Multiple sequence alignment - TraesCS3B01G251300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G251300 chr3B 100.000 3371 0 0 448 3818 402452941 402449571 0.000000e+00 6226.0
1 TraesCS3B01G251300 chr3B 100.000 170 0 0 1 170 402453388 402453219 7.960000e-82 315.0
2 TraesCS3B01G251300 chr3D 95.033 2839 92 15 448 3263 316814763 316817575 0.000000e+00 4416.0
3 TraesCS3B01G251300 chr3D 90.691 333 30 1 3486 3818 86917757 86918088 3.500000e-120 442.0
4 TraesCS3B01G251300 chr3D 91.824 159 11 2 3326 3483 316817582 316817739 1.790000e-53 220.0
5 TraesCS3B01G251300 chr3D 98.214 56 1 0 1 56 316814550 316814605 8.730000e-17 99.0
6 TraesCS3B01G251300 chr3A 95.841 2717 71 9 558 3262 411264732 411262046 0.000000e+00 4353.0
7 TraesCS3B01G251300 chr3A 90.533 169 12 4 3316 3483 411262045 411261880 1.790000e-53 220.0
8 TraesCS3B01G251300 chr3A 100.000 29 0 0 26 54 411265015 411264987 2.000000e-03 54.7
9 TraesCS3B01G251300 chr7B 96.866 351 10 1 1582 1931 736624033 736623683 1.530000e-163 586.0
10 TraesCS3B01G251300 chr7B 96.053 76 3 0 1985 2060 736623687 736623612 1.440000e-24 124.0
11 TraesCS3B01G251300 chr4A 89.342 319 34 0 3485 3803 207392527 207392209 5.940000e-108 401.0
12 TraesCS3B01G251300 chr5A 87.463 335 41 1 3483 3816 169823885 169824219 5.980000e-103 385.0
13 TraesCS3B01G251300 chr4D 86.667 345 36 7 3483 3818 98204296 98203953 1.300000e-99 374.0
14 TraesCS3B01G251300 chr1B 88.103 311 36 1 3509 3818 288166777 288167087 6.030000e-98 368.0
15 TraesCS3B01G251300 chr1B 86.567 335 44 1 3485 3818 383834986 383835320 6.030000e-98 368.0
16 TraesCS3B01G251300 chr2D 84.404 327 45 4 3483 3806 202434945 202435268 2.210000e-82 316.0
17 TraesCS3B01G251300 chrUn 85.311 177 25 1 3642 3818 84328197 84328372 8.430000e-42 182.0
18 TraesCS3B01G251300 chr7A 91.667 48 4 0 1580 1627 553996614 553996661 2.460000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G251300 chr3B 402449571 402453388 3817 True 3270.500000 6226 100.000000 1 3818 2 chr3B.!!$R1 3817
1 TraesCS3B01G251300 chr3D 316814550 316817739 3189 False 1578.333333 4416 95.023667 1 3483 3 chr3D.!!$F2 3482
2 TraesCS3B01G251300 chr3A 411261880 411265015 3135 True 1542.566667 4353 95.458000 26 3483 3 chr3A.!!$R1 3457

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
894 908 0.195096 TAAGGGGGAGAGGTTGGTGT 59.805 55.0 0.0 0.0 0.0 4.16 F
2424 2443 0.107643 TCACCGCCAACTCATTCACA 59.892 50.0 0.0 0.0 0.0 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2583 2602 0.606096 TCACGATGAGGGCTTCGAAA 59.394 50.0 0.0 0.0 42.36 3.46 R
3731 3764 0.109919 GGAATGACCGTGTTTTCCGC 60.110 55.0 0.0 0.0 0.00 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 8.488979 AGTAAAATGTTTTCTGAATTCGTTCG 57.511 30.769 0.04 0.00 0.00 3.95
44 45 8.126700 AGTAAAATGTTTTCTGAATTCGTTCGT 58.873 29.630 0.04 0.00 0.00 3.85
45 46 7.749539 AAAATGTTTTCTGAATTCGTTCGTT 57.250 28.000 0.04 0.00 0.00 3.85
46 47 6.969669 AATGTTTTCTGAATTCGTTCGTTC 57.030 33.333 0.04 0.00 0.00 3.95
47 48 4.839796 TGTTTTCTGAATTCGTTCGTTCC 58.160 39.130 0.04 0.00 0.00 3.62
48 49 4.333095 TGTTTTCTGAATTCGTTCGTTCCA 59.667 37.500 0.04 0.00 0.00 3.53
49 50 5.008217 TGTTTTCTGAATTCGTTCGTTCCAT 59.992 36.000 0.04 0.00 0.00 3.41
50 51 6.203145 TGTTTTCTGAATTCGTTCGTTCCATA 59.797 34.615 0.04 0.00 0.00 2.74
51 52 6.978343 TTTCTGAATTCGTTCGTTCCATAT 57.022 33.333 0.04 0.00 0.00 1.78
52 53 8.385111 GTTTTCTGAATTCGTTCGTTCCATATA 58.615 33.333 0.04 0.00 0.00 0.86
53 54 8.657074 TTTCTGAATTCGTTCGTTCCATATAT 57.343 30.769 0.04 0.00 0.00 0.86
54 55 9.752961 TTTCTGAATTCGTTCGTTCCATATATA 57.247 29.630 0.04 0.00 0.00 0.86
55 56 9.752961 TTCTGAATTCGTTCGTTCCATATATAA 57.247 29.630 0.04 0.00 0.00 0.98
56 57 9.752961 TCTGAATTCGTTCGTTCCATATATAAA 57.247 29.630 0.04 0.00 0.00 1.40
106 107 9.855021 ATAATTTGTGCATTTGGACTAAGTTAC 57.145 29.630 4.98 0.00 35.16 2.50
133 134 5.115021 GTCAACAAAAAGCGTTCTTTATCGG 59.885 40.000 0.00 0.00 41.40 4.18
550 554 1.075374 AGCAATCCAACTAACTGCCCA 59.925 47.619 0.00 0.00 33.41 5.36
663 670 2.467946 CTTGCAAGCTTGGGCGTCAG 62.468 60.000 27.10 8.05 44.37 3.51
765 772 4.081697 AGGAAACACAACAAAACCCTTGAG 60.082 41.667 0.00 0.00 0.00 3.02
774 781 1.137697 AAACCCTTGAGAACTCCCGT 58.862 50.000 0.00 0.00 0.00 5.28
775 782 0.396811 AACCCTTGAGAACTCCCGTG 59.603 55.000 0.00 0.00 0.00 4.94
776 783 1.376037 CCCTTGAGAACTCCCGTGC 60.376 63.158 0.00 0.00 0.00 5.34
777 784 1.738099 CCTTGAGAACTCCCGTGCG 60.738 63.158 0.00 0.00 0.00 5.34
778 785 1.738099 CTTGAGAACTCCCGTGCGG 60.738 63.158 3.25 3.25 0.00 5.69
779 786 2.436087 CTTGAGAACTCCCGTGCGGT 62.436 60.000 9.90 0.00 0.00 5.68
780 787 2.432628 GAGAACTCCCGTGCGGTG 60.433 66.667 9.90 4.80 0.00 4.94
781 788 4.681978 AGAACTCCCGTGCGGTGC 62.682 66.667 9.90 0.00 0.00 5.01
812 819 4.409588 CAAACTGACGGCGTCGCG 62.410 66.667 31.90 26.61 40.63 5.87
869 883 2.805671 TCACACAGCAAACATTACGAGG 59.194 45.455 0.00 0.00 0.00 4.63
894 908 0.195096 TAAGGGGGAGAGGTTGGTGT 59.805 55.000 0.00 0.00 0.00 4.16
895 909 0.195096 AAGGGGGAGAGGTTGGTGTA 59.805 55.000 0.00 0.00 0.00 2.90
980 999 2.024871 GCTCGGACGATCTCCACG 59.975 66.667 10.58 0.00 39.39 4.94
1227 1246 4.388499 GTGGTGGCGATCGTGGGT 62.388 66.667 17.81 0.00 0.00 4.51
1890 1909 3.239253 ACCCTCAAGCCGGACGTT 61.239 61.111 5.05 0.00 0.00 3.99
1928 1947 1.401552 CACATACCAAGATGTTGCCGG 59.598 52.381 0.00 0.00 37.99 6.13
2424 2443 0.107643 TCACCGCCAACTCATTCACA 59.892 50.000 0.00 0.00 0.00 3.58
2583 2602 1.729586 TCAGCCTGTTCAAGTACCCT 58.270 50.000 0.00 0.00 0.00 4.34
2589 2608 3.735591 CCTGTTCAAGTACCCTTTCGAA 58.264 45.455 0.00 0.00 0.00 3.71
2871 2890 1.720694 GCCATTGCCATTGCCATTGC 61.721 55.000 0.00 0.00 36.33 3.56
2873 2892 0.393132 CATTGCCATTGCCATTGCCA 60.393 50.000 0.00 0.00 36.33 4.92
2874 2893 0.548989 ATTGCCATTGCCATTGCCAT 59.451 45.000 0.00 0.00 36.33 4.40
2875 2894 0.328592 TTGCCATTGCCATTGCCATT 59.671 45.000 0.00 0.00 36.33 3.16
2876 2895 0.393132 TGCCATTGCCATTGCCATTG 60.393 50.000 0.00 0.00 36.33 2.82
2877 2896 1.720694 GCCATTGCCATTGCCATTGC 61.721 55.000 0.00 0.00 36.33 3.56
2878 2897 1.098712 CCATTGCCATTGCCATTGCC 61.099 55.000 0.00 0.00 36.33 4.52
2879 2898 0.393132 CATTGCCATTGCCATTGCCA 60.393 50.000 0.00 0.00 36.33 4.92
2927 2946 9.613957 CATCATCTGAATTTGATATCTTTCAGC 57.386 33.333 24.04 6.82 42.95 4.26
2977 2996 8.621532 TGAAGATATTTTAATCTTGGATCCGG 57.378 34.615 7.39 0.00 44.38 5.14
2984 3003 1.507140 ATCTTGGATCCGGTTAGGCA 58.493 50.000 7.39 0.00 40.77 4.75
2985 3004 0.539986 TCTTGGATCCGGTTAGGCAC 59.460 55.000 7.39 0.00 40.77 5.01
3071 3092 6.204688 TGGATGTTGTTCTTCTGTATCAACAC 59.795 38.462 10.41 6.02 46.56 3.32
3087 3108 6.783892 ATCAACACCAACAATGCAATTTAC 57.216 33.333 0.00 0.00 31.22 2.01
3203 3234 5.585820 ATCGTTACTTTTTGGGTGTGTTT 57.414 34.783 0.00 0.00 0.00 2.83
3265 3297 6.969473 GGATTTTGCAATTTGTCTAGTCTAGC 59.031 38.462 0.00 0.00 0.00 3.42
3275 3307 1.417145 TCTAGTCTAGCCTCTCCCGTC 59.583 57.143 1.60 0.00 0.00 4.79
3276 3308 0.106335 TAGTCTAGCCTCTCCCGTCG 59.894 60.000 0.00 0.00 0.00 5.12
3277 3309 1.153208 GTCTAGCCTCTCCCGTCGA 60.153 63.158 0.00 0.00 0.00 4.20
3278 3310 0.747283 GTCTAGCCTCTCCCGTCGAA 60.747 60.000 0.00 0.00 0.00 3.71
3280 3312 1.448922 CTAGCCTCTCCCGTCGAAGG 61.449 65.000 10.80 10.80 0.00 3.46
3281 3313 4.516195 GCCTCTCCCGTCGAAGGC 62.516 72.222 12.40 9.92 35.20 4.35
3282 3314 3.839432 CCTCTCCCGTCGAAGGCC 61.839 72.222 12.40 0.00 0.00 5.19
3283 3315 2.756283 CTCTCCCGTCGAAGGCCT 60.756 66.667 12.40 0.00 0.00 5.19
3284 3316 2.283676 TCTCCCGTCGAAGGCCTT 60.284 61.111 20.65 20.65 0.00 4.35
3285 3317 1.889530 CTCTCCCGTCGAAGGCCTTT 61.890 60.000 21.54 2.85 0.00 3.11
3286 3318 1.003718 CTCCCGTCGAAGGCCTTTT 60.004 57.895 21.54 0.00 0.00 2.27
3287 3319 1.298859 CTCCCGTCGAAGGCCTTTTG 61.299 60.000 21.54 15.68 0.00 2.44
3288 3320 1.599797 CCCGTCGAAGGCCTTTTGT 60.600 57.895 21.54 0.00 0.00 2.83
3289 3321 1.170290 CCCGTCGAAGGCCTTTTGTT 61.170 55.000 21.54 0.00 0.00 2.83
3290 3322 0.666374 CCGTCGAAGGCCTTTTGTTT 59.334 50.000 21.54 0.00 0.00 2.83
3291 3323 1.599419 CCGTCGAAGGCCTTTTGTTTG 60.599 52.381 21.54 7.86 0.00 2.93
3292 3324 1.064952 CGTCGAAGGCCTTTTGTTTGT 59.935 47.619 21.54 0.00 0.00 2.83
3293 3325 2.478879 CGTCGAAGGCCTTTTGTTTGTT 60.479 45.455 21.54 0.00 0.00 2.83
3294 3326 3.517602 GTCGAAGGCCTTTTGTTTGTTT 58.482 40.909 21.54 0.00 0.00 2.83
3295 3327 3.930229 GTCGAAGGCCTTTTGTTTGTTTT 59.070 39.130 21.54 0.00 0.00 2.43
3296 3328 4.390603 GTCGAAGGCCTTTTGTTTGTTTTT 59.609 37.500 21.54 0.00 0.00 1.94
3320 3352 8.831715 TTTTCTTTAATTGATGAAAGGAAGGC 57.168 30.769 10.03 0.00 32.91 4.35
3321 3353 6.530019 TCTTTAATTGATGAAAGGAAGGCC 57.470 37.500 0.00 0.00 34.14 5.19
3333 3365 1.138859 AGGAAGGCCTTTTGTTTGTGC 59.861 47.619 21.54 2.67 43.90 4.57
3334 3366 1.208259 GAAGGCCTTTTGTTTGTGCG 58.792 50.000 21.54 0.00 0.00 5.34
3335 3367 0.809636 AAGGCCTTTTGTTTGTGCGC 60.810 50.000 13.78 0.00 0.00 6.09
3350 3382 3.717294 CGCCAAGGGGTAGCTGGT 61.717 66.667 0.00 0.00 36.17 4.00
3375 3407 1.517242 CAAGACCAAGTGAGCAGTCC 58.483 55.000 0.00 0.00 0.00 3.85
3443 3475 5.282055 TGCCTAATCTGTATCTGTCTTGG 57.718 43.478 0.00 0.00 0.00 3.61
3458 3491 3.192422 TGTCTTGGTGAAAAACTGGTGTG 59.808 43.478 0.00 0.00 0.00 3.82
3478 3511 4.042809 TGTGTCCAAGATCCAGGTGTTAAT 59.957 41.667 1.37 0.00 0.00 1.40
3483 3516 5.014123 TCCAAGATCCAGGTGTTAATTGACT 59.986 40.000 1.75 0.00 0.00 3.41
3484 3517 5.711976 CCAAGATCCAGGTGTTAATTGACTT 59.288 40.000 1.75 0.00 0.00 3.01
3485 3518 6.209391 CCAAGATCCAGGTGTTAATTGACTTT 59.791 38.462 1.75 0.00 0.00 2.66
3486 3519 7.255942 CCAAGATCCAGGTGTTAATTGACTTTT 60.256 37.037 1.75 0.00 0.00 2.27
3487 3520 7.839680 AGATCCAGGTGTTAATTGACTTTTT 57.160 32.000 1.75 0.00 0.00 1.94
3512 3545 9.532697 TTTTTCGAGAATACGCAAATTAAGTAC 57.467 29.630 0.00 0.00 30.28 2.73
3513 3546 6.817270 TCGAGAATACGCAAATTAAGTACC 57.183 37.500 0.00 0.00 0.00 3.34
3514 3547 6.567050 TCGAGAATACGCAAATTAAGTACCT 58.433 36.000 0.00 0.00 0.00 3.08
3515 3548 7.037438 TCGAGAATACGCAAATTAAGTACCTT 58.963 34.615 0.00 0.00 0.00 3.50
3516 3549 8.190122 TCGAGAATACGCAAATTAAGTACCTTA 58.810 33.333 0.00 0.00 0.00 2.69
3517 3550 8.477709 CGAGAATACGCAAATTAAGTACCTTAG 58.522 37.037 0.00 0.00 0.00 2.18
3518 3551 8.139521 AGAATACGCAAATTAAGTACCTTAGC 57.860 34.615 0.00 0.00 0.00 3.09
3519 3552 7.985752 AGAATACGCAAATTAAGTACCTTAGCT 59.014 33.333 0.00 0.00 0.00 3.32
3520 3553 8.502105 AATACGCAAATTAAGTACCTTAGCTT 57.498 30.769 0.00 0.00 0.00 3.74
3521 3554 6.812879 ACGCAAATTAAGTACCTTAGCTTT 57.187 33.333 0.00 0.00 0.00 3.51
3522 3555 7.910441 ACGCAAATTAAGTACCTTAGCTTTA 57.090 32.000 0.00 0.00 0.00 1.85
3523 3556 7.745972 ACGCAAATTAAGTACCTTAGCTTTAC 58.254 34.615 0.00 0.00 0.00 2.01
3524 3557 7.388500 ACGCAAATTAAGTACCTTAGCTTTACA 59.612 33.333 0.00 0.00 0.00 2.41
3525 3558 7.903431 CGCAAATTAAGTACCTTAGCTTTACAG 59.097 37.037 0.00 0.00 0.00 2.74
3526 3559 8.943002 GCAAATTAAGTACCTTAGCTTTACAGA 58.057 33.333 0.00 0.00 0.00 3.41
3531 3564 7.778185 AAGTACCTTAGCTTTACAGAAGAGA 57.222 36.000 0.00 0.00 0.00 3.10
3532 3565 7.399245 AGTACCTTAGCTTTACAGAAGAGAG 57.601 40.000 0.00 0.00 0.00 3.20
3533 3566 7.176490 AGTACCTTAGCTTTACAGAAGAGAGA 58.824 38.462 0.00 0.00 0.00 3.10
3534 3567 6.919775 ACCTTAGCTTTACAGAAGAGAGAA 57.080 37.500 0.00 0.00 0.00 2.87
3535 3568 7.304497 ACCTTAGCTTTACAGAAGAGAGAAA 57.696 36.000 0.00 0.00 0.00 2.52
3536 3569 7.736893 ACCTTAGCTTTACAGAAGAGAGAAAA 58.263 34.615 0.00 0.00 0.00 2.29
3537 3570 7.658167 ACCTTAGCTTTACAGAAGAGAGAAAAC 59.342 37.037 0.00 0.00 0.00 2.43
3538 3571 7.657761 CCTTAGCTTTACAGAAGAGAGAAAACA 59.342 37.037 0.00 0.00 0.00 2.83
3539 3572 8.958119 TTAGCTTTACAGAAGAGAGAAAACAA 57.042 30.769 0.00 0.00 0.00 2.83
3540 3573 7.252965 AGCTTTACAGAAGAGAGAAAACAAC 57.747 36.000 0.00 0.00 0.00 3.32
3541 3574 6.018669 AGCTTTACAGAAGAGAGAAAACAACG 60.019 38.462 0.00 0.00 0.00 4.10
3542 3575 6.238130 GCTTTACAGAAGAGAGAAAACAACGT 60.238 38.462 0.00 0.00 0.00 3.99
3543 3576 7.042925 GCTTTACAGAAGAGAGAAAACAACGTA 60.043 37.037 0.00 0.00 0.00 3.57
3544 3577 7.689953 TTACAGAAGAGAGAAAACAACGTAC 57.310 36.000 0.00 0.00 0.00 3.67
3545 3578 5.657474 ACAGAAGAGAGAAAACAACGTACA 58.343 37.500 0.00 0.00 0.00 2.90
3546 3579 6.103997 ACAGAAGAGAGAAAACAACGTACAA 58.896 36.000 0.00 0.00 0.00 2.41
3547 3580 6.255887 ACAGAAGAGAGAAAACAACGTACAAG 59.744 38.462 0.00 0.00 0.00 3.16
3548 3581 6.475727 CAGAAGAGAGAAAACAACGTACAAGA 59.524 38.462 0.00 0.00 0.00 3.02
3549 3582 6.476053 AGAAGAGAGAAAACAACGTACAAGAC 59.524 38.462 0.00 0.00 0.00 3.01
3550 3583 5.903810 AGAGAGAAAACAACGTACAAGACT 58.096 37.500 0.00 0.00 0.00 3.24
3551 3584 5.749109 AGAGAGAAAACAACGTACAAGACTG 59.251 40.000 0.00 0.00 0.00 3.51
3552 3585 5.416947 AGAGAAAACAACGTACAAGACTGT 58.583 37.500 0.00 0.00 39.75 3.55
3553 3586 5.873164 AGAGAAAACAACGTACAAGACTGTT 59.127 36.000 0.00 0.00 36.96 3.16
3554 3587 7.037438 AGAGAAAACAACGTACAAGACTGTTA 58.963 34.615 0.35 0.00 36.96 2.41
3555 3588 6.997222 AGAAAACAACGTACAAGACTGTTAC 58.003 36.000 0.35 0.00 36.96 2.50
3556 3589 6.591062 AGAAAACAACGTACAAGACTGTTACA 59.409 34.615 0.35 0.00 36.96 2.41
3557 3590 6.913873 AAACAACGTACAAGACTGTTACAT 57.086 33.333 0.35 0.00 36.96 2.29
3558 3591 5.900339 ACAACGTACAAGACTGTTACATG 57.100 39.130 0.00 0.00 36.96 3.21
3559 3592 4.210537 ACAACGTACAAGACTGTTACATGC 59.789 41.667 0.00 0.00 36.96 4.06
3560 3593 3.985008 ACGTACAAGACTGTTACATGCA 58.015 40.909 0.00 0.00 36.96 3.96
3561 3594 3.739300 ACGTACAAGACTGTTACATGCAC 59.261 43.478 0.00 0.00 36.96 4.57
3562 3595 3.738791 CGTACAAGACTGTTACATGCACA 59.261 43.478 0.00 0.00 36.96 4.57
3563 3596 4.210328 CGTACAAGACTGTTACATGCACAA 59.790 41.667 0.00 0.00 36.96 3.33
3564 3597 4.552166 ACAAGACTGTTACATGCACAAC 57.448 40.909 0.00 0.00 28.57 3.32
3565 3598 3.315191 ACAAGACTGTTACATGCACAACC 59.685 43.478 0.00 0.00 28.57 3.77
3566 3599 3.207265 AGACTGTTACATGCACAACCA 57.793 42.857 0.00 0.00 0.00 3.67
3567 3600 3.550820 AGACTGTTACATGCACAACCAA 58.449 40.909 0.00 0.00 0.00 3.67
3568 3601 3.315191 AGACTGTTACATGCACAACCAAC 59.685 43.478 0.00 0.00 0.00 3.77
3569 3602 3.020274 ACTGTTACATGCACAACCAACA 58.980 40.909 0.00 0.00 0.00 3.33
3570 3603 3.066621 ACTGTTACATGCACAACCAACAG 59.933 43.478 19.07 19.07 45.20 3.16
3571 3604 3.020274 TGTTACATGCACAACCAACAGT 58.980 40.909 0.00 0.00 0.00 3.55
3572 3605 3.066064 TGTTACATGCACAACCAACAGTC 59.934 43.478 0.00 0.00 0.00 3.51
3573 3606 1.761449 ACATGCACAACCAACAGTCA 58.239 45.000 0.00 0.00 0.00 3.41
3574 3607 1.405105 ACATGCACAACCAACAGTCAC 59.595 47.619 0.00 0.00 0.00 3.67
3575 3608 0.662619 ATGCACAACCAACAGTCACG 59.337 50.000 0.00 0.00 0.00 4.35
3576 3609 1.298339 GCACAACCAACAGTCACGC 60.298 57.895 0.00 0.00 0.00 5.34
3577 3610 1.011242 CACAACCAACAGTCACGCG 60.011 57.895 3.53 3.53 0.00 6.01
3578 3611 2.052237 CAACCAACAGTCACGCGC 60.052 61.111 5.73 0.00 0.00 6.86
3579 3612 3.276846 AACCAACAGTCACGCGCC 61.277 61.111 5.73 0.00 0.00 6.53
3582 3615 4.059459 CAACAGTCACGCGCCGAC 62.059 66.667 18.68 18.68 0.00 4.79
3605 3638 2.928416 GCCACGCCAAACTCTAACT 58.072 52.632 0.00 0.00 0.00 2.24
3606 3639 0.796927 GCCACGCCAAACTCTAACTC 59.203 55.000 0.00 0.00 0.00 3.01
3607 3640 1.439679 CCACGCCAAACTCTAACTCC 58.560 55.000 0.00 0.00 0.00 3.85
3608 3641 1.270625 CCACGCCAAACTCTAACTCCA 60.271 52.381 0.00 0.00 0.00 3.86
3609 3642 2.615493 CCACGCCAAACTCTAACTCCAT 60.615 50.000 0.00 0.00 0.00 3.41
3610 3643 2.416547 CACGCCAAACTCTAACTCCATG 59.583 50.000 0.00 0.00 0.00 3.66
3611 3644 1.398390 CGCCAAACTCTAACTCCATGC 59.602 52.381 0.00 0.00 0.00 4.06
3612 3645 2.436417 GCCAAACTCTAACTCCATGCA 58.564 47.619 0.00 0.00 0.00 3.96
3613 3646 2.162408 GCCAAACTCTAACTCCATGCAC 59.838 50.000 0.00 0.00 0.00 4.57
3614 3647 3.679389 CCAAACTCTAACTCCATGCACT 58.321 45.455 0.00 0.00 0.00 4.40
3615 3648 4.832248 CCAAACTCTAACTCCATGCACTA 58.168 43.478 0.00 0.00 0.00 2.74
3616 3649 4.631813 CCAAACTCTAACTCCATGCACTAC 59.368 45.833 0.00 0.00 0.00 2.73
3617 3650 3.784701 ACTCTAACTCCATGCACTACG 57.215 47.619 0.00 0.00 0.00 3.51
3618 3651 3.090037 ACTCTAACTCCATGCACTACGT 58.910 45.455 0.00 0.00 0.00 3.57
3619 3652 4.267536 ACTCTAACTCCATGCACTACGTA 58.732 43.478 0.00 0.00 0.00 3.57
3620 3653 4.703575 ACTCTAACTCCATGCACTACGTAA 59.296 41.667 0.00 0.00 0.00 3.18
3621 3654 5.184479 ACTCTAACTCCATGCACTACGTAAA 59.816 40.000 0.00 0.00 0.00 2.01
3622 3655 5.404946 TCTAACTCCATGCACTACGTAAAC 58.595 41.667 0.00 0.00 0.00 2.01
3623 3656 3.955650 ACTCCATGCACTACGTAAACT 57.044 42.857 0.00 0.00 0.00 2.66
3624 3657 3.846360 ACTCCATGCACTACGTAAACTC 58.154 45.455 0.00 0.00 0.00 3.01
3625 3658 3.187700 CTCCATGCACTACGTAAACTCC 58.812 50.000 0.00 0.00 0.00 3.85
3626 3659 2.829720 TCCATGCACTACGTAAACTCCT 59.170 45.455 0.00 0.00 0.00 3.69
3627 3660 3.119245 TCCATGCACTACGTAAACTCCTC 60.119 47.826 0.00 0.00 0.00 3.71
3628 3661 3.368013 CCATGCACTACGTAAACTCCTCA 60.368 47.826 0.00 0.00 0.00 3.86
3629 3662 3.293311 TGCACTACGTAAACTCCTCAC 57.707 47.619 0.00 0.00 0.00 3.51
3630 3663 2.624364 TGCACTACGTAAACTCCTCACA 59.376 45.455 0.00 0.00 0.00 3.58
3631 3664 3.068448 TGCACTACGTAAACTCCTCACAA 59.932 43.478 0.00 0.00 0.00 3.33
3632 3665 4.053295 GCACTACGTAAACTCCTCACAAA 58.947 43.478 0.00 0.00 0.00 2.83
3633 3666 4.508861 GCACTACGTAAACTCCTCACAAAA 59.491 41.667 0.00 0.00 0.00 2.44
3634 3667 5.178809 GCACTACGTAAACTCCTCACAAAAT 59.821 40.000 0.00 0.00 0.00 1.82
3635 3668 6.590357 CACTACGTAAACTCCTCACAAAATG 58.410 40.000 0.00 0.00 0.00 2.32
3636 3669 5.699458 ACTACGTAAACTCCTCACAAAATGG 59.301 40.000 0.00 0.00 0.00 3.16
3637 3670 4.457466 ACGTAAACTCCTCACAAAATGGT 58.543 39.130 0.00 0.00 0.00 3.55
3638 3671 4.885325 ACGTAAACTCCTCACAAAATGGTT 59.115 37.500 0.00 0.00 0.00 3.67
3639 3672 5.358725 ACGTAAACTCCTCACAAAATGGTTT 59.641 36.000 0.00 0.00 0.00 3.27
3640 3673 5.912955 CGTAAACTCCTCACAAAATGGTTTC 59.087 40.000 0.00 0.00 0.00 2.78
3641 3674 5.930837 AAACTCCTCACAAAATGGTTTCA 57.069 34.783 0.00 0.00 0.00 2.69
3642 3675 5.930837 AACTCCTCACAAAATGGTTTCAA 57.069 34.783 0.00 0.00 0.00 2.69
3643 3676 5.262588 ACTCCTCACAAAATGGTTTCAAC 57.737 39.130 0.00 0.00 0.00 3.18
3644 3677 4.956075 ACTCCTCACAAAATGGTTTCAACT 59.044 37.500 0.00 0.00 0.00 3.16
3645 3678 5.067805 ACTCCTCACAAAATGGTTTCAACTC 59.932 40.000 0.00 0.00 0.00 3.01
3646 3679 4.340950 TCCTCACAAAATGGTTTCAACTCC 59.659 41.667 0.00 0.00 0.00 3.85
3647 3680 4.099266 CCTCACAAAATGGTTTCAACTCCA 59.901 41.667 0.00 0.00 38.14 3.86
3648 3681 5.004922 TCACAAAATGGTTTCAACTCCAC 57.995 39.130 0.00 0.00 36.50 4.02
3649 3682 3.796178 CACAAAATGGTTTCAACTCCACG 59.204 43.478 0.00 0.00 36.50 4.94
3650 3683 2.793278 AAATGGTTTCAACTCCACGC 57.207 45.000 0.00 0.00 36.50 5.34
3651 3684 0.958822 AATGGTTTCAACTCCACGCC 59.041 50.000 0.00 0.00 36.50 5.68
3652 3685 0.893727 ATGGTTTCAACTCCACGCCC 60.894 55.000 0.00 0.00 36.50 6.13
3653 3686 1.228154 GGTTTCAACTCCACGCCCT 60.228 57.895 0.00 0.00 0.00 5.19
3654 3687 1.235281 GGTTTCAACTCCACGCCCTC 61.235 60.000 0.00 0.00 0.00 4.30
3655 3688 1.072505 TTTCAACTCCACGCCCTCC 59.927 57.895 0.00 0.00 0.00 4.30
3656 3689 2.406002 TTTCAACTCCACGCCCTCCC 62.406 60.000 0.00 0.00 0.00 4.30
3657 3690 4.760047 CAACTCCACGCCCTCCCG 62.760 72.222 0.00 0.00 0.00 5.14
3661 3694 4.853142 TCCACGCCCTCCCGCTAT 62.853 66.667 0.00 0.00 0.00 2.97
3662 3695 4.301027 CCACGCCCTCCCGCTATC 62.301 72.222 0.00 0.00 0.00 2.08
3663 3696 4.647615 CACGCCCTCCCGCTATCG 62.648 72.222 0.00 0.00 0.00 2.92
3668 3701 4.301027 CCTCCCGCTATCGCCCAC 62.301 72.222 0.00 0.00 0.00 4.61
3669 3702 3.536917 CTCCCGCTATCGCCCACA 61.537 66.667 0.00 0.00 0.00 4.17
3670 3703 2.842462 TCCCGCTATCGCCCACAT 60.842 61.111 0.00 0.00 0.00 3.21
3671 3704 2.666190 CCCGCTATCGCCCACATG 60.666 66.667 0.00 0.00 0.00 3.21
3672 3705 3.349006 CCGCTATCGCCCACATGC 61.349 66.667 0.00 0.00 0.00 4.06
3697 3730 7.948137 CGCAGCTCATCTAGAATCTTATTTAC 58.052 38.462 0.00 0.00 0.00 2.01
3698 3731 7.596621 CGCAGCTCATCTAGAATCTTATTTACA 59.403 37.037 0.00 0.00 0.00 2.41
3699 3732 9.265901 GCAGCTCATCTAGAATCTTATTTACAA 57.734 33.333 0.00 0.00 0.00 2.41
3720 3753 3.404978 TCGGTAATCGACGTTGGTG 57.595 52.632 2.20 0.00 43.74 4.17
3721 3754 0.597568 TCGGTAATCGACGTTGGTGT 59.402 50.000 2.20 0.00 43.74 4.16
3722 3755 0.711670 CGGTAATCGACGTTGGTGTG 59.288 55.000 2.20 0.00 42.43 3.82
3723 3756 1.073177 GGTAATCGACGTTGGTGTGG 58.927 55.000 2.20 0.00 0.00 4.17
3724 3757 0.441145 GTAATCGACGTTGGTGTGGC 59.559 55.000 2.20 0.00 0.00 5.01
3725 3758 0.671163 TAATCGACGTTGGTGTGGCC 60.671 55.000 2.20 0.00 37.90 5.36
3733 3766 4.758251 TGGTGTGGCCATCGAGCG 62.758 66.667 9.72 0.00 43.61 5.03
3735 3768 4.451150 GTGTGGCCATCGAGCGGA 62.451 66.667 9.72 0.00 0.00 5.54
3736 3769 3.700970 TGTGGCCATCGAGCGGAA 61.701 61.111 9.72 0.00 0.00 4.30
3737 3770 2.435938 GTGGCCATCGAGCGGAAA 60.436 61.111 9.72 0.00 0.00 3.13
3738 3771 2.038269 GTGGCCATCGAGCGGAAAA 61.038 57.895 9.72 0.00 0.00 2.29
3739 3772 2.038269 TGGCCATCGAGCGGAAAAC 61.038 57.895 0.00 0.00 0.00 2.43
3740 3773 2.038269 GGCCATCGAGCGGAAAACA 61.038 57.895 7.83 0.00 0.00 2.83
3741 3774 1.134694 GCCATCGAGCGGAAAACAC 59.865 57.895 7.83 0.00 0.00 3.32
3742 3775 1.419922 CCATCGAGCGGAAAACACG 59.580 57.895 0.00 0.00 0.00 4.49
3743 3776 1.419922 CATCGAGCGGAAAACACGG 59.580 57.895 0.00 0.00 0.00 4.94
3744 3777 1.005394 ATCGAGCGGAAAACACGGT 60.005 52.632 0.00 0.00 45.51 4.83
3747 3780 4.792087 AGCGGAAAACACGGTCAT 57.208 50.000 0.00 0.00 37.53 3.06
3748 3781 3.015516 AGCGGAAAACACGGTCATT 57.984 47.368 0.00 0.00 37.53 2.57
3749 3782 0.872388 AGCGGAAAACACGGTCATTC 59.128 50.000 0.00 0.00 37.53 2.67
3750 3783 0.109919 GCGGAAAACACGGTCATTCC 60.110 55.000 6.19 6.19 38.35 3.01
3751 3784 1.519408 CGGAAAACACGGTCATTCCT 58.481 50.000 11.92 0.00 39.33 3.36
3752 3785 1.877443 CGGAAAACACGGTCATTCCTT 59.123 47.619 11.92 0.00 39.33 3.36
3753 3786 2.292292 CGGAAAACACGGTCATTCCTTT 59.708 45.455 11.92 0.00 39.33 3.11
3754 3787 3.638484 GGAAAACACGGTCATTCCTTTG 58.362 45.455 8.22 0.00 38.61 2.77
3755 3788 2.793278 AAACACGGTCATTCCTTTGC 57.207 45.000 0.00 0.00 0.00 3.68
3756 3789 1.981256 AACACGGTCATTCCTTTGCT 58.019 45.000 0.00 0.00 0.00 3.91
3757 3790 1.981256 ACACGGTCATTCCTTTGCTT 58.019 45.000 0.00 0.00 0.00 3.91
3758 3791 1.880027 ACACGGTCATTCCTTTGCTTC 59.120 47.619 0.00 0.00 0.00 3.86
3759 3792 1.200020 CACGGTCATTCCTTTGCTTCC 59.800 52.381 0.00 0.00 0.00 3.46
3760 3793 1.202879 ACGGTCATTCCTTTGCTTCCA 60.203 47.619 0.00 0.00 0.00 3.53
3761 3794 2.094675 CGGTCATTCCTTTGCTTCCAT 58.905 47.619 0.00 0.00 0.00 3.41
3762 3795 3.278574 CGGTCATTCCTTTGCTTCCATA 58.721 45.455 0.00 0.00 0.00 2.74
3763 3796 3.694072 CGGTCATTCCTTTGCTTCCATAA 59.306 43.478 0.00 0.00 0.00 1.90
3764 3797 4.201950 CGGTCATTCCTTTGCTTCCATAAG 60.202 45.833 0.00 0.00 35.68 1.73
3765 3798 4.706962 GGTCATTCCTTTGCTTCCATAAGT 59.293 41.667 0.00 0.00 34.99 2.24
3766 3799 5.393461 GGTCATTCCTTTGCTTCCATAAGTG 60.393 44.000 0.00 0.00 34.99 3.16
3767 3800 4.158394 TCATTCCTTTGCTTCCATAAGTGC 59.842 41.667 0.00 0.00 34.99 4.40
3768 3801 2.446435 TCCTTTGCTTCCATAAGTGCC 58.554 47.619 0.00 0.00 34.99 5.01
3769 3802 2.170166 CCTTTGCTTCCATAAGTGCCA 58.830 47.619 0.00 0.00 34.99 4.92
3770 3803 2.562298 CCTTTGCTTCCATAAGTGCCAA 59.438 45.455 0.00 0.00 34.99 4.52
3771 3804 3.578688 CTTTGCTTCCATAAGTGCCAAC 58.421 45.455 0.00 0.00 34.99 3.77
3772 3805 2.284754 TGCTTCCATAAGTGCCAACA 57.715 45.000 0.00 0.00 34.99 3.33
3783 3816 1.522668 GTGCCAACACACTAGCATCA 58.477 50.000 0.00 0.00 46.61 3.07
3784 3817 1.197721 GTGCCAACACACTAGCATCAC 59.802 52.381 0.00 0.00 46.61 3.06
3785 3818 0.804989 GCCAACACACTAGCATCACC 59.195 55.000 0.00 0.00 0.00 4.02
3786 3819 1.881925 GCCAACACACTAGCATCACCA 60.882 52.381 0.00 0.00 0.00 4.17
3787 3820 2.503331 CCAACACACTAGCATCACCAA 58.497 47.619 0.00 0.00 0.00 3.67
3788 3821 2.884012 CCAACACACTAGCATCACCAAA 59.116 45.455 0.00 0.00 0.00 3.28
3789 3822 3.304659 CCAACACACTAGCATCACCAAAC 60.305 47.826 0.00 0.00 0.00 2.93
3790 3823 3.492102 ACACACTAGCATCACCAAACT 57.508 42.857 0.00 0.00 0.00 2.66
3791 3824 4.617253 ACACACTAGCATCACCAAACTA 57.383 40.909 0.00 0.00 0.00 2.24
3792 3825 5.165961 ACACACTAGCATCACCAAACTAT 57.834 39.130 0.00 0.00 0.00 2.12
3793 3826 5.178797 ACACACTAGCATCACCAAACTATC 58.821 41.667 0.00 0.00 0.00 2.08
3794 3827 5.178061 CACACTAGCATCACCAAACTATCA 58.822 41.667 0.00 0.00 0.00 2.15
3795 3828 5.643348 CACACTAGCATCACCAAACTATCAA 59.357 40.000 0.00 0.00 0.00 2.57
3796 3829 6.149308 CACACTAGCATCACCAAACTATCAAA 59.851 38.462 0.00 0.00 0.00 2.69
3797 3830 6.714810 ACACTAGCATCACCAAACTATCAAAA 59.285 34.615 0.00 0.00 0.00 2.44
3798 3831 7.094634 ACACTAGCATCACCAAACTATCAAAAG 60.095 37.037 0.00 0.00 0.00 2.27
3799 3832 5.064441 AGCATCACCAAACTATCAAAAGC 57.936 39.130 0.00 0.00 0.00 3.51
3800 3833 4.768968 AGCATCACCAAACTATCAAAAGCT 59.231 37.500 0.00 0.00 0.00 3.74
3801 3834 5.244626 AGCATCACCAAACTATCAAAAGCTT 59.755 36.000 0.00 0.00 0.00 3.74
3802 3835 5.928264 GCATCACCAAACTATCAAAAGCTTT 59.072 36.000 5.69 5.69 0.00 3.51
3803 3836 6.128742 GCATCACCAAACTATCAAAAGCTTTG 60.129 38.462 13.54 7.34 0.00 2.77
3804 3837 5.288804 TCACCAAACTATCAAAAGCTTTGC 58.711 37.500 13.54 0.00 0.00 3.68
3805 3838 4.148696 CACCAAACTATCAAAAGCTTTGCG 59.851 41.667 13.54 7.50 0.00 4.85
3806 3839 3.674753 CCAAACTATCAAAAGCTTTGCGG 59.325 43.478 13.54 5.96 0.00 5.69
3807 3840 4.298332 CAAACTATCAAAAGCTTTGCGGT 58.702 39.130 13.54 6.17 0.00 5.68
3808 3841 4.584327 AACTATCAAAAGCTTTGCGGTT 57.416 36.364 13.54 10.67 34.13 4.44
3809 3842 4.160736 ACTATCAAAAGCTTTGCGGTTC 57.839 40.909 13.54 0.00 31.82 3.62
3810 3843 3.821033 ACTATCAAAAGCTTTGCGGTTCT 59.179 39.130 13.54 0.00 31.82 3.01
3811 3844 2.774439 TCAAAAGCTTTGCGGTTCTC 57.226 45.000 13.54 0.00 31.82 2.87
3812 3845 1.336755 TCAAAAGCTTTGCGGTTCTCC 59.663 47.619 13.54 0.00 31.82 3.71
3813 3846 1.338020 CAAAAGCTTTGCGGTTCTCCT 59.662 47.619 13.54 0.00 31.82 3.69
3814 3847 1.692411 AAAGCTTTGCGGTTCTCCTT 58.308 45.000 11.80 0.00 31.82 3.36
3815 3848 0.954452 AAGCTTTGCGGTTCTCCTTG 59.046 50.000 0.00 0.00 0.00 3.61
3816 3849 0.179018 AGCTTTGCGGTTCTCCTTGT 60.179 50.000 0.00 0.00 0.00 3.16
3817 3850 0.238553 GCTTTGCGGTTCTCCTTGTC 59.761 55.000 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 9.776158 ACAAATTATATATGAAACGTTTCGCAA 57.224 25.926 30.05 20.25 40.01 4.85
63 64 9.216087 CACAAATTATATATGAAACGTTTCGCA 57.784 29.630 30.05 22.14 40.01 5.10
64 65 8.198816 GCACAAATTATATATGAAACGTTTCGC 58.801 33.333 30.05 19.73 40.01 4.70
65 66 9.216087 TGCACAAATTATATATGAAACGTTTCG 57.784 29.630 30.05 16.50 40.01 3.46
106 107 3.319238 AGAACGCTTTTTGTTGACTCG 57.681 42.857 0.00 0.00 0.00 4.18
141 142 0.610174 TTGCGATGCTCCTGAACTCT 59.390 50.000 0.00 0.00 0.00 3.24
142 143 1.005340 CTTGCGATGCTCCTGAACTC 58.995 55.000 0.00 0.00 0.00 3.01
461 462 5.585445 ACAGAGTATAGACACGGTAAGAGTG 59.415 44.000 0.00 0.00 44.57 3.51
517 521 9.914834 TTAGTTGGATTGCTATACCAAGTTTAT 57.085 29.630 17.61 6.03 42.40 1.40
524 528 5.123227 GCAGTTAGTTGGATTGCTATACCA 58.877 41.667 0.00 0.00 0.00 3.25
528 532 3.053693 TGGGCAGTTAGTTGGATTGCTAT 60.054 43.478 0.00 0.00 35.23 2.97
550 554 6.510157 ATCGTTTAGATGTCGTATCGTACGTT 60.510 38.462 16.05 9.80 44.35 3.99
580 587 0.605589 CTCTGTTTCTCGCTCCCTGT 59.394 55.000 0.00 0.00 0.00 4.00
584 591 2.088423 TCTCTCTCTGTTTCTCGCTCC 58.912 52.381 0.00 0.00 0.00 4.70
714 721 0.453615 CTCGTCTCGTCTGTCTGTGC 60.454 60.000 0.00 0.00 0.00 4.57
718 725 3.029564 GCGCTCGTCTCGTCTGTCT 62.030 63.158 0.00 0.00 0.00 3.41
721 728 2.872001 GTGCGCTCGTCTCGTCTG 60.872 66.667 9.73 0.00 0.00 3.51
812 819 1.968540 GTCTGAACCTGGTGCTGGC 60.969 63.158 11.40 6.21 0.00 4.85
847 861 3.363970 CCTCGTAATGTTTGCTGTGTGAC 60.364 47.826 0.00 0.00 0.00 3.67
848 862 2.805671 CCTCGTAATGTTTGCTGTGTGA 59.194 45.455 0.00 0.00 0.00 3.58
869 883 2.438392 CAACCTCTCCCCCTTATGTACC 59.562 54.545 0.00 0.00 0.00 3.34
907 921 0.768221 AGCAAGGGGTGGTGAGAAGA 60.768 55.000 0.00 0.00 36.32 2.87
980 999 2.632537 TGGATCCCTATAAGCCTTCCC 58.367 52.381 9.90 0.00 0.00 3.97
1122 1141 2.028484 GACGACACTCCAACGCCA 59.972 61.111 0.00 0.00 0.00 5.69
1128 1147 0.033504 GCAAGAAGGACGACACTCCA 59.966 55.000 0.00 0.00 31.94 3.86
1587 1606 3.871248 CTCGTCCAGCAGCAGCACA 62.871 63.158 3.17 0.00 45.49 4.57
2583 2602 0.606096 TCACGATGAGGGCTTCGAAA 59.394 50.000 0.00 0.00 42.36 3.46
2589 2608 3.694746 TCGTTCACGATGAGGGCT 58.305 55.556 0.00 0.00 44.22 5.19
2811 2830 4.379243 CACGCGCCTCCTCACCTT 62.379 66.667 5.73 0.00 0.00 3.50
2871 2890 4.943822 TTGCATGCATGGCAATGG 57.056 50.000 27.34 0.91 45.57 3.16
2875 2894 3.329929 TTACAATTTGCATGCATGGCA 57.670 38.095 27.34 21.38 44.86 4.92
2876 2895 4.496673 CCAATTACAATTTGCATGCATGGC 60.497 41.667 27.34 19.18 0.00 4.40
2877 2896 4.636648 ACCAATTACAATTTGCATGCATGG 59.363 37.500 27.34 23.23 0.00 3.66
2878 2897 5.351740 TGACCAATTACAATTTGCATGCATG 59.648 36.000 23.37 22.70 0.00 4.06
2879 2898 5.489249 TGACCAATTACAATTTGCATGCAT 58.511 33.333 23.37 8.77 0.00 3.96
3012 3033 4.352298 AGAACTTGATCAACCTCTTCCCTT 59.648 41.667 3.38 0.00 0.00 3.95
3013 3034 3.913163 AGAACTTGATCAACCTCTTCCCT 59.087 43.478 3.38 0.00 0.00 4.20
3071 3092 4.742417 TCATCCGTAAATTGCATTGTTGG 58.258 39.130 0.00 0.00 0.00 3.77
3087 3108 4.031765 CCTATTCGCAATTCGTATCATCCG 59.968 45.833 0.00 0.00 39.67 4.18
3142 3173 3.702045 AGAACCGACTAAGAATCTCCTGG 59.298 47.826 0.00 0.00 0.00 4.45
3211 3242 2.123589 TGTGACACTTTCCCTTGGAGA 58.876 47.619 7.20 0.00 31.21 3.71
3265 3297 3.839432 GGCCTTCGACGGGAGAGG 61.839 72.222 10.33 1.87 0.00 3.69
3275 3307 4.937696 AAAAACAAACAAAAGGCCTTCG 57.062 36.364 20.79 15.77 0.00 3.79
3294 3326 9.271828 GCCTTCCTTTCATCAATTAAAGAAAAA 57.728 29.630 0.85 0.00 35.19 1.94
3295 3327 7.877612 GGCCTTCCTTTCATCAATTAAAGAAAA 59.122 33.333 0.00 0.00 35.19 2.29
3296 3328 7.235399 AGGCCTTCCTTTCATCAATTAAAGAAA 59.765 33.333 0.00 0.00 40.66 2.52
3297 3329 6.725834 AGGCCTTCCTTTCATCAATTAAAGAA 59.274 34.615 0.00 0.00 40.66 2.52
3298 3330 6.256053 AGGCCTTCCTTTCATCAATTAAAGA 58.744 36.000 0.00 0.00 40.66 2.52
3299 3331 6.535963 AGGCCTTCCTTTCATCAATTAAAG 57.464 37.500 0.00 0.00 40.66 1.85
3314 3346 1.581934 GCACAAACAAAAGGCCTTCC 58.418 50.000 20.79 0.00 0.00 3.46
3315 3347 1.208259 CGCACAAACAAAAGGCCTTC 58.792 50.000 20.79 1.26 0.00 3.46
3316 3348 0.809636 GCGCACAAACAAAAGGCCTT 60.810 50.000 13.78 13.78 0.00 4.35
3317 3349 1.227234 GCGCACAAACAAAAGGCCT 60.227 52.632 0.00 0.00 0.00 5.19
3318 3350 2.243957 GGCGCACAAACAAAAGGCC 61.244 57.895 10.83 0.00 0.00 5.19
3319 3351 1.086634 TTGGCGCACAAACAAAAGGC 61.087 50.000 10.83 0.00 35.79 4.35
3320 3352 0.929615 CTTGGCGCACAAACAAAAGG 59.070 50.000 10.83 0.00 38.91 3.11
3321 3353 0.929615 CCTTGGCGCACAAACAAAAG 59.070 50.000 10.83 0.00 38.91 2.27
3322 3354 0.460987 CCCTTGGCGCACAAACAAAA 60.461 50.000 10.83 0.00 38.91 2.44
3323 3355 1.142748 CCCTTGGCGCACAAACAAA 59.857 52.632 10.83 0.00 38.91 2.83
3324 3356 2.790791 CCCCTTGGCGCACAAACAA 61.791 57.895 10.83 2.34 38.91 2.83
3325 3357 2.626255 TACCCCTTGGCGCACAAACA 62.626 55.000 10.83 0.00 38.91 2.83
3326 3358 1.862602 CTACCCCTTGGCGCACAAAC 61.863 60.000 10.83 0.00 38.91 2.93
3327 3359 1.602323 CTACCCCTTGGCGCACAAA 60.602 57.895 10.83 0.00 38.91 2.83
3328 3360 2.033448 CTACCCCTTGGCGCACAA 59.967 61.111 10.83 10.48 37.55 3.33
3329 3361 4.715523 GCTACCCCTTGGCGCACA 62.716 66.667 10.83 1.22 33.01 4.57
3330 3362 4.410400 AGCTACCCCTTGGCGCAC 62.410 66.667 10.83 0.00 34.68 5.34
3331 3363 4.408821 CAGCTACCCCTTGGCGCA 62.409 66.667 10.83 0.00 34.68 6.09
3333 3365 1.906105 TTACCAGCTACCCCTTGGCG 61.906 60.000 0.00 0.00 35.35 5.69
3334 3366 0.330267 TTTACCAGCTACCCCTTGGC 59.670 55.000 0.00 0.00 35.35 4.52
3335 3367 2.723273 CTTTTACCAGCTACCCCTTGG 58.277 52.381 0.00 0.00 37.98 3.61
3349 3381 3.315191 TGCTCACTTGGTCTTGCTTTTAC 59.685 43.478 0.00 0.00 0.00 2.01
3350 3382 3.550820 TGCTCACTTGGTCTTGCTTTTA 58.449 40.909 0.00 0.00 0.00 1.52
3375 3407 4.693566 TGCCCGTACTTTTTCATCACTTAG 59.306 41.667 0.00 0.00 0.00 2.18
3458 3491 5.123979 GTCAATTAACACCTGGATCTTGGAC 59.876 44.000 0.00 0.00 0.00 4.02
3486 3519 9.532697 GTACTTAATTTGCGTATTCTCGAAAAA 57.467 29.630 0.00 0.00 40.89 1.94
3487 3520 8.170553 GGTACTTAATTTGCGTATTCTCGAAAA 58.829 33.333 0.00 0.00 41.60 2.29
3488 3521 7.546667 AGGTACTTAATTTGCGTATTCTCGAAA 59.453 33.333 0.00 0.00 27.25 3.46
3489 3522 7.037438 AGGTACTTAATTTGCGTATTCTCGAA 58.963 34.615 0.00 0.00 27.25 3.71
3490 3523 6.567050 AGGTACTTAATTTGCGTATTCTCGA 58.433 36.000 0.00 0.00 27.25 4.04
3491 3524 6.823678 AGGTACTTAATTTGCGTATTCTCG 57.176 37.500 0.00 0.00 27.25 4.04
3509 3542 7.393841 TCTCTCTTCTGTAAAGCTAAGGTAC 57.606 40.000 0.00 0.00 0.00 3.34
3510 3543 8.418597 TTTCTCTCTTCTGTAAAGCTAAGGTA 57.581 34.615 0.00 0.00 0.00 3.08
3511 3544 6.919775 TTCTCTCTTCTGTAAAGCTAAGGT 57.080 37.500 0.00 0.00 0.00 3.50
3512 3545 7.657761 TGTTTTCTCTCTTCTGTAAAGCTAAGG 59.342 37.037 0.00 0.00 0.00 2.69
3513 3546 8.594881 TGTTTTCTCTCTTCTGTAAAGCTAAG 57.405 34.615 0.00 0.00 0.00 2.18
3514 3547 8.827677 GTTGTTTTCTCTCTTCTGTAAAGCTAA 58.172 33.333 0.00 0.00 0.00 3.09
3515 3548 7.169308 CGTTGTTTTCTCTCTTCTGTAAAGCTA 59.831 37.037 0.00 0.00 0.00 3.32
3516 3549 6.018669 CGTTGTTTTCTCTCTTCTGTAAAGCT 60.019 38.462 0.00 0.00 0.00 3.74
3517 3550 6.130058 CGTTGTTTTCTCTCTTCTGTAAAGC 58.870 40.000 0.00 0.00 0.00 3.51
3518 3551 7.235430 ACGTTGTTTTCTCTCTTCTGTAAAG 57.765 36.000 0.00 0.00 0.00 1.85
3519 3552 7.760794 TGTACGTTGTTTTCTCTCTTCTGTAAA 59.239 33.333 0.00 0.00 0.00 2.01
3520 3553 7.259882 TGTACGTTGTTTTCTCTCTTCTGTAA 58.740 34.615 0.00 0.00 0.00 2.41
3521 3554 6.798482 TGTACGTTGTTTTCTCTCTTCTGTA 58.202 36.000 0.00 0.00 0.00 2.74
3522 3555 5.657474 TGTACGTTGTTTTCTCTCTTCTGT 58.343 37.500 0.00 0.00 0.00 3.41
3523 3556 6.475727 TCTTGTACGTTGTTTTCTCTCTTCTG 59.524 38.462 0.00 0.00 0.00 3.02
3524 3557 6.476053 GTCTTGTACGTTGTTTTCTCTCTTCT 59.524 38.462 0.00 0.00 0.00 2.85
3525 3558 6.476053 AGTCTTGTACGTTGTTTTCTCTCTTC 59.524 38.462 0.00 0.00 0.00 2.87
3526 3559 6.255887 CAGTCTTGTACGTTGTTTTCTCTCTT 59.744 38.462 0.00 0.00 0.00 2.85
3527 3560 5.749109 CAGTCTTGTACGTTGTTTTCTCTCT 59.251 40.000 0.00 0.00 0.00 3.10
3528 3561 5.519206 ACAGTCTTGTACGTTGTTTTCTCTC 59.481 40.000 0.00 0.00 35.25 3.20
3529 3562 5.416947 ACAGTCTTGTACGTTGTTTTCTCT 58.583 37.500 0.00 0.00 35.25 3.10
3530 3563 5.713822 ACAGTCTTGTACGTTGTTTTCTC 57.286 39.130 0.00 0.00 35.25 2.87
3531 3564 6.591062 TGTAACAGTCTTGTACGTTGTTTTCT 59.409 34.615 4.99 0.00 36.23 2.52
3532 3565 6.764094 TGTAACAGTCTTGTACGTTGTTTTC 58.236 36.000 4.99 1.51 36.23 2.29
3533 3566 6.724694 TGTAACAGTCTTGTACGTTGTTTT 57.275 33.333 4.99 0.00 36.23 2.43
3534 3567 6.711579 CATGTAACAGTCTTGTACGTTGTTT 58.288 36.000 4.99 0.00 36.23 2.83
3535 3568 5.277154 GCATGTAACAGTCTTGTACGTTGTT 60.277 40.000 0.00 0.00 36.23 2.83
3536 3569 4.210537 GCATGTAACAGTCTTGTACGTTGT 59.789 41.667 0.00 0.00 36.23 3.32
3537 3570 4.210328 TGCATGTAACAGTCTTGTACGTTG 59.790 41.667 0.00 0.00 36.23 4.10
3538 3571 4.210537 GTGCATGTAACAGTCTTGTACGTT 59.789 41.667 0.00 0.00 36.23 3.99
3539 3572 3.739300 GTGCATGTAACAGTCTTGTACGT 59.261 43.478 0.00 0.00 36.23 3.57
3540 3573 3.738791 TGTGCATGTAACAGTCTTGTACG 59.261 43.478 0.00 0.00 36.23 3.67
3541 3574 5.440685 GTTGTGCATGTAACAGTCTTGTAC 58.559 41.667 0.00 0.00 36.23 2.90
3542 3575 4.513692 GGTTGTGCATGTAACAGTCTTGTA 59.486 41.667 11.76 0.00 36.23 2.41
3543 3576 3.315191 GGTTGTGCATGTAACAGTCTTGT 59.685 43.478 11.76 0.00 39.87 3.16
3544 3577 3.314913 TGGTTGTGCATGTAACAGTCTTG 59.685 43.478 11.76 0.00 0.00 3.02
3545 3578 3.550820 TGGTTGTGCATGTAACAGTCTT 58.449 40.909 11.76 0.00 0.00 3.01
3546 3579 3.207265 TGGTTGTGCATGTAACAGTCT 57.793 42.857 11.76 0.00 0.00 3.24
3547 3580 3.066064 TGTTGGTTGTGCATGTAACAGTC 59.934 43.478 11.76 5.99 0.00 3.51
3548 3581 3.020274 TGTTGGTTGTGCATGTAACAGT 58.980 40.909 11.76 0.00 0.00 3.55
3549 3582 3.066621 ACTGTTGGTTGTGCATGTAACAG 59.933 43.478 20.65 20.65 46.21 3.16
3550 3583 3.020274 ACTGTTGGTTGTGCATGTAACA 58.980 40.909 11.76 5.82 0.00 2.41
3551 3584 3.066064 TGACTGTTGGTTGTGCATGTAAC 59.934 43.478 0.00 0.00 0.00 2.50
3552 3585 3.066064 GTGACTGTTGGTTGTGCATGTAA 59.934 43.478 0.00 0.00 0.00 2.41
3553 3586 2.616376 GTGACTGTTGGTTGTGCATGTA 59.384 45.455 0.00 0.00 0.00 2.29
3554 3587 1.405105 GTGACTGTTGGTTGTGCATGT 59.595 47.619 0.00 0.00 0.00 3.21
3555 3588 1.597690 CGTGACTGTTGGTTGTGCATG 60.598 52.381 0.00 0.00 0.00 4.06
3556 3589 0.662619 CGTGACTGTTGGTTGTGCAT 59.337 50.000 0.00 0.00 0.00 3.96
3557 3590 1.987704 GCGTGACTGTTGGTTGTGCA 61.988 55.000 0.00 0.00 0.00 4.57
3558 3591 1.298339 GCGTGACTGTTGGTTGTGC 60.298 57.895 0.00 0.00 0.00 4.57
3559 3592 1.011242 CGCGTGACTGTTGGTTGTG 60.011 57.895 0.00 0.00 0.00 3.33
3560 3593 2.819552 GCGCGTGACTGTTGGTTGT 61.820 57.895 8.43 0.00 0.00 3.32
3561 3594 2.052237 GCGCGTGACTGTTGGTTG 60.052 61.111 8.43 0.00 0.00 3.77
3562 3595 3.276846 GGCGCGTGACTGTTGGTT 61.277 61.111 8.43 0.00 0.00 3.67
3565 3598 4.059459 GTCGGCGCGTGACTGTTG 62.059 66.667 21.26 0.00 33.54 3.33
3587 3620 0.796927 GAGTTAGAGTTTGGCGTGGC 59.203 55.000 0.00 0.00 0.00 5.01
3588 3621 1.270625 TGGAGTTAGAGTTTGGCGTGG 60.271 52.381 0.00 0.00 0.00 4.94
3589 3622 2.163818 TGGAGTTAGAGTTTGGCGTG 57.836 50.000 0.00 0.00 0.00 5.34
3590 3623 2.699954 CATGGAGTTAGAGTTTGGCGT 58.300 47.619 0.00 0.00 0.00 5.68
3591 3624 1.398390 GCATGGAGTTAGAGTTTGGCG 59.602 52.381 0.00 0.00 0.00 5.69
3592 3625 2.162408 GTGCATGGAGTTAGAGTTTGGC 59.838 50.000 0.00 0.00 0.00 4.52
3593 3626 3.679389 AGTGCATGGAGTTAGAGTTTGG 58.321 45.455 0.00 0.00 0.00 3.28
3594 3627 4.327357 CGTAGTGCATGGAGTTAGAGTTTG 59.673 45.833 0.00 0.00 0.00 2.93
3595 3628 4.021368 ACGTAGTGCATGGAGTTAGAGTTT 60.021 41.667 0.00 0.00 42.51 2.66
3596 3629 3.510360 ACGTAGTGCATGGAGTTAGAGTT 59.490 43.478 0.00 0.00 42.51 3.01
3597 3630 3.090037 ACGTAGTGCATGGAGTTAGAGT 58.910 45.455 0.00 0.00 42.51 3.24
3598 3631 3.784701 ACGTAGTGCATGGAGTTAGAG 57.215 47.619 0.00 0.00 42.51 2.43
3599 3632 5.184479 AGTTTACGTAGTGCATGGAGTTAGA 59.816 40.000 0.00 0.00 45.73 2.10
3600 3633 5.408356 AGTTTACGTAGTGCATGGAGTTAG 58.592 41.667 0.00 0.00 45.73 2.34
3601 3634 5.395682 AGTTTACGTAGTGCATGGAGTTA 57.604 39.130 0.00 0.00 45.73 2.24
3602 3635 4.243270 GAGTTTACGTAGTGCATGGAGTT 58.757 43.478 0.00 0.00 45.73 3.01
3603 3636 3.368116 GGAGTTTACGTAGTGCATGGAGT 60.368 47.826 0.00 0.00 45.73 3.85
3604 3637 3.119101 AGGAGTTTACGTAGTGCATGGAG 60.119 47.826 0.00 0.00 45.73 3.86
3605 3638 2.829720 AGGAGTTTACGTAGTGCATGGA 59.170 45.455 0.00 0.00 45.73 3.41
3606 3639 3.187700 GAGGAGTTTACGTAGTGCATGG 58.812 50.000 0.00 0.00 45.73 3.66
3607 3640 3.612860 GTGAGGAGTTTACGTAGTGCATG 59.387 47.826 0.00 0.00 45.73 4.06
3608 3641 3.257375 TGTGAGGAGTTTACGTAGTGCAT 59.743 43.478 0.00 0.00 45.73 3.96
3609 3642 2.624364 TGTGAGGAGTTTACGTAGTGCA 59.376 45.455 0.00 0.00 45.73 4.57
3610 3643 3.293311 TGTGAGGAGTTTACGTAGTGC 57.707 47.619 0.00 0.00 45.73 4.40
3611 3644 6.347402 CCATTTTGTGAGGAGTTTACGTAGTG 60.347 42.308 0.00 0.00 45.73 2.74
3613 3646 5.699458 ACCATTTTGTGAGGAGTTTACGTAG 59.301 40.000 0.00 0.00 0.00 3.51
3614 3647 5.613329 ACCATTTTGTGAGGAGTTTACGTA 58.387 37.500 0.00 0.00 0.00 3.57
3615 3648 4.457466 ACCATTTTGTGAGGAGTTTACGT 58.543 39.130 0.00 0.00 0.00 3.57
3616 3649 5.432885 AACCATTTTGTGAGGAGTTTACG 57.567 39.130 0.00 0.00 0.00 3.18
3617 3650 6.801575 TGAAACCATTTTGTGAGGAGTTTAC 58.198 36.000 0.00 0.00 0.00 2.01
3618 3651 7.123547 AGTTGAAACCATTTTGTGAGGAGTTTA 59.876 33.333 0.00 0.00 0.00 2.01
3619 3652 5.930837 TGAAACCATTTTGTGAGGAGTTT 57.069 34.783 0.00 0.00 0.00 2.66
3620 3653 5.422012 AGTTGAAACCATTTTGTGAGGAGTT 59.578 36.000 0.00 0.00 0.00 3.01
3621 3654 4.956075 AGTTGAAACCATTTTGTGAGGAGT 59.044 37.500 0.00 0.00 0.00 3.85
3622 3655 5.507985 GGAGTTGAAACCATTTTGTGAGGAG 60.508 44.000 0.00 0.00 0.00 3.69
3623 3656 4.340950 GGAGTTGAAACCATTTTGTGAGGA 59.659 41.667 0.00 0.00 0.00 3.71
3624 3657 4.099266 TGGAGTTGAAACCATTTTGTGAGG 59.901 41.667 0.00 0.00 0.00 3.86
3625 3658 5.043248 GTGGAGTTGAAACCATTTTGTGAG 58.957 41.667 0.00 0.00 38.48 3.51
3626 3659 4.439426 CGTGGAGTTGAAACCATTTTGTGA 60.439 41.667 0.00 0.00 38.48 3.58
3627 3660 3.796178 CGTGGAGTTGAAACCATTTTGTG 59.204 43.478 0.00 0.00 38.48 3.33
3628 3661 3.736740 GCGTGGAGTTGAAACCATTTTGT 60.737 43.478 0.00 0.00 38.48 2.83
3629 3662 2.794350 GCGTGGAGTTGAAACCATTTTG 59.206 45.455 0.00 0.00 38.48 2.44
3630 3663 2.223947 GGCGTGGAGTTGAAACCATTTT 60.224 45.455 0.00 0.00 38.48 1.82
3631 3664 1.339929 GGCGTGGAGTTGAAACCATTT 59.660 47.619 0.00 0.00 38.48 2.32
3632 3665 0.958822 GGCGTGGAGTTGAAACCATT 59.041 50.000 0.00 0.00 38.48 3.16
3633 3666 0.893727 GGGCGTGGAGTTGAAACCAT 60.894 55.000 0.00 0.00 38.48 3.55
3634 3667 1.527380 GGGCGTGGAGTTGAAACCA 60.527 57.895 0.00 0.00 0.00 3.67
3635 3668 1.228154 AGGGCGTGGAGTTGAAACC 60.228 57.895 0.00 0.00 0.00 3.27
3636 3669 1.235281 GGAGGGCGTGGAGTTGAAAC 61.235 60.000 0.00 0.00 0.00 2.78
3637 3670 1.072505 GGAGGGCGTGGAGTTGAAA 59.927 57.895 0.00 0.00 0.00 2.69
3638 3671 2.747686 GGAGGGCGTGGAGTTGAA 59.252 61.111 0.00 0.00 0.00 2.69
3639 3672 3.319198 GGGAGGGCGTGGAGTTGA 61.319 66.667 0.00 0.00 0.00 3.18
3640 3673 4.760047 CGGGAGGGCGTGGAGTTG 62.760 72.222 0.00 0.00 0.00 3.16
3644 3677 4.853142 ATAGCGGGAGGGCGTGGA 62.853 66.667 0.00 0.00 38.18 4.02
3645 3678 4.301027 GATAGCGGGAGGGCGTGG 62.301 72.222 0.00 0.00 38.18 4.94
3646 3679 4.647615 CGATAGCGGGAGGGCGTG 62.648 72.222 0.00 0.00 38.18 5.34
3664 3697 2.827190 ATGAGCTGCGCATGTGGG 60.827 61.111 18.06 0.00 0.00 4.61
3665 3698 0.531311 TAGATGAGCTGCGCATGTGG 60.531 55.000 23.36 0.00 0.00 4.17
3666 3699 0.859882 CTAGATGAGCTGCGCATGTG 59.140 55.000 23.36 10.33 0.00 3.21
3667 3700 0.749049 TCTAGATGAGCTGCGCATGT 59.251 50.000 23.36 20.92 0.00 3.21
3668 3701 1.861971 TTCTAGATGAGCTGCGCATG 58.138 50.000 23.36 9.48 0.00 4.06
3669 3702 2.299582 AGATTCTAGATGAGCTGCGCAT 59.700 45.455 18.77 18.77 0.00 4.73
3670 3703 1.685517 AGATTCTAGATGAGCTGCGCA 59.314 47.619 10.98 10.98 0.00 6.09
3671 3704 2.437200 AGATTCTAGATGAGCTGCGC 57.563 50.000 0.00 0.00 0.00 6.09
3672 3705 7.596621 TGTAAATAAGATTCTAGATGAGCTGCG 59.403 37.037 0.00 0.00 0.00 5.18
3673 3706 8.824159 TGTAAATAAGATTCTAGATGAGCTGC 57.176 34.615 0.00 0.00 0.00 5.25
3686 3719 9.976511 TCGATTACCGATCTTGTAAATAAGATT 57.023 29.630 8.28 0.00 45.00 2.40
3702 3735 0.597568 ACACCAACGTCGATTACCGA 59.402 50.000 0.00 0.00 46.35 4.69
3703 3736 0.711670 CACACCAACGTCGATTACCG 59.288 55.000 0.00 0.00 40.25 4.02
3704 3737 1.073177 CCACACCAACGTCGATTACC 58.927 55.000 0.00 0.00 0.00 2.85
3705 3738 0.441145 GCCACACCAACGTCGATTAC 59.559 55.000 0.00 0.00 0.00 1.89
3706 3739 0.671163 GGCCACACCAACGTCGATTA 60.671 55.000 0.00 0.00 38.86 1.75
3707 3740 1.964373 GGCCACACCAACGTCGATT 60.964 57.895 0.00 0.00 38.86 3.34
3708 3741 2.358247 GGCCACACCAACGTCGAT 60.358 61.111 0.00 0.00 38.86 3.59
3718 3751 3.950794 TTCCGCTCGATGGCCACAC 62.951 63.158 8.16 4.31 0.00 3.82
3719 3752 2.739849 TTTTCCGCTCGATGGCCACA 62.740 55.000 8.16 0.00 0.00 4.17
3720 3753 2.038269 TTTTCCGCTCGATGGCCAC 61.038 57.895 8.16 0.47 0.00 5.01
3721 3754 2.038269 GTTTTCCGCTCGATGGCCA 61.038 57.895 8.56 8.56 0.00 5.36
3722 3755 2.038269 TGTTTTCCGCTCGATGGCC 61.038 57.895 0.00 0.00 0.00 5.36
3723 3756 1.134694 GTGTTTTCCGCTCGATGGC 59.865 57.895 0.00 0.00 0.00 4.40
3724 3757 1.419922 CGTGTTTTCCGCTCGATGG 59.580 57.895 0.00 0.00 0.00 3.51
3725 3758 1.289109 ACCGTGTTTTCCGCTCGATG 61.289 55.000 0.00 0.00 0.00 3.84
3726 3759 1.005394 ACCGTGTTTTCCGCTCGAT 60.005 52.632 0.00 0.00 0.00 3.59
3727 3760 1.662446 GACCGTGTTTTCCGCTCGA 60.662 57.895 0.00 0.00 0.00 4.04
3728 3761 1.289109 ATGACCGTGTTTTCCGCTCG 61.289 55.000 0.00 0.00 0.00 5.03
3729 3762 0.872388 AATGACCGTGTTTTCCGCTC 59.128 50.000 0.00 0.00 0.00 5.03
3730 3763 0.872388 GAATGACCGTGTTTTCCGCT 59.128 50.000 0.00 0.00 0.00 5.52
3731 3764 0.109919 GGAATGACCGTGTTTTCCGC 60.110 55.000 0.00 0.00 0.00 5.54
3732 3765 1.519408 AGGAATGACCGTGTTTTCCG 58.481 50.000 10.87 0.00 42.00 4.30
3733 3766 3.638484 CAAAGGAATGACCGTGTTTTCC 58.362 45.455 9.61 9.61 44.74 3.13
3734 3767 3.049912 GCAAAGGAATGACCGTGTTTTC 58.950 45.455 0.00 0.00 44.74 2.29
3735 3768 2.693074 AGCAAAGGAATGACCGTGTTTT 59.307 40.909 0.00 0.00 44.74 2.43
3736 3769 2.306847 AGCAAAGGAATGACCGTGTTT 58.693 42.857 0.00 0.00 44.74 2.83
3737 3770 1.981256 AGCAAAGGAATGACCGTGTT 58.019 45.000 0.00 0.00 44.74 3.32
3738 3771 1.880027 GAAGCAAAGGAATGACCGTGT 59.120 47.619 0.00 0.00 44.74 4.49
3739 3772 1.200020 GGAAGCAAAGGAATGACCGTG 59.800 52.381 0.00 0.00 44.74 4.94
3740 3773 1.202879 TGGAAGCAAAGGAATGACCGT 60.203 47.619 0.00 0.00 44.74 4.83
3741 3774 1.533625 TGGAAGCAAAGGAATGACCG 58.466 50.000 0.00 0.00 44.74 4.79
3742 3775 4.706962 ACTTATGGAAGCAAAGGAATGACC 59.293 41.667 0.00 0.00 35.97 4.02
3743 3776 5.644644 CACTTATGGAAGCAAAGGAATGAC 58.355 41.667 0.00 0.00 35.97 3.06
3744 3777 4.158394 GCACTTATGGAAGCAAAGGAATGA 59.842 41.667 0.00 0.00 35.97 2.57
3745 3778 4.427312 GCACTTATGGAAGCAAAGGAATG 58.573 43.478 0.00 0.00 35.97 2.67
3746 3779 3.448660 GGCACTTATGGAAGCAAAGGAAT 59.551 43.478 0.00 0.00 35.97 3.01
3747 3780 2.825532 GGCACTTATGGAAGCAAAGGAA 59.174 45.455 0.00 0.00 35.97 3.36
3748 3781 2.224992 TGGCACTTATGGAAGCAAAGGA 60.225 45.455 0.00 0.00 35.97 3.36
3749 3782 2.170166 TGGCACTTATGGAAGCAAAGG 58.830 47.619 0.00 0.00 35.97 3.11
3750 3783 3.005684 TGTTGGCACTTATGGAAGCAAAG 59.994 43.478 0.00 0.00 35.97 2.77
3751 3784 2.961741 TGTTGGCACTTATGGAAGCAAA 59.038 40.909 0.00 0.00 35.97 3.68
3752 3785 2.295909 GTGTTGGCACTTATGGAAGCAA 59.704 45.455 0.00 0.00 42.13 3.91
3753 3786 1.885887 GTGTTGGCACTTATGGAAGCA 59.114 47.619 0.00 0.00 42.13 3.91
3754 3787 1.885887 TGTGTTGGCACTTATGGAAGC 59.114 47.619 0.00 0.00 45.44 3.86
3755 3788 3.149196 AGTGTGTTGGCACTTATGGAAG 58.851 45.455 0.00 0.00 46.45 3.46
3756 3789 3.222173 AGTGTGTTGGCACTTATGGAA 57.778 42.857 0.00 0.00 46.45 3.53
3757 3790 2.949177 AGTGTGTTGGCACTTATGGA 57.051 45.000 0.00 0.00 46.45 3.41
3758 3791 2.420022 GCTAGTGTGTTGGCACTTATGG 59.580 50.000 4.01 0.00 46.45 2.74
3759 3792 3.073678 TGCTAGTGTGTTGGCACTTATG 58.926 45.455 4.01 0.00 46.45 1.90
3760 3793 3.417069 TGCTAGTGTGTTGGCACTTAT 57.583 42.857 4.01 0.00 46.45 1.73
3761 3794 2.920724 TGCTAGTGTGTTGGCACTTA 57.079 45.000 4.01 0.00 46.45 2.24
3762 3795 2.154462 GATGCTAGTGTGTTGGCACTT 58.846 47.619 4.01 0.00 46.45 3.16
3764 3797 1.197721 GTGATGCTAGTGTGTTGGCAC 59.802 52.381 0.00 0.00 45.44 5.01
3765 3798 1.522668 GTGATGCTAGTGTGTTGGCA 58.477 50.000 0.00 0.00 39.06 4.92
3766 3799 0.804989 GGTGATGCTAGTGTGTTGGC 59.195 55.000 0.00 0.00 0.00 4.52
3767 3800 2.183478 TGGTGATGCTAGTGTGTTGG 57.817 50.000 0.00 0.00 0.00 3.77
3768 3801 3.565482 AGTTTGGTGATGCTAGTGTGTTG 59.435 43.478 0.00 0.00 0.00 3.33
3769 3802 3.820557 AGTTTGGTGATGCTAGTGTGTT 58.179 40.909 0.00 0.00 0.00 3.32
3770 3803 3.492102 AGTTTGGTGATGCTAGTGTGT 57.508 42.857 0.00 0.00 0.00 3.72
3771 3804 5.178061 TGATAGTTTGGTGATGCTAGTGTG 58.822 41.667 0.00 0.00 0.00 3.82
3772 3805 5.420725 TGATAGTTTGGTGATGCTAGTGT 57.579 39.130 0.00 0.00 0.00 3.55
3773 3806 6.741992 TTTGATAGTTTGGTGATGCTAGTG 57.258 37.500 0.00 0.00 0.00 2.74
3774 3807 6.127897 GCTTTTGATAGTTTGGTGATGCTAGT 60.128 38.462 0.00 0.00 0.00 2.57
3775 3808 6.094603 AGCTTTTGATAGTTTGGTGATGCTAG 59.905 38.462 0.00 0.00 0.00 3.42
3776 3809 5.945784 AGCTTTTGATAGTTTGGTGATGCTA 59.054 36.000 0.00 0.00 0.00 3.49
3777 3810 4.768968 AGCTTTTGATAGTTTGGTGATGCT 59.231 37.500 0.00 0.00 0.00 3.79
3778 3811 5.064441 AGCTTTTGATAGTTTGGTGATGC 57.936 39.130 0.00 0.00 0.00 3.91
3779 3812 6.128742 GCAAAGCTTTTGATAGTTTGGTGATG 60.129 38.462 9.53 0.00 0.00 3.07
3780 3813 5.928264 GCAAAGCTTTTGATAGTTTGGTGAT 59.072 36.000 9.53 0.00 0.00 3.06
3781 3814 5.288804 GCAAAGCTTTTGATAGTTTGGTGA 58.711 37.500 9.53 0.00 0.00 4.02
3782 3815 4.148696 CGCAAAGCTTTTGATAGTTTGGTG 59.851 41.667 9.53 0.00 0.00 4.17
3783 3816 4.298332 CGCAAAGCTTTTGATAGTTTGGT 58.702 39.130 9.53 0.00 0.00 3.67
3784 3817 3.674753 CCGCAAAGCTTTTGATAGTTTGG 59.325 43.478 9.53 0.00 0.00 3.28
3785 3818 4.298332 ACCGCAAAGCTTTTGATAGTTTG 58.702 39.130 9.53 0.00 0.00 2.93
3786 3819 4.584327 ACCGCAAAGCTTTTGATAGTTT 57.416 36.364 9.53 0.00 0.00 2.66
3787 3820 4.278419 AGAACCGCAAAGCTTTTGATAGTT 59.722 37.500 9.53 8.99 0.00 2.24
3788 3821 3.821033 AGAACCGCAAAGCTTTTGATAGT 59.179 39.130 9.53 0.16 0.00 2.12
3789 3822 4.406943 GAGAACCGCAAAGCTTTTGATAG 58.593 43.478 9.53 0.00 0.00 2.08
3790 3823 3.190535 GGAGAACCGCAAAGCTTTTGATA 59.809 43.478 9.53 0.00 0.00 2.15
3791 3824 2.029918 GGAGAACCGCAAAGCTTTTGAT 60.030 45.455 9.53 0.00 0.00 2.57
3792 3825 1.336755 GGAGAACCGCAAAGCTTTTGA 59.663 47.619 9.53 0.00 0.00 2.69
3793 3826 1.338020 AGGAGAACCGCAAAGCTTTTG 59.662 47.619 9.53 5.06 41.83 2.44
3794 3827 1.692411 AGGAGAACCGCAAAGCTTTT 58.308 45.000 9.53 0.00 41.83 2.27
3795 3828 1.338020 CAAGGAGAACCGCAAAGCTTT 59.662 47.619 5.69 5.69 41.83 3.51
3796 3829 0.954452 CAAGGAGAACCGCAAAGCTT 59.046 50.000 0.00 0.00 41.83 3.74
3797 3830 0.179018 ACAAGGAGAACCGCAAAGCT 60.179 50.000 0.00 0.00 41.83 3.74
3798 3831 0.238553 GACAAGGAGAACCGCAAAGC 59.761 55.000 0.00 0.00 41.83 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.