Multiple sequence alignment - TraesCS3B01G251100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G251100 chr3B 100.000 3555 0 0 1 3555 401414669 401411115 0.000000e+00 6565.0
1 TraesCS3B01G251100 chr3B 95.000 40 2 0 3515 3554 465064714 465064675 2.960000e-06 63.9
2 TraesCS3B01G251100 chr3B 90.909 44 4 0 3510 3553 519057423 519057380 3.830000e-05 60.2
3 TraesCS3B01G251100 chr3D 96.070 2112 50 16 834 2926 317550883 317552980 0.000000e+00 3410.0
4 TraesCS3B01G251100 chr3D 97.537 203 5 0 3315 3517 317553039 317553241 7.300000e-92 348.0
5 TraesCS3B01G251100 chr3D 88.031 259 20 5 578 834 317485581 317485830 2.680000e-76 296.0
6 TraesCS3B01G251100 chr3D 91.503 153 5 7 424 569 67064762 67064913 1.670000e-48 204.0
7 TraesCS3B01G251100 chr3D 100.000 71 0 0 3197 3267 317552971 317553041 8.010000e-27 132.0
8 TraesCS3B01G251100 chr3A 94.667 2119 66 15 834 2926 447277566 447275469 0.000000e+00 3243.0
9 TraesCS3B01G251100 chr3A 94.385 2048 56 15 905 2926 408949508 408947494 0.000000e+00 3090.0
10 TraesCS3B01G251100 chr3A 92.760 442 25 3 1 442 447288773 447288339 1.800000e-177 632.0
11 TraesCS3B01G251100 chr3A 96.605 324 8 1 3197 3517 447275478 447275155 5.220000e-148 534.0
12 TraesCS3B01G251100 chr3A 95.016 321 10 1 3197 3517 408947503 408947189 1.910000e-137 499.0
13 TraesCS3B01G251100 chr3A 91.483 317 20 3 1 317 408980564 408980255 2.540000e-116 429.0
14 TraesCS3B01G251100 chr3A 76.064 869 159 27 1579 2415 683449635 683448784 1.190000e-109 407.0
15 TraesCS3B01G251100 chr3A 94.545 165 9 0 685 849 408970960 408970796 4.550000e-64 255.0
16 TraesCS3B01G251100 chr3A 93.333 165 11 0 685 849 447287913 447287749 9.860000e-61 244.0
17 TraesCS3B01G251100 chr3A 89.888 178 16 2 2929 3104 1882452 1882629 9.930000e-56 228.0
18 TraesCS3B01G251100 chr3A 91.216 148 6 6 433 574 469077572 469077426 1.010000e-45 195.0
19 TraesCS3B01G251100 chr3A 92.308 130 10 0 313 442 408971515 408971386 6.060000e-43 185.0
20 TraesCS3B01G251100 chr3A 93.333 120 8 0 566 685 408971376 408971257 1.010000e-40 178.0
21 TraesCS3B01G251100 chr3A 93.333 120 8 0 566 685 447288329 447288210 1.010000e-40 178.0
22 TraesCS3B01G251100 chr3A 95.000 40 2 0 3515 3554 465962263 465962302 2.960000e-06 63.9
23 TraesCS3B01G251100 chr4D 76.832 846 172 20 1563 2396 1198321 1199154 4.180000e-124 455.0
24 TraesCS3B01G251100 chr4D 85.615 431 48 8 1005 1428 1197805 1198228 1.170000e-119 440.0
25 TraesCS3B01G251100 chr4B 85.977 435 50 8 1005 1429 825924 825491 4.180000e-124 455.0
26 TraesCS3B01G251100 chr4B 76.359 846 174 20 1571 2403 825411 824579 7.050000e-117 431.0
27 TraesCS3B01G251100 chr5B 97.037 270 7 1 2929 3198 243701598 243701330 1.500000e-123 453.0
28 TraesCS3B01G251100 chr5B 95.238 126 5 1 448 572 555175723 555175598 7.780000e-47 198.0
29 TraesCS3B01G251100 chr5B 95.122 41 2 0 3514 3554 11310129 11310089 8.240000e-07 65.8
30 TraesCS3B01G251100 chr5B 92.500 40 3 0 3516 3555 495860524 495860485 1.380000e-04 58.4
31 TraesCS3B01G251100 chr7A 92.453 265 10 8 2929 3190 332159824 332159567 1.560000e-98 370.0
32 TraesCS3B01G251100 chr7A 88.321 274 28 2 7 279 401441566 401441296 3.420000e-85 326.0
33 TraesCS3B01G251100 chr7A 85.034 294 41 3 5 297 335606748 335607039 2.680000e-76 296.0
34 TraesCS3B01G251100 chr7A 81.757 148 14 10 3052 3191 106807909 106808051 1.040000e-20 111.0
35 TraesCS3B01G251100 chr7B 90.000 280 24 2 1 279 356563542 356563266 3.370000e-95 359.0
36 TraesCS3B01G251100 chr7B 88.571 280 26 3 1 279 114647042 114647316 5.690000e-88 335.0
37 TraesCS3B01G251100 chr7B 92.029 138 6 3 435 567 697933627 697933490 4.690000e-44 189.0
38 TraesCS3B01G251100 chr7B 88.462 156 9 7 418 567 72021729 72021881 2.820000e-41 180.0
39 TraesCS3B01G251100 chr7B 92.105 38 3 0 3516 3553 678552329 678552366 2.000000e-03 54.7
40 TraesCS3B01G251100 chr5A 89.531 277 24 4 5 279 354092476 354092203 2.630000e-91 346.0
41 TraesCS3B01G251100 chr5A 87.197 289 32 4 1 287 299351728 299351443 1.230000e-84 324.0
42 TraesCS3B01G251100 chr5A 89.266 177 8 4 2930 3105 697717283 697717449 1.000000e-50 211.0
43 TraesCS3B01G251100 chr5A 94.030 134 2 5 441 568 508283649 508283782 7.780000e-47 198.0
44 TraesCS3B01G251100 chr5A 93.284 134 4 4 443 571 583158640 583158507 3.620000e-45 193.0
45 TraesCS3B01G251100 chr5A 76.619 278 45 13 2931 3192 158651714 158651987 6.190000e-28 135.0
46 TraesCS3B01G251100 chr2A 89.098 266 23 5 2929 3189 327149415 327149679 3.420000e-85 326.0
47 TraesCS3B01G251100 chr6B 86.851 289 33 4 1 287 134593257 134592972 5.730000e-83 318.0
48 TraesCS3B01G251100 chr6B 95.200 125 5 1 448 571 716890350 716890474 2.800000e-46 196.0
49 TraesCS3B01G251100 chr6B 92.500 40 3 0 3516 3555 449768094 449768133 1.380000e-04 58.4
50 TraesCS3B01G251100 chr4A 94.531 128 4 3 442 567 709857066 709857192 1.010000e-45 195.0
51 TraesCS3B01G251100 chr4A 90.698 43 2 2 3514 3555 668265647 668265606 4.960000e-04 56.5
52 TraesCS3B01G251100 chr1B 89.933 149 8 6 432 573 574440627 574440775 6.060000e-43 185.0
53 TraesCS3B01G251100 chr1B 92.500 40 3 0 3516 3555 133715650 133715689 1.380000e-04 58.4
54 TraesCS3B01G251100 chr2B 87.821 156 13 4 418 568 603917182 603917336 1.010000e-40 178.0
55 TraesCS3B01G251100 chr7D 93.103 58 3 1 3133 3190 180735743 180735687 2.270000e-12 84.2
56 TraesCS3B01G251100 chr6A 92.857 42 3 0 3514 3555 512238378 512238337 1.070000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G251100 chr3B 401411115 401414669 3554 True 6565.000000 6565 100.000000 1 3555 1 chr3B.!!$R1 3554
1 TraesCS3B01G251100 chr3D 317550883 317553241 2358 False 1296.666667 3410 97.869000 834 3517 3 chr3D.!!$F3 2683
2 TraesCS3B01G251100 chr3A 447275155 447277566 2411 True 1888.500000 3243 95.636000 834 3517 2 chr3A.!!$R6 2683
3 TraesCS3B01G251100 chr3A 408947189 408949508 2319 True 1794.500000 3090 94.700500 905 3517 2 chr3A.!!$R4 2612
4 TraesCS3B01G251100 chr3A 683448784 683449635 851 True 407.000000 407 76.064000 1579 2415 1 chr3A.!!$R3 836
5 TraesCS3B01G251100 chr3A 447287749 447288773 1024 True 351.333333 632 93.142000 1 849 3 chr3A.!!$R7 848
6 TraesCS3B01G251100 chr3A 408970796 408971515 719 True 206.000000 255 93.395333 313 849 3 chr3A.!!$R5 536
7 TraesCS3B01G251100 chr4D 1197805 1199154 1349 False 447.500000 455 81.223500 1005 2396 2 chr4D.!!$F1 1391
8 TraesCS3B01G251100 chr4B 824579 825924 1345 True 443.000000 455 81.168000 1005 2403 2 chr4B.!!$R1 1398

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
363 364 0.530288 GTTGGGCGGCAATGTGTTAT 59.470 50.000 12.47 0.0 0.00 1.89 F
752 1050 0.608035 CCTTGCTAAAGTTGCCCCGA 60.608 55.000 0.00 0.0 0.00 5.14 F
1526 1859 1.664659 CGGACGAGTGACGAATCTAGT 59.335 52.381 0.00 0.0 45.77 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1558 1891 0.666274 TTTCGTGACCTACAGCAGCG 60.666 55.0 0.0 0.0 0.0 5.18 R
1559 1892 1.726853 ATTTCGTGACCTACAGCAGC 58.273 50.0 0.0 0.0 0.0 5.25 R
2924 3315 0.107508 CATCTCCAACGCCCAGACAT 60.108 55.0 0.0 0.0 0.0 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.030540 TGCAGCAGAGCAAATCAAAGAC 60.031 45.455 0.00 0.00 42.46 3.01
35 36 4.739716 GCAGAGCAAATCAAAGACGAAAAA 59.260 37.500 0.00 0.00 0.00 1.94
36 37 5.403466 GCAGAGCAAATCAAAGACGAAAAAT 59.597 36.000 0.00 0.00 0.00 1.82
37 38 6.614999 GCAGAGCAAATCAAAGACGAAAAATG 60.615 38.462 0.00 0.00 0.00 2.32
38 39 6.418819 CAGAGCAAATCAAAGACGAAAAATGT 59.581 34.615 0.00 0.00 0.00 2.71
39 40 7.591057 CAGAGCAAATCAAAGACGAAAAATGTA 59.409 33.333 0.00 0.00 0.00 2.29
41 42 6.640907 AGCAAATCAAAGACGAAAAATGTACC 59.359 34.615 0.00 0.00 0.00 3.34
42 43 6.640907 GCAAATCAAAGACGAAAAATGTACCT 59.359 34.615 0.00 0.00 0.00 3.08
62 63 6.332976 ACCTTCATGTTTATGATTCCCTCT 57.667 37.500 0.00 0.00 42.60 3.69
64 65 7.872138 ACCTTCATGTTTATGATTCCCTCTTA 58.128 34.615 0.00 0.00 42.60 2.10
69 70 9.527157 TCATGTTTATGATTCCCTCTTACAAAA 57.473 29.630 0.00 0.00 38.37 2.44
122 123 7.388437 TGCACATGATTGAGATGCATATACTA 58.612 34.615 0.00 0.00 41.18 1.82
182 183 5.873732 GCTTGAGCAAACAAGGTTAGATAG 58.126 41.667 16.00 0.00 44.87 2.08
199 200 7.550906 GGTTAGATAGCACAAGAGAACTTCAAT 59.449 37.037 0.00 0.00 33.70 2.57
201 202 6.705302 AGATAGCACAAGAGAACTTCAATCA 58.295 36.000 0.00 0.00 33.70 2.57
239 240 3.981071 TCCACAAGGATACCAAGACTG 57.019 47.619 0.00 0.00 39.61 3.51
240 241 3.516586 TCCACAAGGATACCAAGACTGA 58.483 45.455 0.00 0.00 39.61 3.41
290 291 4.857509 AGTGAGTACTCTGTTGAAGACC 57.142 45.455 23.01 0.00 28.79 3.85
295 296 3.635373 AGTACTCTGTTGAAGACCGAACA 59.365 43.478 0.00 0.00 0.00 3.18
332 333 3.495377 GCATGAAGATCTCACTGAGCATC 59.505 47.826 0.00 5.93 36.69 3.91
333 334 4.694339 CATGAAGATCTCACTGAGCATCA 58.306 43.478 15.26 10.79 41.87 3.07
363 364 0.530288 GTTGGGCGGCAATGTGTTAT 59.470 50.000 12.47 0.00 0.00 1.89
439 440 9.781834 GATTTGTTGTATTCGGATGAATTGTTA 57.218 29.630 0.00 0.00 42.14 2.41
442 443 8.330466 TGTTGTATTCGGATGAATTGTTAGTT 57.670 30.769 0.00 0.00 42.14 2.24
443 444 8.788806 TGTTGTATTCGGATGAATTGTTAGTTT 58.211 29.630 0.00 0.00 42.14 2.66
450 451 8.882415 TCGGATGAATTGTTAGTTTATACTCC 57.118 34.615 0.00 0.00 35.78 3.85
451 452 7.929785 TCGGATGAATTGTTAGTTTATACTCCC 59.070 37.037 0.00 0.00 35.78 4.30
452 453 7.931948 CGGATGAATTGTTAGTTTATACTCCCT 59.068 37.037 0.00 0.00 35.78 4.20
453 454 9.274206 GGATGAATTGTTAGTTTATACTCCCTC 57.726 37.037 0.00 0.00 35.78 4.30
455 456 9.838339 ATGAATTGTTAGTTTATACTCCCTCTG 57.162 33.333 0.00 0.00 35.78 3.35
456 457 8.265055 TGAATTGTTAGTTTATACTCCCTCTGG 58.735 37.037 0.00 0.00 35.78 3.86
457 458 7.989947 ATTGTTAGTTTATACTCCCTCTGGA 57.010 36.000 0.00 0.00 38.75 3.86
458 459 7.801893 TTGTTAGTTTATACTCCCTCTGGAA 57.198 36.000 0.00 0.00 41.17 3.53
459 460 7.801893 TGTTAGTTTATACTCCCTCTGGAAA 57.198 36.000 0.00 0.00 41.17 3.13
460 461 8.388656 TGTTAGTTTATACTCCCTCTGGAAAT 57.611 34.615 0.00 0.00 41.17 2.17
461 462 9.496710 TGTTAGTTTATACTCCCTCTGGAAATA 57.503 33.333 0.00 0.00 41.17 1.40
462 463 9.761504 GTTAGTTTATACTCCCTCTGGAAATAC 57.238 37.037 0.00 0.00 41.17 1.89
463 464 9.725206 TTAGTTTATACTCCCTCTGGAAATACT 57.275 33.333 0.00 0.00 41.17 2.12
464 465 8.625467 AGTTTATACTCCCTCTGGAAATACTT 57.375 34.615 0.00 0.00 41.17 2.24
465 466 8.487028 AGTTTATACTCCCTCTGGAAATACTTG 58.513 37.037 0.00 0.00 41.17 3.16
466 467 7.989947 TTATACTCCCTCTGGAAATACTTGT 57.010 36.000 0.00 0.00 41.17 3.16
467 468 4.828072 ACTCCCTCTGGAAATACTTGTC 57.172 45.455 0.00 0.00 41.17 3.18
468 469 4.168101 ACTCCCTCTGGAAATACTTGTCA 58.832 43.478 0.00 0.00 41.17 3.58
469 470 4.020128 ACTCCCTCTGGAAATACTTGTCAC 60.020 45.833 0.00 0.00 41.17 3.67
470 471 3.263425 TCCCTCTGGAAATACTTGTCACC 59.737 47.826 0.00 0.00 37.86 4.02
471 472 3.009033 CCCTCTGGAAATACTTGTCACCA 59.991 47.826 0.00 0.00 0.00 4.17
472 473 4.506625 CCCTCTGGAAATACTTGTCACCAA 60.507 45.833 0.00 0.00 0.00 3.67
473 474 5.070001 CCTCTGGAAATACTTGTCACCAAA 58.930 41.667 0.00 0.00 0.00 3.28
474 475 5.534654 CCTCTGGAAATACTTGTCACCAAAA 59.465 40.000 0.00 0.00 0.00 2.44
475 476 6.209391 CCTCTGGAAATACTTGTCACCAAAAT 59.791 38.462 0.00 0.00 0.00 1.82
476 477 6.980593 TCTGGAAATACTTGTCACCAAAATG 58.019 36.000 0.00 0.00 0.00 2.32
477 478 6.775142 TCTGGAAATACTTGTCACCAAAATGA 59.225 34.615 0.00 0.00 0.00 2.57
478 479 7.286546 TCTGGAAATACTTGTCACCAAAATGAA 59.713 33.333 0.00 0.00 0.00 2.57
479 480 7.961351 TGGAAATACTTGTCACCAAAATGAAT 58.039 30.769 0.00 0.00 0.00 2.57
480 481 9.083422 TGGAAATACTTGTCACCAAAATGAATA 57.917 29.630 0.00 0.00 0.00 1.75
481 482 9.921637 GGAAATACTTGTCACCAAAATGAATAA 57.078 29.630 0.00 0.00 0.00 1.40
484 485 9.927668 AATACTTGTCACCAAAATGAATAAAGG 57.072 29.630 0.00 0.00 0.00 3.11
485 486 6.758254 ACTTGTCACCAAAATGAATAAAGGG 58.242 36.000 0.00 0.00 0.00 3.95
486 487 5.736951 TGTCACCAAAATGAATAAAGGGG 57.263 39.130 0.00 0.00 0.00 4.79
487 488 5.398236 TGTCACCAAAATGAATAAAGGGGA 58.602 37.500 0.00 0.00 0.00 4.81
488 489 6.022315 TGTCACCAAAATGAATAAAGGGGAT 58.978 36.000 0.00 0.00 30.23 3.85
489 490 6.070881 TGTCACCAAAATGAATAAAGGGGATG 60.071 38.462 0.00 0.00 30.23 3.51
490 491 6.022315 TCACCAAAATGAATAAAGGGGATGT 58.978 36.000 0.00 0.00 0.00 3.06
491 492 7.123547 GTCACCAAAATGAATAAAGGGGATGTA 59.876 37.037 0.00 0.00 30.23 2.29
492 493 7.843760 TCACCAAAATGAATAAAGGGGATGTAT 59.156 33.333 0.00 0.00 0.00 2.29
493 494 8.143835 CACCAAAATGAATAAAGGGGATGTATC 58.856 37.037 0.00 0.00 0.00 2.24
494 495 8.067488 ACCAAAATGAATAAAGGGGATGTATCT 58.933 33.333 0.00 0.00 0.00 1.98
495 496 9.586732 CCAAAATGAATAAAGGGGATGTATCTA 57.413 33.333 0.00 0.00 0.00 1.98
500 501 8.742125 TGAATAAAGGGGATGTATCTAGATGT 57.258 34.615 15.79 1.25 0.00 3.06
501 502 9.837681 TGAATAAAGGGGATGTATCTAGATGTA 57.162 33.333 15.79 4.44 0.00 2.29
508 509 9.845214 AGGGGATGTATCTAGATGTATTTTAGT 57.155 33.333 15.79 0.00 0.00 2.24
530 531 9.886132 TTAGTTCTAGATACATCCCTTTTTGTC 57.114 33.333 0.00 0.00 0.00 3.18
531 532 7.339482 AGTTCTAGATACATCCCTTTTTGTCC 58.661 38.462 0.00 0.00 0.00 4.02
532 533 6.884472 TCTAGATACATCCCTTTTTGTCCA 57.116 37.500 0.00 0.00 0.00 4.02
533 534 7.451731 TCTAGATACATCCCTTTTTGTCCAT 57.548 36.000 0.00 0.00 0.00 3.41
534 535 7.872138 TCTAGATACATCCCTTTTTGTCCATT 58.128 34.615 0.00 0.00 0.00 3.16
535 536 8.336235 TCTAGATACATCCCTTTTTGTCCATTT 58.664 33.333 0.00 0.00 0.00 2.32
536 537 7.797121 AGATACATCCCTTTTTGTCCATTTT 57.203 32.000 0.00 0.00 0.00 1.82
537 538 8.893563 AGATACATCCCTTTTTGTCCATTTTA 57.106 30.769 0.00 0.00 0.00 1.52
538 539 9.320295 AGATACATCCCTTTTTGTCCATTTTAA 57.680 29.630 0.00 0.00 0.00 1.52
540 541 9.889128 ATACATCCCTTTTTGTCCATTTTAATG 57.111 29.630 0.00 0.00 36.17 1.90
541 542 7.972301 ACATCCCTTTTTGTCCATTTTAATGA 58.028 30.769 4.07 0.00 38.70 2.57
542 543 7.877612 ACATCCCTTTTTGTCCATTTTAATGAC 59.122 33.333 4.07 2.18 38.70 3.06
543 544 7.366847 TCCCTTTTTGTCCATTTTAATGACA 57.633 32.000 4.07 4.41 38.70 3.58
544 545 7.796054 TCCCTTTTTGTCCATTTTAATGACAA 58.204 30.769 4.07 9.25 38.70 3.18
545 546 7.930865 TCCCTTTTTGTCCATTTTAATGACAAG 59.069 33.333 4.07 2.77 37.53 3.16
546 547 7.714813 CCCTTTTTGTCCATTTTAATGACAAGT 59.285 33.333 4.07 0.00 37.53 3.16
547 548 9.757227 CCTTTTTGTCCATTTTAATGACAAGTA 57.243 29.630 4.07 3.71 37.53 2.24
553 554 9.619316 TGTCCATTTTAATGACAAGTATTTTCG 57.381 29.630 4.07 0.00 38.70 3.46
554 555 9.072294 GTCCATTTTAATGACAAGTATTTTCGG 57.928 33.333 4.07 0.00 38.70 4.30
555 556 9.015367 TCCATTTTAATGACAAGTATTTTCGGA 57.985 29.630 4.07 0.00 38.70 4.55
556 557 9.072294 CCATTTTAATGACAAGTATTTTCGGAC 57.928 33.333 4.07 0.00 38.70 4.79
557 558 8.785101 CATTTTAATGACAAGTATTTTCGGACG 58.215 33.333 0.00 0.00 38.70 4.79
558 559 4.939509 AATGACAAGTATTTTCGGACGG 57.060 40.909 0.00 0.00 0.00 4.79
559 560 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
560 561 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
561 562 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
562 563 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
563 564 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
564 565 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
572 573 0.816373 GGACGGAGGGAGTAGTTGTC 59.184 60.000 0.00 0.00 0.00 3.18
601 602 5.903010 TCCATACCAAATTAGACTAGCAGGA 59.097 40.000 0.00 0.00 0.00 3.86
612 613 9.474313 AATTAGACTAGCAGGATAGATAGAAGG 57.526 37.037 0.00 0.00 32.12 3.46
751 1049 0.893727 ACCTTGCTAAAGTTGCCCCG 60.894 55.000 0.00 0.00 0.00 5.73
752 1050 0.608035 CCTTGCTAAAGTTGCCCCGA 60.608 55.000 0.00 0.00 0.00 5.14
764 1062 1.745489 GCCCCGAGGTCATGTGAAC 60.745 63.158 0.00 0.00 34.57 3.18
787 1085 6.552008 ACTCCACTAAATTCCCTCATCAAAA 58.448 36.000 0.00 0.00 0.00 2.44
866 1164 3.316308 CCACTTTCAAACCAGAAGTGAGG 59.684 47.826 14.93 0.00 32.93 3.86
1297 1601 4.681978 AGGGCGTCTGGTTCGTGC 62.682 66.667 0.00 0.00 0.00 5.34
1502 1831 6.337356 TCCAATCCAACAAAAGAGAAACAAC 58.663 36.000 0.00 0.00 0.00 3.32
1526 1859 1.664659 CGGACGAGTGACGAATCTAGT 59.335 52.381 0.00 0.00 45.77 2.57
1527 1860 2.862536 CGGACGAGTGACGAATCTAGTA 59.137 50.000 0.00 0.00 45.77 1.82
1528 1861 3.060406 CGGACGAGTGACGAATCTAGTAG 60.060 52.174 0.00 0.00 45.77 2.57
1558 1891 3.011583 GGCGCTGCCGTATTGTAC 58.988 61.111 7.64 0.00 39.62 2.90
1808 2144 0.457851 CACAGGTGGTCGAGATCTCC 59.542 60.000 17.13 4.54 0.00 3.71
2419 2785 2.205074 CAAGTACGCTTAGCTGGATGG 58.795 52.381 1.76 0.00 32.87 3.51
2468 2834 6.182507 TGTTCTCATACCTGTAACACCTTT 57.817 37.500 0.00 0.00 30.10 3.11
2564 2937 7.014422 GGTATAAACCACACTAGTATCTCTGCT 59.986 40.741 0.00 0.00 45.98 4.24
2712 3102 9.653287 CATACTTTGATGGAAGTCAGTAGTTTA 57.347 33.333 0.00 0.00 40.24 2.01
2883 3274 5.773176 TCACACTGGTCAGTTGAGTAAGATA 59.227 40.000 0.20 0.00 40.20 1.98
2933 3324 3.676291 GAGAATCCTAGATGTCTGGGC 57.324 52.381 7.49 0.00 43.51 5.36
2934 3325 1.967066 AGAATCCTAGATGTCTGGGCG 59.033 52.381 7.49 0.00 43.51 6.13
2935 3326 1.689273 GAATCCTAGATGTCTGGGCGT 59.311 52.381 7.49 0.00 43.51 5.68
2936 3327 1.794714 ATCCTAGATGTCTGGGCGTT 58.205 50.000 7.49 0.00 43.51 4.84
2937 3328 0.824109 TCCTAGATGTCTGGGCGTTG 59.176 55.000 7.49 0.00 43.51 4.10
2938 3329 0.179073 CCTAGATGTCTGGGCGTTGG 60.179 60.000 0.00 0.00 37.80 3.77
2939 3330 0.824109 CTAGATGTCTGGGCGTTGGA 59.176 55.000 0.00 0.00 0.00 3.53
2940 3331 0.824109 TAGATGTCTGGGCGTTGGAG 59.176 55.000 0.00 0.00 0.00 3.86
2941 3332 0.904865 AGATGTCTGGGCGTTGGAGA 60.905 55.000 0.00 0.00 0.00 3.71
2942 3333 0.179000 GATGTCTGGGCGTTGGAGAT 59.821 55.000 0.00 0.00 0.00 2.75
2943 3334 0.107508 ATGTCTGGGCGTTGGAGATG 60.108 55.000 0.00 0.00 0.00 2.90
2944 3335 1.191489 TGTCTGGGCGTTGGAGATGA 61.191 55.000 0.00 0.00 0.00 2.92
2945 3336 0.179000 GTCTGGGCGTTGGAGATGAT 59.821 55.000 0.00 0.00 0.00 2.45
2946 3337 0.178767 TCTGGGCGTTGGAGATGATG 59.821 55.000 0.00 0.00 0.00 3.07
2947 3338 0.816825 CTGGGCGTTGGAGATGATGG 60.817 60.000 0.00 0.00 0.00 3.51
2948 3339 1.271127 TGGGCGTTGGAGATGATGGA 61.271 55.000 0.00 0.00 0.00 3.41
2949 3340 0.109342 GGGCGTTGGAGATGATGGAT 59.891 55.000 0.00 0.00 0.00 3.41
2950 3341 1.517242 GGCGTTGGAGATGATGGATC 58.483 55.000 0.00 0.00 0.00 3.36
2951 3342 1.202687 GGCGTTGGAGATGATGGATCA 60.203 52.381 0.00 0.00 41.70 2.92
2952 3343 1.869767 GCGTTGGAGATGATGGATCAC 59.130 52.381 0.00 0.00 40.03 3.06
2953 3344 2.484417 GCGTTGGAGATGATGGATCACT 60.484 50.000 0.00 0.00 40.03 3.41
2954 3345 3.388308 CGTTGGAGATGATGGATCACTC 58.612 50.000 0.00 9.16 40.03 3.51
2955 3346 3.737850 GTTGGAGATGATGGATCACTCC 58.262 50.000 20.37 20.37 45.26 3.85
2956 3347 3.341318 TGGAGATGATGGATCACTCCT 57.659 47.619 23.88 11.15 45.26 3.69
2957 3348 2.970640 TGGAGATGATGGATCACTCCTG 59.029 50.000 23.88 0.00 45.26 3.86
2958 3349 3.237746 GGAGATGATGGATCACTCCTGA 58.762 50.000 20.12 0.00 43.68 3.86
2959 3350 3.645212 GGAGATGATGGATCACTCCTGAA 59.355 47.826 20.12 0.00 43.68 3.02
2960 3351 4.262549 GGAGATGATGGATCACTCCTGAAG 60.263 50.000 20.12 0.00 43.68 3.02
2961 3352 4.554683 AGATGATGGATCACTCCTGAAGA 58.445 43.478 0.00 0.00 42.59 2.87
2962 3353 5.156649 AGATGATGGATCACTCCTGAAGAT 58.843 41.667 0.00 0.00 42.59 2.40
2963 3354 4.952071 TGATGGATCACTCCTGAAGATC 57.048 45.455 0.00 0.00 42.59 2.75
2964 3355 4.554683 TGATGGATCACTCCTGAAGATCT 58.445 43.478 0.00 0.00 42.59 2.75
2965 3356 4.967442 TGATGGATCACTCCTGAAGATCTT 59.033 41.667 7.95 7.95 42.59 2.40
2966 3357 5.427806 TGATGGATCACTCCTGAAGATCTTT 59.572 40.000 9.87 0.00 42.59 2.52
2967 3358 5.350504 TGGATCACTCCTGAAGATCTTTC 57.649 43.478 9.87 3.85 42.59 2.62
2968 3359 4.163078 TGGATCACTCCTGAAGATCTTTCC 59.837 45.833 9.87 9.49 42.59 3.13
2969 3360 4.408596 GGATCACTCCTGAAGATCTTTCCT 59.591 45.833 9.87 0.00 38.51 3.36
2970 3361 4.815533 TCACTCCTGAAGATCTTTCCTG 57.184 45.455 9.87 1.99 0.00 3.86
2971 3362 4.163427 TCACTCCTGAAGATCTTTCCTGT 58.837 43.478 9.87 3.19 0.00 4.00
2972 3363 4.221703 TCACTCCTGAAGATCTTTCCTGTC 59.778 45.833 9.87 0.00 0.00 3.51
2973 3364 3.194542 ACTCCTGAAGATCTTTCCTGTCG 59.805 47.826 9.87 0.00 0.00 4.35
2974 3365 3.165875 TCCTGAAGATCTTTCCTGTCGT 58.834 45.455 9.87 0.00 0.00 4.34
2975 3366 3.578716 TCCTGAAGATCTTTCCTGTCGTT 59.421 43.478 9.87 0.00 0.00 3.85
2976 3367 3.929610 CCTGAAGATCTTTCCTGTCGTTC 59.070 47.826 9.87 0.00 0.00 3.95
2977 3368 4.322349 CCTGAAGATCTTTCCTGTCGTTCT 60.322 45.833 9.87 0.00 0.00 3.01
2978 3369 4.810790 TGAAGATCTTTCCTGTCGTTCTC 58.189 43.478 9.87 0.00 0.00 2.87
2979 3370 3.878160 AGATCTTTCCTGTCGTTCTCC 57.122 47.619 0.00 0.00 0.00 3.71
2980 3371 3.436243 AGATCTTTCCTGTCGTTCTCCT 58.564 45.455 0.00 0.00 0.00 3.69
2981 3372 3.835395 AGATCTTTCCTGTCGTTCTCCTT 59.165 43.478 0.00 0.00 0.00 3.36
2982 3373 3.662247 TCTTTCCTGTCGTTCTCCTTC 57.338 47.619 0.00 0.00 0.00 3.46
2983 3374 2.030185 TCTTTCCTGTCGTTCTCCTTCG 60.030 50.000 0.00 0.00 0.00 3.79
2984 3375 1.325355 TTCCTGTCGTTCTCCTTCGT 58.675 50.000 0.00 0.00 0.00 3.85
2985 3376 1.325355 TCCTGTCGTTCTCCTTCGTT 58.675 50.000 0.00 0.00 0.00 3.85
2986 3377 1.684983 TCCTGTCGTTCTCCTTCGTTT 59.315 47.619 0.00 0.00 0.00 3.60
2987 3378 2.059541 CCTGTCGTTCTCCTTCGTTTC 58.940 52.381 0.00 0.00 0.00 2.78
2988 3379 2.288273 CCTGTCGTTCTCCTTCGTTTCT 60.288 50.000 0.00 0.00 0.00 2.52
2989 3380 2.981140 CTGTCGTTCTCCTTCGTTTCTC 59.019 50.000 0.00 0.00 0.00 2.87
2990 3381 2.359848 TGTCGTTCTCCTTCGTTTCTCA 59.640 45.455 0.00 0.00 0.00 3.27
2991 3382 3.005472 TGTCGTTCTCCTTCGTTTCTCAT 59.995 43.478 0.00 0.00 0.00 2.90
2992 3383 3.988517 GTCGTTCTCCTTCGTTTCTCATT 59.011 43.478 0.00 0.00 0.00 2.57
2993 3384 4.448060 GTCGTTCTCCTTCGTTTCTCATTT 59.552 41.667 0.00 0.00 0.00 2.32
2994 3385 4.684703 TCGTTCTCCTTCGTTTCTCATTTC 59.315 41.667 0.00 0.00 0.00 2.17
2995 3386 4.686554 CGTTCTCCTTCGTTTCTCATTTCT 59.313 41.667 0.00 0.00 0.00 2.52
2996 3387 5.388890 CGTTCTCCTTCGTTTCTCATTTCTG 60.389 44.000 0.00 0.00 0.00 3.02
2997 3388 5.215252 TCTCCTTCGTTTCTCATTTCTGT 57.785 39.130 0.00 0.00 0.00 3.41
2998 3389 5.611374 TCTCCTTCGTTTCTCATTTCTGTT 58.389 37.500 0.00 0.00 0.00 3.16
2999 3390 5.466728 TCTCCTTCGTTTCTCATTTCTGTTG 59.533 40.000 0.00 0.00 0.00 3.33
3000 3391 4.515191 TCCTTCGTTTCTCATTTCTGTTGG 59.485 41.667 0.00 0.00 0.00 3.77
3001 3392 4.275936 CCTTCGTTTCTCATTTCTGTTGGT 59.724 41.667 0.00 0.00 0.00 3.67
3002 3393 4.811555 TCGTTTCTCATTTCTGTTGGTG 57.188 40.909 0.00 0.00 0.00 4.17
3003 3394 3.003275 TCGTTTCTCATTTCTGTTGGTGC 59.997 43.478 0.00 0.00 0.00 5.01
3004 3395 3.003689 CGTTTCTCATTTCTGTTGGTGCT 59.996 43.478 0.00 0.00 0.00 4.40
3005 3396 4.540824 GTTTCTCATTTCTGTTGGTGCTC 58.459 43.478 0.00 0.00 0.00 4.26
3006 3397 3.777106 TCTCATTTCTGTTGGTGCTCT 57.223 42.857 0.00 0.00 0.00 4.09
3007 3398 3.405831 TCTCATTTCTGTTGGTGCTCTG 58.594 45.455 0.00 0.00 0.00 3.35
3008 3399 3.144506 CTCATTTCTGTTGGTGCTCTGT 58.855 45.455 0.00 0.00 0.00 3.41
3009 3400 4.040339 TCTCATTTCTGTTGGTGCTCTGTA 59.960 41.667 0.00 0.00 0.00 2.74
3010 3401 4.713553 TCATTTCTGTTGGTGCTCTGTAA 58.286 39.130 0.00 0.00 0.00 2.41
3011 3402 5.316167 TCATTTCTGTTGGTGCTCTGTAAT 58.684 37.500 0.00 0.00 0.00 1.89
3012 3403 6.472016 TCATTTCTGTTGGTGCTCTGTAATA 58.528 36.000 0.00 0.00 0.00 0.98
3013 3404 6.939730 TCATTTCTGTTGGTGCTCTGTAATAA 59.060 34.615 0.00 0.00 0.00 1.40
3014 3405 6.801539 TTTCTGTTGGTGCTCTGTAATAAG 57.198 37.500 0.00 0.00 0.00 1.73
3015 3406 5.483685 TCTGTTGGTGCTCTGTAATAAGT 57.516 39.130 0.00 0.00 0.00 2.24
3016 3407 6.599356 TCTGTTGGTGCTCTGTAATAAGTA 57.401 37.500 0.00 0.00 0.00 2.24
3017 3408 6.999950 TCTGTTGGTGCTCTGTAATAAGTAA 58.000 36.000 0.00 0.00 0.00 2.24
3018 3409 7.446769 TCTGTTGGTGCTCTGTAATAAGTAAA 58.553 34.615 0.00 0.00 0.00 2.01
3019 3410 7.934665 TCTGTTGGTGCTCTGTAATAAGTAAAA 59.065 33.333 0.00 0.00 0.00 1.52
3020 3411 8.094798 TGTTGGTGCTCTGTAATAAGTAAAAG 57.905 34.615 0.00 0.00 0.00 2.27
3021 3412 7.934665 TGTTGGTGCTCTGTAATAAGTAAAAGA 59.065 33.333 0.00 0.00 0.00 2.52
3022 3413 7.900782 TGGTGCTCTGTAATAAGTAAAAGAC 57.099 36.000 0.00 0.00 0.00 3.01
3023 3414 7.676947 TGGTGCTCTGTAATAAGTAAAAGACT 58.323 34.615 0.00 0.00 41.56 3.24
3024 3415 7.817962 TGGTGCTCTGTAATAAGTAAAAGACTC 59.182 37.037 0.00 0.00 37.44 3.36
3025 3416 7.278203 GGTGCTCTGTAATAAGTAAAAGACTCC 59.722 40.741 0.00 0.00 37.44 3.85
3026 3417 7.009357 GTGCTCTGTAATAAGTAAAAGACTCCG 59.991 40.741 0.00 0.00 37.44 4.63
3027 3418 7.034397 GCTCTGTAATAAGTAAAAGACTCCGT 58.966 38.462 0.00 0.00 37.44 4.69
3028 3419 7.544915 GCTCTGTAATAAGTAAAAGACTCCGTT 59.455 37.037 0.00 0.00 37.44 4.44
3029 3420 9.420551 CTCTGTAATAAGTAAAAGACTCCGTTT 57.579 33.333 0.00 0.00 37.44 3.60
3033 3424 9.911980 GTAATAAGTAAAAGACTCCGTTTATGC 57.088 33.333 0.00 0.00 37.44 3.14
3034 3425 8.788325 AATAAGTAAAAGACTCCGTTTATGCT 57.212 30.769 0.00 0.00 37.44 3.79
3035 3426 8.788325 ATAAGTAAAAGACTCCGTTTATGCTT 57.212 30.769 0.00 0.00 37.44 3.91
3036 3427 6.723131 AGTAAAAGACTCCGTTTATGCTTC 57.277 37.500 0.00 0.00 29.95 3.86
3037 3428 6.465084 AGTAAAAGACTCCGTTTATGCTTCT 58.535 36.000 0.00 0.00 29.95 2.85
3038 3429 7.609056 AGTAAAAGACTCCGTTTATGCTTCTA 58.391 34.615 0.00 0.00 29.95 2.10
3039 3430 6.969828 AAAAGACTCCGTTTATGCTTCTAG 57.030 37.500 0.00 0.00 0.00 2.43
3040 3431 4.048241 AGACTCCGTTTATGCTTCTAGC 57.952 45.455 0.00 0.00 42.82 3.42
3041 3432 3.124560 GACTCCGTTTATGCTTCTAGCC 58.875 50.000 0.00 0.00 41.51 3.93
3042 3433 2.766828 ACTCCGTTTATGCTTCTAGCCT 59.233 45.455 0.00 0.00 41.51 4.58
3043 3434 3.181474 ACTCCGTTTATGCTTCTAGCCTC 60.181 47.826 0.00 0.00 41.51 4.70
3044 3435 3.031736 TCCGTTTATGCTTCTAGCCTCT 58.968 45.455 0.00 0.00 41.51 3.69
3045 3436 4.212716 TCCGTTTATGCTTCTAGCCTCTA 58.787 43.478 0.00 0.00 41.51 2.43
3046 3437 4.647853 TCCGTTTATGCTTCTAGCCTCTAA 59.352 41.667 0.00 0.00 41.51 2.10
3047 3438 5.128171 TCCGTTTATGCTTCTAGCCTCTAAA 59.872 40.000 0.00 0.00 41.51 1.85
3048 3439 5.234543 CCGTTTATGCTTCTAGCCTCTAAAC 59.765 44.000 13.16 13.16 41.51 2.01
3049 3440 6.043411 CGTTTATGCTTCTAGCCTCTAAACT 58.957 40.000 17.10 0.00 41.51 2.66
3050 3441 6.535508 CGTTTATGCTTCTAGCCTCTAAACTT 59.464 38.462 17.10 0.00 41.51 2.66
3051 3442 7.064728 CGTTTATGCTTCTAGCCTCTAAACTTT 59.935 37.037 17.10 0.00 41.51 2.66
3052 3443 9.379791 GTTTATGCTTCTAGCCTCTAAACTTTA 57.620 33.333 14.60 0.00 41.51 1.85
3057 3448 9.547753 TGCTTCTAGCCTCTAAACTTTATATTG 57.452 33.333 0.00 0.00 41.51 1.90
3058 3449 8.994170 GCTTCTAGCCTCTAAACTTTATATTGG 58.006 37.037 0.00 0.00 34.48 3.16
3059 3450 8.904099 TTCTAGCCTCTAAACTTTATATTGGC 57.096 34.615 0.00 0.00 38.24 4.52
3061 3452 8.714906 TCTAGCCTCTAAACTTTATATTGGCTT 58.285 33.333 7.99 0.00 44.78 4.35
3062 3453 9.343539 CTAGCCTCTAAACTTTATATTGGCTTT 57.656 33.333 7.99 0.00 44.78 3.51
3064 3455 9.343539 AGCCTCTAAACTTTATATTGGCTTTAG 57.656 33.333 0.00 0.00 44.78 1.85
3065 3456 8.568794 GCCTCTAAACTTTATATTGGCTTTAGG 58.431 37.037 0.00 0.00 35.44 2.69
3066 3457 8.568794 CCTCTAAACTTTATATTGGCTTTAGGC 58.431 37.037 0.00 0.00 41.50 3.93
3067 3458 9.343539 CTCTAAACTTTATATTGGCTTTAGGCT 57.656 33.333 4.87 0.00 41.69 4.58
3068 3459 9.695155 TCTAAACTTTATATTGGCTTTAGGCTT 57.305 29.630 0.00 0.00 41.69 4.35
3074 3465 9.612620 CTTTATATTGGCTTTAGGCTTTTATCG 57.387 33.333 0.00 0.00 41.69 2.92
3075 3466 8.685838 TTATATTGGCTTTAGGCTTTTATCGT 57.314 30.769 0.00 0.00 41.69 3.73
3076 3467 5.914898 ATTGGCTTTAGGCTTTTATCGTT 57.085 34.783 0.00 0.00 41.69 3.85
3077 3468 4.695217 TGGCTTTAGGCTTTTATCGTTG 57.305 40.909 0.00 0.00 41.69 4.10
3078 3469 4.328536 TGGCTTTAGGCTTTTATCGTTGA 58.671 39.130 0.00 0.00 41.69 3.18
3079 3470 4.947388 TGGCTTTAGGCTTTTATCGTTGAT 59.053 37.500 0.00 0.00 41.69 2.57
3080 3471 5.417580 TGGCTTTAGGCTTTTATCGTTGATT 59.582 36.000 0.00 0.00 41.69 2.57
3081 3472 6.071616 TGGCTTTAGGCTTTTATCGTTGATTT 60.072 34.615 0.00 0.00 41.69 2.17
3082 3473 7.121463 TGGCTTTAGGCTTTTATCGTTGATTTA 59.879 33.333 0.00 0.00 41.69 1.40
3083 3474 7.644157 GGCTTTAGGCTTTTATCGTTGATTTAG 59.356 37.037 0.00 0.00 41.46 1.85
3084 3475 7.165977 GCTTTAGGCTTTTATCGTTGATTTAGC 59.834 37.037 0.00 0.00 38.06 3.09
3085 3476 7.859325 TTAGGCTTTTATCGTTGATTTAGCT 57.141 32.000 0.00 0.00 0.00 3.32
3086 3477 6.124088 AGGCTTTTATCGTTGATTTAGCTG 57.876 37.500 0.00 0.00 0.00 4.24
3087 3478 4.735338 GGCTTTTATCGTTGATTTAGCTGC 59.265 41.667 0.00 0.00 0.00 5.25
3088 3479 5.449177 GGCTTTTATCGTTGATTTAGCTGCT 60.449 40.000 7.57 7.57 0.00 4.24
3089 3480 5.678919 GCTTTTATCGTTGATTTAGCTGCTC 59.321 40.000 4.91 0.00 0.00 4.26
3090 3481 6.457528 GCTTTTATCGTTGATTTAGCTGCTCT 60.458 38.462 4.91 0.00 0.00 4.09
3091 3482 5.973651 TTATCGTTGATTTAGCTGCTCTG 57.026 39.130 4.91 0.00 0.00 3.35
3092 3483 3.319137 TCGTTGATTTAGCTGCTCTGT 57.681 42.857 4.91 0.00 0.00 3.41
3093 3484 4.450082 TCGTTGATTTAGCTGCTCTGTA 57.550 40.909 4.91 0.00 0.00 2.74
3094 3485 4.424626 TCGTTGATTTAGCTGCTCTGTAG 58.575 43.478 4.91 0.00 0.00 2.74
3095 3486 4.082190 TCGTTGATTTAGCTGCTCTGTAGT 60.082 41.667 4.91 0.00 0.00 2.73
3096 3487 5.124936 TCGTTGATTTAGCTGCTCTGTAGTA 59.875 40.000 4.91 0.00 0.00 1.82
3097 3488 5.457148 CGTTGATTTAGCTGCTCTGTAGTAG 59.543 44.000 4.91 0.00 38.40 2.57
3098 3489 6.334202 GTTGATTTAGCTGCTCTGTAGTAGT 58.666 40.000 4.91 0.00 37.72 2.73
3099 3490 6.137794 TGATTTAGCTGCTCTGTAGTAGTC 57.862 41.667 4.91 0.00 37.72 2.59
3100 3491 4.617808 TTTAGCTGCTCTGTAGTAGTCG 57.382 45.455 4.91 0.00 37.72 4.18
3101 3492 1.384525 AGCTGCTCTGTAGTAGTCGG 58.615 55.000 0.00 0.00 37.72 4.79
3102 3493 1.065345 AGCTGCTCTGTAGTAGTCGGA 60.065 52.381 0.00 0.00 37.72 4.55
3103 3494 1.950909 GCTGCTCTGTAGTAGTCGGAT 59.049 52.381 0.00 0.00 37.72 4.18
3104 3495 2.287308 GCTGCTCTGTAGTAGTCGGATG 60.287 54.545 0.00 0.00 37.72 3.51
3105 3496 3.206964 CTGCTCTGTAGTAGTCGGATGA 58.793 50.000 0.00 0.00 31.33 2.92
3106 3497 3.818210 CTGCTCTGTAGTAGTCGGATGAT 59.182 47.826 0.00 0.00 31.33 2.45
3107 3498 3.565902 TGCTCTGTAGTAGTCGGATGATG 59.434 47.826 0.00 0.00 0.00 3.07
3108 3499 3.610585 GCTCTGTAGTAGTCGGATGATGC 60.611 52.174 0.00 0.00 0.00 3.91
3109 3500 3.818210 CTCTGTAGTAGTCGGATGATGCT 59.182 47.826 0.00 0.00 0.00 3.79
3110 3501 4.207955 TCTGTAGTAGTCGGATGATGCTT 58.792 43.478 0.00 0.00 0.00 3.91
3111 3502 4.645136 TCTGTAGTAGTCGGATGATGCTTT 59.355 41.667 0.00 0.00 0.00 3.51
3112 3503 4.682787 TGTAGTAGTCGGATGATGCTTTG 58.317 43.478 0.00 0.00 0.00 2.77
3113 3504 3.895232 AGTAGTCGGATGATGCTTTGT 57.105 42.857 0.00 0.00 0.00 2.83
3114 3505 5.358725 TGTAGTAGTCGGATGATGCTTTGTA 59.641 40.000 0.00 0.00 0.00 2.41
3115 3506 5.339008 AGTAGTCGGATGATGCTTTGTAA 57.661 39.130 0.00 0.00 0.00 2.41
3116 3507 5.730550 AGTAGTCGGATGATGCTTTGTAAA 58.269 37.500 0.00 0.00 0.00 2.01
3117 3508 6.170506 AGTAGTCGGATGATGCTTTGTAAAA 58.829 36.000 0.00 0.00 0.00 1.52
3118 3509 5.296813 AGTCGGATGATGCTTTGTAAAAC 57.703 39.130 0.00 0.00 0.00 2.43
3119 3510 5.003804 AGTCGGATGATGCTTTGTAAAACT 58.996 37.500 0.00 0.00 0.00 2.66
3120 3511 5.088739 GTCGGATGATGCTTTGTAAAACTG 58.911 41.667 0.00 0.00 0.00 3.16
3121 3512 5.000591 TCGGATGATGCTTTGTAAAACTGA 58.999 37.500 0.00 0.00 0.00 3.41
3122 3513 5.647658 TCGGATGATGCTTTGTAAAACTGAT 59.352 36.000 0.00 0.00 0.00 2.90
3123 3514 5.740569 CGGATGATGCTTTGTAAAACTGATG 59.259 40.000 0.00 0.00 0.00 3.07
3124 3515 6.623549 CGGATGATGCTTTGTAAAACTGATGT 60.624 38.462 0.00 0.00 0.00 3.06
3125 3516 6.749118 GGATGATGCTTTGTAAAACTGATGTC 59.251 38.462 0.00 0.00 0.00 3.06
3126 3517 6.882610 TGATGCTTTGTAAAACTGATGTCT 57.117 33.333 0.00 0.00 0.00 3.41
3127 3518 6.671190 TGATGCTTTGTAAAACTGATGTCTG 58.329 36.000 0.00 0.00 0.00 3.51
3128 3519 5.437289 TGCTTTGTAAAACTGATGTCTGG 57.563 39.130 0.00 0.00 0.00 3.86
3129 3520 4.887071 TGCTTTGTAAAACTGATGTCTGGT 59.113 37.500 0.00 0.00 0.00 4.00
3130 3521 5.215160 GCTTTGTAAAACTGATGTCTGGTG 58.785 41.667 0.00 0.00 0.00 4.17
3131 3522 4.829064 TTGTAAAACTGATGTCTGGTGC 57.171 40.909 0.00 0.00 0.00 5.01
3132 3523 4.085357 TGTAAAACTGATGTCTGGTGCT 57.915 40.909 0.00 0.00 0.00 4.40
3133 3524 3.814842 TGTAAAACTGATGTCTGGTGCTG 59.185 43.478 0.00 0.00 0.00 4.41
3134 3525 2.645838 AAACTGATGTCTGGTGCTGT 57.354 45.000 0.00 0.00 0.00 4.40
3135 3526 2.175878 AACTGATGTCTGGTGCTGTC 57.824 50.000 0.00 0.00 0.00 3.51
3136 3527 1.346062 ACTGATGTCTGGTGCTGTCT 58.654 50.000 0.00 0.00 0.00 3.41
3137 3528 1.001746 ACTGATGTCTGGTGCTGTCTG 59.998 52.381 0.00 0.00 0.00 3.51
3138 3529 0.321034 TGATGTCTGGTGCTGTCTGC 60.321 55.000 0.00 0.00 43.25 4.26
3139 3530 0.036577 GATGTCTGGTGCTGTCTGCT 60.037 55.000 3.20 0.00 43.37 4.24
3140 3531 0.399454 ATGTCTGGTGCTGTCTGCTT 59.601 50.000 3.20 0.00 43.37 3.91
3141 3532 0.250038 TGTCTGGTGCTGTCTGCTTC 60.250 55.000 3.20 0.00 43.37 3.86
3142 3533 0.250038 GTCTGGTGCTGTCTGCTTCA 60.250 55.000 3.20 1.26 43.37 3.02
3143 3534 0.689055 TCTGGTGCTGTCTGCTTCAT 59.311 50.000 3.20 0.00 43.37 2.57
3144 3535 1.072806 TCTGGTGCTGTCTGCTTCATT 59.927 47.619 3.20 0.00 43.37 2.57
3145 3536 1.467734 CTGGTGCTGTCTGCTTCATTC 59.532 52.381 3.20 0.00 43.37 2.67
3146 3537 1.072806 TGGTGCTGTCTGCTTCATTCT 59.927 47.619 3.20 0.00 43.37 2.40
3147 3538 2.302733 TGGTGCTGTCTGCTTCATTCTA 59.697 45.455 3.20 0.00 43.37 2.10
3148 3539 3.054875 TGGTGCTGTCTGCTTCATTCTAT 60.055 43.478 3.20 0.00 43.37 1.98
3149 3540 4.162131 TGGTGCTGTCTGCTTCATTCTATA 59.838 41.667 3.20 0.00 43.37 1.31
3150 3541 5.118990 GGTGCTGTCTGCTTCATTCTATAA 58.881 41.667 3.20 0.00 43.37 0.98
3151 3542 5.586243 GGTGCTGTCTGCTTCATTCTATAAA 59.414 40.000 3.20 0.00 43.37 1.40
3152 3543 6.094048 GGTGCTGTCTGCTTCATTCTATAAAA 59.906 38.462 3.20 0.00 43.37 1.52
3153 3544 7.201767 GGTGCTGTCTGCTTCATTCTATAAAAT 60.202 37.037 3.20 0.00 43.37 1.82
3154 3545 7.642978 GTGCTGTCTGCTTCATTCTATAAAATG 59.357 37.037 3.20 0.00 43.37 2.32
3155 3546 7.137426 GCTGTCTGCTTCATTCTATAAAATGG 58.863 38.462 0.00 0.00 36.73 3.16
3156 3547 7.572523 TGTCTGCTTCATTCTATAAAATGGG 57.427 36.000 0.00 0.00 37.27 4.00
3157 3548 6.547141 TGTCTGCTTCATTCTATAAAATGGGG 59.453 38.462 0.00 0.00 37.27 4.96
3158 3549 5.536161 TCTGCTTCATTCTATAAAATGGGGC 59.464 40.000 0.00 4.91 37.27 5.80
3159 3550 5.207354 TGCTTCATTCTATAAAATGGGGCA 58.793 37.500 12.27 12.27 39.57 5.36
3160 3551 5.302568 TGCTTCATTCTATAAAATGGGGCAG 59.697 40.000 12.27 1.93 38.38 4.85
3161 3552 5.279156 GCTTCATTCTATAAAATGGGGCAGG 60.279 44.000 0.00 0.00 37.27 4.85
3162 3553 4.739793 TCATTCTATAAAATGGGGCAGGG 58.260 43.478 0.00 0.00 37.27 4.45
3163 3554 3.611025 TTCTATAAAATGGGGCAGGGG 57.389 47.619 0.00 0.00 0.00 4.79
3164 3555 1.786441 TCTATAAAATGGGGCAGGGGG 59.214 52.381 0.00 0.00 0.00 5.40
3182 3573 4.943373 GGCAACCCCTTTCCTTCA 57.057 55.556 0.00 0.00 0.00 3.02
3183 3574 3.141409 GGCAACCCCTTTCCTTCAA 57.859 52.632 0.00 0.00 0.00 2.69
3184 3575 1.419381 GGCAACCCCTTTCCTTCAAA 58.581 50.000 0.00 0.00 0.00 2.69
3185 3576 1.765904 GGCAACCCCTTTCCTTCAAAA 59.234 47.619 0.00 0.00 0.00 2.44
3186 3577 2.171659 GGCAACCCCTTTCCTTCAAAAA 59.828 45.455 0.00 0.00 0.00 1.94
3281 3672 6.349280 CCAAATTAATCAGACGACACCAATGT 60.349 38.462 0.00 0.00 43.71 2.71
3342 3733 4.100035 CCCAGCTATCTGTCACTATTCACA 59.900 45.833 0.00 0.00 38.66 3.58
3490 3884 5.851177 AGTTTTTAGAATGTTTGACGATGCG 59.149 36.000 0.00 0.00 0.00 4.73
3494 3888 3.009723 AGAATGTTTGACGATGCGGAAT 58.990 40.909 0.00 0.00 0.00 3.01
3517 3911 2.548480 GCAACTGTTGGAACTGGAGTAC 59.452 50.000 21.01 0.00 32.82 2.73
3518 3912 3.744530 GCAACTGTTGGAACTGGAGTACT 60.745 47.826 21.01 0.00 32.82 2.73
3519 3913 4.058817 CAACTGTTGGAACTGGAGTACTC 58.941 47.826 14.87 14.87 32.82 2.59
3528 3922 4.256462 GGAGTACTCCCTCCGTCC 57.744 66.667 28.87 4.17 43.94 4.79
3529 3923 1.823041 GGAGTACTCCCTCCGTCCG 60.823 68.421 28.87 0.00 43.94 4.79
3530 3924 1.222936 GAGTACTCCCTCCGTCCGA 59.777 63.158 12.13 0.00 0.00 4.55
3531 3925 0.393537 GAGTACTCCCTCCGTCCGAA 60.394 60.000 12.13 0.00 0.00 4.30
3532 3926 0.258194 AGTACTCCCTCCGTCCGAAT 59.742 55.000 0.00 0.00 0.00 3.34
3533 3927 1.492176 AGTACTCCCTCCGTCCGAATA 59.508 52.381 0.00 0.00 0.00 1.75
3534 3928 2.107901 AGTACTCCCTCCGTCCGAATAT 59.892 50.000 0.00 0.00 0.00 1.28
3535 3929 2.965671 ACTCCCTCCGTCCGAATATA 57.034 50.000 0.00 0.00 0.00 0.86
3536 3930 2.512705 ACTCCCTCCGTCCGAATATAC 58.487 52.381 0.00 0.00 0.00 1.47
3537 3931 2.107901 ACTCCCTCCGTCCGAATATACT 59.892 50.000 0.00 0.00 0.00 2.12
3538 3932 3.155501 CTCCCTCCGTCCGAATATACTT 58.844 50.000 0.00 0.00 0.00 2.24
3539 3933 2.889045 TCCCTCCGTCCGAATATACTTG 59.111 50.000 0.00 0.00 0.00 3.16
3540 3934 2.626743 CCCTCCGTCCGAATATACTTGT 59.373 50.000 0.00 0.00 0.00 3.16
3541 3935 3.305199 CCCTCCGTCCGAATATACTTGTC 60.305 52.174 0.00 0.00 0.00 3.18
3542 3936 3.317149 CCTCCGTCCGAATATACTTGTCA 59.683 47.826 0.00 0.00 0.00 3.58
3543 3937 4.537965 CTCCGTCCGAATATACTTGTCAG 58.462 47.826 0.00 0.00 0.00 3.51
3544 3938 4.201657 TCCGTCCGAATATACTTGTCAGA 58.798 43.478 0.00 0.00 0.00 3.27
3545 3939 4.275196 TCCGTCCGAATATACTTGTCAGAG 59.725 45.833 0.00 0.00 0.00 3.35
3546 3940 4.275196 CCGTCCGAATATACTTGTCAGAGA 59.725 45.833 0.00 0.00 0.00 3.10
3547 3941 5.220989 CCGTCCGAATATACTTGTCAGAGAA 60.221 44.000 0.00 0.00 0.00 2.87
3548 3942 6.263344 CGTCCGAATATACTTGTCAGAGAAA 58.737 40.000 0.00 0.00 0.00 2.52
3549 3943 6.918569 CGTCCGAATATACTTGTCAGAGAAAT 59.081 38.462 0.00 0.00 0.00 2.17
3550 3944 7.096436 CGTCCGAATATACTTGTCAGAGAAATG 60.096 40.741 0.00 0.00 0.00 2.32
3551 3945 7.169982 GTCCGAATATACTTGTCAGAGAAATGG 59.830 40.741 0.00 0.00 0.00 3.16
3552 3946 7.069455 TCCGAATATACTTGTCAGAGAAATGGA 59.931 37.037 0.00 0.00 0.00 3.41
3553 3947 7.875041 CCGAATATACTTGTCAGAGAAATGGAT 59.125 37.037 0.00 0.00 0.00 3.41
3554 3948 9.914131 CGAATATACTTGTCAGAGAAATGGATA 57.086 33.333 0.00 0.00 0.00 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 6.319405 TCTTTGATTTGCTCTGCTGCATATAA 59.681 34.615 1.31 0.00 42.96 0.98
22 23 6.928979 TGAAGGTACATTTTTCGTCTTTGA 57.071 33.333 0.00 0.00 0.00 2.69
23 24 7.138736 ACATGAAGGTACATTTTTCGTCTTTG 58.861 34.615 0.00 0.00 0.00 2.77
29 30 9.787532 ATCATAAACATGAAGGTACATTTTTCG 57.212 29.630 0.00 0.00 33.89 3.46
35 36 7.586349 AGGGAATCATAAACATGAAGGTACAT 58.414 34.615 0.00 0.00 33.83 2.29
36 37 6.969043 AGGGAATCATAAACATGAAGGTACA 58.031 36.000 0.00 0.00 33.83 2.90
37 38 7.283329 AGAGGGAATCATAAACATGAAGGTAC 58.717 38.462 0.00 0.00 33.83 3.34
38 39 7.451731 AGAGGGAATCATAAACATGAAGGTA 57.548 36.000 0.00 0.00 33.83 3.08
39 40 6.332976 AGAGGGAATCATAAACATGAAGGT 57.667 37.500 0.00 0.00 33.83 3.50
41 42 8.737168 TGTAAGAGGGAATCATAAACATGAAG 57.263 34.615 0.00 0.00 33.83 3.02
42 43 9.527157 TTTGTAAGAGGGAATCATAAACATGAA 57.473 29.630 0.00 0.00 33.83 2.57
182 183 5.679734 TCTTGATTGAAGTTCTCTTGTGC 57.320 39.130 4.17 0.00 33.64 4.57
199 200 4.042062 TGGATCTTGAAGCCTCTTTCTTGA 59.958 41.667 0.00 0.00 33.26 3.02
201 202 4.202503 TGTGGATCTTGAAGCCTCTTTCTT 60.203 41.667 0.00 0.00 33.26 2.52
231 232 6.820152 TCAATTACATGTCATCTCAGTCTTGG 59.180 38.462 0.00 0.00 0.00 3.61
232 233 7.838771 TCAATTACATGTCATCTCAGTCTTG 57.161 36.000 0.00 0.00 0.00 3.02
236 237 9.671279 TGTTTATCAATTACATGTCATCTCAGT 57.329 29.630 0.00 0.00 0.00 3.41
290 291 1.280982 CACTGATCACGGGATGTTCG 58.719 55.000 3.97 0.00 32.67 3.95
295 296 0.179037 CATGCCACTGATCACGGGAT 60.179 55.000 0.00 0.00 36.13 3.85
332 333 2.690778 GCCCAACTAGCTGCCGTTG 61.691 63.158 19.49 19.49 40.03 4.10
333 334 2.359975 GCCCAACTAGCTGCCGTT 60.360 61.111 0.00 0.00 0.00 4.44
439 440 8.487028 CAAGTATTTCCAGAGGGAGTATAAACT 58.513 37.037 0.00 0.00 46.01 2.66
442 443 7.622081 TGACAAGTATTTCCAGAGGGAGTATAA 59.378 37.037 0.00 0.00 46.01 0.98
443 444 7.069578 GTGACAAGTATTTCCAGAGGGAGTATA 59.930 40.741 0.00 0.00 46.01 1.47
444 445 5.964477 TGACAAGTATTTCCAGAGGGAGTAT 59.036 40.000 0.00 0.00 46.01 2.12
445 446 5.187186 GTGACAAGTATTTCCAGAGGGAGTA 59.813 44.000 0.00 0.00 46.01 2.59
446 447 4.020128 GTGACAAGTATTTCCAGAGGGAGT 60.020 45.833 0.00 0.00 46.01 3.85
447 448 4.508662 GTGACAAGTATTTCCAGAGGGAG 58.491 47.826 0.00 0.00 46.01 4.30
449 450 3.009033 TGGTGACAAGTATTTCCAGAGGG 59.991 47.826 0.00 0.00 37.44 4.30
450 451 4.286297 TGGTGACAAGTATTTCCAGAGG 57.714 45.455 0.00 0.00 37.44 3.69
464 465 5.398236 TCCCCTTTATTCATTTTGGTGACA 58.602 37.500 0.00 0.00 39.83 3.58
465 466 5.993748 TCCCCTTTATTCATTTTGGTGAC 57.006 39.130 0.00 0.00 0.00 3.67
466 467 6.022315 ACATCCCCTTTATTCATTTTGGTGA 58.978 36.000 0.00 0.00 0.00 4.02
467 468 6.298441 ACATCCCCTTTATTCATTTTGGTG 57.702 37.500 0.00 0.00 0.00 4.17
468 469 8.067488 AGATACATCCCCTTTATTCATTTTGGT 58.933 33.333 0.00 0.00 0.00 3.67
469 470 8.482852 AGATACATCCCCTTTATTCATTTTGG 57.517 34.615 0.00 0.00 0.00 3.28
474 475 9.343994 ACATCTAGATACATCCCCTTTATTCAT 57.656 33.333 4.54 0.00 0.00 2.57
475 476 8.742125 ACATCTAGATACATCCCCTTTATTCA 57.258 34.615 4.54 0.00 0.00 2.57
482 483 9.845214 ACTAAAATACATCTAGATACATCCCCT 57.155 33.333 4.54 0.00 0.00 4.79
504 505 9.886132 GACAAAAAGGGATGTATCTAGAACTAA 57.114 33.333 0.00 0.00 0.00 2.24
505 506 8.483758 GGACAAAAAGGGATGTATCTAGAACTA 58.516 37.037 0.00 0.00 0.00 2.24
506 507 7.037586 TGGACAAAAAGGGATGTATCTAGAACT 60.038 37.037 0.00 0.00 0.00 3.01
507 508 7.110155 TGGACAAAAAGGGATGTATCTAGAAC 58.890 38.462 0.00 0.00 0.00 3.01
508 509 7.265599 TGGACAAAAAGGGATGTATCTAGAA 57.734 36.000 0.00 0.00 0.00 2.10
509 510 6.884472 TGGACAAAAAGGGATGTATCTAGA 57.116 37.500 0.00 0.00 0.00 2.43
510 511 8.525290 AAATGGACAAAAAGGGATGTATCTAG 57.475 34.615 0.00 0.00 0.00 2.43
511 512 8.893563 AAAATGGACAAAAAGGGATGTATCTA 57.106 30.769 0.00 0.00 0.00 1.98
512 513 7.797121 AAAATGGACAAAAAGGGATGTATCT 57.203 32.000 0.00 0.00 0.00 1.98
514 515 9.889128 CATTAAAATGGACAAAAAGGGATGTAT 57.111 29.630 0.00 0.00 32.78 2.29
515 516 9.094578 TCATTAAAATGGACAAAAAGGGATGTA 57.905 29.630 3.00 0.00 37.03 2.29
516 517 7.877612 GTCATTAAAATGGACAAAAAGGGATGT 59.122 33.333 3.00 0.00 37.03 3.06
517 518 7.877097 TGTCATTAAAATGGACAAAAAGGGATG 59.123 33.333 3.00 0.00 37.03 3.51
518 519 7.972301 TGTCATTAAAATGGACAAAAAGGGAT 58.028 30.769 3.00 0.00 37.03 3.85
519 520 7.366847 TGTCATTAAAATGGACAAAAAGGGA 57.633 32.000 3.00 0.00 37.03 4.20
520 521 7.714813 ACTTGTCATTAAAATGGACAAAAAGGG 59.285 33.333 15.23 9.72 36.72 3.95
521 522 8.661352 ACTTGTCATTAAAATGGACAAAAAGG 57.339 30.769 15.23 9.93 36.72 3.11
527 528 9.619316 CGAAAATACTTGTCATTAAAATGGACA 57.381 29.630 3.00 0.00 37.03 4.02
528 529 9.072294 CCGAAAATACTTGTCATTAAAATGGAC 57.928 33.333 3.00 0.00 37.03 4.02
529 530 9.015367 TCCGAAAATACTTGTCATTAAAATGGA 57.985 29.630 3.00 0.00 37.03 3.41
530 531 9.072294 GTCCGAAAATACTTGTCATTAAAATGG 57.928 33.333 3.00 0.00 37.03 3.16
531 532 8.785101 CGTCCGAAAATACTTGTCATTAAAATG 58.215 33.333 0.00 0.00 37.75 2.32
532 533 7.966204 CCGTCCGAAAATACTTGTCATTAAAAT 59.034 33.333 0.00 0.00 0.00 1.82
533 534 7.172875 TCCGTCCGAAAATACTTGTCATTAAAA 59.827 33.333 0.00 0.00 0.00 1.52
534 535 6.649973 TCCGTCCGAAAATACTTGTCATTAAA 59.350 34.615 0.00 0.00 0.00 1.52
535 536 6.164876 TCCGTCCGAAAATACTTGTCATTAA 58.835 36.000 0.00 0.00 0.00 1.40
536 537 5.722263 TCCGTCCGAAAATACTTGTCATTA 58.278 37.500 0.00 0.00 0.00 1.90
537 538 4.571919 TCCGTCCGAAAATACTTGTCATT 58.428 39.130 0.00 0.00 0.00 2.57
538 539 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
539 540 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
540 541 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
541 542 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
542 543 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
543 544 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
544 545 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
545 546 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
546 547 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
547 548 1.755380 CTACTCCCTCCGTCCGAAAAT 59.245 52.381 0.00 0.00 0.00 1.82
548 549 1.180029 CTACTCCCTCCGTCCGAAAA 58.820 55.000 0.00 0.00 0.00 2.29
549 550 0.038744 ACTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46
550 551 0.038744 AACTACTCCCTCCGTCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
551 552 0.679002 CAACTACTCCCTCCGTCCGA 60.679 60.000 0.00 0.00 0.00 4.55
552 553 0.964358 ACAACTACTCCCTCCGTCCG 60.964 60.000 0.00 0.00 0.00 4.79
553 554 0.816373 GACAACTACTCCCTCCGTCC 59.184 60.000 0.00 0.00 0.00 4.79
554 555 1.744522 GAGACAACTACTCCCTCCGTC 59.255 57.143 0.00 0.00 0.00 4.79
555 556 1.616456 GGAGACAACTACTCCCTCCGT 60.616 57.143 0.00 0.00 45.64 4.69
556 557 1.104630 GGAGACAACTACTCCCTCCG 58.895 60.000 0.00 0.00 45.64 4.63
562 563 3.066481 GGTATGGACGGAGACAACTACTC 59.934 52.174 0.00 0.00 0.00 2.59
563 564 3.022406 GGTATGGACGGAGACAACTACT 58.978 50.000 0.00 0.00 0.00 2.57
564 565 2.756760 TGGTATGGACGGAGACAACTAC 59.243 50.000 0.00 0.00 0.00 2.73
572 573 5.277857 AGTCTAATTTGGTATGGACGGAG 57.722 43.478 0.00 0.00 0.00 4.63
630 631 5.463392 GCAAACATGAAGTCGCTATATCTCA 59.537 40.000 0.00 0.00 0.00 3.27
682 683 6.757947 CCCAAACGATTTTGAATGATGCTTAT 59.242 34.615 0.36 0.00 44.38 1.73
699 997 6.795144 TTATATCTACAACCTCCCAAACGA 57.205 37.500 0.00 0.00 0.00 3.85
764 1062 7.466746 TTTTTGATGAGGGAATTTAGTGGAG 57.533 36.000 0.00 0.00 0.00 3.86
787 1085 5.089970 ACTGCTTTGGCTTCTTTTTCTTT 57.910 34.783 0.00 0.00 39.59 2.52
799 1097 0.250727 TGGTCTGGTACTGCTTTGGC 60.251 55.000 0.00 0.00 39.26 4.52
805 1103 1.446272 GCGAGTGGTCTGGTACTGC 60.446 63.158 0.00 0.00 0.00 4.40
1080 1378 1.737363 GCAGTCTTGTCGATGGAGGAC 60.737 57.143 0.00 0.00 34.99 3.85
1526 1859 0.672342 GCGCCCGAGTTAGGAATCTA 59.328 55.000 0.00 0.00 0.00 1.98
1527 1860 1.043673 AGCGCCCGAGTTAGGAATCT 61.044 55.000 2.29 0.00 0.00 2.40
1528 1861 0.876342 CAGCGCCCGAGTTAGGAATC 60.876 60.000 2.29 0.00 0.00 2.52
1558 1891 0.666274 TTTCGTGACCTACAGCAGCG 60.666 55.000 0.00 0.00 0.00 5.18
1559 1892 1.726853 ATTTCGTGACCTACAGCAGC 58.273 50.000 0.00 0.00 0.00 5.25
1560 1893 3.123621 GTGAATTTCGTGACCTACAGCAG 59.876 47.826 0.00 0.00 0.00 4.24
1561 1894 3.064207 GTGAATTTCGTGACCTACAGCA 58.936 45.455 0.00 0.00 0.00 4.41
1562 1895 2.415512 GGTGAATTTCGTGACCTACAGC 59.584 50.000 0.00 0.00 0.00 4.40
1563 1896 3.679980 CAGGTGAATTTCGTGACCTACAG 59.320 47.826 6.59 0.00 36.65 2.74
2419 2785 2.575461 GCCATGGCCAAGAAGCAC 59.425 61.111 27.24 0.00 34.56 4.40
2468 2834 6.601613 ACCAATGTGAAGAAAAGTACAGTGAA 59.398 34.615 0.00 0.00 40.39 3.18
2564 2937 8.637099 TCCACATTGAAAAGAAATCAACACATA 58.363 29.630 0.00 0.00 39.43 2.29
2726 3116 9.011095 CAACATATAGGCAATGAGATCAGAAAT 57.989 33.333 0.00 0.00 0.00 2.17
2733 3123 8.957466 CATCAATCAACATATAGGCAATGAGAT 58.043 33.333 2.10 2.90 0.00 2.75
2883 3274 6.855375 ATCCTCCCCTCAGAGAAATATTTT 57.145 37.500 1.43 0.00 35.82 1.82
2924 3315 0.107508 CATCTCCAACGCCCAGACAT 60.108 55.000 0.00 0.00 0.00 3.06
2925 3316 1.191489 TCATCTCCAACGCCCAGACA 61.191 55.000 0.00 0.00 0.00 3.41
2926 3317 0.179000 ATCATCTCCAACGCCCAGAC 59.821 55.000 0.00 0.00 0.00 3.51
2927 3318 0.178767 CATCATCTCCAACGCCCAGA 59.821 55.000 0.00 0.00 0.00 3.86
2928 3319 0.816825 CCATCATCTCCAACGCCCAG 60.817 60.000 0.00 0.00 0.00 4.45
2929 3320 1.224315 CCATCATCTCCAACGCCCA 59.776 57.895 0.00 0.00 0.00 5.36
2930 3321 0.109342 ATCCATCATCTCCAACGCCC 59.891 55.000 0.00 0.00 0.00 6.13
2931 3322 1.202687 TGATCCATCATCTCCAACGCC 60.203 52.381 0.00 0.00 31.92 5.68
2932 3323 1.869767 GTGATCCATCATCTCCAACGC 59.130 52.381 0.00 0.00 39.30 4.84
2933 3324 3.388308 GAGTGATCCATCATCTCCAACG 58.612 50.000 0.00 0.00 39.30 4.10
2934 3325 3.390639 AGGAGTGATCCATCATCTCCAAC 59.609 47.826 24.77 10.41 46.21 3.77
2935 3326 3.390311 CAGGAGTGATCCATCATCTCCAA 59.610 47.826 24.77 0.00 46.21 3.53
2936 3327 2.970640 CAGGAGTGATCCATCATCTCCA 59.029 50.000 24.77 0.00 46.21 3.86
2937 3328 3.237746 TCAGGAGTGATCCATCATCTCC 58.762 50.000 20.01 20.01 45.31 3.71
2938 3329 4.588106 TCTTCAGGAGTGATCCATCATCTC 59.412 45.833 0.00 9.13 39.30 2.75
2939 3330 4.554683 TCTTCAGGAGTGATCCATCATCT 58.445 43.478 0.00 0.00 39.30 2.90
2940 3331 4.952071 TCTTCAGGAGTGATCCATCATC 57.048 45.455 0.00 0.00 39.30 2.92
2941 3332 5.156649 AGATCTTCAGGAGTGATCCATCAT 58.843 41.667 0.00 0.00 39.30 2.45
2942 3333 4.554683 AGATCTTCAGGAGTGATCCATCA 58.445 43.478 0.00 0.00 37.80 3.07
2943 3334 5.549742 AAGATCTTCAGGAGTGATCCATC 57.450 43.478 0.88 0.00 37.80 3.51
2944 3335 5.163216 GGAAAGATCTTCAGGAGTGATCCAT 60.163 44.000 8.78 0.00 37.80 3.41
2945 3336 4.163078 GGAAAGATCTTCAGGAGTGATCCA 59.837 45.833 8.78 0.00 37.80 3.41
2946 3337 4.408596 AGGAAAGATCTTCAGGAGTGATCC 59.591 45.833 8.78 8.55 37.80 3.36
2947 3338 5.104982 ACAGGAAAGATCTTCAGGAGTGATC 60.105 44.000 8.78 0.00 37.46 2.92
2948 3339 4.782156 ACAGGAAAGATCTTCAGGAGTGAT 59.218 41.667 8.78 0.00 30.85 3.06
2949 3340 4.163427 ACAGGAAAGATCTTCAGGAGTGA 58.837 43.478 8.78 0.00 0.00 3.41
2950 3341 4.502962 GACAGGAAAGATCTTCAGGAGTG 58.497 47.826 8.78 3.89 0.00 3.51
2951 3342 3.194542 CGACAGGAAAGATCTTCAGGAGT 59.805 47.826 8.78 4.46 0.00 3.85
2952 3343 3.194542 ACGACAGGAAAGATCTTCAGGAG 59.805 47.826 8.78 1.20 0.00 3.69
2953 3344 3.165875 ACGACAGGAAAGATCTTCAGGA 58.834 45.455 8.78 0.00 0.00 3.86
2954 3345 3.601443 ACGACAGGAAAGATCTTCAGG 57.399 47.619 8.78 1.87 0.00 3.86
2955 3346 4.815269 AGAACGACAGGAAAGATCTTCAG 58.185 43.478 8.78 1.91 0.00 3.02
2956 3347 4.322049 GGAGAACGACAGGAAAGATCTTCA 60.322 45.833 8.78 0.00 0.00 3.02
2957 3348 4.081917 AGGAGAACGACAGGAAAGATCTTC 60.082 45.833 8.78 2.54 0.00 2.87
2958 3349 3.835395 AGGAGAACGACAGGAAAGATCTT 59.165 43.478 0.88 0.88 0.00 2.40
2959 3350 3.436243 AGGAGAACGACAGGAAAGATCT 58.564 45.455 0.00 0.00 0.00 2.75
2960 3351 3.878160 AGGAGAACGACAGGAAAGATC 57.122 47.619 0.00 0.00 0.00 2.75
2961 3352 3.367498 CGAAGGAGAACGACAGGAAAGAT 60.367 47.826 0.00 0.00 0.00 2.40
2962 3353 2.030185 CGAAGGAGAACGACAGGAAAGA 60.030 50.000 0.00 0.00 0.00 2.52
2963 3354 2.288273 ACGAAGGAGAACGACAGGAAAG 60.288 50.000 0.00 0.00 0.00 2.62
2964 3355 1.684983 ACGAAGGAGAACGACAGGAAA 59.315 47.619 0.00 0.00 0.00 3.13
2965 3356 1.325355 ACGAAGGAGAACGACAGGAA 58.675 50.000 0.00 0.00 0.00 3.36
2966 3357 1.325355 AACGAAGGAGAACGACAGGA 58.675 50.000 0.00 0.00 0.00 3.86
2967 3358 2.059541 GAAACGAAGGAGAACGACAGG 58.940 52.381 0.00 0.00 0.00 4.00
2968 3359 2.981140 GAGAAACGAAGGAGAACGACAG 59.019 50.000 0.00 0.00 0.00 3.51
2969 3360 2.359848 TGAGAAACGAAGGAGAACGACA 59.640 45.455 0.00 0.00 0.00 4.35
2970 3361 3.009301 TGAGAAACGAAGGAGAACGAC 57.991 47.619 0.00 0.00 0.00 4.34
2971 3362 3.936372 ATGAGAAACGAAGGAGAACGA 57.064 42.857 0.00 0.00 0.00 3.85
2972 3363 4.686554 AGAAATGAGAAACGAAGGAGAACG 59.313 41.667 0.00 0.00 0.00 3.95
2973 3364 5.467063 ACAGAAATGAGAAACGAAGGAGAAC 59.533 40.000 0.00 0.00 0.00 3.01
2974 3365 5.611374 ACAGAAATGAGAAACGAAGGAGAA 58.389 37.500 0.00 0.00 0.00 2.87
2975 3366 5.215252 ACAGAAATGAGAAACGAAGGAGA 57.785 39.130 0.00 0.00 0.00 3.71
2976 3367 5.334414 CCAACAGAAATGAGAAACGAAGGAG 60.334 44.000 0.00 0.00 0.00 3.69
2977 3368 4.515191 CCAACAGAAATGAGAAACGAAGGA 59.485 41.667 0.00 0.00 0.00 3.36
2978 3369 4.275936 ACCAACAGAAATGAGAAACGAAGG 59.724 41.667 0.00 0.00 0.00 3.46
2979 3370 5.207768 CACCAACAGAAATGAGAAACGAAG 58.792 41.667 0.00 0.00 0.00 3.79
2980 3371 4.497340 GCACCAACAGAAATGAGAAACGAA 60.497 41.667 0.00 0.00 0.00 3.85
2981 3372 3.003275 GCACCAACAGAAATGAGAAACGA 59.997 43.478 0.00 0.00 0.00 3.85
2982 3373 3.003689 AGCACCAACAGAAATGAGAAACG 59.996 43.478 0.00 0.00 0.00 3.60
2983 3374 4.276926 AGAGCACCAACAGAAATGAGAAAC 59.723 41.667 0.00 0.00 0.00 2.78
2984 3375 4.276678 CAGAGCACCAACAGAAATGAGAAA 59.723 41.667 0.00 0.00 0.00 2.52
2985 3376 3.817084 CAGAGCACCAACAGAAATGAGAA 59.183 43.478 0.00 0.00 0.00 2.87
2986 3377 3.181451 ACAGAGCACCAACAGAAATGAGA 60.181 43.478 0.00 0.00 0.00 3.27
2987 3378 3.144506 ACAGAGCACCAACAGAAATGAG 58.855 45.455 0.00 0.00 0.00 2.90
2988 3379 3.213206 ACAGAGCACCAACAGAAATGA 57.787 42.857 0.00 0.00 0.00 2.57
2989 3380 5.633830 ATTACAGAGCACCAACAGAAATG 57.366 39.130 0.00 0.00 0.00 2.32
2990 3381 6.942576 ACTTATTACAGAGCACCAACAGAAAT 59.057 34.615 0.00 0.00 0.00 2.17
2991 3382 6.296026 ACTTATTACAGAGCACCAACAGAAA 58.704 36.000 0.00 0.00 0.00 2.52
2992 3383 5.865085 ACTTATTACAGAGCACCAACAGAA 58.135 37.500 0.00 0.00 0.00 3.02
2993 3384 5.483685 ACTTATTACAGAGCACCAACAGA 57.516 39.130 0.00 0.00 0.00 3.41
2994 3385 7.667043 TTTACTTATTACAGAGCACCAACAG 57.333 36.000 0.00 0.00 0.00 3.16
2995 3386 7.934665 TCTTTTACTTATTACAGAGCACCAACA 59.065 33.333 0.00 0.00 0.00 3.33
2996 3387 8.228464 GTCTTTTACTTATTACAGAGCACCAAC 58.772 37.037 0.00 0.00 0.00 3.77
2997 3388 8.154856 AGTCTTTTACTTATTACAGAGCACCAA 58.845 33.333 0.00 0.00 33.35 3.67
2998 3389 7.676947 AGTCTTTTACTTATTACAGAGCACCA 58.323 34.615 0.00 0.00 33.35 4.17
2999 3390 7.278203 GGAGTCTTTTACTTATTACAGAGCACC 59.722 40.741 0.00 0.00 39.07 5.01
3000 3391 7.009357 CGGAGTCTTTTACTTATTACAGAGCAC 59.991 40.741 0.00 0.00 39.07 4.40
3001 3392 7.033791 CGGAGTCTTTTACTTATTACAGAGCA 58.966 38.462 0.00 0.00 39.07 4.26
3002 3393 7.034397 ACGGAGTCTTTTACTTATTACAGAGC 58.966 38.462 0.00 0.00 29.74 4.09
3003 3394 8.983307 AACGGAGTCTTTTACTTATTACAGAG 57.017 34.615 0.00 0.00 45.00 3.35
3007 3398 9.911980 GCATAAACGGAGTCTTTTACTTATTAC 57.088 33.333 0.00 0.00 45.00 1.89
3008 3399 9.880157 AGCATAAACGGAGTCTTTTACTTATTA 57.120 29.630 0.00 0.00 45.00 0.98
3009 3400 8.788325 AGCATAAACGGAGTCTTTTACTTATT 57.212 30.769 0.00 0.00 45.00 1.40
3010 3401 8.788325 AAGCATAAACGGAGTCTTTTACTTAT 57.212 30.769 0.00 0.00 45.00 1.73
3011 3402 8.092687 AGAAGCATAAACGGAGTCTTTTACTTA 58.907 33.333 0.00 0.00 45.00 2.24
3012 3403 6.935208 AGAAGCATAAACGGAGTCTTTTACTT 59.065 34.615 0.00 0.00 45.00 2.24
3013 3404 6.465084 AGAAGCATAAACGGAGTCTTTTACT 58.535 36.000 0.00 0.00 45.00 2.24
3014 3405 6.723131 AGAAGCATAAACGGAGTCTTTTAC 57.277 37.500 0.00 0.00 45.00 2.01
3015 3406 6.534079 GCTAGAAGCATAAACGGAGTCTTTTA 59.466 38.462 0.00 0.00 40.48 1.52
3016 3407 5.351740 GCTAGAAGCATAAACGGAGTCTTTT 59.648 40.000 0.00 0.00 40.48 2.27
3017 3408 4.870991 GCTAGAAGCATAAACGGAGTCTTT 59.129 41.667 0.00 0.00 40.48 2.52
3018 3409 4.434520 GCTAGAAGCATAAACGGAGTCTT 58.565 43.478 0.00 0.00 40.48 3.01
3019 3410 3.181474 GGCTAGAAGCATAAACGGAGTCT 60.181 47.826 0.00 0.00 42.37 3.24
3020 3411 3.124560 GGCTAGAAGCATAAACGGAGTC 58.875 50.000 0.00 0.00 42.37 3.36
3021 3412 2.766828 AGGCTAGAAGCATAAACGGAGT 59.233 45.455 0.00 0.00 44.82 3.85
3022 3413 3.068873 AGAGGCTAGAAGCATAAACGGAG 59.931 47.826 0.00 0.00 44.75 4.63
3023 3414 3.031736 AGAGGCTAGAAGCATAAACGGA 58.968 45.455 0.00 0.00 44.75 4.69
3024 3415 3.460857 AGAGGCTAGAAGCATAAACGG 57.539 47.619 0.00 0.00 44.75 4.44
3025 3416 6.043411 AGTTTAGAGGCTAGAAGCATAAACG 58.957 40.000 17.97 0.00 44.75 3.60
3026 3417 7.851387 AAGTTTAGAGGCTAGAAGCATAAAC 57.149 36.000 17.15 17.15 44.75 2.01
3031 3422 9.547753 CAATATAAAGTTTAGAGGCTAGAAGCA 57.452 33.333 1.21 0.00 44.75 3.91
3032 3423 8.994170 CCAATATAAAGTTTAGAGGCTAGAAGC 58.006 37.037 1.21 0.00 41.46 3.86
3033 3424 8.994170 GCCAATATAAAGTTTAGAGGCTAGAAG 58.006 37.037 16.76 0.00 36.72 2.85
3034 3425 8.904099 GCCAATATAAAGTTTAGAGGCTAGAA 57.096 34.615 16.76 0.00 36.72 2.10
3039 3430 8.568794 CCTAAAGCCAATATAAAGTTTAGAGGC 58.431 37.037 16.49 16.49 39.82 4.70
3040 3431 8.568794 GCCTAAAGCCAATATAAAGTTTAGAGG 58.431 37.037 1.21 2.09 31.83 3.69
3041 3432 9.343539 AGCCTAAAGCCAATATAAAGTTTAGAG 57.656 33.333 1.21 0.00 45.47 2.43
3042 3433 9.695155 AAGCCTAAAGCCAATATAAAGTTTAGA 57.305 29.630 1.21 0.00 45.47 2.10
3048 3439 9.612620 CGATAAAAGCCTAAAGCCAATATAAAG 57.387 33.333 0.00 0.00 45.47 1.85
3049 3440 9.127277 ACGATAAAAGCCTAAAGCCAATATAAA 57.873 29.630 0.00 0.00 45.47 1.40
3050 3441 8.685838 ACGATAAAAGCCTAAAGCCAATATAA 57.314 30.769 0.00 0.00 45.47 0.98
3051 3442 8.564574 CAACGATAAAAGCCTAAAGCCAATATA 58.435 33.333 0.00 0.00 45.47 0.86
3052 3443 7.284489 TCAACGATAAAAGCCTAAAGCCAATAT 59.716 33.333 0.00 0.00 45.47 1.28
3053 3444 6.600032 TCAACGATAAAAGCCTAAAGCCAATA 59.400 34.615 0.00 0.00 45.47 1.90
3054 3445 5.417580 TCAACGATAAAAGCCTAAAGCCAAT 59.582 36.000 0.00 0.00 45.47 3.16
3055 3446 4.762765 TCAACGATAAAAGCCTAAAGCCAA 59.237 37.500 0.00 0.00 45.47 4.52
3056 3447 4.328536 TCAACGATAAAAGCCTAAAGCCA 58.671 39.130 0.00 0.00 45.47 4.75
3057 3448 4.957759 TCAACGATAAAAGCCTAAAGCC 57.042 40.909 0.00 0.00 45.47 4.35
3058 3449 7.165977 GCTAAATCAACGATAAAAGCCTAAAGC 59.834 37.037 0.00 0.00 44.25 3.51
3059 3450 8.398665 AGCTAAATCAACGATAAAAGCCTAAAG 58.601 33.333 0.00 0.00 0.00 1.85
3060 3451 8.181573 CAGCTAAATCAACGATAAAAGCCTAAA 58.818 33.333 0.00 0.00 0.00 1.85
3061 3452 7.678690 GCAGCTAAATCAACGATAAAAGCCTAA 60.679 37.037 0.00 0.00 0.00 2.69
3062 3453 6.238374 GCAGCTAAATCAACGATAAAAGCCTA 60.238 38.462 0.00 0.00 0.00 3.93
3063 3454 5.449177 GCAGCTAAATCAACGATAAAAGCCT 60.449 40.000 0.00 0.00 0.00 4.58
3064 3455 4.735338 GCAGCTAAATCAACGATAAAAGCC 59.265 41.667 0.00 0.00 0.00 4.35
3065 3456 5.573146 AGCAGCTAAATCAACGATAAAAGC 58.427 37.500 0.00 0.00 0.00 3.51
3066 3457 6.904011 CAGAGCAGCTAAATCAACGATAAAAG 59.096 38.462 0.00 0.00 0.00 2.27
3067 3458 6.371548 ACAGAGCAGCTAAATCAACGATAAAA 59.628 34.615 0.00 0.00 0.00 1.52
3068 3459 5.874810 ACAGAGCAGCTAAATCAACGATAAA 59.125 36.000 0.00 0.00 0.00 1.40
3069 3460 5.419542 ACAGAGCAGCTAAATCAACGATAA 58.580 37.500 0.00 0.00 0.00 1.75
3070 3461 5.011090 ACAGAGCAGCTAAATCAACGATA 57.989 39.130 0.00 0.00 0.00 2.92
3071 3462 3.866651 ACAGAGCAGCTAAATCAACGAT 58.133 40.909 0.00 0.00 0.00 3.73
3072 3463 3.319137 ACAGAGCAGCTAAATCAACGA 57.681 42.857 0.00 0.00 0.00 3.85
3073 3464 4.177026 ACTACAGAGCAGCTAAATCAACG 58.823 43.478 0.00 0.00 0.00 4.10
3074 3465 6.334202 ACTACTACAGAGCAGCTAAATCAAC 58.666 40.000 0.00 0.00 0.00 3.18
3075 3466 6.531503 ACTACTACAGAGCAGCTAAATCAA 57.468 37.500 0.00 0.00 0.00 2.57
3076 3467 5.220873 CGACTACTACAGAGCAGCTAAATCA 60.221 44.000 0.00 0.00 0.00 2.57
3077 3468 5.209240 CGACTACTACAGAGCAGCTAAATC 58.791 45.833 0.00 0.00 0.00 2.17
3078 3469 4.036971 CCGACTACTACAGAGCAGCTAAAT 59.963 45.833 0.00 0.00 0.00 1.40
3079 3470 3.377485 CCGACTACTACAGAGCAGCTAAA 59.623 47.826 0.00 0.00 0.00 1.85
3080 3471 2.943690 CCGACTACTACAGAGCAGCTAA 59.056 50.000 0.00 0.00 0.00 3.09
3081 3472 2.169978 TCCGACTACTACAGAGCAGCTA 59.830 50.000 0.00 0.00 0.00 3.32
3082 3473 1.065345 TCCGACTACTACAGAGCAGCT 60.065 52.381 0.00 0.00 0.00 4.24
3083 3474 1.380524 TCCGACTACTACAGAGCAGC 58.619 55.000 0.00 0.00 0.00 5.25
3084 3475 3.206964 TCATCCGACTACTACAGAGCAG 58.793 50.000 0.00 0.00 0.00 4.24
3085 3476 3.277142 TCATCCGACTACTACAGAGCA 57.723 47.619 0.00 0.00 0.00 4.26
3086 3477 3.610585 GCATCATCCGACTACTACAGAGC 60.611 52.174 0.00 0.00 0.00 4.09
3087 3478 3.818210 AGCATCATCCGACTACTACAGAG 59.182 47.826 0.00 0.00 0.00 3.35
3088 3479 3.821748 AGCATCATCCGACTACTACAGA 58.178 45.455 0.00 0.00 0.00 3.41
3089 3480 4.576216 AAGCATCATCCGACTACTACAG 57.424 45.455 0.00 0.00 0.00 2.74
3090 3481 4.159693 ACAAAGCATCATCCGACTACTACA 59.840 41.667 0.00 0.00 0.00 2.74
3091 3482 4.683832 ACAAAGCATCATCCGACTACTAC 58.316 43.478 0.00 0.00 0.00 2.73
3092 3483 6.459670 TTACAAAGCATCATCCGACTACTA 57.540 37.500 0.00 0.00 0.00 1.82
3093 3484 3.895232 ACAAAGCATCATCCGACTACT 57.105 42.857 0.00 0.00 0.00 2.57
3094 3485 6.092259 AGTTTTACAAAGCATCATCCGACTAC 59.908 38.462 0.00 0.00 0.00 2.73
3095 3486 6.092122 CAGTTTTACAAAGCATCATCCGACTA 59.908 38.462 0.00 0.00 0.00 2.59
3096 3487 5.003804 AGTTTTACAAAGCATCATCCGACT 58.996 37.500 0.00 0.00 0.00 4.18
3097 3488 5.088739 CAGTTTTACAAAGCATCATCCGAC 58.911 41.667 0.00 0.00 0.00 4.79
3098 3489 5.000591 TCAGTTTTACAAAGCATCATCCGA 58.999 37.500 0.00 0.00 0.00 4.55
3099 3490 5.295431 TCAGTTTTACAAAGCATCATCCG 57.705 39.130 0.00 0.00 0.00 4.18
3100 3491 6.624423 ACATCAGTTTTACAAAGCATCATCC 58.376 36.000 0.00 0.00 0.00 3.51
3101 3492 7.484007 CAGACATCAGTTTTACAAAGCATCATC 59.516 37.037 0.00 0.00 0.00 2.92
3102 3493 7.310664 CAGACATCAGTTTTACAAAGCATCAT 58.689 34.615 0.00 0.00 0.00 2.45
3103 3494 6.294120 CCAGACATCAGTTTTACAAAGCATCA 60.294 38.462 0.00 0.00 0.00 3.07
3104 3495 6.088824 CCAGACATCAGTTTTACAAAGCATC 58.911 40.000 0.00 0.00 0.00 3.91
3105 3496 5.536161 ACCAGACATCAGTTTTACAAAGCAT 59.464 36.000 0.00 0.00 0.00 3.79
3106 3497 4.887071 ACCAGACATCAGTTTTACAAAGCA 59.113 37.500 0.00 0.00 0.00 3.91
3107 3498 5.215160 CACCAGACATCAGTTTTACAAAGC 58.785 41.667 0.00 0.00 0.00 3.51
3108 3499 5.009010 AGCACCAGACATCAGTTTTACAAAG 59.991 40.000 0.00 0.00 0.00 2.77
3109 3500 4.887071 AGCACCAGACATCAGTTTTACAAA 59.113 37.500 0.00 0.00 0.00 2.83
3110 3501 4.275689 CAGCACCAGACATCAGTTTTACAA 59.724 41.667 0.00 0.00 0.00 2.41
3111 3502 3.814842 CAGCACCAGACATCAGTTTTACA 59.185 43.478 0.00 0.00 0.00 2.41
3112 3503 3.815401 ACAGCACCAGACATCAGTTTTAC 59.185 43.478 0.00 0.00 0.00 2.01
3113 3504 4.065088 GACAGCACCAGACATCAGTTTTA 58.935 43.478 0.00 0.00 0.00 1.52
3114 3505 2.880890 GACAGCACCAGACATCAGTTTT 59.119 45.455 0.00 0.00 0.00 2.43
3115 3506 2.105477 AGACAGCACCAGACATCAGTTT 59.895 45.455 0.00 0.00 0.00 2.66
3116 3507 1.696336 AGACAGCACCAGACATCAGTT 59.304 47.619 0.00 0.00 0.00 3.16
3117 3508 1.001746 CAGACAGCACCAGACATCAGT 59.998 52.381 0.00 0.00 0.00 3.41
3118 3509 1.723220 CAGACAGCACCAGACATCAG 58.277 55.000 0.00 0.00 0.00 2.90
3119 3510 0.321034 GCAGACAGCACCAGACATCA 60.321 55.000 0.00 0.00 44.79 3.07
3120 3511 2.464682 GCAGACAGCACCAGACATC 58.535 57.895 0.00 0.00 44.79 3.06
3121 3512 4.709840 GCAGACAGCACCAGACAT 57.290 55.556 0.00 0.00 44.79 3.06
3128 3519 7.642978 CATTTTATAGAATGAAGCAGACAGCAC 59.357 37.037 9.83 0.00 41.37 4.40
3129 3520 7.201758 CCATTTTATAGAATGAAGCAGACAGCA 60.202 37.037 15.69 0.00 41.37 4.41
3130 3521 7.137426 CCATTTTATAGAATGAAGCAGACAGC 58.863 38.462 15.69 0.00 40.24 4.40
3131 3522 7.255381 CCCCATTTTATAGAATGAAGCAGACAG 60.255 40.741 15.69 0.00 38.93 3.51
3132 3523 6.547141 CCCCATTTTATAGAATGAAGCAGACA 59.453 38.462 15.69 0.00 38.93 3.41
3133 3524 6.515696 GCCCCATTTTATAGAATGAAGCAGAC 60.516 42.308 15.69 0.00 38.93 3.51
3134 3525 5.536161 GCCCCATTTTATAGAATGAAGCAGA 59.464 40.000 15.69 0.00 38.93 4.26
3135 3526 5.302568 TGCCCCATTTTATAGAATGAAGCAG 59.697 40.000 19.74 5.86 38.62 4.24
3136 3527 5.207354 TGCCCCATTTTATAGAATGAAGCA 58.793 37.500 19.74 19.74 39.89 3.91
3137 3528 5.279156 CCTGCCCCATTTTATAGAATGAAGC 60.279 44.000 15.69 16.22 38.93 3.86
3138 3529 5.244626 CCCTGCCCCATTTTATAGAATGAAG 59.755 44.000 15.69 8.56 38.93 3.02
3139 3530 5.147032 CCCTGCCCCATTTTATAGAATGAA 58.853 41.667 15.69 0.83 38.93 2.57
3140 3531 4.449081 CCCCTGCCCCATTTTATAGAATGA 60.449 45.833 15.69 0.00 38.93 2.57
3141 3532 3.834231 CCCCTGCCCCATTTTATAGAATG 59.166 47.826 8.66 8.66 36.89 2.67
3142 3533 3.181407 CCCCCTGCCCCATTTTATAGAAT 60.181 47.826 0.00 0.00 0.00 2.40
3143 3534 2.178984 CCCCCTGCCCCATTTTATAGAA 59.821 50.000 0.00 0.00 0.00 2.10
3144 3535 1.786441 CCCCCTGCCCCATTTTATAGA 59.214 52.381 0.00 0.00 0.00 1.98
3145 3536 2.309136 CCCCCTGCCCCATTTTATAG 57.691 55.000 0.00 0.00 0.00 1.31
3164 3555 0.471022 TTGAAGGAAAGGGGTTGCCC 60.471 55.000 0.00 0.00 44.51 5.36
3165 3556 1.419381 TTTGAAGGAAAGGGGTTGCC 58.581 50.000 0.00 0.00 0.00 4.52
3166 3557 3.552132 TTTTTGAAGGAAAGGGGTTGC 57.448 42.857 0.00 0.00 0.00 4.17
3190 3581 8.223330 AGCACCATCTGATCTAGGATTATTTTT 58.777 33.333 0.00 0.00 0.00 1.94
3191 3582 7.664731 CAGCACCATCTGATCTAGGATTATTTT 59.335 37.037 0.00 0.00 36.19 1.82
3192 3583 7.166851 CAGCACCATCTGATCTAGGATTATTT 58.833 38.462 0.00 0.00 36.19 1.40
3193 3584 6.296317 CCAGCACCATCTGATCTAGGATTATT 60.296 42.308 0.00 0.00 36.19 1.40
3194 3585 5.189342 CCAGCACCATCTGATCTAGGATTAT 59.811 44.000 0.00 0.00 36.19 1.28
3195 3586 4.529769 CCAGCACCATCTGATCTAGGATTA 59.470 45.833 0.00 0.00 36.19 1.75
3196 3587 3.327172 CCAGCACCATCTGATCTAGGATT 59.673 47.826 0.00 0.00 36.19 3.01
3197 3588 2.905085 CCAGCACCATCTGATCTAGGAT 59.095 50.000 0.00 0.00 36.19 3.24
3198 3589 2.091111 TCCAGCACCATCTGATCTAGGA 60.091 50.000 0.00 0.00 36.19 2.94
3199 3590 2.299582 CTCCAGCACCATCTGATCTAGG 59.700 54.545 0.00 0.00 36.19 3.02
3200 3591 3.229293 TCTCCAGCACCATCTGATCTAG 58.771 50.000 0.00 0.00 36.19 2.43
3201 3592 3.319031 TCTCCAGCACCATCTGATCTA 57.681 47.619 0.00 0.00 36.19 1.98
3202 3593 2.171568 TCTCCAGCACCATCTGATCT 57.828 50.000 0.00 0.00 36.19 2.75
3203 3594 2.996249 TTCTCCAGCACCATCTGATC 57.004 50.000 0.00 0.00 36.19 2.92
3281 3672 5.011023 AGTCCATCTCATATGACGCATAACA 59.989 40.000 0.00 0.00 29.74 2.41
3362 3753 8.037758 AGTATGTCAATACTTCAGTGAAGAAGG 58.962 37.037 34.16 20.81 45.55 3.46
3490 3884 1.963515 AGTTCCAACAGTTGCCATTCC 59.036 47.619 7.88 0.00 0.00 3.01
3494 3888 0.257328 TCCAGTTCCAACAGTTGCCA 59.743 50.000 7.88 0.00 0.00 4.92
3517 3911 2.792878 AGTATATTCGGACGGAGGGAG 58.207 52.381 0.00 0.00 0.00 4.30
3518 3912 2.889045 CAAGTATATTCGGACGGAGGGA 59.111 50.000 0.00 0.00 0.00 4.20
3519 3913 2.626743 ACAAGTATATTCGGACGGAGGG 59.373 50.000 0.00 0.00 0.00 4.30
3520 3914 3.317149 TGACAAGTATATTCGGACGGAGG 59.683 47.826 0.00 0.00 0.00 4.30
3521 3915 4.275196 TCTGACAAGTATATTCGGACGGAG 59.725 45.833 0.00 0.00 0.00 4.63
3522 3916 4.201657 TCTGACAAGTATATTCGGACGGA 58.798 43.478 0.00 0.00 0.00 4.69
3523 3917 4.275196 TCTCTGACAAGTATATTCGGACGG 59.725 45.833 0.00 0.00 0.00 4.79
3524 3918 5.419760 TCTCTGACAAGTATATTCGGACG 57.580 43.478 0.00 0.00 0.00 4.79
3525 3919 7.169982 CCATTTCTCTGACAAGTATATTCGGAC 59.830 40.741 0.00 0.00 0.00 4.79
3526 3920 7.069455 TCCATTTCTCTGACAAGTATATTCGGA 59.931 37.037 0.00 0.00 0.00 4.55
3527 3921 7.210174 TCCATTTCTCTGACAAGTATATTCGG 58.790 38.462 0.00 0.00 0.00 4.30
3528 3922 8.824159 ATCCATTTCTCTGACAAGTATATTCG 57.176 34.615 0.00 0.00 0.00 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.