 CCATCGTGGTCTGCTCAGT 59.406 57.895 0.00 0.00 31.35 3.41
302 303 1.812922 GCCATCGTGGTCTGCTCAG 60.813 63.158 6.02 0.00 40.46 3.35
303 304 1.830587 AAGCCATCGTGGTCTGCTCA 61.831 55.000 6.02 0.00 40.46 4.26
304 305 0.175760 TAAGCCATCGTGGTCTGCTC 59.824 55.000 6.02 0.00 40.46 4.26
305 306 0.833287 ATAAGCCATCGTGGTCTGCT 59.167 50.000 6.02 0.00 40.46 4.24
306 307 2.526304 TATAAGCCATCGTGGTCTGC 57.474 50.000 6.02 0.00 40.46 4.26
307 308 3.804325 CAGTTATAAGCCATCGTGGTCTG 59.196 47.826 6.02 0.00 40.46 3.51
308 309 3.451178 ACAGTTATAAGCCATCGTGGTCT 59.549 43.478 6.02 1.97 40.46 3.85
309 310 3.793559 ACAGTTATAAGCCATCGTGGTC 58.206 45.455 6.02 0.03 40.46 4.02
310 311 3.906720 ACAGTTATAAGCCATCGTGGT 57.093 42.857 6.02 0.00 40.46 4.16
311 312 5.597806 TCTAACAGTTATAAGCCATCGTGG 58.402 41.667 0.00 0.25 41.55 4.94
312 313 6.701841 ACATCTAACAGTTATAAGCCATCGTG 59.298 38.462 0.00 0.00 0.00 4.35
313 314 6.701841 CACATCTAACAGTTATAAGCCATCGT 59.298 38.462 0.00 0.00 0.00 3.73
314 315 6.701841 ACACATCTAACAGTTATAAGCCATCG 59.298 38.462 0.00 0.00 0.00 3.84
315 316 9.712305 ATACACATCTAACAGTTATAAGCCATC 57.288 33.333 0.00 0.00 0.00 3.51
323 324 9.435570 AAGGGACTATACACATCTAACAGTTAT 57.564 33.333 0.00 0.00 38.49 1.89
324 325 8.834004 AAGGGACTATACACATCTAACAGTTA 57.166 34.615 0.00 0.00 38.49 2.24
325 326 7.735326 AAGGGACTATACACATCTAACAGTT 57.265 36.000 0.00 0.00 38.49 3.16
326 327 7.735326 AAAGGGACTATACACATCTAACAGT 57.265 36.000 0.00 0.00 38.49 3.55
352 353 3.971305 CCTTGTACACTGGGGATATACCA 59.029 47.826 6.25 2.24 41.20 3.25
370 371 1.413118 AAAGTGCAGGAAACCCCTTG 58.587 50.000 0.00 0.00 44.85 3.61
427 428 7.101054 TGTTGGATAACGAGCAACTAGTATTT 58.899 34.615 0.00 0.00 39.71 1.40
442 443 6.000219 AGCATCTGATACCATGTTGGATAAC 59.000 40.000 0.00 0.00 40.96 1.89
512 513 1.203149 AGGTGAGAACGGGGTAGACTT 60.203 52.381 0.00 0.00 0.00 3.01
548 549 3.602513 AACGGCCAGAGAGCAGCTG 62.603 63.158 10.11 10.11 38.87 4.24
560 561 0.670854 GAGAGGACAAGACAACGGCC 60.671 60.000 0.00 0.00 0.00 6.13
572 573 4.176851 GCGACCGGACGAGAGGAC 62.177 72.222 29.83 7.06 35.09 3.85
595 596 2.583441 CGACCAGTGAGGCCAGGAA 61.583 63.158 5.01 0.00 43.14 3.36
658 659 2.760385 AGGACAGACTAGGGGCGC 60.760 66.667 0.00 0.00 0.00 6.53
666 667 2.627737 GGCGACGACAGGACAGACT 61.628 63.158 0.00 0.00 0.00 3.24
795 850 4.832608 GTTAGCTGGACGGGCCGG 62.833 72.222 31.78 13.56 46.56 6.13
807 862 1.495951 CGGAACCAACAGCGTTAGC 59.504 57.895 0.00 0.00 45.58 3.09
810 865 1.890510 GACCGGAACCAACAGCGTT 60.891 57.895 9.46 0.00 0.00 4.84
811 866 2.280592 GACCGGAACCAACAGCGT 60.281 61.111 9.46 0.00 0.00 5.07
812 867 3.411351 CGACCGGAACCAACAGCG 61.411 66.667 9.46 0.00 0.00 5.18
813 868 3.047877 CCGACCGGAACCAACAGC 61.048 66.667 9.46 0.00 37.50 4.40
814 869 2.358247 CCCGACCGGAACCAACAG 60.358 66.667 9.46 0.00 37.50 3.16
815 870 4.629523 GCCCGACCGGAACCAACA 62.630 66.667 9.46 0.00 37.50 3.33
816 871 2.847435 CTAGCCCGACCGGAACCAAC 62.847 65.000 9.46 0.00 37.50 3.77
817 872 2.604079 TAGCCCGACCGGAACCAA 60.604 61.111 9.46 0.00 37.50 3.67
818 873 3.072468 CTAGCCCGACCGGAACCA 61.072 66.667 9.46 0.00 37.50 3.67
819 874 4.525949 GCTAGCCCGACCGGAACC 62.526 72.222 9.46 0.00 37.50 3.62
820 875 4.525949 GGCTAGCCCGACCGGAAC 62.526 72.222 24.19 0.00 37.50 3.62
821 876 4.772231 AGGCTAGCCCGACCGGAA 62.772 66.667 30.42 0.00 39.21 4.30
826 881 3.851128 GGACCAGGCTAGCCCGAC 61.851 72.222 30.42 19.41 39.21 4.79
827 882 4.075793 AGGACCAGGCTAGCCCGA 62.076 66.667 30.42 0.00 39.21 5.14
830 885 2.689034 ACCAGGACCAGGCTAGCC 60.689 66.667 27.19 27.19 0.00 3.93
833 888 4.461119 CTGACCAGGACCAGGCTA 57.539 61.111 2.09 0.00 0.00 3.93
1110 1467 1.678970 GCCAGAAAGAACGCCCCAT 60.679 57.895 0.00 0.00 0.00 4.00
1179 1536 4.279043 GCAAAAACCGGCGGTGCT 62.279 61.111 34.87 20.53 35.34 4.40
1192 1549 1.810755 CTGAGAAGCATCAGCAGCAAA 59.189 47.619 0.00 0.00 45.49 3.68
1290 1647 1.813178 TCTTGGTAGACAGACAGAGCG 59.187 52.381 0.00 0.00 0.00 5.03
1486 1843 1.450848 CATGCTCCTGACGCACCAT 60.451 57.895 0.00 0.00 40.65 3.55
1843 2200 4.115199 GGGCAGGAGCGGTGGATT 62.115 66.667 0.00 0.00 43.41 3.01
1877 2234 0.846015 CATTGCCATCCCTAGACCCA 59.154 55.000 0.00 0.00 0.00 4.51
1956 2319 7.931015 TCCCTATTCATATACCCATGGATAC 57.069 40.000 15.22 0.00 0.00 2.24
2346 2716 0.756442 TCCCATACCCGTTACCCGAG 60.756 60.000 0.00 0.00 39.56 4.63
2419 2791 1.856920 CACCCCATACCCTTACCCATT 59.143 52.381 0.00 0.00 0.00 3.16
2514 2887 1.229428 CACAGAAAGTGTCACGGCAT 58.771 50.000 0.00 0.00 43.40 4.40
2526 2899 2.300152 CCTGGAGCAGTAGTCACAGAAA 59.700 50.000 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.