Multiple sequence alignment - TraesCS3B01G250700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G250700 chr3B 100.000 3323 0 0 1 3323 400653609 400650287 0.000000e+00 6137.0
1 TraesCS3B01G250700 chr3B 92.982 228 13 3 1 226 488548131 488548357 2.470000e-86 329.0
2 TraesCS3B01G250700 chr3D 96.352 2440 54 11 759 3182 319517476 319519896 0.000000e+00 3980.0
3 TraesCS3B01G250700 chr3D 94.595 222 9 2 265 486 108290843 108291061 1.140000e-89 340.0
4 TraesCS3B01G250700 chr3D 97.794 136 3 0 3188 3323 319519975 319520110 5.540000e-58 235.0
5 TraesCS3B01G250700 chr3D 96.591 88 3 0 653 740 513627304 513627217 2.670000e-31 147.0
6 TraesCS3B01G250700 chr3A 95.300 2468 87 12 735 3187 406300571 406298118 0.000000e+00 3888.0
7 TraesCS3B01G250700 chr3A 97.794 136 3 0 3188 3323 406298044 406297909 5.540000e-58 235.0
8 TraesCS3B01G250700 chr1D 94.144 222 9 3 265 486 46330818 46331035 5.310000e-88 335.0
9 TraesCS3B01G250700 chr1D 93.939 99 4 2 643 740 463248103 463248200 7.430000e-32 148.0
10 TraesCS3B01G250700 chr1D 95.745 47 2 0 485 531 53423058 53423104 3.550000e-10 76.8
11 TraesCS3B01G250700 chr1B 93.043 230 11 3 263 491 640451459 640451234 6.870000e-87 331.0
12 TraesCS3B01G250700 chr7D 92.920 226 13 2 261 486 326052541 326052763 3.200000e-85 326.0
13 TraesCS3B01G250700 chr7D 92.891 211 13 2 1 211 525663160 525662952 4.160000e-79 305.0
14 TraesCS3B01G250700 chr7D 90.654 107 6 4 636 739 349263951 349264056 4.470000e-29 139.0
15 TraesCS3B01G250700 chr7D 95.833 48 2 0 485 532 581498494 581498541 9.880000e-11 78.7
16 TraesCS3B01G250700 chr7D 95.833 48 2 0 485 532 581658824 581658871 9.880000e-11 78.7
17 TraesCS3B01G250700 chr7D 86.111 72 8 2 1292 1362 134178487 134178417 3.550000e-10 76.8
18 TraesCS3B01G250700 chr6D 94.340 212 10 2 1 211 427315056 427314846 1.150000e-84 324.0
19 TraesCS3B01G250700 chr6D 93.365 211 12 2 1 210 192188189 192187980 8.950000e-81 311.0
20 TraesCS3B01G250700 chr6D 93.617 94 6 0 653 746 443958604 443958511 1.240000e-29 141.0
21 TraesCS3B01G250700 chr4D 94.340 212 11 1 1 211 210460432 210460221 1.150000e-84 324.0
22 TraesCS3B01G250700 chr4D 92.453 53 4 0 483 535 91720396 91720344 3.550000e-10 76.8
23 TraesCS3B01G250700 chr2D 93.243 222 12 2 265 486 284559957 284560175 1.150000e-84 324.0
24 TraesCS3B01G250700 chr4B 92.174 230 14 4 264 491 189677790 189677563 4.140000e-84 322.0
25 TraesCS3B01G250700 chr4B 90.196 51 5 0 485 535 643768012 643767962 2.140000e-07 67.6
26 TraesCS3B01G250700 chr4A 94.313 211 10 2 1 210 512018023 512018232 4.140000e-84 322.0
27 TraesCS3B01G250700 chr4A 94.792 96 3 1 652 747 680395125 680395032 7.430000e-32 148.0
28 TraesCS3B01G250700 chr4A 92.157 102 6 1 649 748 537598009 537597908 3.460000e-30 143.0
29 TraesCS3B01G250700 chr7B 91.525 236 14 4 252 486 376674489 376674719 1.490000e-83 320.0
30 TraesCS3B01G250700 chr7B 93.396 212 12 2 1 211 4239830 4239620 2.490000e-81 313.0
31 TraesCS3B01G250700 chr7B 93.000 100 6 1 645 743 734366835 734366934 9.610000e-31 145.0
32 TraesCS3B01G250700 chr5D 92.105 228 15 2 265 492 369716659 369716883 5.350000e-83 318.0
33 TraesCS3B01G250700 chr5D 92.000 50 4 0 483 532 257281936 257281887 1.650000e-08 71.3
34 TraesCS3B01G250700 chr6B 93.365 211 12 2 1 210 710771958 710772167 8.950000e-81 311.0
35 TraesCS3B01G250700 chr6B 94.444 90 5 0 653 742 718324428 718324339 4.470000e-29 139.0
36 TraesCS3B01G250700 chrUn 90.083 242 19 4 264 505 103268378 103268614 3.220000e-80 309.0
37 TraesCS3B01G250700 chr2A 92.925 212 15 0 1 212 763681929 763682140 3.220000e-80 309.0
38 TraesCS3B01G250700 chr2A 94.505 91 5 0 649 739 695156859 695156769 1.240000e-29 141.0
39 TraesCS3B01G250700 chr2A 94.231 52 3 0 483 534 724125600 724125651 2.750000e-11 80.5
40 TraesCS3B01G250700 chr6A 94.118 51 3 0 485 535 59301856 59301806 9.880000e-11 78.7
41 TraesCS3B01G250700 chr7A 86.111 72 8 2 1292 1362 133058771 133058701 3.550000e-10 76.8
42 TraesCS3B01G250700 chr7A 92.000 50 4 0 483 532 216133584 216133633 1.650000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G250700 chr3B 400650287 400653609 3322 True 6137.0 6137 100.000 1 3323 1 chr3B.!!$R1 3322
1 TraesCS3B01G250700 chr3D 319517476 319520110 2634 False 2107.5 3980 97.073 759 3323 2 chr3D.!!$F2 2564
2 TraesCS3B01G250700 chr3A 406297909 406300571 2662 True 2061.5 3888 96.547 735 3323 2 chr3A.!!$R1 2588

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
97 98 0.037975 TTTTACGTCACGAGGAGGCC 60.038 55.0 2.91 0.0 34.76 5.19 F
144 145 0.038526 CCGTCTGTTGGAGTAGCGTT 60.039 55.0 0.00 0.0 0.00 4.84 F
565 566 0.177141 AACACGCGGGCATATGTACT 59.823 50.0 9.12 0.0 0.00 2.73 F
1953 1972 0.258774 GTGGTCCCAACCCATATGCT 59.741 55.0 0.00 0.0 45.83 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1875 1894 1.133388 CCATATTGCCCACCCATCTGT 60.133 52.381 0.00 0.0 0.00 3.41 R
1923 1942 1.532794 GGGACCACCAAATGCACCA 60.533 57.895 0.00 0.0 39.85 4.17 R
2292 2311 1.102978 GTGGCACATTGGGGTACATC 58.897 55.000 13.86 0.0 44.52 3.06 R
2765 2794 2.560542 TCGTGCCAAAATAAACATGGCT 59.439 40.909 16.11 0.0 45.20 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 3.047877 CGGCGACTGGTTTGGGAC 61.048 66.667 0.00 0.00 0.00 4.46
44 45 2.267045 GTTTGGGACCAGATGCACC 58.733 57.895 0.00 0.00 0.00 5.01
45 46 0.251341 GTTTGGGACCAGATGCACCT 60.251 55.000 0.00 0.00 0.00 4.00
46 47 0.038166 TTTGGGACCAGATGCACCTC 59.962 55.000 0.00 0.00 0.00 3.85
47 48 2.184020 TTGGGACCAGATGCACCTCG 62.184 60.000 0.00 0.00 0.00 4.63
48 49 2.660064 GGGACCAGATGCACCTCGT 61.660 63.158 0.00 0.00 0.00 4.18
49 50 1.448540 GGACCAGATGCACCTCGTG 60.449 63.158 0.00 0.00 36.51 4.35
50 51 1.591703 GACCAGATGCACCTCGTGA 59.408 57.895 0.00 0.00 35.23 4.35
51 52 0.176680 GACCAGATGCACCTCGTGAT 59.823 55.000 0.00 0.00 35.23 3.06
52 53 0.107993 ACCAGATGCACCTCGTGATG 60.108 55.000 0.00 0.00 35.23 3.07
53 54 0.107993 CCAGATGCACCTCGTGATGT 60.108 55.000 0.00 0.00 35.23 3.06
54 55 1.136891 CCAGATGCACCTCGTGATGTA 59.863 52.381 0.00 0.00 35.23 2.29
55 56 2.418609 CCAGATGCACCTCGTGATGTAA 60.419 50.000 0.00 0.00 35.23 2.41
56 57 3.261580 CAGATGCACCTCGTGATGTAAA 58.738 45.455 0.00 0.00 35.23 2.01
57 58 3.873361 CAGATGCACCTCGTGATGTAAAT 59.127 43.478 0.00 0.00 35.23 1.40
58 59 4.333649 CAGATGCACCTCGTGATGTAAATT 59.666 41.667 0.00 0.00 35.23 1.82
59 60 4.943705 AGATGCACCTCGTGATGTAAATTT 59.056 37.500 0.00 0.00 35.23 1.82
60 61 4.418013 TGCACCTCGTGATGTAAATTTG 57.582 40.909 0.00 0.00 35.23 2.32
61 62 3.171277 GCACCTCGTGATGTAAATTTGC 58.829 45.455 0.00 0.00 35.23 3.68
62 63 3.365868 GCACCTCGTGATGTAAATTTGCA 60.366 43.478 11.51 11.51 35.23 4.08
63 64 4.158384 CACCTCGTGATGTAAATTTGCAC 58.842 43.478 11.35 7.90 35.23 4.57
64 65 3.190535 ACCTCGTGATGTAAATTTGCACC 59.809 43.478 11.35 1.94 0.00 5.01
65 66 3.416277 CTCGTGATGTAAATTTGCACCG 58.584 45.455 11.35 13.23 0.00 4.94
66 67 1.910819 CGTGATGTAAATTTGCACCGC 59.089 47.619 11.35 7.61 0.00 5.68
67 68 1.910819 GTGATGTAAATTTGCACCGCG 59.089 47.619 11.35 0.00 0.00 6.46
68 69 1.807142 TGATGTAAATTTGCACCGCGA 59.193 42.857 8.23 0.00 0.00 5.87
69 70 2.159585 TGATGTAAATTTGCACCGCGAG 60.160 45.455 8.23 0.00 0.00 5.03
84 85 3.016177 CGCGAGGTGTTGTATTTTACG 57.984 47.619 0.00 0.00 0.00 3.18
85 86 2.409378 CGCGAGGTGTTGTATTTTACGT 59.591 45.455 0.00 0.00 0.00 3.57
86 87 3.480825 CGCGAGGTGTTGTATTTTACGTC 60.481 47.826 0.00 0.00 0.00 4.34
87 88 3.429543 GCGAGGTGTTGTATTTTACGTCA 59.570 43.478 0.00 0.00 0.00 4.35
88 89 4.664891 GCGAGGTGTTGTATTTTACGTCAC 60.665 45.833 0.00 0.00 35.62 3.67
89 90 4.431986 CGAGGTGTTGTATTTTACGTCACG 60.432 45.833 0.00 0.00 36.48 4.35
90 91 4.619973 AGGTGTTGTATTTTACGTCACGA 58.380 39.130 2.91 0.00 36.48 4.35
91 92 4.682860 AGGTGTTGTATTTTACGTCACGAG 59.317 41.667 2.91 0.00 36.48 4.18
92 93 4.143263 GGTGTTGTATTTTACGTCACGAGG 60.143 45.833 2.91 0.00 36.48 4.63
93 94 4.681025 GTGTTGTATTTTACGTCACGAGGA 59.319 41.667 2.91 0.00 0.00 3.71
94 95 4.919168 TGTTGTATTTTACGTCACGAGGAG 59.081 41.667 2.91 0.00 0.00 3.69
95 96 4.100707 TGTATTTTACGTCACGAGGAGG 57.899 45.455 2.91 0.00 37.42 4.30
96 97 2.005971 ATTTTACGTCACGAGGAGGC 57.994 50.000 2.91 0.00 34.76 4.70
97 98 0.037975 TTTTACGTCACGAGGAGGCC 60.038 55.000 2.91 0.00 34.76 5.19
98 99 2.203972 TTTACGTCACGAGGAGGCCG 62.204 60.000 2.91 0.00 34.76 6.13
106 107 3.849951 GAGGAGGCCGCGATCCAA 61.850 66.667 21.71 0.00 38.12 3.53
107 108 3.164269 AGGAGGCCGCGATCCAAT 61.164 61.111 21.71 3.85 38.12 3.16
108 109 2.203209 GGAGGCCGCGATCCAATT 60.203 61.111 8.23 0.00 35.54 2.32
109 110 1.823899 GGAGGCCGCGATCCAATTT 60.824 57.895 8.23 0.00 35.54 1.82
110 111 1.384222 GGAGGCCGCGATCCAATTTT 61.384 55.000 8.23 0.00 35.54 1.82
111 112 0.455815 GAGGCCGCGATCCAATTTTT 59.544 50.000 8.23 0.00 0.00 1.94
129 130 4.695217 TTTTTCTTGCATATGGACCGTC 57.305 40.909 4.56 0.00 0.00 4.79
130 131 3.627395 TTTCTTGCATATGGACCGTCT 57.373 42.857 4.56 0.00 0.00 4.18
131 132 2.602257 TCTTGCATATGGACCGTCTG 57.398 50.000 4.56 0.00 0.00 3.51
132 133 1.831106 TCTTGCATATGGACCGTCTGT 59.169 47.619 4.56 0.00 0.00 3.41
133 134 2.236146 TCTTGCATATGGACCGTCTGTT 59.764 45.455 4.56 0.00 0.00 3.16
134 135 2.022764 TGCATATGGACCGTCTGTTG 57.977 50.000 4.56 0.00 0.00 3.33
135 136 1.299541 GCATATGGACCGTCTGTTGG 58.700 55.000 4.56 0.00 0.00 3.77
136 137 1.134521 GCATATGGACCGTCTGTTGGA 60.135 52.381 4.56 0.00 0.00 3.53
137 138 2.826428 CATATGGACCGTCTGTTGGAG 58.174 52.381 0.00 0.00 0.00 3.86
138 139 1.933021 TATGGACCGTCTGTTGGAGT 58.067 50.000 0.00 0.00 0.00 3.85
139 140 1.933021 ATGGACCGTCTGTTGGAGTA 58.067 50.000 0.00 0.00 0.00 2.59
140 141 1.254026 TGGACCGTCTGTTGGAGTAG 58.746 55.000 0.00 0.00 0.00 2.57
141 142 0.108756 GGACCGTCTGTTGGAGTAGC 60.109 60.000 0.00 0.00 0.00 3.58
142 143 0.456312 GACCGTCTGTTGGAGTAGCG 60.456 60.000 0.00 0.00 0.00 4.26
143 144 1.177256 ACCGTCTGTTGGAGTAGCGT 61.177 55.000 0.00 0.00 0.00 5.07
144 145 0.038526 CCGTCTGTTGGAGTAGCGTT 60.039 55.000 0.00 0.00 0.00 4.84
145 146 1.604693 CCGTCTGTTGGAGTAGCGTTT 60.605 52.381 0.00 0.00 0.00 3.60
146 147 2.132762 CGTCTGTTGGAGTAGCGTTTT 58.867 47.619 0.00 0.00 0.00 2.43
147 148 2.542595 CGTCTGTTGGAGTAGCGTTTTT 59.457 45.455 0.00 0.00 0.00 1.94
170 171 3.121738 ACCAGACGGTCCAAAAGTTAG 57.878 47.619 4.14 0.00 44.71 2.34
171 172 2.224450 ACCAGACGGTCCAAAAGTTAGG 60.224 50.000 4.14 0.00 44.71 2.69
172 173 2.224450 CCAGACGGTCCAAAAGTTAGGT 60.224 50.000 4.14 0.00 0.00 3.08
173 174 3.007182 CCAGACGGTCCAAAAGTTAGGTA 59.993 47.826 4.14 0.00 0.00 3.08
174 175 3.992427 CAGACGGTCCAAAAGTTAGGTAC 59.008 47.826 4.14 0.00 0.00 3.34
175 176 3.899980 AGACGGTCCAAAAGTTAGGTACT 59.100 43.478 4.14 0.00 46.37 2.73
189 190 8.983702 AAGTTAGGTACTTTTACATTTGGACA 57.016 30.769 0.00 0.00 44.73 4.02
190 191 8.983702 AGTTAGGTACTTTTACATTTGGACAA 57.016 30.769 0.00 0.00 41.75 3.18
191 192 9.582648 AGTTAGGTACTTTTACATTTGGACAAT 57.417 29.630 0.00 0.00 41.75 2.71
192 193 9.836076 GTTAGGTACTTTTACATTTGGACAATC 57.164 33.333 0.00 0.00 41.75 2.67
193 194 9.802039 TTAGGTACTTTTACATTTGGACAATCT 57.198 29.630 0.00 0.00 41.75 2.40
195 196 9.975218 AGGTACTTTTACATTTGGACAATCTAT 57.025 29.630 0.00 0.00 27.25 1.98
199 200 9.308000 ACTTTTACATTTGGACAATCTATTGGA 57.692 29.630 7.56 0.00 41.96 3.53
200 201 9.793252 CTTTTACATTTGGACAATCTATTGGAG 57.207 33.333 7.56 0.00 41.96 3.86
201 202 9.527157 TTTTACATTTGGACAATCTATTGGAGA 57.473 29.630 7.56 0.00 41.96 3.71
203 204 7.578310 ACATTTGGACAATCTATTGGAGATG 57.422 36.000 7.56 6.49 44.68 2.90
204 205 6.040166 ACATTTGGACAATCTATTGGAGATGC 59.960 38.462 7.56 0.00 44.68 3.91
205 206 5.378230 TTGGACAATCTATTGGAGATGCT 57.622 39.130 7.56 0.00 44.68 3.79
206 207 4.965814 TGGACAATCTATTGGAGATGCTC 58.034 43.478 7.56 0.00 44.68 4.26
207 208 4.657504 TGGACAATCTATTGGAGATGCTCT 59.342 41.667 7.56 0.00 44.68 4.09
208 209 5.840693 TGGACAATCTATTGGAGATGCTCTA 59.159 40.000 7.56 0.00 44.68 2.43
209 210 6.327365 TGGACAATCTATTGGAGATGCTCTAA 59.673 38.462 7.56 0.00 44.68 2.10
210 211 6.873076 GGACAATCTATTGGAGATGCTCTAAG 59.127 42.308 7.56 0.00 44.68 2.18
211 212 7.372260 ACAATCTATTGGAGATGCTCTAAGT 57.628 36.000 7.56 0.00 44.68 2.24
212 213 7.441017 ACAATCTATTGGAGATGCTCTAAGTC 58.559 38.462 7.56 0.00 44.68 3.01
213 214 7.289782 ACAATCTATTGGAGATGCTCTAAGTCT 59.710 37.037 7.56 0.00 44.68 3.24
214 215 8.801299 CAATCTATTGGAGATGCTCTAAGTCTA 58.199 37.037 0.00 0.00 44.68 2.59
215 216 7.753309 TCTATTGGAGATGCTCTAAGTCTAC 57.247 40.000 0.00 0.00 34.66 2.59
216 217 7.290813 TCTATTGGAGATGCTCTAAGTCTACA 58.709 38.462 0.00 0.00 34.66 2.74
217 218 6.798427 ATTGGAGATGCTCTAAGTCTACAA 57.202 37.500 2.11 2.11 44.45 2.41
218 219 5.584253 TGGAGATGCTCTAAGTCTACAAC 57.416 43.478 0.00 0.00 30.13 3.32
219 220 4.402793 TGGAGATGCTCTAAGTCTACAACC 59.597 45.833 0.00 0.00 30.13 3.77
220 221 4.202172 GGAGATGCTCTAAGTCTACAACCC 60.202 50.000 0.00 0.00 0.00 4.11
221 222 4.353777 AGATGCTCTAAGTCTACAACCCA 58.646 43.478 0.00 0.00 0.00 4.51
222 223 3.955650 TGCTCTAAGTCTACAACCCAC 57.044 47.619 0.00 0.00 0.00 4.61
223 224 3.507411 TGCTCTAAGTCTACAACCCACT 58.493 45.455 0.00 0.00 0.00 4.00
224 225 3.901844 TGCTCTAAGTCTACAACCCACTT 59.098 43.478 0.00 0.00 34.68 3.16
225 226 4.347000 TGCTCTAAGTCTACAACCCACTTT 59.653 41.667 0.00 0.00 32.56 2.66
226 227 5.163237 TGCTCTAAGTCTACAACCCACTTTT 60.163 40.000 0.00 0.00 32.56 2.27
227 228 5.408909 GCTCTAAGTCTACAACCCACTTTTC 59.591 44.000 0.00 0.00 32.56 2.29
228 229 6.741801 GCTCTAAGTCTACAACCCACTTTTCT 60.742 42.308 0.00 0.00 32.56 2.52
229 230 7.133133 TCTAAGTCTACAACCCACTTTTCTT 57.867 36.000 0.00 0.00 32.56 2.52
230 231 7.215085 TCTAAGTCTACAACCCACTTTTCTTC 58.785 38.462 0.00 0.00 32.56 2.87
231 232 5.632034 AGTCTACAACCCACTTTTCTTCT 57.368 39.130 0.00 0.00 0.00 2.85
232 233 5.612351 AGTCTACAACCCACTTTTCTTCTC 58.388 41.667 0.00 0.00 0.00 2.87
233 234 5.367060 AGTCTACAACCCACTTTTCTTCTCT 59.633 40.000 0.00 0.00 0.00 3.10
234 235 6.056236 GTCTACAACCCACTTTTCTTCTCTT 58.944 40.000 0.00 0.00 0.00 2.85
235 236 6.203145 GTCTACAACCCACTTTTCTTCTCTTC 59.797 42.308 0.00 0.00 0.00 2.87
236 237 5.117406 ACAACCCACTTTTCTTCTCTTCT 57.883 39.130 0.00 0.00 0.00 2.85
237 238 5.510430 ACAACCCACTTTTCTTCTCTTCTT 58.490 37.500 0.00 0.00 0.00 2.52
238 239 5.952347 ACAACCCACTTTTCTTCTCTTCTTT 59.048 36.000 0.00 0.00 0.00 2.52
239 240 6.437477 ACAACCCACTTTTCTTCTCTTCTTTT 59.563 34.615 0.00 0.00 0.00 2.27
240 241 7.039011 ACAACCCACTTTTCTTCTCTTCTTTTT 60.039 33.333 0.00 0.00 0.00 1.94
241 242 7.101652 ACCCACTTTTCTTCTCTTCTTTTTC 57.898 36.000 0.00 0.00 0.00 2.29
242 243 6.096987 ACCCACTTTTCTTCTCTTCTTTTTCC 59.903 38.462 0.00 0.00 0.00 3.13
243 244 6.322456 CCCACTTTTCTTCTCTTCTTTTTCCT 59.678 38.462 0.00 0.00 0.00 3.36
244 245 7.147828 CCCACTTTTCTTCTCTTCTTTTTCCTT 60.148 37.037 0.00 0.00 0.00 3.36
245 246 7.918033 CCACTTTTCTTCTCTTCTTTTTCCTTC 59.082 37.037 0.00 0.00 0.00 3.46
246 247 8.462016 CACTTTTCTTCTCTTCTTTTTCCTTCA 58.538 33.333 0.00 0.00 0.00 3.02
247 248 9.025041 ACTTTTCTTCTCTTCTTTTTCCTTCAA 57.975 29.630 0.00 0.00 0.00 2.69
248 249 9.295214 CTTTTCTTCTCTTCTTTTTCCTTCAAC 57.705 33.333 0.00 0.00 0.00 3.18
249 250 8.581253 TTTCTTCTCTTCTTTTTCCTTCAACT 57.419 30.769 0.00 0.00 0.00 3.16
250 251 7.793927 TCTTCTCTTCTTTTTCCTTCAACTC 57.206 36.000 0.00 0.00 0.00 3.01
251 252 7.338710 TCTTCTCTTCTTTTTCCTTCAACTCA 58.661 34.615 0.00 0.00 0.00 3.41
252 253 7.497249 TCTTCTCTTCTTTTTCCTTCAACTCAG 59.503 37.037 0.00 0.00 0.00 3.35
253 254 5.529060 TCTCTTCTTTTTCCTTCAACTCAGC 59.471 40.000 0.00 0.00 0.00 4.26
254 255 5.192927 TCTTCTTTTTCCTTCAACTCAGCA 58.807 37.500 0.00 0.00 0.00 4.41
255 256 5.652014 TCTTCTTTTTCCTTCAACTCAGCAA 59.348 36.000 0.00 0.00 0.00 3.91
256 257 5.248870 TCTTTTTCCTTCAACTCAGCAAC 57.751 39.130 0.00 0.00 0.00 4.17
257 258 4.704540 TCTTTTTCCTTCAACTCAGCAACA 59.295 37.500 0.00 0.00 0.00 3.33
258 259 5.184864 TCTTTTTCCTTCAACTCAGCAACAA 59.815 36.000 0.00 0.00 0.00 2.83
259 260 5.596836 TTTTCCTTCAACTCAGCAACAAT 57.403 34.783 0.00 0.00 0.00 2.71
260 261 6.707440 TTTTCCTTCAACTCAGCAACAATA 57.293 33.333 0.00 0.00 0.00 1.90
261 262 6.899393 TTTCCTTCAACTCAGCAACAATAT 57.101 33.333 0.00 0.00 0.00 1.28
262 263 7.994425 TTTCCTTCAACTCAGCAACAATATA 57.006 32.000 0.00 0.00 0.00 0.86
263 264 7.994425 TTCCTTCAACTCAGCAACAATATAA 57.006 32.000 0.00 0.00 0.00 0.98
264 265 8.579850 TTCCTTCAACTCAGCAACAATATAAT 57.420 30.769 0.00 0.00 0.00 1.28
265 266 9.679661 TTCCTTCAACTCAGCAACAATATAATA 57.320 29.630 0.00 0.00 0.00 0.98
266 267 9.109393 TCCTTCAACTCAGCAACAATATAATAC 57.891 33.333 0.00 0.00 0.00 1.89
267 268 9.113838 CCTTCAACTCAGCAACAATATAATACT 57.886 33.333 0.00 0.00 0.00 2.12
269 270 8.662781 TCAACTCAGCAACAATATAATACTCC 57.337 34.615 0.00 0.00 0.00 3.85
270 271 7.715249 TCAACTCAGCAACAATATAATACTCCC 59.285 37.037 0.00 0.00 0.00 4.30
271 272 7.380423 ACTCAGCAACAATATAATACTCCCT 57.620 36.000 0.00 0.00 0.00 4.20
272 273 7.445945 ACTCAGCAACAATATAATACTCCCTC 58.554 38.462 0.00 0.00 0.00 4.30
273 274 6.769512 TCAGCAACAATATAATACTCCCTCC 58.230 40.000 0.00 0.00 0.00 4.30
274 275 5.639506 CAGCAACAATATAATACTCCCTCCG 59.360 44.000 0.00 0.00 0.00 4.63
275 276 5.307196 AGCAACAATATAATACTCCCTCCGT 59.693 40.000 0.00 0.00 0.00 4.69
276 277 5.638234 GCAACAATATAATACTCCCTCCGTC 59.362 44.000 0.00 0.00 0.00 4.79
277 278 6.518537 GCAACAATATAATACTCCCTCCGTCT 60.519 42.308 0.00 0.00 0.00 4.18
278 279 6.837471 ACAATATAATACTCCCTCCGTCTC 57.163 41.667 0.00 0.00 0.00 3.36
279 280 6.312529 ACAATATAATACTCCCTCCGTCTCA 58.687 40.000 0.00 0.00 0.00 3.27
280 281 6.434652 ACAATATAATACTCCCTCCGTCTCAG 59.565 42.308 0.00 0.00 0.00 3.35
281 282 2.830651 AATACTCCCTCCGTCTCAGT 57.169 50.000 0.00 0.00 0.00 3.41
282 283 2.830651 ATACTCCCTCCGTCTCAGTT 57.169 50.000 0.00 0.00 0.00 3.16
283 284 2.599408 TACTCCCTCCGTCTCAGTTT 57.401 50.000 0.00 0.00 0.00 2.66
284 285 2.599408 ACTCCCTCCGTCTCAGTTTA 57.401 50.000 0.00 0.00 0.00 2.01
285 286 2.169330 ACTCCCTCCGTCTCAGTTTAC 58.831 52.381 0.00 0.00 0.00 2.01
286 287 2.168496 CTCCCTCCGTCTCAGTTTACA 58.832 52.381 0.00 0.00 0.00 2.41
287 288 2.561419 CTCCCTCCGTCTCAGTTTACAA 59.439 50.000 0.00 0.00 0.00 2.41
288 289 2.561419 TCCCTCCGTCTCAGTTTACAAG 59.439 50.000 0.00 0.00 0.00 3.16
289 290 2.299297 CCCTCCGTCTCAGTTTACAAGT 59.701 50.000 0.00 0.00 0.00 3.16
290 291 3.576648 CCTCCGTCTCAGTTTACAAGTC 58.423 50.000 0.00 0.00 0.00 3.01
291 292 3.256136 CCTCCGTCTCAGTTTACAAGTCT 59.744 47.826 0.00 0.00 0.00 3.24
292 293 4.262079 CCTCCGTCTCAGTTTACAAGTCTT 60.262 45.833 0.00 0.00 0.00 3.01
293 294 5.048224 CCTCCGTCTCAGTTTACAAGTCTTA 60.048 44.000 0.00 0.00 0.00 2.10
294 295 5.766222 TCCGTCTCAGTTTACAAGTCTTAC 58.234 41.667 0.00 0.00 0.00 2.34
295 296 4.615961 CCGTCTCAGTTTACAAGTCTTACG 59.384 45.833 0.00 0.00 0.00 3.18
296 297 4.088213 CGTCTCAGTTTACAAGTCTTACGC 59.912 45.833 0.00 0.00 0.00 4.42
297 298 4.088213 GTCTCAGTTTACAAGTCTTACGCG 59.912 45.833 3.53 3.53 0.00 6.01
298 299 3.968649 TCAGTTTACAAGTCTTACGCGT 58.031 40.909 19.17 19.17 0.00 6.01
299 300 5.049474 TCTCAGTTTACAAGTCTTACGCGTA 60.049 40.000 16.41 16.41 0.00 4.42
300 301 5.702865 TCAGTTTACAAGTCTTACGCGTAT 58.297 37.500 21.30 5.61 0.00 3.06
301 302 6.841119 TCAGTTTACAAGTCTTACGCGTATA 58.159 36.000 21.30 8.82 0.00 1.47
302 303 6.742718 TCAGTTTACAAGTCTTACGCGTATAC 59.257 38.462 21.30 20.04 0.00 1.47
303 304 6.021153 CAGTTTACAAGTCTTACGCGTATACC 60.021 42.308 21.30 10.39 0.00 2.73
304 305 5.818136 TTACAAGTCTTACGCGTATACCT 57.182 39.130 21.30 12.53 0.00 3.08
305 306 6.918892 TTACAAGTCTTACGCGTATACCTA 57.081 37.500 21.30 3.33 0.00 3.08
306 307 5.818136 ACAAGTCTTACGCGTATACCTAA 57.182 39.130 21.30 4.59 0.00 2.69
307 308 5.814783 ACAAGTCTTACGCGTATACCTAAG 58.185 41.667 21.30 15.04 0.00 2.18
308 309 5.210715 CAAGTCTTACGCGTATACCTAAGG 58.789 45.833 21.30 0.00 0.00 2.69
309 310 4.455606 AGTCTTACGCGTATACCTAAGGT 58.544 43.478 21.30 3.72 40.16 3.50
310 311 4.884164 AGTCTTACGCGTATACCTAAGGTT 59.116 41.667 21.30 4.42 37.09 3.50
311 312 4.972440 GTCTTACGCGTATACCTAAGGTTG 59.028 45.833 21.30 0.00 37.09 3.77
312 313 4.640201 TCTTACGCGTATACCTAAGGTTGT 59.360 41.667 21.30 0.00 37.09 3.32
313 314 3.427161 ACGCGTATACCTAAGGTTGTC 57.573 47.619 11.67 0.00 37.09 3.18
314 315 2.754552 ACGCGTATACCTAAGGTTGTCA 59.245 45.455 11.67 0.00 37.09 3.58
315 316 3.193267 ACGCGTATACCTAAGGTTGTCAA 59.807 43.478 11.67 0.00 37.09 3.18
316 317 4.142093 ACGCGTATACCTAAGGTTGTCAAT 60.142 41.667 11.67 0.00 37.09 2.57
317 318 4.807304 CGCGTATACCTAAGGTTGTCAATT 59.193 41.667 0.00 0.00 37.09 2.32
318 319 5.292589 CGCGTATACCTAAGGTTGTCAATTT 59.707 40.000 0.00 0.00 37.09 1.82
319 320 6.183360 CGCGTATACCTAAGGTTGTCAATTTT 60.183 38.462 0.00 0.00 37.09 1.82
320 321 7.010367 CGCGTATACCTAAGGTTGTCAATTTTA 59.990 37.037 0.00 0.00 37.09 1.52
321 322 8.833493 GCGTATACCTAAGGTTGTCAATTTTAT 58.167 33.333 0.00 0.00 37.09 1.40
325 326 7.462571 ACCTAAGGTTGTCAATTTTATCACC 57.537 36.000 0.00 0.00 27.29 4.02
326 327 7.007723 ACCTAAGGTTGTCAATTTTATCACCA 58.992 34.615 0.00 0.00 27.29 4.17
327 328 7.673926 ACCTAAGGTTGTCAATTTTATCACCAT 59.326 33.333 0.00 0.00 27.29 3.55
328 329 9.184523 CCTAAGGTTGTCAATTTTATCACCATA 57.815 33.333 0.00 0.00 0.00 2.74
437 438 9.912634 ATGACTTGTATTAGTTTGGTCAAATTG 57.087 29.630 0.00 0.00 36.16 2.32
438 439 9.126151 TGACTTGTATTAGTTTGGTCAAATTGA 57.874 29.630 0.00 0.00 32.36 2.57
439 440 9.394477 GACTTGTATTAGTTTGGTCAAATTGAC 57.606 33.333 17.16 17.16 46.23 3.18
449 450 2.629051 GTCAAATTGACGACCTAGGGG 58.371 52.381 14.81 7.16 37.67 4.79
450 451 2.027469 GTCAAATTGACGACCTAGGGGT 60.027 50.000 14.81 10.74 42.37 4.95
451 452 3.196254 GTCAAATTGACGACCTAGGGGTA 59.804 47.826 14.81 0.00 40.90 3.69
452 453 4.916984 GTCAAATTGACGACCTAGGGGTAC 60.917 50.000 14.81 2.61 40.90 3.34
466 467 4.781959 GTACGCGCACGCCCTGTA 62.782 66.667 5.73 3.39 45.53 2.74
467 468 4.053526 TACGCGCACGCCCTGTAA 62.054 61.111 5.73 0.00 45.53 2.41
468 469 3.570621 TACGCGCACGCCCTGTAAA 62.571 57.895 5.73 0.00 45.53 2.01
469 470 4.439472 CGCGCACGCCCTGTAAAC 62.439 66.667 8.75 0.00 37.98 2.01
470 471 4.097863 GCGCACGCCCTGTAAACC 62.098 66.667 0.30 0.00 34.56 3.27
471 472 3.784412 CGCACGCCCTGTAAACCG 61.784 66.667 0.00 0.00 0.00 4.44
472 473 2.357760 GCACGCCCTGTAAACCGA 60.358 61.111 0.00 0.00 0.00 4.69
473 474 2.388232 GCACGCCCTGTAAACCGAG 61.388 63.158 0.00 0.00 0.00 4.63
474 475 1.290955 CACGCCCTGTAAACCGAGA 59.709 57.895 0.00 0.00 0.00 4.04
475 476 0.320073 CACGCCCTGTAAACCGAGAA 60.320 55.000 0.00 0.00 0.00 2.87
476 477 0.393820 ACGCCCTGTAAACCGAGAAA 59.606 50.000 0.00 0.00 0.00 2.52
477 478 1.076332 CGCCCTGTAAACCGAGAAAG 58.924 55.000 0.00 0.00 0.00 2.62
478 479 1.337447 CGCCCTGTAAACCGAGAAAGA 60.337 52.381 0.00 0.00 0.00 2.52
479 480 2.347731 GCCCTGTAAACCGAGAAAGAG 58.652 52.381 0.00 0.00 0.00 2.85
480 481 2.935676 GCCCTGTAAACCGAGAAAGAGG 60.936 54.545 0.00 0.00 0.00 3.69
481 482 2.354805 CCCTGTAAACCGAGAAAGAGGG 60.355 54.545 0.00 0.00 33.23 4.30
482 483 2.565834 CCTGTAAACCGAGAAAGAGGGA 59.434 50.000 0.00 0.00 0.00 4.20
483 484 3.368531 CCTGTAAACCGAGAAAGAGGGAG 60.369 52.174 0.00 0.00 0.00 4.30
484 485 3.236896 TGTAAACCGAGAAAGAGGGAGT 58.763 45.455 0.00 0.00 0.00 3.85
485 486 4.410099 TGTAAACCGAGAAAGAGGGAGTA 58.590 43.478 0.00 0.00 0.00 2.59
486 487 5.021458 TGTAAACCGAGAAAGAGGGAGTAT 58.979 41.667 0.00 0.00 0.00 2.12
487 488 5.482878 TGTAAACCGAGAAAGAGGGAGTATT 59.517 40.000 0.00 0.00 0.00 1.89
488 489 5.500546 AAACCGAGAAAGAGGGAGTATTT 57.499 39.130 0.00 0.00 0.00 1.40
489 490 6.616237 AAACCGAGAAAGAGGGAGTATTTA 57.384 37.500 0.00 0.00 0.00 1.40
490 491 6.616237 AACCGAGAAAGAGGGAGTATTTAA 57.384 37.500 0.00 0.00 0.00 1.52
491 492 6.616237 ACCGAGAAAGAGGGAGTATTTAAA 57.384 37.500 0.00 0.00 0.00 1.52
492 493 7.196637 ACCGAGAAAGAGGGAGTATTTAAAT 57.803 36.000 5.89 5.89 0.00 1.40
493 494 7.273712 ACCGAGAAAGAGGGAGTATTTAAATC 58.726 38.462 3.39 0.00 0.00 2.17
494 495 6.706716 CCGAGAAAGAGGGAGTATTTAAATCC 59.293 42.308 3.39 0.61 0.00 3.01
495 496 7.419172 CCGAGAAAGAGGGAGTATTTAAATCCT 60.419 40.741 3.39 4.92 33.40 3.24
496 497 7.988028 CGAGAAAGAGGGAGTATTTAAATCCTT 59.012 37.037 3.39 0.00 33.40 3.36
502 503 9.393786 AGAGGGAGTATTTAAATCCTTATAGCA 57.606 33.333 3.39 0.00 33.40 3.49
504 505 9.965902 AGGGAGTATTTAAATCCTTATAGCATG 57.034 33.333 3.39 0.00 33.40 4.06
505 506 8.678199 GGGAGTATTTAAATCCTTATAGCATGC 58.322 37.037 10.51 10.51 33.40 4.06
506 507 9.454859 GGAGTATTTAAATCCTTATAGCATGCT 57.545 33.333 25.99 25.99 0.00 3.79
511 512 8.671384 TTTAAATCCTTATAGCATGCTTACGT 57.329 30.769 28.02 12.25 0.00 3.57
512 513 6.787085 AAATCCTTATAGCATGCTTACGTC 57.213 37.500 28.02 0.00 0.00 4.34
513 514 4.929819 TCCTTATAGCATGCTTACGTCA 57.070 40.909 28.02 6.82 0.00 4.35
514 515 4.617959 TCCTTATAGCATGCTTACGTCAC 58.382 43.478 28.02 0.00 0.00 3.67
515 516 3.741344 CCTTATAGCATGCTTACGTCACC 59.259 47.826 28.02 0.00 0.00 4.02
516 517 4.501571 CCTTATAGCATGCTTACGTCACCT 60.502 45.833 28.02 0.00 0.00 4.00
517 518 3.543680 ATAGCATGCTTACGTCACCTT 57.456 42.857 28.02 0.00 0.00 3.50
518 519 4.665833 ATAGCATGCTTACGTCACCTTA 57.334 40.909 28.02 2.72 0.00 2.69
519 520 3.543680 AGCATGCTTACGTCACCTTAT 57.456 42.857 16.30 0.00 0.00 1.73
520 521 3.873910 AGCATGCTTACGTCACCTTATT 58.126 40.909 16.30 0.00 0.00 1.40
521 522 5.018539 AGCATGCTTACGTCACCTTATTA 57.981 39.130 16.30 0.00 0.00 0.98
522 523 5.611374 AGCATGCTTACGTCACCTTATTAT 58.389 37.500 16.30 0.00 0.00 1.28
523 524 6.755206 AGCATGCTTACGTCACCTTATTATA 58.245 36.000 16.30 0.00 0.00 0.98
524 525 6.645415 AGCATGCTTACGTCACCTTATTATAC 59.355 38.462 16.30 0.00 0.00 1.47
525 526 6.645415 GCATGCTTACGTCACCTTATTATACT 59.355 38.462 11.37 0.00 0.00 2.12
526 527 7.170998 GCATGCTTACGTCACCTTATTATACTT 59.829 37.037 11.37 0.00 0.00 2.24
527 528 7.997107 TGCTTACGTCACCTTATTATACTTG 57.003 36.000 0.00 0.00 0.00 3.16
528 529 6.477688 TGCTTACGTCACCTTATTATACTTGC 59.522 38.462 0.00 0.00 0.00 4.01
529 530 6.700520 GCTTACGTCACCTTATTATACTTGCT 59.299 38.462 0.00 0.00 0.00 3.91
530 531 7.096147 GCTTACGTCACCTTATTATACTTGCTC 60.096 40.741 0.00 0.00 0.00 4.26
531 532 6.466885 ACGTCACCTTATTATACTTGCTCT 57.533 37.500 0.00 0.00 0.00 4.09
532 533 7.578310 ACGTCACCTTATTATACTTGCTCTA 57.422 36.000 0.00 0.00 0.00 2.43
533 534 8.004087 ACGTCACCTTATTATACTTGCTCTAA 57.996 34.615 0.00 0.00 0.00 2.10
534 535 8.136165 ACGTCACCTTATTATACTTGCTCTAAG 58.864 37.037 0.00 0.00 42.30 2.18
535 536 7.595502 CGTCACCTTATTATACTTGCTCTAAGG 59.404 40.741 0.00 0.00 40.84 2.69
536 537 8.639761 GTCACCTTATTATACTTGCTCTAAGGA 58.360 37.037 11.92 0.00 40.84 3.36
537 538 8.861086 TCACCTTATTATACTTGCTCTAAGGAG 58.139 37.037 11.92 5.49 40.84 3.69
538 539 8.643324 CACCTTATTATACTTGCTCTAAGGAGT 58.357 37.037 11.92 0.00 40.84 3.85
539 540 8.862085 ACCTTATTATACTTGCTCTAAGGAGTC 58.138 37.037 11.92 0.00 40.84 3.36
540 541 8.308207 CCTTATTATACTTGCTCTAAGGAGTCC 58.692 40.741 0.00 0.00 40.84 3.85
541 542 8.777578 TTATTATACTTGCTCTAAGGAGTCCA 57.222 34.615 12.86 0.00 40.84 4.02
542 543 7.863901 ATTATACTTGCTCTAAGGAGTCCAT 57.136 36.000 12.86 0.97 40.84 3.41
543 544 7.676683 TTATACTTGCTCTAAGGAGTCCATT 57.323 36.000 12.86 5.57 40.84 3.16
544 545 4.213564 ACTTGCTCTAAGGAGTCCATTG 57.786 45.455 12.86 0.00 40.84 2.82
545 546 2.698855 TGCTCTAAGGAGTCCATTGC 57.301 50.000 12.86 8.63 41.38 3.56
546 547 1.908619 TGCTCTAAGGAGTCCATTGCA 59.091 47.619 12.86 11.10 41.38 4.08
547 548 2.305635 TGCTCTAAGGAGTCCATTGCAA 59.694 45.455 12.86 0.00 41.38 4.08
548 549 2.680339 GCTCTAAGGAGTCCATTGCAAC 59.320 50.000 12.86 0.00 41.38 4.17
549 550 3.869912 GCTCTAAGGAGTCCATTGCAACA 60.870 47.826 12.86 0.00 41.38 3.33
550 551 3.674997 TCTAAGGAGTCCATTGCAACAC 58.325 45.455 12.86 0.00 0.00 3.32
551 552 1.238439 AAGGAGTCCATTGCAACACG 58.762 50.000 12.86 0.00 0.00 4.49
552 553 1.210155 GGAGTCCATTGCAACACGC 59.790 57.895 0.00 0.44 42.89 5.34
553 554 1.154413 GAGTCCATTGCAACACGCG 60.154 57.895 3.53 3.53 46.97 6.01
554 555 2.126888 GTCCATTGCAACACGCGG 60.127 61.111 12.47 1.27 46.97 6.46
555 556 3.361158 TCCATTGCAACACGCGGG 61.361 61.111 6.92 6.92 46.97 6.13
557 558 4.340019 CATTGCAACACGCGGGCA 62.340 61.111 9.12 10.91 46.97 5.36
558 559 3.372730 ATTGCAACACGCGGGCAT 61.373 55.556 9.12 0.00 46.97 4.40
559 560 2.043405 ATTGCAACACGCGGGCATA 61.043 52.632 9.12 5.13 46.97 3.14
560 561 1.383456 ATTGCAACACGCGGGCATAT 61.383 50.000 9.12 7.13 46.97 1.78
561 562 2.024588 GCAACACGCGGGCATATG 59.975 61.111 9.12 3.62 0.00 1.78
562 563 2.760159 GCAACACGCGGGCATATGT 61.760 57.895 9.12 0.00 0.00 2.29
563 564 1.433053 GCAACACGCGGGCATATGTA 61.433 55.000 9.12 0.00 0.00 2.29
564 565 0.303493 CAACACGCGGGCATATGTAC 59.697 55.000 9.12 0.00 0.00 2.90
565 566 0.177141 AACACGCGGGCATATGTACT 59.823 50.000 9.12 0.00 0.00 2.73
566 567 1.034356 ACACGCGGGCATATGTACTA 58.966 50.000 9.12 0.00 0.00 1.82
567 568 1.269413 ACACGCGGGCATATGTACTAC 60.269 52.381 9.12 0.00 0.00 2.73
568 569 1.000607 CACGCGGGCATATGTACTACT 60.001 52.381 12.47 0.00 0.00 2.57
569 570 1.684983 ACGCGGGCATATGTACTACTT 59.315 47.619 12.47 0.00 0.00 2.24
570 571 2.288030 ACGCGGGCATATGTACTACTTC 60.288 50.000 12.47 0.00 0.00 3.01
571 572 2.685100 GCGGGCATATGTACTACTTCC 58.315 52.381 4.29 0.00 0.00 3.46
572 573 2.299297 GCGGGCATATGTACTACTTCCT 59.701 50.000 4.29 0.00 0.00 3.36
573 574 3.614390 GCGGGCATATGTACTACTTCCTC 60.614 52.174 4.29 0.00 0.00 3.71
574 575 3.056749 CGGGCATATGTACTACTTCCTCC 60.057 52.174 4.29 0.00 0.00 4.30
575 576 3.056749 GGGCATATGTACTACTTCCTCCG 60.057 52.174 4.29 0.00 0.00 4.63
576 577 3.573110 GGCATATGTACTACTTCCTCCGT 59.427 47.826 4.29 0.00 0.00 4.69
577 578 4.321082 GGCATATGTACTACTTCCTCCGTC 60.321 50.000 4.29 0.00 0.00 4.79
578 579 4.519730 GCATATGTACTACTTCCTCCGTCT 59.480 45.833 4.29 0.00 0.00 4.18
579 580 5.335035 GCATATGTACTACTTCCTCCGTCTC 60.335 48.000 4.29 0.00 0.00 3.36
580 581 3.708403 TGTACTACTTCCTCCGTCTCA 57.292 47.619 0.00 0.00 0.00 3.27
581 582 4.232188 TGTACTACTTCCTCCGTCTCAT 57.768 45.455 0.00 0.00 0.00 2.90
582 583 5.363562 TGTACTACTTCCTCCGTCTCATA 57.636 43.478 0.00 0.00 0.00 2.15
583 584 5.748402 TGTACTACTTCCTCCGTCTCATAA 58.252 41.667 0.00 0.00 0.00 1.90
584 585 6.363065 TGTACTACTTCCTCCGTCTCATAAT 58.637 40.000 0.00 0.00 0.00 1.28
585 586 5.776173 ACTACTTCCTCCGTCTCATAATG 57.224 43.478 0.00 0.00 0.00 1.90
586 587 5.202004 ACTACTTCCTCCGTCTCATAATGT 58.798 41.667 0.00 0.00 0.00 2.71
587 588 4.392921 ACTTCCTCCGTCTCATAATGTG 57.607 45.455 0.00 0.00 0.00 3.21
588 589 4.023980 ACTTCCTCCGTCTCATAATGTGA 58.976 43.478 0.00 0.00 35.05 3.58
589 590 4.466370 ACTTCCTCCGTCTCATAATGTGAA 59.534 41.667 0.00 0.00 36.14 3.18
590 591 5.046591 ACTTCCTCCGTCTCATAATGTGAAA 60.047 40.000 0.00 0.00 36.14 2.69
591 592 4.755411 TCCTCCGTCTCATAATGTGAAAC 58.245 43.478 0.00 0.00 36.14 2.78
592 593 4.466370 TCCTCCGTCTCATAATGTGAAACT 59.534 41.667 0.00 0.00 38.04 2.66
593 594 5.046591 TCCTCCGTCTCATAATGTGAAACTT 60.047 40.000 0.00 0.00 38.04 2.66
594 595 5.643777 CCTCCGTCTCATAATGTGAAACTTT 59.356 40.000 0.00 0.00 38.04 2.66
595 596 6.149474 CCTCCGTCTCATAATGTGAAACTTTT 59.851 38.462 0.00 0.00 38.04 2.27
596 597 7.308589 CCTCCGTCTCATAATGTGAAACTTTTT 60.309 37.037 0.00 0.00 38.04 1.94
627 628 9.174166 ACACTACACTTGTGTAGAAAAATTTCT 57.826 29.630 33.99 12.61 45.49 2.52
655 656 9.415008 ACATTATGAGACAGAATGAGTACTACT 57.585 33.333 20.57 0.00 43.20 2.57
656 657 9.891828 CATTATGAGACAGAATGAGTACTACTC 57.108 37.037 11.92 9.04 43.20 2.59
657 658 6.952773 ATGAGACAGAATGAGTACTACTCC 57.047 41.667 12.79 0.00 44.44 3.85
658 659 5.194432 TGAGACAGAATGAGTACTACTCCC 58.806 45.833 12.79 3.75 44.44 4.30
659 660 5.044772 TGAGACAGAATGAGTACTACTCCCT 60.045 44.000 12.79 5.67 44.44 4.20
660 661 5.442391 AGACAGAATGAGTACTACTCCCTC 58.558 45.833 12.79 9.31 44.44 4.30
661 662 5.192923 AGACAGAATGAGTACTACTCCCTCT 59.807 44.000 12.79 11.08 44.44 3.69
662 663 5.197451 ACAGAATGAGTACTACTCCCTCTG 58.803 45.833 25.80 25.80 46.94 3.35
663 664 5.197451 CAGAATGAGTACTACTCCCTCTGT 58.803 45.833 22.60 4.45 44.44 3.41
664 665 6.358178 CAGAATGAGTACTACTCCCTCTGTA 58.642 44.000 22.60 5.19 44.44 2.74
665 666 6.829298 CAGAATGAGTACTACTCCCTCTGTAA 59.171 42.308 22.60 4.66 44.44 2.41
666 667 7.339721 CAGAATGAGTACTACTCCCTCTGTAAA 59.660 40.741 22.60 4.14 44.44 2.01
667 668 8.062536 AGAATGAGTACTACTCCCTCTGTAAAT 58.937 37.037 12.79 0.00 44.44 1.40
668 669 8.611051 AATGAGTACTACTCCCTCTGTAAATT 57.389 34.615 12.79 1.56 44.44 1.82
669 670 9.710818 AATGAGTACTACTCCCTCTGTAAATTA 57.289 33.333 12.79 0.00 44.44 1.40
670 671 9.710818 ATGAGTACTACTCCCTCTGTAAATTAA 57.289 33.333 12.79 0.00 44.44 1.40
671 672 9.710818 TGAGTACTACTCCCTCTGTAAATTAAT 57.289 33.333 12.79 0.00 44.44 1.40
681 682 9.841295 TCCCTCTGTAAATTAATATAAAAGCGT 57.159 29.630 0.00 0.00 0.00 5.07
731 732 9.490379 AAATGCTCTTATATTAGTTTACGGAGG 57.510 33.333 0.00 0.00 0.00 4.30
732 733 6.989659 TGCTCTTATATTAGTTTACGGAGGG 58.010 40.000 0.00 0.00 0.00 4.30
733 734 6.779049 TGCTCTTATATTAGTTTACGGAGGGA 59.221 38.462 0.00 0.00 0.00 4.20
734 735 7.039923 TGCTCTTATATTAGTTTACGGAGGGAG 60.040 40.741 0.00 0.00 0.00 4.30
735 736 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
736 737 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
737 738 9.289782 TCTTATATTAGTTTACGGAGGGAGTAC 57.710 37.037 0.00 0.00 0.00 2.73
738 739 9.294614 CTTATATTAGTTTACGGAGGGAGTACT 57.705 37.037 0.00 0.00 0.00 2.73
740 741 8.860780 ATATTAGTTTACGGAGGGAGTACTAG 57.139 38.462 0.00 0.00 0.00 2.57
755 756 7.118825 AGGGAGTACTAGTTTTTATTGAAACGC 59.881 37.037 0.00 0.00 42.78 4.84
833 834 4.829064 TTTTGTCACAAGCACATACTCC 57.171 40.909 0.00 0.00 0.00 3.85
845 851 3.862642 GCACATACTCCCTCGATTGATCC 60.863 52.174 0.00 0.00 0.00 3.36
852 858 4.164988 ACTCCCTCGATTGATCCAGAAATT 59.835 41.667 0.00 0.00 0.00 1.82
1524 1543 1.402194 CCTTCAGCAGACGTCTCACTC 60.402 57.143 16.96 5.34 0.00 3.51
1875 1894 2.602676 GCTTGGGCTAGGTGGACCA 61.603 63.158 0.00 0.00 43.64 4.02
1953 1972 0.258774 GTGGTCCCAACCCATATGCT 59.741 55.000 0.00 0.00 45.83 3.79
2353 2372 1.136828 ACCCTTCTGCTGGTGTTACA 58.863 50.000 0.00 0.00 32.36 2.41
2366 2385 5.673818 GCTGGTGTTACATGCTTTTACTAGC 60.674 44.000 9.18 9.18 41.59 3.42
2388 2408 3.342719 TGAGTGTGCTTGTTTGAAGTGA 58.657 40.909 0.00 0.00 0.00 3.41
2397 2417 6.697019 GTGCTTGTTTGAAGTGACATATTGTT 59.303 34.615 0.00 0.00 0.00 2.83
2596 2624 2.622942 TGCCTGGTTTGAACTAGCAAAG 59.377 45.455 2.09 0.00 38.33 2.77
2633 2661 0.597118 GCGATGTGGTGCTGCAAAAA 60.597 50.000 2.77 0.00 0.00 1.94
2650 2678 5.167845 GCAAAAATTGATTGGTCGGTATGT 58.832 37.500 6.42 0.00 0.00 2.29
2675 2703 6.039270 TGGTTGCTAGGTTAATGATGTATTGC 59.961 38.462 0.00 0.00 0.00 3.56
2676 2704 6.039270 GGTTGCTAGGTTAATGATGTATTGCA 59.961 38.462 0.00 0.00 0.00 4.08
2678 2706 8.783093 GTTGCTAGGTTAATGATGTATTGCATA 58.217 33.333 0.00 0.00 38.06 3.14
2765 2794 6.372937 TGTCGATACTTCAATTTTGTGGCATA 59.627 34.615 0.00 0.00 0.00 3.14
2820 2849 5.308825 CATCCCTCGCTCTAAATGGTATTT 58.691 41.667 0.00 0.00 0.00 1.40
2826 2855 7.066525 CCCTCGCTCTAAATGGTATTTTGTTTA 59.933 37.037 0.00 0.00 0.00 2.01
2932 2961 1.019278 TTGGACGATCGAGCTTTGCC 61.019 55.000 24.34 10.91 0.00 4.52
2933 2962 1.153549 GGACGATCGAGCTTTGCCT 60.154 57.895 24.34 0.00 0.00 4.75
2990 3019 1.001048 CTGTGTGTTGTTGCCCTGATG 60.001 52.381 0.00 0.00 0.00 3.07
3111 3140 1.248785 GGGCCCATGCTGATATGCTG 61.249 60.000 19.95 0.00 37.74 4.41
3184 3213 7.618502 TGAGGTTTTACATATATTGCGTTGT 57.381 32.000 0.00 0.00 0.00 3.32
3241 3343 7.805542 CGTTCCACATCACAAAAACATACAATA 59.194 33.333 0.00 0.00 0.00 1.90
3283 3385 3.507103 TTGATTCATGGATTGCGGTTG 57.493 42.857 0.00 0.00 0.00 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.047877 GTCCCAAACCAGTCGCCG 61.048 66.667 0.00 0.00 0.00 6.46
26 27 0.251341 AGGTGCATCTGGTCCCAAAC 60.251 55.000 0.00 0.00 0.00 2.93
27 28 0.038166 GAGGTGCATCTGGTCCCAAA 59.962 55.000 2.86 0.00 0.00 3.28
28 29 1.685224 GAGGTGCATCTGGTCCCAA 59.315 57.895 2.86 0.00 0.00 4.12
29 30 2.659063 CGAGGTGCATCTGGTCCCA 61.659 63.158 2.86 0.00 0.00 4.37
30 31 2.187946 CGAGGTGCATCTGGTCCC 59.812 66.667 2.86 0.00 0.00 4.46
31 32 1.448540 CACGAGGTGCATCTGGTCC 60.449 63.158 12.18 0.00 0.00 4.46
32 33 0.176680 ATCACGAGGTGCATCTGGTC 59.823 55.000 12.18 0.00 32.98 4.02
33 34 0.107993 CATCACGAGGTGCATCTGGT 60.108 55.000 9.07 9.07 32.98 4.00
34 35 0.107993 ACATCACGAGGTGCATCTGG 60.108 55.000 2.86 5.59 32.98 3.86
35 36 2.584492 TACATCACGAGGTGCATCTG 57.416 50.000 2.86 0.00 32.98 2.90
36 37 3.610040 TTTACATCACGAGGTGCATCT 57.390 42.857 0.00 0.00 32.98 2.90
37 38 4.882671 AATTTACATCACGAGGTGCATC 57.117 40.909 0.00 0.00 32.98 3.91
38 39 4.675146 GCAAATTTACATCACGAGGTGCAT 60.675 41.667 0.00 0.00 32.98 3.96
39 40 3.365868 GCAAATTTACATCACGAGGTGCA 60.366 43.478 0.00 0.00 32.98 4.57
40 41 3.171277 GCAAATTTACATCACGAGGTGC 58.829 45.455 0.00 0.00 32.98 5.01
41 42 4.158384 GTGCAAATTTACATCACGAGGTG 58.842 43.478 0.00 0.00 34.45 4.00
42 43 3.190535 GGTGCAAATTTACATCACGAGGT 59.809 43.478 0.00 0.00 0.00 3.85
43 44 3.727673 CGGTGCAAATTTACATCACGAGG 60.728 47.826 2.67 0.00 0.00 4.63
44 45 3.416277 CGGTGCAAATTTACATCACGAG 58.584 45.455 2.67 0.00 0.00 4.18
45 46 2.413502 GCGGTGCAAATTTACATCACGA 60.414 45.455 13.70 0.00 0.00 4.35
46 47 1.910819 GCGGTGCAAATTTACATCACG 59.089 47.619 2.67 5.82 0.00 4.35
47 48 1.910819 CGCGGTGCAAATTTACATCAC 59.089 47.619 0.00 3.71 0.00 3.06
48 49 1.807142 TCGCGGTGCAAATTTACATCA 59.193 42.857 6.13 0.00 0.00 3.07
49 50 2.440501 CTCGCGGTGCAAATTTACATC 58.559 47.619 6.13 0.00 0.00 3.06
50 51 1.132262 CCTCGCGGTGCAAATTTACAT 59.868 47.619 6.13 0.00 0.00 2.29
51 52 0.519519 CCTCGCGGTGCAAATTTACA 59.480 50.000 6.13 0.00 0.00 2.41
52 53 0.519961 ACCTCGCGGTGCAAATTTAC 59.480 50.000 6.13 0.00 43.51 2.01
53 54 2.935505 ACCTCGCGGTGCAAATTTA 58.064 47.368 6.13 0.00 43.51 1.40
54 55 3.758172 ACCTCGCGGTGCAAATTT 58.242 50.000 6.13 0.00 43.51 1.82
63 64 2.222640 CGTAAAATACAACACCTCGCGG 60.223 50.000 6.13 0.00 0.00 6.46
64 65 2.409378 ACGTAAAATACAACACCTCGCG 59.591 45.455 0.00 0.00 0.00 5.87
65 66 3.429543 TGACGTAAAATACAACACCTCGC 59.570 43.478 0.00 0.00 0.00 5.03
66 67 4.431986 CGTGACGTAAAATACAACACCTCG 60.432 45.833 0.00 0.00 33.77 4.63
67 68 4.681025 TCGTGACGTAAAATACAACACCTC 59.319 41.667 4.40 0.00 33.77 3.85
68 69 4.619973 TCGTGACGTAAAATACAACACCT 58.380 39.130 4.40 0.00 33.77 4.00
69 70 4.143263 CCTCGTGACGTAAAATACAACACC 60.143 45.833 4.40 0.00 33.77 4.16
70 71 4.681025 TCCTCGTGACGTAAAATACAACAC 59.319 41.667 4.40 0.00 33.89 3.32
71 72 4.869215 TCCTCGTGACGTAAAATACAACA 58.131 39.130 4.40 0.00 0.00 3.33
72 73 4.325472 CCTCCTCGTGACGTAAAATACAAC 59.675 45.833 4.40 0.00 0.00 3.32
73 74 4.487948 CCTCCTCGTGACGTAAAATACAA 58.512 43.478 4.40 0.00 0.00 2.41
74 75 3.674138 GCCTCCTCGTGACGTAAAATACA 60.674 47.826 4.40 0.00 0.00 2.29
75 76 2.856557 GCCTCCTCGTGACGTAAAATAC 59.143 50.000 4.40 0.00 0.00 1.89
76 77 2.159198 GGCCTCCTCGTGACGTAAAATA 60.159 50.000 4.40 0.00 0.00 1.40
77 78 1.405121 GGCCTCCTCGTGACGTAAAAT 60.405 52.381 4.40 0.00 0.00 1.82
78 79 0.037975 GGCCTCCTCGTGACGTAAAA 60.038 55.000 4.40 0.00 0.00 1.52
79 80 1.588082 GGCCTCCTCGTGACGTAAA 59.412 57.895 4.40 0.00 0.00 2.01
80 81 2.693762 CGGCCTCCTCGTGACGTAA 61.694 63.158 4.40 0.00 0.00 3.18
81 82 3.129502 CGGCCTCCTCGTGACGTA 61.130 66.667 4.40 0.00 0.00 3.57
86 87 4.933064 GATCGCGGCCTCCTCGTG 62.933 72.222 6.13 0.00 39.20 4.35
89 90 2.666596 AATTGGATCGCGGCCTCCTC 62.667 60.000 19.27 0.00 32.47 3.71
90 91 2.270874 AAATTGGATCGCGGCCTCCT 62.271 55.000 19.27 3.09 32.47 3.69
91 92 1.384222 AAAATTGGATCGCGGCCTCC 61.384 55.000 17.55 15.75 0.00 4.30
92 93 0.455815 AAAAATTGGATCGCGGCCTC 59.544 50.000 17.55 7.86 0.00 4.70
93 94 2.578683 AAAAATTGGATCGCGGCCT 58.421 47.368 17.55 0.00 0.00 5.19
108 109 4.155826 CAGACGGTCCATATGCAAGAAAAA 59.844 41.667 4.14 0.00 0.00 1.94
109 110 3.689161 CAGACGGTCCATATGCAAGAAAA 59.311 43.478 4.14 0.00 0.00 2.29
110 111 3.270027 CAGACGGTCCATATGCAAGAAA 58.730 45.455 4.14 0.00 0.00 2.52
111 112 2.236146 ACAGACGGTCCATATGCAAGAA 59.764 45.455 4.14 0.00 0.00 2.52
112 113 1.831106 ACAGACGGTCCATATGCAAGA 59.169 47.619 4.14 0.00 0.00 3.02
113 114 2.315925 ACAGACGGTCCATATGCAAG 57.684 50.000 4.14 0.00 0.00 4.01
114 115 2.355197 CAACAGACGGTCCATATGCAA 58.645 47.619 4.14 0.00 0.00 4.08
115 116 1.406751 CCAACAGACGGTCCATATGCA 60.407 52.381 4.14 0.00 0.00 3.96
116 117 1.134521 TCCAACAGACGGTCCATATGC 60.135 52.381 4.14 0.00 0.00 3.14
117 118 2.168521 ACTCCAACAGACGGTCCATATG 59.831 50.000 4.14 0.00 0.00 1.78
118 119 2.467880 ACTCCAACAGACGGTCCATAT 58.532 47.619 4.14 0.00 0.00 1.78
119 120 1.933021 ACTCCAACAGACGGTCCATA 58.067 50.000 4.14 0.00 0.00 2.74
120 121 1.825474 CTACTCCAACAGACGGTCCAT 59.175 52.381 4.14 0.00 0.00 3.41
121 122 1.254026 CTACTCCAACAGACGGTCCA 58.746 55.000 4.14 0.00 0.00 4.02
122 123 0.108756 GCTACTCCAACAGACGGTCC 60.109 60.000 4.14 0.00 0.00 4.46
123 124 0.456312 CGCTACTCCAACAGACGGTC 60.456 60.000 0.00 0.00 0.00 4.79
124 125 1.177256 ACGCTACTCCAACAGACGGT 61.177 55.000 0.00 0.00 0.00 4.83
125 126 0.038526 AACGCTACTCCAACAGACGG 60.039 55.000 0.00 0.00 0.00 4.79
126 127 1.779569 AAACGCTACTCCAACAGACG 58.220 50.000 0.00 0.00 0.00 4.18
151 152 2.224450 ACCTAACTTTTGGACCGTCTGG 60.224 50.000 0.00 0.00 42.84 3.86
152 153 3.121738 ACCTAACTTTTGGACCGTCTG 57.878 47.619 0.00 0.00 0.00 3.51
153 154 3.899980 AGTACCTAACTTTTGGACCGTCT 59.100 43.478 0.00 0.00 33.35 4.18
154 155 4.263018 AGTACCTAACTTTTGGACCGTC 57.737 45.455 0.00 0.00 33.35 4.79
155 156 4.694760 AAGTACCTAACTTTTGGACCGT 57.305 40.909 0.00 0.00 46.61 4.83
165 166 8.983702 TTGTCCAAATGTAAAAGTACCTAACT 57.016 30.769 0.00 0.00 41.49 2.24
166 167 9.836076 GATTGTCCAAATGTAAAAGTACCTAAC 57.164 33.333 0.00 0.00 0.00 2.34
167 168 9.802039 AGATTGTCCAAATGTAAAAGTACCTAA 57.198 29.630 0.00 0.00 0.00 2.69
169 170 9.975218 ATAGATTGTCCAAATGTAAAAGTACCT 57.025 29.630 0.00 0.00 0.00 3.08
173 174 9.308000 TCCAATAGATTGTCCAAATGTAAAAGT 57.692 29.630 1.78 0.00 36.06 2.66
174 175 9.793252 CTCCAATAGATTGTCCAAATGTAAAAG 57.207 33.333 1.78 0.00 36.06 2.27
175 176 9.527157 TCTCCAATAGATTGTCCAAATGTAAAA 57.473 29.630 1.78 0.00 36.06 1.52
176 177 9.699410 ATCTCCAATAGATTGTCCAAATGTAAA 57.301 29.630 1.78 0.00 42.62 2.01
177 178 9.123902 CATCTCCAATAGATTGTCCAAATGTAA 57.876 33.333 1.78 0.00 42.62 2.41
178 179 7.229306 GCATCTCCAATAGATTGTCCAAATGTA 59.771 37.037 1.78 0.00 42.62 2.29
179 180 6.040166 GCATCTCCAATAGATTGTCCAAATGT 59.960 38.462 1.78 0.00 42.62 2.71
180 181 6.264744 AGCATCTCCAATAGATTGTCCAAATG 59.735 38.462 1.78 0.71 42.62 2.32
181 182 6.371278 AGCATCTCCAATAGATTGTCCAAAT 58.629 36.000 1.78 0.00 42.62 2.32
182 183 5.759059 AGCATCTCCAATAGATTGTCCAAA 58.241 37.500 1.78 0.00 42.62 3.28
183 184 5.371526 GAGCATCTCCAATAGATTGTCCAA 58.628 41.667 1.78 0.00 42.62 3.53
184 185 4.965814 GAGCATCTCCAATAGATTGTCCA 58.034 43.478 1.78 0.00 42.62 4.02
200 201 4.160626 AGTGGGTTGTAGACTTAGAGCATC 59.839 45.833 0.00 0.00 0.00 3.91
201 202 4.097418 AGTGGGTTGTAGACTTAGAGCAT 58.903 43.478 0.00 0.00 0.00 3.79
202 203 3.507411 AGTGGGTTGTAGACTTAGAGCA 58.493 45.455 0.00 0.00 0.00 4.26
203 204 4.538746 AAGTGGGTTGTAGACTTAGAGC 57.461 45.455 0.00 0.00 0.00 4.09
204 205 6.760291 AGAAAAGTGGGTTGTAGACTTAGAG 58.240 40.000 0.00 0.00 29.71 2.43
205 206 6.742559 AGAAAAGTGGGTTGTAGACTTAGA 57.257 37.500 0.00 0.00 29.71 2.10
206 207 7.217906 AGAAGAAAAGTGGGTTGTAGACTTAG 58.782 38.462 0.00 0.00 29.71 2.18
207 208 7.070821 AGAGAAGAAAAGTGGGTTGTAGACTTA 59.929 37.037 0.00 0.00 29.71 2.24
208 209 6.002653 AGAAGAAAAGTGGGTTGTAGACTT 57.997 37.500 0.00 0.00 0.00 3.01
209 210 5.367060 AGAGAAGAAAAGTGGGTTGTAGACT 59.633 40.000 0.00 0.00 0.00 3.24
210 211 5.612351 AGAGAAGAAAAGTGGGTTGTAGAC 58.388 41.667 0.00 0.00 0.00 2.59
211 212 5.888982 AGAGAAGAAAAGTGGGTTGTAGA 57.111 39.130 0.00 0.00 0.00 2.59
212 213 6.292150 AGAAGAGAAGAAAAGTGGGTTGTAG 58.708 40.000 0.00 0.00 0.00 2.74
213 214 6.248569 AGAAGAGAAGAAAAGTGGGTTGTA 57.751 37.500 0.00 0.00 0.00 2.41
214 215 5.117406 AGAAGAGAAGAAAAGTGGGTTGT 57.883 39.130 0.00 0.00 0.00 3.32
215 216 6.456795 AAAGAAGAGAAGAAAAGTGGGTTG 57.543 37.500 0.00 0.00 0.00 3.77
216 217 7.363880 GGAAAAAGAAGAGAAGAAAAGTGGGTT 60.364 37.037 0.00 0.00 0.00 4.11
217 218 6.096987 GGAAAAAGAAGAGAAGAAAAGTGGGT 59.903 38.462 0.00 0.00 0.00 4.51
218 219 6.322456 AGGAAAAAGAAGAGAAGAAAAGTGGG 59.678 38.462 0.00 0.00 0.00 4.61
219 220 7.340122 AGGAAAAAGAAGAGAAGAAAAGTGG 57.660 36.000 0.00 0.00 0.00 4.00
220 221 8.462016 TGAAGGAAAAAGAAGAGAAGAAAAGTG 58.538 33.333 0.00 0.00 0.00 3.16
221 222 8.581253 TGAAGGAAAAAGAAGAGAAGAAAAGT 57.419 30.769 0.00 0.00 0.00 2.66
222 223 9.295214 GTTGAAGGAAAAAGAAGAGAAGAAAAG 57.705 33.333 0.00 0.00 0.00 2.27
223 224 9.025041 AGTTGAAGGAAAAAGAAGAGAAGAAAA 57.975 29.630 0.00 0.00 0.00 2.29
224 225 8.581253 AGTTGAAGGAAAAAGAAGAGAAGAAA 57.419 30.769 0.00 0.00 0.00 2.52
225 226 7.829211 TGAGTTGAAGGAAAAAGAAGAGAAGAA 59.171 33.333 0.00 0.00 0.00 2.52
226 227 7.338710 TGAGTTGAAGGAAAAAGAAGAGAAGA 58.661 34.615 0.00 0.00 0.00 2.87
227 228 7.559590 TGAGTTGAAGGAAAAAGAAGAGAAG 57.440 36.000 0.00 0.00 0.00 2.85
228 229 6.038714 GCTGAGTTGAAGGAAAAAGAAGAGAA 59.961 38.462 0.00 0.00 0.00 2.87
229 230 5.529060 GCTGAGTTGAAGGAAAAAGAAGAGA 59.471 40.000 0.00 0.00 0.00 3.10
230 231 5.297776 TGCTGAGTTGAAGGAAAAAGAAGAG 59.702 40.000 0.00 0.00 0.00 2.85
231 232 5.192927 TGCTGAGTTGAAGGAAAAAGAAGA 58.807 37.500 0.00 0.00 0.00 2.87
232 233 5.505173 TGCTGAGTTGAAGGAAAAAGAAG 57.495 39.130 0.00 0.00 0.00 2.85
233 234 5.184864 TGTTGCTGAGTTGAAGGAAAAAGAA 59.815 36.000 0.00 0.00 0.00 2.52
234 235 4.704540 TGTTGCTGAGTTGAAGGAAAAAGA 59.295 37.500 0.00 0.00 0.00 2.52
235 236 4.997565 TGTTGCTGAGTTGAAGGAAAAAG 58.002 39.130 0.00 0.00 0.00 2.27
236 237 5.398603 TTGTTGCTGAGTTGAAGGAAAAA 57.601 34.783 0.00 0.00 0.00 1.94
237 238 5.596836 ATTGTTGCTGAGTTGAAGGAAAA 57.403 34.783 0.00 0.00 0.00 2.29
238 239 6.899393 ATATTGTTGCTGAGTTGAAGGAAA 57.101 33.333 0.00 0.00 0.00 3.13
239 240 7.994425 TTATATTGTTGCTGAGTTGAAGGAA 57.006 32.000 0.00 0.00 0.00 3.36
240 241 9.109393 GTATTATATTGTTGCTGAGTTGAAGGA 57.891 33.333 0.00 0.00 0.00 3.36
241 242 9.113838 AGTATTATATTGTTGCTGAGTTGAAGG 57.886 33.333 0.00 0.00 0.00 3.46
243 244 9.109393 GGAGTATTATATTGTTGCTGAGTTGAA 57.891 33.333 0.00 0.00 0.00 2.69
244 245 7.715249 GGGAGTATTATATTGTTGCTGAGTTGA 59.285 37.037 0.00 0.00 0.00 3.18
245 246 7.716998 AGGGAGTATTATATTGTTGCTGAGTTG 59.283 37.037 0.00 0.00 0.00 3.16
246 247 7.806180 AGGGAGTATTATATTGTTGCTGAGTT 58.194 34.615 0.00 0.00 0.00 3.01
247 248 7.380423 AGGGAGTATTATATTGTTGCTGAGT 57.620 36.000 0.00 0.00 0.00 3.41
248 249 6.876257 GGAGGGAGTATTATATTGTTGCTGAG 59.124 42.308 0.00 0.00 0.00 3.35
249 250 6.518369 CGGAGGGAGTATTATATTGTTGCTGA 60.518 42.308 0.00 0.00 0.00 4.26
250 251 5.639506 CGGAGGGAGTATTATATTGTTGCTG 59.360 44.000 0.00 0.00 0.00 4.41
251 252 5.307196 ACGGAGGGAGTATTATATTGTTGCT 59.693 40.000 0.00 0.00 0.00 3.91
252 253 5.548406 ACGGAGGGAGTATTATATTGTTGC 58.452 41.667 0.00 0.00 0.00 4.17
253 254 6.994221 AGACGGAGGGAGTATTATATTGTTG 58.006 40.000 0.00 0.00 0.00 3.33
254 255 6.781014 TGAGACGGAGGGAGTATTATATTGTT 59.219 38.462 0.00 0.00 0.00 2.83
255 256 6.312529 TGAGACGGAGGGAGTATTATATTGT 58.687 40.000 0.00 0.00 0.00 2.71
256 257 6.434652 ACTGAGACGGAGGGAGTATTATATTG 59.565 42.308 0.00 0.00 0.00 1.90
257 258 6.553857 ACTGAGACGGAGGGAGTATTATATT 58.446 40.000 0.00 0.00 0.00 1.28
258 259 6.142259 ACTGAGACGGAGGGAGTATTATAT 57.858 41.667 0.00 0.00 0.00 0.86
259 260 5.579753 ACTGAGACGGAGGGAGTATTATA 57.420 43.478 0.00 0.00 0.00 0.98
260 261 4.456662 ACTGAGACGGAGGGAGTATTAT 57.543 45.455 0.00 0.00 0.00 1.28
261 262 3.947612 ACTGAGACGGAGGGAGTATTA 57.052 47.619 0.00 0.00 0.00 0.98
262 263 2.830651 ACTGAGACGGAGGGAGTATT 57.169 50.000 0.00 0.00 0.00 1.89
263 264 2.830651 AACTGAGACGGAGGGAGTAT 57.169 50.000 0.00 0.00 0.00 2.12
264 265 2.599408 AAACTGAGACGGAGGGAGTA 57.401 50.000 0.00 0.00 0.00 2.59
265 266 2.169330 GTAAACTGAGACGGAGGGAGT 58.831 52.381 0.00 0.00 0.00 3.85
266 267 2.168496 TGTAAACTGAGACGGAGGGAG 58.832 52.381 0.00 0.00 0.00 4.30
267 268 2.297698 TGTAAACTGAGACGGAGGGA 57.702 50.000 0.00 0.00 0.00 4.20
268 269 2.299297 ACTTGTAAACTGAGACGGAGGG 59.701 50.000 0.00 0.00 0.00 4.30
269 270 3.256136 AGACTTGTAAACTGAGACGGAGG 59.744 47.826 0.00 0.00 0.00 4.30
270 271 4.506886 AGACTTGTAAACTGAGACGGAG 57.493 45.455 0.00 0.00 0.00 4.63
271 272 4.931661 AAGACTTGTAAACTGAGACGGA 57.068 40.909 0.00 0.00 0.00 4.69
272 273 4.615961 CGTAAGACTTGTAAACTGAGACGG 59.384 45.833 0.00 0.00 43.02 4.79
273 274 4.088213 GCGTAAGACTTGTAAACTGAGACG 59.912 45.833 0.00 0.00 43.02 4.18
274 275 4.088213 CGCGTAAGACTTGTAAACTGAGAC 59.912 45.833 0.00 0.00 43.02 3.36
275 276 4.224433 CGCGTAAGACTTGTAAACTGAGA 58.776 43.478 0.00 0.00 43.02 3.27
276 277 3.979495 ACGCGTAAGACTTGTAAACTGAG 59.021 43.478 11.67 0.00 43.02 3.35
277 278 3.968649 ACGCGTAAGACTTGTAAACTGA 58.031 40.909 11.67 0.00 43.02 3.41
278 279 6.021153 GGTATACGCGTAAGACTTGTAAACTG 60.021 42.308 24.55 0.00 43.02 3.16
279 280 6.030228 GGTATACGCGTAAGACTTGTAAACT 58.970 40.000 24.55 4.16 43.02 2.66
280 281 6.030228 AGGTATACGCGTAAGACTTGTAAAC 58.970 40.000 24.55 9.34 43.02 2.01
281 282 6.194796 AGGTATACGCGTAAGACTTGTAAA 57.805 37.500 24.55 0.00 43.02 2.01
282 283 5.818136 AGGTATACGCGTAAGACTTGTAA 57.182 39.130 24.55 0.00 43.02 2.41
283 284 6.017934 CCTTAGGTATACGCGTAAGACTTGTA 60.018 42.308 24.55 13.30 38.42 2.41
284 285 5.220931 CCTTAGGTATACGCGTAAGACTTGT 60.221 44.000 24.55 14.15 38.42 3.16
285 286 5.210715 CCTTAGGTATACGCGTAAGACTTG 58.789 45.833 24.55 15.08 38.42 3.16
286 287 4.884164 ACCTTAGGTATACGCGTAAGACTT 59.116 41.667 24.55 20.95 38.42 3.01
287 288 4.455606 ACCTTAGGTATACGCGTAAGACT 58.544 43.478 24.55 21.20 38.42 3.24
288 289 4.820284 ACCTTAGGTATACGCGTAAGAC 57.180 45.455 24.55 22.16 38.42 3.01
289 290 4.640201 ACAACCTTAGGTATACGCGTAAGA 59.360 41.667 24.55 11.68 38.42 2.10
290 291 4.925068 ACAACCTTAGGTATACGCGTAAG 58.075 43.478 24.55 16.16 33.12 2.34
291 292 4.397730 TGACAACCTTAGGTATACGCGTAA 59.602 41.667 24.55 9.95 33.12 3.18
292 293 3.944650 TGACAACCTTAGGTATACGCGTA 59.055 43.478 22.94 22.94 33.12 4.42
293 294 2.754552 TGACAACCTTAGGTATACGCGT 59.245 45.455 19.17 19.17 33.12 6.01
294 295 3.425577 TGACAACCTTAGGTATACGCG 57.574 47.619 3.55 3.53 33.12 6.01
295 296 6.673154 AAATTGACAACCTTAGGTATACGC 57.327 37.500 3.55 0.00 33.12 4.42
299 300 9.185680 GGTGATAAAATTGACAACCTTAGGTAT 57.814 33.333 3.55 0.00 33.12 2.73
300 301 8.164733 TGGTGATAAAATTGACAACCTTAGGTA 58.835 33.333 3.55 0.00 33.12 3.08
301 302 7.007723 TGGTGATAAAATTGACAACCTTAGGT 58.992 34.615 0.00 0.00 37.65 3.08
302 303 7.461182 TGGTGATAAAATTGACAACCTTAGG 57.539 36.000 0.00 0.00 0.00 2.69
411 412 9.912634 CAATTTGACCAAACTAATACAAGTCAT 57.087 29.630 0.00 0.00 33.21 3.06
412 413 9.126151 TCAATTTGACCAAACTAATACAAGTCA 57.874 29.630 0.00 0.00 32.51 3.41
413 414 9.394477 GTCAATTTGACCAAACTAATACAAGTC 57.606 33.333 17.07 0.00 41.37 3.01
414 415 8.073768 CGTCAATTTGACCAAACTAATACAAGT 58.926 33.333 20.87 0.00 44.20 3.16
415 416 8.286800 TCGTCAATTTGACCAAACTAATACAAG 58.713 33.333 20.87 4.88 44.20 3.16
416 417 8.071368 GTCGTCAATTTGACCAAACTAATACAA 58.929 33.333 20.87 0.00 44.20 2.41
417 418 7.577979 GTCGTCAATTTGACCAAACTAATACA 58.422 34.615 20.87 0.00 44.20 2.29
428 429 5.201262 ACCCCTAGGTCGTCAATTTGACC 62.201 52.174 20.87 10.15 46.45 4.02
429 430 2.027469 ACCCCTAGGTCGTCAATTTGAC 60.027 50.000 17.76 17.76 46.45 3.18
430 431 2.262637 ACCCCTAGGTCGTCAATTTGA 58.737 47.619 8.29 0.00 46.45 2.69
431 432 2.781681 ACCCCTAGGTCGTCAATTTG 57.218 50.000 8.29 0.00 46.45 2.32
432 433 2.167075 CGTACCCCTAGGTCGTCAATTT 59.833 50.000 8.29 0.00 46.45 1.82
433 434 1.753073 CGTACCCCTAGGTCGTCAATT 59.247 52.381 8.29 0.00 46.45 2.32
434 435 1.396653 CGTACCCCTAGGTCGTCAAT 58.603 55.000 8.29 0.00 46.45 2.57
435 436 1.315257 GCGTACCCCTAGGTCGTCAA 61.315 60.000 8.29 0.00 46.45 3.18
436 437 1.750399 GCGTACCCCTAGGTCGTCA 60.750 63.158 8.29 0.00 46.45 4.35
437 438 2.828128 CGCGTACCCCTAGGTCGTC 61.828 68.421 8.29 3.46 46.45 4.20
438 439 2.825836 CGCGTACCCCTAGGTCGT 60.826 66.667 8.29 6.00 46.45 4.34
439 440 4.261781 GCGCGTACCCCTAGGTCG 62.262 72.222 8.43 8.12 46.45 4.79
440 441 3.142838 TGCGCGTACCCCTAGGTC 61.143 66.667 8.43 0.00 46.45 3.85
442 443 4.564116 CGTGCGCGTACCCCTAGG 62.564 72.222 21.71 0.06 40.04 3.02
449 450 4.781959 TACAGGGCGTGCGCGTAC 62.782 66.667 22.18 17.94 43.06 3.67
450 451 3.570621 TTTACAGGGCGTGCGCGTA 62.571 57.895 22.18 0.00 43.06 4.42
451 452 4.973055 TTTACAGGGCGTGCGCGT 62.973 61.111 22.18 2.94 43.06 6.01
452 453 4.439472 GTTTACAGGGCGTGCGCG 62.439 66.667 16.86 16.86 43.06 6.86
453 454 4.097863 GGTTTACAGGGCGTGCGC 62.098 66.667 7.17 8.17 41.06 6.09
454 455 3.784412 CGGTTTACAGGGCGTGCG 61.784 66.667 7.17 0.00 0.00 5.34
455 456 2.357760 TCGGTTTACAGGGCGTGC 60.358 61.111 7.17 0.00 0.00 5.34
456 457 0.320073 TTCTCGGTTTACAGGGCGTG 60.320 55.000 5.50 5.50 0.00 5.34
457 458 0.393820 TTTCTCGGTTTACAGGGCGT 59.606 50.000 0.00 0.00 0.00 5.68
458 459 1.076332 CTTTCTCGGTTTACAGGGCG 58.924 55.000 0.00 0.00 0.00 6.13
459 460 2.347731 CTCTTTCTCGGTTTACAGGGC 58.652 52.381 0.00 0.00 0.00 5.19
460 461 2.354805 CCCTCTTTCTCGGTTTACAGGG 60.355 54.545 0.00 0.00 33.59 4.45
461 462 2.565834 TCCCTCTTTCTCGGTTTACAGG 59.434 50.000 0.00 0.00 0.00 4.00
462 463 3.258622 ACTCCCTCTTTCTCGGTTTACAG 59.741 47.826 0.00 0.00 0.00 2.74
463 464 3.236896 ACTCCCTCTTTCTCGGTTTACA 58.763 45.455 0.00 0.00 0.00 2.41
464 465 3.957591 ACTCCCTCTTTCTCGGTTTAC 57.042 47.619 0.00 0.00 0.00 2.01
465 466 6.616237 AAATACTCCCTCTTTCTCGGTTTA 57.384 37.500 0.00 0.00 0.00 2.01
466 467 5.500546 AAATACTCCCTCTTTCTCGGTTT 57.499 39.130 0.00 0.00 0.00 3.27
467 468 6.616237 TTAAATACTCCCTCTTTCTCGGTT 57.384 37.500 0.00 0.00 0.00 4.44
468 469 6.616237 TTTAAATACTCCCTCTTTCTCGGT 57.384 37.500 0.00 0.00 0.00 4.69
469 470 6.706716 GGATTTAAATACTCCCTCTTTCTCGG 59.293 42.308 2.93 0.00 0.00 4.63
470 471 7.501844 AGGATTTAAATACTCCCTCTTTCTCG 58.498 38.462 7.14 0.00 0.00 4.04
476 477 9.393786 TGCTATAAGGATTTAAATACTCCCTCT 57.606 33.333 13.44 0.33 0.00 3.69
478 479 9.965902 CATGCTATAAGGATTTAAATACTCCCT 57.034 33.333 13.44 6.85 0.00 4.20
479 480 8.678199 GCATGCTATAAGGATTTAAATACTCCC 58.322 37.037 13.44 4.59 0.00 4.30
480 481 9.454859 AGCATGCTATAAGGATTTAAATACTCC 57.545 33.333 21.21 5.84 0.00 3.85
485 486 9.284968 ACGTAAGCATGCTATAAGGATTTAAAT 57.715 29.630 23.00 0.00 45.62 1.40
486 487 8.671384 ACGTAAGCATGCTATAAGGATTTAAA 57.329 30.769 23.00 0.00 45.62 1.52
487 488 7.929245 TGACGTAAGCATGCTATAAGGATTTAA 59.071 33.333 23.00 0.00 45.62 1.52
488 489 7.384115 GTGACGTAAGCATGCTATAAGGATTTA 59.616 37.037 23.00 2.96 45.62 1.40
489 490 6.202954 GTGACGTAAGCATGCTATAAGGATTT 59.797 38.462 23.00 4.09 45.62 2.17
490 491 5.696724 GTGACGTAAGCATGCTATAAGGATT 59.303 40.000 23.00 4.92 45.62 3.01
491 492 5.230942 GTGACGTAAGCATGCTATAAGGAT 58.769 41.667 23.00 5.76 45.62 3.24
492 493 4.500887 GGTGACGTAAGCATGCTATAAGGA 60.501 45.833 23.00 1.12 45.62 3.36
493 494 3.741344 GGTGACGTAAGCATGCTATAAGG 59.259 47.826 23.00 16.68 45.62 2.69
494 495 4.621991 AGGTGACGTAAGCATGCTATAAG 58.378 43.478 23.00 18.15 45.62 1.73
495 496 4.665833 AGGTGACGTAAGCATGCTATAA 57.334 40.909 23.00 6.95 45.62 0.98
496 497 4.665833 AAGGTGACGTAAGCATGCTATA 57.334 40.909 23.00 12.63 45.62 1.31
497 498 3.543680 AAGGTGACGTAAGCATGCTAT 57.456 42.857 23.00 13.67 45.62 2.97
498 499 4.665833 ATAAGGTGACGTAAGCATGCTA 57.334 40.909 23.00 6.70 45.62 3.49
499 500 3.543680 ATAAGGTGACGTAAGCATGCT 57.456 42.857 16.30 16.30 45.62 3.79
500 501 5.924475 ATAATAAGGTGACGTAAGCATGC 57.076 39.130 10.51 10.51 45.62 4.06
501 502 8.487970 CAAGTATAATAAGGTGACGTAAGCATG 58.512 37.037 4.63 0.00 45.62 4.06
502 503 7.170998 GCAAGTATAATAAGGTGACGTAAGCAT 59.829 37.037 4.63 0.00 45.62 3.79
503 504 6.477688 GCAAGTATAATAAGGTGACGTAAGCA 59.522 38.462 4.63 0.00 45.62 3.91
504 505 6.700520 AGCAAGTATAATAAGGTGACGTAAGC 59.299 38.462 0.00 0.00 45.62 3.09
506 507 8.004087 AGAGCAAGTATAATAAGGTGACGTAA 57.996 34.615 0.00 0.00 0.00 3.18
507 508 7.578310 AGAGCAAGTATAATAAGGTGACGTA 57.422 36.000 0.00 0.00 0.00 3.57
508 509 6.466885 AGAGCAAGTATAATAAGGTGACGT 57.533 37.500 0.00 0.00 0.00 4.34
509 510 7.595502 CCTTAGAGCAAGTATAATAAGGTGACG 59.404 40.741 0.00 0.00 36.22 4.35
510 511 8.639761 TCCTTAGAGCAAGTATAATAAGGTGAC 58.360 37.037 8.27 0.00 40.02 3.67
511 512 8.777578 TCCTTAGAGCAAGTATAATAAGGTGA 57.222 34.615 8.27 0.00 40.02 4.02
512 513 8.643324 ACTCCTTAGAGCAAGTATAATAAGGTG 58.357 37.037 8.27 8.41 44.65 4.00
513 514 8.785184 ACTCCTTAGAGCAAGTATAATAAGGT 57.215 34.615 8.27 0.00 44.65 3.50
514 515 8.308207 GGACTCCTTAGAGCAAGTATAATAAGG 58.692 40.741 0.00 0.00 44.65 2.69
515 516 8.861086 TGGACTCCTTAGAGCAAGTATAATAAG 58.139 37.037 0.00 0.00 44.65 1.73
516 517 8.777578 TGGACTCCTTAGAGCAAGTATAATAA 57.222 34.615 0.00 0.00 44.65 1.40
517 518 8.958060 ATGGACTCCTTAGAGCAAGTATAATA 57.042 34.615 0.00 0.00 44.65 0.98
518 519 7.863901 ATGGACTCCTTAGAGCAAGTATAAT 57.136 36.000 0.00 0.00 44.65 1.28
519 520 7.500992 CAATGGACTCCTTAGAGCAAGTATAA 58.499 38.462 0.00 0.00 44.65 0.98
520 521 6.463049 GCAATGGACTCCTTAGAGCAAGTATA 60.463 42.308 0.00 0.00 44.65 1.47
521 522 5.686124 GCAATGGACTCCTTAGAGCAAGTAT 60.686 44.000 0.00 0.00 44.65 2.12
522 523 4.383118 GCAATGGACTCCTTAGAGCAAGTA 60.383 45.833 0.00 0.00 44.65 2.24
523 524 3.620966 GCAATGGACTCCTTAGAGCAAGT 60.621 47.826 0.00 0.00 44.65 3.16
524 525 2.941720 GCAATGGACTCCTTAGAGCAAG 59.058 50.000 0.00 0.00 44.65 4.01
525 526 2.305635 TGCAATGGACTCCTTAGAGCAA 59.694 45.455 0.00 0.00 44.65 3.91
526 527 1.908619 TGCAATGGACTCCTTAGAGCA 59.091 47.619 0.00 0.00 44.65 4.26
527 528 2.680339 GTTGCAATGGACTCCTTAGAGC 59.320 50.000 0.59 0.00 44.65 4.09
528 529 3.686726 GTGTTGCAATGGACTCCTTAGAG 59.313 47.826 0.59 0.00 46.36 2.43
529 530 3.674997 GTGTTGCAATGGACTCCTTAGA 58.325 45.455 0.59 0.00 0.00 2.10
530 531 2.416547 CGTGTTGCAATGGACTCCTTAG 59.583 50.000 0.59 0.00 0.00 2.18
531 532 2.422597 CGTGTTGCAATGGACTCCTTA 58.577 47.619 0.59 0.00 0.00 2.69
532 533 1.238439 CGTGTTGCAATGGACTCCTT 58.762 50.000 0.59 0.00 0.00 3.36
533 534 1.237285 GCGTGTTGCAATGGACTCCT 61.237 55.000 0.59 0.00 45.45 3.69
534 535 1.210155 GCGTGTTGCAATGGACTCC 59.790 57.895 0.59 0.00 45.45 3.85
535 536 1.154413 CGCGTGTTGCAATGGACTC 60.154 57.895 0.59 0.00 46.97 3.36
536 537 2.616330 CCGCGTGTTGCAATGGACT 61.616 57.895 0.59 0.00 46.97 3.85
537 538 2.126888 CCGCGTGTTGCAATGGAC 60.127 61.111 0.59 0.00 46.97 4.02
538 539 3.361158 CCCGCGTGTTGCAATGGA 61.361 61.111 0.59 0.00 46.97 3.41
540 541 2.263771 TATGCCCGCGTGTTGCAATG 62.264 55.000 13.39 0.00 46.97 2.82
541 542 1.383456 ATATGCCCGCGTGTTGCAAT 61.383 50.000 13.39 6.92 46.97 3.56
542 543 2.043405 ATATGCCCGCGTGTTGCAA 61.043 52.632 13.39 0.00 46.97 4.08
543 544 2.437537 ATATGCCCGCGTGTTGCA 60.438 55.556 12.03 12.03 46.97 4.08
544 545 1.433053 TACATATGCCCGCGTGTTGC 61.433 55.000 4.92 2.50 41.47 4.17
545 546 0.303493 GTACATATGCCCGCGTGTTG 59.697 55.000 4.92 0.00 0.00 3.33
546 547 0.177141 AGTACATATGCCCGCGTGTT 59.823 50.000 4.92 0.00 0.00 3.32
547 548 1.034356 TAGTACATATGCCCGCGTGT 58.966 50.000 4.92 3.93 0.00 4.49
548 549 1.000607 AGTAGTACATATGCCCGCGTG 60.001 52.381 4.92 0.00 0.00 5.34
549 550 1.325355 AGTAGTACATATGCCCGCGT 58.675 50.000 4.92 0.00 0.00 6.01
550 551 2.325761 GAAGTAGTACATATGCCCGCG 58.674 52.381 1.58 0.00 0.00 6.46
551 552 2.299297 AGGAAGTAGTACATATGCCCGC 59.701 50.000 1.58 0.00 0.00 6.13
552 553 3.056749 GGAGGAAGTAGTACATATGCCCG 60.057 52.174 1.58 0.00 0.00 6.13
553 554 3.056749 CGGAGGAAGTAGTACATATGCCC 60.057 52.174 1.58 0.00 0.00 5.36
554 555 3.573110 ACGGAGGAAGTAGTACATATGCC 59.427 47.826 1.58 0.00 0.00 4.40
555 556 4.519730 AGACGGAGGAAGTAGTACATATGC 59.480 45.833 1.58 0.00 0.00 3.14
556 557 5.763698 TGAGACGGAGGAAGTAGTACATATG 59.236 44.000 0.00 0.00 0.00 1.78
557 558 5.938279 TGAGACGGAGGAAGTAGTACATAT 58.062 41.667 2.52 0.00 0.00 1.78
558 559 5.363562 TGAGACGGAGGAAGTAGTACATA 57.636 43.478 2.52 0.00 0.00 2.29
559 560 4.232188 TGAGACGGAGGAAGTAGTACAT 57.768 45.455 2.52 0.00 0.00 2.29
560 561 3.708403 TGAGACGGAGGAAGTAGTACA 57.292 47.619 2.52 0.00 0.00 2.90
561 562 6.262720 ACATTATGAGACGGAGGAAGTAGTAC 59.737 42.308 0.00 0.00 0.00 2.73
562 563 6.262496 CACATTATGAGACGGAGGAAGTAGTA 59.738 42.308 0.00 0.00 0.00 1.82
563 564 5.067936 CACATTATGAGACGGAGGAAGTAGT 59.932 44.000 0.00 0.00 0.00 2.73
564 565 5.299531 TCACATTATGAGACGGAGGAAGTAG 59.700 44.000 0.00 0.00 31.91 2.57
565 566 5.198207 TCACATTATGAGACGGAGGAAGTA 58.802 41.667 0.00 0.00 31.91 2.24
566 567 4.023980 TCACATTATGAGACGGAGGAAGT 58.976 43.478 0.00 0.00 31.91 3.01
567 568 4.655762 TCACATTATGAGACGGAGGAAG 57.344 45.455 0.00 0.00 31.91 3.46
568 569 5.046591 AGTTTCACATTATGAGACGGAGGAA 60.047 40.000 0.00 0.00 45.15 3.36
569 570 4.466370 AGTTTCACATTATGAGACGGAGGA 59.534 41.667 0.00 0.00 45.15 3.71
570 571 4.759782 AGTTTCACATTATGAGACGGAGG 58.240 43.478 0.00 0.00 45.15 4.30
571 572 6.727824 AAAGTTTCACATTATGAGACGGAG 57.272 37.500 0.00 0.00 45.15 4.63
572 573 7.504924 AAAAAGTTTCACATTATGAGACGGA 57.495 32.000 0.00 0.00 45.15 4.69
629 630 9.415008 AGTAGTACTCATTCTGTCTCATAATGT 57.585 33.333 0.00 0.00 32.32 2.71
630 631 9.891828 GAGTAGTACTCATTCTGTCTCATAATG 57.108 37.037 22.85 0.00 44.45 1.90
631 632 9.073475 GGAGTAGTACTCATTCTGTCTCATAAT 57.927 37.037 27.41 0.00 46.79 1.28
632 633 7.502895 GGGAGTAGTACTCATTCTGTCTCATAA 59.497 40.741 27.41 0.00 46.79 1.90
633 634 6.999272 GGGAGTAGTACTCATTCTGTCTCATA 59.001 42.308 27.41 0.00 46.79 2.15
634 635 5.830991 GGGAGTAGTACTCATTCTGTCTCAT 59.169 44.000 27.41 0.00 46.79 2.90
635 636 5.044772 AGGGAGTAGTACTCATTCTGTCTCA 60.045 44.000 27.41 0.00 46.79 3.27
636 637 5.442391 AGGGAGTAGTACTCATTCTGTCTC 58.558 45.833 27.41 9.95 46.79 3.36
637 638 5.192923 AGAGGGAGTAGTACTCATTCTGTCT 59.807 44.000 27.41 16.72 46.79 3.41
638 639 5.298276 CAGAGGGAGTAGTACTCATTCTGTC 59.702 48.000 31.31 19.81 46.79 3.51
639 640 5.197451 CAGAGGGAGTAGTACTCATTCTGT 58.803 45.833 31.31 21.83 46.79 3.41
640 641 5.766150 CAGAGGGAGTAGTACTCATTCTG 57.234 47.826 29.42 29.42 46.79 3.02
641 642 5.459982 ACAGAGGGAGTAGTACTCATTCT 57.540 43.478 27.41 23.95 46.79 2.40
642 643 7.642082 TTTACAGAGGGAGTAGTACTCATTC 57.358 40.000 27.41 22.49 46.79 2.67
643 644 8.611051 AATTTACAGAGGGAGTAGTACTCATT 57.389 34.615 27.41 16.64 46.79 2.57
644 645 9.710818 TTAATTTACAGAGGGAGTAGTACTCAT 57.289 33.333 27.41 17.34 46.79 2.90
645 646 9.710818 ATTAATTTACAGAGGGAGTAGTACTCA 57.289 33.333 27.41 7.92 46.79 3.41
655 656 9.841295 ACGCTTTTATATTAATTTACAGAGGGA 57.159 29.630 0.00 0.00 0.00 4.20
705 706 9.490379 CCTCCGTAAACTAATATAAGAGCATTT 57.510 33.333 0.00 0.00 0.00 2.32
706 707 8.095169 CCCTCCGTAAACTAATATAAGAGCATT 58.905 37.037 0.00 0.00 0.00 3.56
707 708 7.453752 TCCCTCCGTAAACTAATATAAGAGCAT 59.546 37.037 0.00 0.00 0.00 3.79
708 709 6.779049 TCCCTCCGTAAACTAATATAAGAGCA 59.221 38.462 0.00 0.00 0.00 4.26
709 710 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
710 711 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
711 712 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
712 713 9.294614 AGTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
714 715 9.950496 CTAGTACTCCCTCCGTAAACTAATATA 57.050 37.037 0.00 0.00 0.00 0.86
715 716 8.443979 ACTAGTACTCCCTCCGTAAACTAATAT 58.556 37.037 0.00 0.00 0.00 1.28
716 717 7.806180 ACTAGTACTCCCTCCGTAAACTAATA 58.194 38.462 0.00 0.00 0.00 0.98
717 718 6.667661 ACTAGTACTCCCTCCGTAAACTAAT 58.332 40.000 0.00 0.00 0.00 1.73
718 719 6.067217 ACTAGTACTCCCTCCGTAAACTAA 57.933 41.667 0.00 0.00 0.00 2.24
719 720 5.700402 ACTAGTACTCCCTCCGTAAACTA 57.300 43.478 0.00 0.00 0.00 2.24
720 721 4.582973 ACTAGTACTCCCTCCGTAAACT 57.417 45.455 0.00 0.00 0.00 2.66
721 722 5.651387 AAACTAGTACTCCCTCCGTAAAC 57.349 43.478 0.00 0.00 0.00 2.01
722 723 6.670695 AAAAACTAGTACTCCCTCCGTAAA 57.329 37.500 0.00 0.00 0.00 2.01
723 724 7.961326 ATAAAAACTAGTACTCCCTCCGTAA 57.039 36.000 0.00 0.00 0.00 3.18
724 725 7.615365 TCAATAAAAACTAGTACTCCCTCCGTA 59.385 37.037 0.00 0.00 0.00 4.02
725 726 6.438425 TCAATAAAAACTAGTACTCCCTCCGT 59.562 38.462 0.00 0.00 0.00 4.69
726 727 6.870769 TCAATAAAAACTAGTACTCCCTCCG 58.129 40.000 0.00 0.00 0.00 4.63
727 728 8.944029 GTTTCAATAAAAACTAGTACTCCCTCC 58.056 37.037 0.00 0.00 36.44 4.30
728 729 8.654215 CGTTTCAATAAAAACTAGTACTCCCTC 58.346 37.037 0.00 0.00 37.06 4.30
729 730 7.118825 GCGTTTCAATAAAAACTAGTACTCCCT 59.881 37.037 0.00 0.00 37.06 4.20
730 731 7.095102 TGCGTTTCAATAAAAACTAGTACTCCC 60.095 37.037 0.00 0.00 37.06 4.30
731 732 7.743400 GTGCGTTTCAATAAAAACTAGTACTCC 59.257 37.037 0.00 0.00 37.06 3.85
732 733 7.473411 CGTGCGTTTCAATAAAAACTAGTACTC 59.527 37.037 0.00 0.00 37.06 2.59
733 734 7.042523 ACGTGCGTTTCAATAAAAACTAGTACT 60.043 33.333 0.00 0.00 37.06 2.73
734 735 7.065283 ACGTGCGTTTCAATAAAAACTAGTAC 58.935 34.615 0.00 0.00 37.06 2.73
735 736 7.042858 TGACGTGCGTTTCAATAAAAACTAGTA 60.043 33.333 0.00 0.00 37.06 1.82
736 737 6.051646 ACGTGCGTTTCAATAAAAACTAGT 57.948 33.333 0.00 0.00 37.06 2.57
737 738 6.130723 TGACGTGCGTTTCAATAAAAACTAG 58.869 36.000 0.00 0.00 37.06 2.57
738 739 6.045698 TGACGTGCGTTTCAATAAAAACTA 57.954 33.333 0.00 0.00 37.06 2.24
739 740 4.911053 TGACGTGCGTTTCAATAAAAACT 58.089 34.783 0.00 0.00 37.06 2.66
740 741 5.607858 TTGACGTGCGTTTCAATAAAAAC 57.392 34.783 0.00 0.00 36.09 2.43
755 756 5.615581 CACGAGTTGTCTAAAAATTGACGTG 59.384 40.000 0.00 0.00 39.59 4.49
830 831 3.827008 TTTCTGGATCAATCGAGGGAG 57.173 47.619 0.00 0.00 33.98 4.30
831 832 4.410228 AGAATTTCTGGATCAATCGAGGGA 59.590 41.667 0.00 0.00 33.98 4.20
832 833 4.514441 CAGAATTTCTGGATCAATCGAGGG 59.486 45.833 17.09 0.00 40.71 4.30
833 834 4.024218 GCAGAATTTCTGGATCAATCGAGG 60.024 45.833 24.09 0.00 44.43 4.63
845 851 2.100991 GCGGCCGCAGAATTTCTG 59.899 61.111 43.55 19.92 46.90 3.02
1524 1543 1.533625 TCCCAACAAAGATCTTGCGG 58.466 50.000 9.17 7.18 0.00 5.69
1698 1717 5.656213 TTACCTTAGTTGAGTCCACTAGC 57.344 43.478 4.43 0.00 0.00 3.42
1875 1894 1.133388 CCATATTGCCCACCCATCTGT 60.133 52.381 0.00 0.00 0.00 3.41
1923 1942 1.532794 GGGACCACCAAATGCACCA 60.533 57.895 0.00 0.00 39.85 4.17
1953 1972 1.965935 CCATGGACGATGGCATGTTA 58.034 50.000 5.56 0.00 45.58 2.41
1980 1999 2.672996 CCCAAACCAGCTCCACCG 60.673 66.667 0.00 0.00 0.00 4.94
2292 2311 1.102978 GTGGCACATTGGGGTACATC 58.897 55.000 13.86 0.00 44.52 3.06
2353 2372 3.686726 GCACACTCAGCTAGTAAAAGCAT 59.313 43.478 0.00 0.00 45.30 3.79
2366 2385 3.374988 TCACTTCAAACAAGCACACTCAG 59.625 43.478 0.00 0.00 0.00 3.35
2612 2640 1.855213 TTTGCAGCACCACATCGCTC 61.855 55.000 0.00 0.00 35.96 5.03
2633 2661 3.644966 ACCACATACCGACCAATCAAT 57.355 42.857 0.00 0.00 0.00 2.57
2650 2678 6.039270 GCAATACATCATTAACCTAGCAACCA 59.961 38.462 0.00 0.00 0.00 3.67
2737 2765 6.434596 CCACAAAATTGAAGTATCGACACAA 58.565 36.000 0.00 0.00 0.00 3.33
2740 2768 4.517075 TGCCACAAAATTGAAGTATCGACA 59.483 37.500 0.00 0.00 0.00 4.35
2765 2794 2.560542 TCGTGCCAAAATAAACATGGCT 59.439 40.909 16.11 0.00 45.20 4.75
2784 2813 3.185330 CGAGGGATGCATCAGATTATCG 58.815 50.000 27.25 20.04 0.00 2.92
2932 2961 8.586570 TGTTAGCATAACCAAAATCAACAAAG 57.413 30.769 0.00 0.00 0.00 2.77
2933 2962 8.417106 TCTGTTAGCATAACCAAAATCAACAAA 58.583 29.630 0.00 0.00 0.00 2.83
2990 3019 7.611213 ATCAACTACAAACCAGCATAGTTAC 57.389 36.000 0.00 0.00 36.06 2.50
3111 3140 9.353999 GACATTAACAAACATCTAAAATGGTCC 57.646 33.333 0.00 0.00 0.00 4.46
3184 3213 9.715121 AATGTCTAGTTTCAGGTTTTACGATAA 57.285 29.630 0.00 0.00 0.00 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.