Multiple sequence alignment - TraesCS3B01G250300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G250300 chr3B 100.000 3695 0 0 1 3695 399902992 399899298 0.000000e+00 6824.0
1 TraesCS3B01G250300 chr3B 94.304 158 8 1 3350 3506 622078989 622078832 1.330000e-59 241.0
2 TraesCS3B01G250300 chr3B 91.111 90 6 2 2844 2932 423806102 423806190 1.800000e-23 121.0
3 TraesCS3B01G250300 chr3D 94.346 3148 115 36 1 3110 320504229 320507351 0.000000e+00 4769.0
4 TraesCS3B01G250300 chr3D 92.929 198 14 0 3498 3695 320507508 320507705 4.670000e-74 289.0
5 TraesCS3B01G250300 chr3A 93.287 2875 128 33 17 2855 405627863 405625018 0.000000e+00 4180.0
6 TraesCS3B01G250300 chr3A 91.111 180 16 0 3498 3677 405624593 405624414 1.030000e-60 244.0
7 TraesCS3B01G250300 chr3A 91.275 149 10 2 2987 3135 405624736 405624591 2.250000e-47 200.0
8 TraesCS3B01G250300 chr3A 90.323 93 8 1 2847 2938 444462656 444462748 1.800000e-23 121.0
9 TraesCS3B01G250300 chr7B 97.727 176 4 0 3179 3354 375607877 375607702 1.670000e-78 303.0
10 TraesCS3B01G250300 chr7B 95.513 156 6 1 3350 3504 561730518 561730363 7.920000e-62 248.0
11 TraesCS3B01G250300 chr6B 97.727 176 4 0 3179 3354 289915414 289915239 1.670000e-78 303.0
12 TraesCS3B01G250300 chr5B 97.727 176 4 0 3179 3354 409548875 409548700 1.670000e-78 303.0
13 TraesCS3B01G250300 chr5B 95.455 154 6 1 3350 3502 30632858 30632705 1.030000e-60 244.0
14 TraesCS3B01G250300 chr5B 90.426 94 8 1 2846 2938 681819314 681819407 5.010000e-24 122.0
15 TraesCS3B01G250300 chr4D 97.727 176 4 0 3179 3354 329878600 329878775 1.670000e-78 303.0
16 TraesCS3B01G250300 chr4D 90.625 96 8 1 2847 2941 494042469 494042374 3.870000e-25 126.0
17 TraesCS3B01G250300 chr4D 89.583 96 9 1 2847 2941 12354795 12354700 1.800000e-23 121.0
18 TraesCS3B01G250300 chr4B 97.727 176 4 0 3179 3354 328009289 328009114 1.670000e-78 303.0
19 TraesCS3B01G250300 chr4B 97.727 176 3 1 3179 3354 270663604 270663778 6.000000e-78 302.0
20 TraesCS3B01G250300 chr2B 97.714 175 4 0 3179 3353 22084450 22084276 6.000000e-78 302.0
21 TraesCS3B01G250300 chr2B 94.904 157 6 2 3350 3505 492618577 492618422 1.030000e-60 244.0
22 TraesCS3B01G250300 chr2B 89.474 95 9 1 2848 2941 7566846 7566752 6.480000e-23 119.0
23 TraesCS3B01G250300 chr6D 97.159 176 5 0 3179 3354 468312648 468312473 7.760000e-77 298.0
24 TraesCS3B01G250300 chr2D 97.159 176 5 0 3179 3354 610329668 610329843 7.760000e-77 298.0
25 TraesCS3B01G250300 chr2D 98.013 151 2 1 3350 3499 374124222 374124372 1.020000e-65 261.0
26 TraesCS3B01G250300 chr5D 96.732 153 4 1 3350 3501 108135206 108135054 1.700000e-63 254.0
27 TraesCS3B01G250300 chr5D 96.689 151 3 2 3351 3499 495422779 495422929 2.200000e-62 250.0
28 TraesCS3B01G250300 chr1B 96.129 155 5 1 3350 3503 14825607 14825761 6.130000e-63 252.0
29 TraesCS3B01G250300 chr7D 96.104 154 4 1 3350 3501 396856009 396856162 2.200000e-62 250.0
30 TraesCS3B01G250300 chr7D 91.398 93 7 1 2847 2938 57100327 57100419 3.870000e-25 126.0
31 TraesCS3B01G250300 chr5A 93.252 163 11 0 2268 2430 573988375 573988213 1.330000e-59 241.0
32 TraesCS3B01G250300 chr5A 93.617 47 3 0 3137 3183 631719498 631719544 1.840000e-08 71.3
33 TraesCS3B01G250300 chr2A 88.202 178 19 1 3498 3673 755440675 755440852 1.040000e-50 211.0
34 TraesCS3B01G250300 chr6A 91.398 93 7 1 2847 2938 442400368 442400460 3.870000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G250300 chr3B 399899298 399902992 3694 True 6824.000000 6824 100.0000 1 3695 1 chr3B.!!$R1 3694
1 TraesCS3B01G250300 chr3D 320504229 320507705 3476 False 2529.000000 4769 93.6375 1 3695 2 chr3D.!!$F1 3694
2 TraesCS3B01G250300 chr3A 405624414 405627863 3449 True 1541.333333 4180 91.8910 17 3677 3 chr3A.!!$R1 3660

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
551 563 0.179045 ATTCGAGATCCAAAGGCCCG 60.179 55.0 0.00 0.0 0.0 6.13 F
976 996 0.885879 TACAGGCGTGTCGAGAACAT 59.114 50.0 16.53 0.0 40.8 2.71 F
1118 1141 1.178276 CCCTTCGCTCTAGACACTGT 58.822 55.0 0.00 0.0 0.0 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1923 1946 0.035152 TGAGCATGACGAAAGCCCAT 60.035 50.0 0.00 0.0 0.00 4.00 R
2463 2486 0.758734 CCATGGCTCTTATCCCGTCA 59.241 55.0 0.00 0.0 0.00 4.35 R
2932 2983 0.895530 CTTAGGACACGCTTCCTCCA 59.104 55.0 8.67 0.0 42.98 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 37 9.383519 GAGGTATATCTTTCTGACAATTGAACA 57.616 33.333 13.59 10.72 0.00 3.18
47 49 7.335171 TCTGACAATTGAACAGATATGTTCCTG 59.665 37.037 25.98 21.56 45.41 3.86
171 174 7.704271 TGATGACGGTAGTAGAAATAGTCAAG 58.296 38.462 0.00 0.00 39.97 3.02
172 175 7.338703 TGATGACGGTAGTAGAAATAGTCAAGT 59.661 37.037 0.00 0.00 39.97 3.16
259 264 6.060028 TCAGTTTGCTGAGTTTCACATAAC 57.940 37.500 0.00 0.00 45.94 1.89
260 265 5.822519 TCAGTTTGCTGAGTTTCACATAACT 59.177 36.000 0.00 0.00 45.94 2.24
261 266 6.318648 TCAGTTTGCTGAGTTTCACATAACTT 59.681 34.615 0.00 0.00 45.94 2.66
262 267 6.974622 CAGTTTGCTGAGTTTCACATAACTTT 59.025 34.615 0.00 0.00 45.28 2.66
263 268 7.489113 CAGTTTGCTGAGTTTCACATAACTTTT 59.511 33.333 0.00 0.00 45.28 2.27
264 269 8.034804 AGTTTGCTGAGTTTCACATAACTTTTT 58.965 29.630 0.00 0.00 38.43 1.94
297 302 4.675063 TTTGAAAAGGAGGATAAGCCCT 57.325 40.909 0.00 0.00 39.77 5.19
304 309 1.772156 AGGATAAGCCCTCCCAGCC 60.772 63.158 0.00 0.00 37.37 4.85
307 312 1.772156 ATAAGCCCTCCCAGCCTCC 60.772 63.158 0.00 0.00 0.00 4.30
312 317 3.801997 CCTCCCAGCCTCCGCATT 61.802 66.667 0.00 0.00 37.52 3.56
339 344 6.428159 AGCGAGTTTCACATAAATCTTGTCTT 59.572 34.615 0.00 0.00 0.00 3.01
342 347 7.893236 CGAGTTTCACATAAATCTTGTCTTACG 59.107 37.037 0.00 0.00 0.00 3.18
387 392 4.607955 TCACCAGAGAACGCTAATAATCG 58.392 43.478 0.00 0.00 0.00 3.34
392 397 6.030849 CCAGAGAACGCTAATAATCGGATAG 58.969 44.000 0.00 0.00 0.00 2.08
429 434 9.804758 AAGAACAAGATATAACCTAGAAGTTCG 57.195 33.333 0.00 0.00 37.35 3.95
551 563 0.179045 ATTCGAGATCCAAAGGCCCG 60.179 55.000 0.00 0.00 0.00 6.13
634 646 4.409247 GGTCTTGGGGTTGACATAGTAGAT 59.591 45.833 0.00 0.00 35.11 1.98
636 648 3.838244 TGGGGTTGACATAGTAGATGC 57.162 47.619 0.00 0.00 0.00 3.91
640 652 3.432186 GGGTTGACATAGTAGATGCTGCA 60.432 47.826 4.13 4.13 0.00 4.41
710 722 3.240134 GAGGGCTTCGTCCAGCACA 62.240 63.158 8.59 0.00 46.68 4.57
768 783 4.269183 TCAAGTTGCAAAGGTCAGAAAGA 58.731 39.130 0.00 0.00 0.00 2.52
799 814 1.209127 CGTCGCCGGAATTTGCTTT 59.791 52.632 5.05 0.00 0.00 3.51
805 820 3.108144 CGCCGGAATTTGCTTTGATTAG 58.892 45.455 5.05 0.00 0.00 1.73
811 826 5.622007 CGGAATTTGCTTTGATTAGCTGGAA 60.622 40.000 0.00 0.00 41.76 3.53
881 897 4.576873 TGATCGATGCCTATAGCTAGCTAC 59.423 45.833 26.41 14.13 44.23 3.58
948 964 1.959985 CCACCCATGCAACTGTTGTAA 59.040 47.619 20.57 10.78 0.00 2.41
952 968 2.095059 CCCATGCAACTGTTGTAAGCTC 60.095 50.000 20.57 4.75 0.00 4.09
968 988 1.071567 GCTCGAAGTACAGGCGTGTC 61.072 60.000 16.53 7.99 38.19 3.67
976 996 0.885879 TACAGGCGTGTCGAGAACAT 59.114 50.000 16.53 0.00 40.80 2.71
977 997 0.885879 ACAGGCGTGTCGAGAACATA 59.114 50.000 6.15 0.00 40.80 2.29
978 998 1.476891 ACAGGCGTGTCGAGAACATAT 59.523 47.619 6.15 0.00 40.80 1.78
979 999 2.094182 ACAGGCGTGTCGAGAACATATT 60.094 45.455 6.15 0.00 40.80 1.28
1053 1076 1.396653 CCATGGCCATCAAGTTCTCC 58.603 55.000 17.61 0.00 0.00 3.71
1118 1141 1.178276 CCCTTCGCTCTAGACACTGT 58.822 55.000 0.00 0.00 0.00 3.55
1263 1286 1.306642 ACTTCTGCGACCTCGACGAT 61.307 55.000 0.00 0.00 43.02 3.73
1317 1340 1.878948 GCTACGGACGAGGAGATAGCT 60.879 57.143 0.00 0.00 33.75 3.32
1329 1352 3.850095 GATAGCTCTCACCGCCGCC 62.850 68.421 0.00 0.00 0.00 6.13
1961 1984 3.976701 CTGCTGGCTACAACCCGGG 62.977 68.421 22.25 22.25 0.00 5.73
1998 2021 3.382832 CTGACCGTCGCCTCCCTT 61.383 66.667 0.00 0.00 0.00 3.95
2265 2288 1.536662 AGACTTCACCCGAGGCCTT 60.537 57.895 6.77 0.00 0.00 4.35
2410 2433 1.403647 CGTTCCTGATGCAACCGAGTA 60.404 52.381 0.00 0.00 0.00 2.59
2463 2486 1.153901 CATCGACGCCAACTACGGT 60.154 57.895 0.00 0.00 34.00 4.83
2619 2642 2.110213 GTGGTGACGAGCAACCCA 59.890 61.111 0.00 0.00 31.36 4.51
2699 2722 6.924913 TCCTATCTGGGACTCTTGATAATG 57.075 41.667 0.00 0.00 36.20 1.90
2700 2723 6.385443 TCCTATCTGGGACTCTTGATAATGT 58.615 40.000 0.00 0.00 36.20 2.71
2702 2725 6.933521 CCTATCTGGGACTCTTGATAATGTTG 59.066 42.308 0.00 0.00 0.00 3.33
2789 2833 8.568676 TTATTTTGGACGGAATGAGTATGAAA 57.431 30.769 0.00 0.00 0.00 2.69
2857 2903 4.015084 TGGAGTTCTAAGTACTTCCTCCG 58.985 47.826 24.07 9.29 39.87 4.63
2859 2905 4.096231 GGAGTTCTAAGTACTTCCTCCGTC 59.904 50.000 12.39 3.59 0.00 4.79
2864 2910 1.558233 AGTACTTCCTCCGTCCCAAG 58.442 55.000 0.00 0.00 0.00 3.61
2882 2928 7.159372 GTCCCAAGATAAGTGTCTCAACTTTA 58.841 38.462 0.00 0.00 40.77 1.85
2941 2992 6.012745 ACATTTATATTGGGATGGAGGAAGC 58.987 40.000 0.00 0.00 0.00 3.86
2942 2993 2.867109 ATATTGGGATGGAGGAAGCG 57.133 50.000 0.00 0.00 0.00 4.68
2959 3010 3.470645 AGCGTGTCCTAAGTCAACTTT 57.529 42.857 0.00 0.00 37.40 2.66
3021 3318 4.832266 TCTAGATTCTCTGATTCCTCTGCC 59.168 45.833 0.00 0.00 0.00 4.85
3029 3326 3.118112 TCTGATTCCTCTGCCAGAAATCC 60.118 47.826 13.83 1.34 33.26 3.01
3126 3557 4.567747 GGAAAGACTCCCTTCATAGGCAAA 60.568 45.833 0.00 0.00 40.50 3.68
3132 3563 2.505819 TCCCTTCATAGGCAAACTCCTC 59.494 50.000 0.00 0.00 40.50 3.71
3133 3564 2.507471 CCCTTCATAGGCAAACTCCTCT 59.493 50.000 0.00 0.00 40.50 3.69
3134 3565 3.054065 CCCTTCATAGGCAAACTCCTCTT 60.054 47.826 0.00 0.00 40.50 2.85
3135 3566 4.568592 CCCTTCATAGGCAAACTCCTCTTT 60.569 45.833 0.00 0.00 40.50 2.52
3136 3567 4.397417 CCTTCATAGGCAAACTCCTCTTTG 59.603 45.833 0.00 0.00 37.66 2.77
3137 3568 3.955471 TCATAGGCAAACTCCTCTTTGG 58.045 45.455 0.00 0.00 37.66 3.28
3142 3573 2.680577 GCAAACTCCTCTTTGGCATTG 58.319 47.619 0.00 0.00 32.59 2.82
3143 3574 2.036346 GCAAACTCCTCTTTGGCATTGT 59.964 45.455 0.00 0.00 32.59 2.71
3144 3575 3.255642 GCAAACTCCTCTTTGGCATTGTA 59.744 43.478 0.00 0.00 32.59 2.41
3145 3576 4.798574 CAAACTCCTCTTTGGCATTGTAC 58.201 43.478 0.00 0.00 35.26 2.90
3146 3577 3.788227 ACTCCTCTTTGGCATTGTACA 57.212 42.857 0.00 0.00 35.26 2.90
3147 3578 4.098914 ACTCCTCTTTGGCATTGTACAA 57.901 40.909 11.41 11.41 35.26 2.41
3148 3579 4.666512 ACTCCTCTTTGGCATTGTACAAT 58.333 39.130 15.47 15.47 35.26 2.71
3158 3589 3.581024 CATTGTACAATGCAAGGTGCT 57.419 42.857 30.13 0.55 45.31 4.40
3159 3590 3.916761 CATTGTACAATGCAAGGTGCTT 58.083 40.909 30.13 0.02 45.31 3.91
3160 3591 5.058149 CATTGTACAATGCAAGGTGCTTA 57.942 39.130 30.13 0.00 45.31 3.09
3161 3592 4.764679 TTGTACAATGCAAGGTGCTTAG 57.235 40.909 3.59 0.00 45.31 2.18
3162 3593 4.014569 TGTACAATGCAAGGTGCTTAGA 57.985 40.909 9.81 0.00 45.31 2.10
3163 3594 4.002982 TGTACAATGCAAGGTGCTTAGAG 58.997 43.478 9.81 0.00 45.31 2.43
3164 3595 3.146104 ACAATGCAAGGTGCTTAGAGT 57.854 42.857 0.00 0.00 45.31 3.24
3165 3596 4.286297 ACAATGCAAGGTGCTTAGAGTA 57.714 40.909 0.00 0.00 45.31 2.59
3166 3597 4.256920 ACAATGCAAGGTGCTTAGAGTAG 58.743 43.478 0.00 0.00 45.31 2.57
3167 3598 3.550437 ATGCAAGGTGCTTAGAGTAGG 57.450 47.619 0.00 0.00 45.31 3.18
3168 3599 2.257207 TGCAAGGTGCTTAGAGTAGGT 58.743 47.619 1.43 0.00 45.31 3.08
3169 3600 2.028112 TGCAAGGTGCTTAGAGTAGGTG 60.028 50.000 1.43 0.00 45.31 4.00
3170 3601 2.622436 CAAGGTGCTTAGAGTAGGTGC 58.378 52.381 0.00 0.00 0.00 5.01
3171 3602 2.234908 CAAGGTGCTTAGAGTAGGTGCT 59.765 50.000 0.00 0.00 0.00 4.40
3172 3603 2.541466 AGGTGCTTAGAGTAGGTGCTT 58.459 47.619 0.00 0.00 0.00 3.91
3173 3604 3.709587 AGGTGCTTAGAGTAGGTGCTTA 58.290 45.455 0.00 0.00 0.00 3.09
3174 3605 3.702045 AGGTGCTTAGAGTAGGTGCTTAG 59.298 47.826 0.00 0.00 0.00 2.18
3175 3606 3.700038 GGTGCTTAGAGTAGGTGCTTAGA 59.300 47.826 0.00 0.00 0.00 2.10
3176 3607 4.202070 GGTGCTTAGAGTAGGTGCTTAGAG 60.202 50.000 0.00 0.00 0.00 2.43
3177 3608 4.641094 GTGCTTAGAGTAGGTGCTTAGAGA 59.359 45.833 0.00 0.00 0.00 3.10
3178 3609 5.125739 GTGCTTAGAGTAGGTGCTTAGAGAA 59.874 44.000 0.00 0.00 0.00 2.87
3179 3610 5.715279 TGCTTAGAGTAGGTGCTTAGAGAAA 59.285 40.000 0.00 0.00 0.00 2.52
3180 3611 6.381420 TGCTTAGAGTAGGTGCTTAGAGAAAT 59.619 38.462 0.00 0.00 0.00 2.17
3181 3612 7.560262 TGCTTAGAGTAGGTGCTTAGAGAAATA 59.440 37.037 0.00 0.00 0.00 1.40
3182 3613 8.414778 GCTTAGAGTAGGTGCTTAGAGAAATAA 58.585 37.037 0.00 0.00 0.00 1.40
3183 3614 9.959749 CTTAGAGTAGGTGCTTAGAGAAATAAG 57.040 37.037 0.00 0.00 36.11 1.73
3184 3615 7.354751 AGAGTAGGTGCTTAGAGAAATAAGG 57.645 40.000 0.00 0.00 34.04 2.69
3185 3616 6.325286 AGAGTAGGTGCTTAGAGAAATAAGGG 59.675 42.308 0.00 0.00 34.04 3.95
3186 3617 6.203072 AGTAGGTGCTTAGAGAAATAAGGGA 58.797 40.000 0.00 0.00 34.04 4.20
3187 3618 5.622346 AGGTGCTTAGAGAAATAAGGGAG 57.378 43.478 0.00 0.00 34.04 4.30
3188 3619 5.033522 AGGTGCTTAGAGAAATAAGGGAGT 58.966 41.667 0.00 0.00 34.04 3.85
3189 3620 6.203072 AGGTGCTTAGAGAAATAAGGGAGTA 58.797 40.000 0.00 0.00 34.04 2.59
3190 3621 6.098552 AGGTGCTTAGAGAAATAAGGGAGTAC 59.901 42.308 0.00 0.00 34.04 2.73
3191 3622 6.282167 GTGCTTAGAGAAATAAGGGAGTACC 58.718 44.000 0.00 0.00 40.67 3.34
3241 3672 9.820725 AATTTGATCTCATTCACTTTGAAAACA 57.179 25.926 0.00 0.00 40.12 2.83
3242 3673 9.820725 ATTTGATCTCATTCACTTTGAAAACAA 57.179 25.926 0.00 0.00 40.12 2.83
3243 3674 8.861033 TTGATCTCATTCACTTTGAAAACAAG 57.139 30.769 0.00 0.00 40.12 3.16
3244 3675 8.224389 TGATCTCATTCACTTTGAAAACAAGA 57.776 30.769 0.00 0.00 40.12 3.02
3245 3676 8.685427 TGATCTCATTCACTTTGAAAACAAGAA 58.315 29.630 0.00 0.00 40.12 2.52
3246 3677 8.862550 ATCTCATTCACTTTGAAAACAAGAAC 57.137 30.769 0.00 0.00 40.12 3.01
3247 3678 7.825681 TCTCATTCACTTTGAAAACAAGAACA 58.174 30.769 0.00 0.00 40.12 3.18
3248 3679 8.303156 TCTCATTCACTTTGAAAACAAGAACAA 58.697 29.630 0.00 0.00 40.12 2.83
3249 3680 8.824159 TCATTCACTTTGAAAACAAGAACAAA 57.176 26.923 0.00 0.00 40.12 2.83
3250 3681 9.434420 TCATTCACTTTGAAAACAAGAACAAAT 57.566 25.926 0.00 0.00 40.12 2.32
3253 3684 9.698309 TTCACTTTGAAAACAAGAACAAATACA 57.302 25.926 0.00 0.00 32.71 2.29
3254 3685 9.698309 TCACTTTGAAAACAAGAACAAATACAA 57.302 25.926 0.00 0.00 33.01 2.41
3255 3686 9.739786 CACTTTGAAAACAAGAACAAATACAAC 57.260 29.630 0.00 0.00 33.01 3.32
3256 3687 8.931775 ACTTTGAAAACAAGAACAAATACAACC 58.068 29.630 0.00 0.00 33.01 3.77
3257 3688 7.835634 TTGAAAACAAGAACAAATACAACCC 57.164 32.000 0.00 0.00 0.00 4.11
3258 3689 6.936279 TGAAAACAAGAACAAATACAACCCA 58.064 32.000 0.00 0.00 0.00 4.51
3259 3690 6.814146 TGAAAACAAGAACAAATACAACCCAC 59.186 34.615 0.00 0.00 0.00 4.61
3260 3691 4.561735 ACAAGAACAAATACAACCCACG 57.438 40.909 0.00 0.00 0.00 4.94
3261 3692 3.949113 ACAAGAACAAATACAACCCACGT 59.051 39.130 0.00 0.00 0.00 4.49
3262 3693 4.035909 ACAAGAACAAATACAACCCACGTC 59.964 41.667 0.00 0.00 0.00 4.34
3263 3694 3.811083 AGAACAAATACAACCCACGTCA 58.189 40.909 0.00 0.00 0.00 4.35
3264 3695 3.813166 AGAACAAATACAACCCACGTCAG 59.187 43.478 0.00 0.00 0.00 3.51
3265 3696 1.877443 ACAAATACAACCCACGTCAGC 59.123 47.619 0.00 0.00 0.00 4.26
3266 3697 1.876799 CAAATACAACCCACGTCAGCA 59.123 47.619 0.00 0.00 0.00 4.41
3267 3698 1.519408 AATACAACCCACGTCAGCAC 58.481 50.000 0.00 0.00 0.00 4.40
3268 3699 0.394938 ATACAACCCACGTCAGCACA 59.605 50.000 0.00 0.00 0.00 4.57
3269 3700 0.531090 TACAACCCACGTCAGCACAC 60.531 55.000 0.00 0.00 0.00 3.82
3270 3701 1.817520 CAACCCACGTCAGCACACA 60.818 57.895 0.00 0.00 0.00 3.72
3271 3702 1.817941 AACCCACGTCAGCACACAC 60.818 57.895 0.00 0.00 0.00 3.82
3272 3703 2.203001 CCCACGTCAGCACACACA 60.203 61.111 0.00 0.00 0.00 3.72
3273 3704 2.534019 CCCACGTCAGCACACACAC 61.534 63.158 0.00 0.00 0.00 3.82
3274 3705 1.813337 CCACGTCAGCACACACACA 60.813 57.895 0.00 0.00 0.00 3.72
3275 3706 1.159713 CCACGTCAGCACACACACAT 61.160 55.000 0.00 0.00 0.00 3.21
3276 3707 0.233074 CACGTCAGCACACACACATC 59.767 55.000 0.00 0.00 0.00 3.06
3277 3708 0.104855 ACGTCAGCACACACACATCT 59.895 50.000 0.00 0.00 0.00 2.90
3278 3709 1.220529 CGTCAGCACACACACATCTT 58.779 50.000 0.00 0.00 0.00 2.40
3279 3710 2.223947 ACGTCAGCACACACACATCTTA 60.224 45.455 0.00 0.00 0.00 2.10
3280 3711 2.995939 CGTCAGCACACACACATCTTAT 59.004 45.455 0.00 0.00 0.00 1.73
3281 3712 4.173256 CGTCAGCACACACACATCTTATA 58.827 43.478 0.00 0.00 0.00 0.98
3282 3713 4.625311 CGTCAGCACACACACATCTTATAA 59.375 41.667 0.00 0.00 0.00 0.98
3283 3714 5.444613 CGTCAGCACACACACATCTTATAAC 60.445 44.000 0.00 0.00 0.00 1.89
3284 3715 5.408299 GTCAGCACACACACATCTTATAACA 59.592 40.000 0.00 0.00 0.00 2.41
3285 3716 6.092670 GTCAGCACACACACATCTTATAACAT 59.907 38.462 0.00 0.00 0.00 2.71
3286 3717 6.313658 TCAGCACACACACATCTTATAACATC 59.686 38.462 0.00 0.00 0.00 3.06
3287 3718 6.092533 CAGCACACACACATCTTATAACATCA 59.907 38.462 0.00 0.00 0.00 3.07
3288 3719 6.825213 AGCACACACACATCTTATAACATCAT 59.175 34.615 0.00 0.00 0.00 2.45
3289 3720 7.986889 AGCACACACACATCTTATAACATCATA 59.013 33.333 0.00 0.00 0.00 2.15
3290 3721 8.777413 GCACACACACATCTTATAACATCATAT 58.223 33.333 0.00 0.00 0.00 1.78
3292 3723 9.494271 ACACACACATCTTATAACATCATATCC 57.506 33.333 0.00 0.00 0.00 2.59
3293 3724 9.492973 CACACACATCTTATAACATCATATCCA 57.507 33.333 0.00 0.00 0.00 3.41
3298 3729 9.182214 ACATCTTATAACATCATATCCAATGGC 57.818 33.333 0.00 0.00 0.00 4.40
3299 3730 9.404848 CATCTTATAACATCATATCCAATGGCT 57.595 33.333 0.00 0.00 0.00 4.75
3307 3738 9.812347 AACATCATATCCAATGGCTATAAAAGA 57.188 29.630 0.00 0.00 0.00 2.52
3308 3739 9.986157 ACATCATATCCAATGGCTATAAAAGAT 57.014 29.630 0.00 0.00 0.00 2.40
3314 3745 8.945195 ATCCAATGGCTATAAAAGATGAATGA 57.055 30.769 0.00 0.00 0.00 2.57
3315 3746 8.400184 TCCAATGGCTATAAAAGATGAATGAG 57.600 34.615 0.00 0.00 0.00 2.90
3316 3747 8.219868 TCCAATGGCTATAAAAGATGAATGAGA 58.780 33.333 0.00 0.00 0.00 3.27
3317 3748 8.295288 CCAATGGCTATAAAAGATGAATGAGAC 58.705 37.037 0.00 0.00 0.00 3.36
3318 3749 7.992754 ATGGCTATAAAAGATGAATGAGACC 57.007 36.000 0.00 0.00 0.00 3.85
3319 3750 6.899089 TGGCTATAAAAGATGAATGAGACCA 58.101 36.000 0.00 0.00 0.00 4.02
3320 3751 7.345691 TGGCTATAAAAGATGAATGAGACCAA 58.654 34.615 0.00 0.00 0.00 3.67
3321 3752 7.833682 TGGCTATAAAAGATGAATGAGACCAAA 59.166 33.333 0.00 0.00 0.00 3.28
3322 3753 8.854117 GGCTATAAAAGATGAATGAGACCAAAT 58.146 33.333 0.00 0.00 0.00 2.32
3356 3787 6.900568 CTAGATGAGTTCTAGCAAAACAGG 57.099 41.667 0.00 0.00 45.63 4.00
3357 3788 4.006319 AGATGAGTTCTAGCAAAACAGGC 58.994 43.478 0.00 0.00 30.96 4.85
3358 3789 3.492102 TGAGTTCTAGCAAAACAGGCT 57.508 42.857 0.00 0.00 45.18 4.58
3359 3790 3.820557 TGAGTTCTAGCAAAACAGGCTT 58.179 40.909 0.00 0.00 42.62 4.35
3360 3791 4.207165 TGAGTTCTAGCAAAACAGGCTTT 58.793 39.130 0.00 0.00 42.62 3.51
3361 3792 4.644685 TGAGTTCTAGCAAAACAGGCTTTT 59.355 37.500 0.00 0.00 42.62 2.27
3362 3793 5.188327 AGTTCTAGCAAAACAGGCTTTTC 57.812 39.130 0.00 0.00 42.62 2.29
3363 3794 4.889995 AGTTCTAGCAAAACAGGCTTTTCT 59.110 37.500 0.00 0.00 42.62 2.52
3364 3795 5.360999 AGTTCTAGCAAAACAGGCTTTTCTT 59.639 36.000 0.00 0.00 42.62 2.52
3365 3796 6.546034 AGTTCTAGCAAAACAGGCTTTTCTTA 59.454 34.615 0.00 0.00 42.62 2.10
3366 3797 6.952773 TCTAGCAAAACAGGCTTTTCTTAA 57.047 33.333 0.00 0.00 42.62 1.85
3367 3798 6.970484 TCTAGCAAAACAGGCTTTTCTTAAG 58.030 36.000 0.00 0.00 42.62 1.85
3368 3799 4.371786 AGCAAAACAGGCTTTTCTTAAGC 58.628 39.130 0.00 0.98 38.81 3.09
3369 3800 4.119136 GCAAAACAGGCTTTTCTTAAGCA 58.881 39.130 11.18 0.00 44.71 3.91
3370 3801 4.025730 GCAAAACAGGCTTTTCTTAAGCAC 60.026 41.667 11.18 1.86 44.71 4.40
3371 3802 4.322080 AAACAGGCTTTTCTTAAGCACC 57.678 40.909 11.18 0.00 44.71 5.01
3372 3803 1.880027 ACAGGCTTTTCTTAAGCACCG 59.120 47.619 11.18 2.18 44.71 4.94
3373 3804 1.200020 CAGGCTTTTCTTAAGCACCGG 59.800 52.381 0.00 0.00 44.71 5.28
3374 3805 1.202891 AGGCTTTTCTTAAGCACCGGT 60.203 47.619 0.00 0.00 44.71 5.28
3375 3806 1.068541 GGCTTTTCTTAAGCACCGGTG 60.069 52.381 30.66 30.66 44.71 4.94
3388 3819 3.740044 CACCGGTGCTTATTTGTACAG 57.260 47.619 24.02 0.00 0.00 2.74
3389 3820 2.418628 CACCGGTGCTTATTTGTACAGG 59.581 50.000 24.02 0.00 41.71 4.00
3390 3821 2.303600 ACCGGTGCTTATTTGTACAGGA 59.696 45.455 6.12 0.00 39.37 3.86
3391 3822 3.054655 ACCGGTGCTTATTTGTACAGGAT 60.055 43.478 6.12 0.00 39.37 3.24
3392 3823 4.162698 ACCGGTGCTTATTTGTACAGGATA 59.837 41.667 6.12 0.00 39.37 2.59
3393 3824 4.750098 CCGGTGCTTATTTGTACAGGATAG 59.250 45.833 0.00 0.00 39.37 2.08
3394 3825 5.452776 CCGGTGCTTATTTGTACAGGATAGA 60.453 44.000 0.00 0.00 39.37 1.98
3395 3826 5.462398 CGGTGCTTATTTGTACAGGATAGAC 59.538 44.000 0.00 0.00 0.00 2.59
3396 3827 5.462398 GGTGCTTATTTGTACAGGATAGACG 59.538 44.000 0.00 0.00 0.00 4.18
3397 3828 5.047847 TGCTTATTTGTACAGGATAGACGC 58.952 41.667 0.00 4.64 0.00 5.19
3398 3829 5.163447 TGCTTATTTGTACAGGATAGACGCT 60.163 40.000 0.00 0.00 0.00 5.07
3399 3830 5.753921 GCTTATTTGTACAGGATAGACGCTT 59.246 40.000 0.00 0.00 0.00 4.68
3400 3831 6.921857 GCTTATTTGTACAGGATAGACGCTTA 59.078 38.462 0.00 0.00 0.00 3.09
3401 3832 7.437267 GCTTATTTGTACAGGATAGACGCTTAA 59.563 37.037 0.00 0.00 0.00 1.85
3402 3833 8.638685 TTATTTGTACAGGATAGACGCTTAAC 57.361 34.615 0.00 0.00 0.00 2.01
3403 3834 5.909621 TTGTACAGGATAGACGCTTAACT 57.090 39.130 0.00 0.00 0.00 2.24
3404 3835 7.395190 TTTGTACAGGATAGACGCTTAACTA 57.605 36.000 0.00 0.00 0.00 2.24
3405 3836 7.395190 TTGTACAGGATAGACGCTTAACTAA 57.605 36.000 0.00 0.00 0.00 2.24
3406 3837 7.024340 TGTACAGGATAGACGCTTAACTAAG 57.976 40.000 0.00 0.00 36.40 2.18
3418 3849 4.705337 CTTAACTAAGCGTCTCTCCTGT 57.295 45.455 0.00 0.00 0.00 4.00
3419 3850 5.814764 CTTAACTAAGCGTCTCTCCTGTA 57.185 43.478 0.00 0.00 0.00 2.74
3420 3851 5.812652 CTTAACTAAGCGTCTCTCCTGTAG 58.187 45.833 0.00 0.00 0.00 2.74
3421 3852 3.630892 ACTAAGCGTCTCTCCTGTAGA 57.369 47.619 0.00 0.00 0.00 2.59
3422 3853 3.952931 ACTAAGCGTCTCTCCTGTAGAA 58.047 45.455 0.00 0.00 32.46 2.10
3423 3854 4.333690 ACTAAGCGTCTCTCCTGTAGAAA 58.666 43.478 0.00 0.00 32.46 2.52
3424 3855 4.951094 ACTAAGCGTCTCTCCTGTAGAAAT 59.049 41.667 0.00 0.00 32.46 2.17
3425 3856 6.120905 ACTAAGCGTCTCTCCTGTAGAAATA 58.879 40.000 0.00 0.00 32.46 1.40
3426 3857 5.508200 AAGCGTCTCTCCTGTAGAAATAG 57.492 43.478 0.00 0.00 32.46 1.73
3427 3858 3.886505 AGCGTCTCTCCTGTAGAAATAGG 59.113 47.826 0.00 0.00 35.36 2.57
3428 3859 3.551250 GCGTCTCTCCTGTAGAAATAGGC 60.551 52.174 0.00 0.00 34.08 3.93
3429 3860 3.632604 CGTCTCTCCTGTAGAAATAGGCA 59.367 47.826 0.00 0.00 34.08 4.75
3430 3861 4.498345 CGTCTCTCCTGTAGAAATAGGCAC 60.498 50.000 0.00 0.00 34.08 5.01
3431 3862 3.961408 TCTCTCCTGTAGAAATAGGCACC 59.039 47.826 0.00 0.00 34.08 5.01
3432 3863 2.693591 TCTCCTGTAGAAATAGGCACCG 59.306 50.000 0.00 0.00 34.08 4.94
3433 3864 1.760613 TCCTGTAGAAATAGGCACCGG 59.239 52.381 0.00 0.00 34.08 5.28
3434 3865 1.485066 CCTGTAGAAATAGGCACCGGT 59.515 52.381 0.00 0.00 0.00 5.28
3435 3866 2.550978 CTGTAGAAATAGGCACCGGTG 58.449 52.381 30.66 30.66 0.00 4.94
3447 3878 2.119671 CACCGGTGCTTCAGAAAAAC 57.880 50.000 24.02 0.00 0.00 2.43
3448 3879 1.676006 CACCGGTGCTTCAGAAAAACT 59.324 47.619 24.02 0.00 0.00 2.66
3449 3880 1.947456 ACCGGTGCTTCAGAAAAACTC 59.053 47.619 6.12 0.00 0.00 3.01
3450 3881 1.069906 CCGGTGCTTCAGAAAAACTCG 60.070 52.381 0.00 0.00 0.00 4.18
3451 3882 1.069906 CGGTGCTTCAGAAAAACTCGG 60.070 52.381 0.00 0.00 0.00 4.63
3452 3883 1.947456 GGTGCTTCAGAAAAACTCGGT 59.053 47.619 0.00 0.00 0.00 4.69
3453 3884 2.357952 GGTGCTTCAGAAAAACTCGGTT 59.642 45.455 0.00 0.00 0.00 4.44
3454 3885 3.181490 GGTGCTTCAGAAAAACTCGGTTT 60.181 43.478 0.00 0.00 37.34 3.27
3455 3886 4.035909 GGTGCTTCAGAAAAACTCGGTTTA 59.964 41.667 3.01 0.00 34.43 2.01
3456 3887 5.278315 GGTGCTTCAGAAAAACTCGGTTTAT 60.278 40.000 3.01 0.00 34.43 1.40
3457 3888 6.206498 GTGCTTCAGAAAAACTCGGTTTATT 58.794 36.000 3.01 1.51 34.43 1.40
3458 3889 6.695713 GTGCTTCAGAAAAACTCGGTTTATTT 59.304 34.615 3.01 0.00 34.43 1.40
3459 3890 7.222031 GTGCTTCAGAAAAACTCGGTTTATTTT 59.778 33.333 3.01 0.00 34.43 1.82
3460 3891 7.434013 TGCTTCAGAAAAACTCGGTTTATTTTC 59.566 33.333 3.01 0.00 40.40 2.29
3465 3896 8.902735 CAGAAAAACTCGGTTTATTTTCTAAGC 58.097 33.333 10.85 0.00 45.43 3.09
3466 3897 8.626526 AGAAAAACTCGGTTTATTTTCTAAGCA 58.373 29.630 9.81 0.00 45.38 3.91
3467 3898 8.570096 AAAAACTCGGTTTATTTTCTAAGCAC 57.430 30.769 3.01 0.00 34.43 4.40
3468 3899 5.874895 ACTCGGTTTATTTTCTAAGCACC 57.125 39.130 0.00 0.00 0.00 5.01
3469 3900 5.557866 ACTCGGTTTATTTTCTAAGCACCT 58.442 37.500 0.00 0.00 0.00 4.00
3470 3901 5.642491 ACTCGGTTTATTTTCTAAGCACCTC 59.358 40.000 0.00 0.00 0.00 3.85
3471 3902 4.939439 TCGGTTTATTTTCTAAGCACCTCC 59.061 41.667 0.00 0.00 0.00 4.30
3472 3903 4.095932 CGGTTTATTTTCTAAGCACCTCCC 59.904 45.833 0.00 0.00 0.00 4.30
3473 3904 5.262009 GGTTTATTTTCTAAGCACCTCCCT 58.738 41.667 0.00 0.00 0.00 4.20
3474 3905 6.420638 GGTTTATTTTCTAAGCACCTCCCTA 58.579 40.000 0.00 0.00 0.00 3.53
3475 3906 6.888088 GGTTTATTTTCTAAGCACCTCCCTAA 59.112 38.462 0.00 0.00 0.00 2.69
3476 3907 7.067129 GGTTTATTTTCTAAGCACCTCCCTAAG 59.933 40.741 0.00 0.00 0.00 2.18
3477 3908 3.629142 TTTCTAAGCACCTCCCTAAGC 57.371 47.619 0.00 0.00 0.00 3.09
3478 3909 2.247699 TCTAAGCACCTCCCTAAGCA 57.752 50.000 0.00 0.00 0.00 3.91
3479 3910 2.764269 TCTAAGCACCTCCCTAAGCAT 58.236 47.619 0.00 0.00 0.00 3.79
3480 3911 2.700897 TCTAAGCACCTCCCTAAGCATC 59.299 50.000 0.00 0.00 0.00 3.91
3481 3912 1.589414 AAGCACCTCCCTAAGCATCT 58.411 50.000 0.00 0.00 0.00 2.90
3482 3913 1.127343 AGCACCTCCCTAAGCATCTC 58.873 55.000 0.00 0.00 0.00 2.75
3483 3914 0.107643 GCACCTCCCTAAGCATCTCC 59.892 60.000 0.00 0.00 0.00 3.71
3484 3915 0.761802 CACCTCCCTAAGCATCTCCC 59.238 60.000 0.00 0.00 0.00 4.30
3485 3916 0.343372 ACCTCCCTAAGCATCTCCCA 59.657 55.000 0.00 0.00 0.00 4.37
3486 3917 1.061033 ACCTCCCTAAGCATCTCCCAT 60.061 52.381 0.00 0.00 0.00 4.00
3487 3918 2.061061 CCTCCCTAAGCATCTCCCATT 58.939 52.381 0.00 0.00 0.00 3.16
3488 3919 2.224719 CCTCCCTAAGCATCTCCCATTG 60.225 54.545 0.00 0.00 0.00 2.82
3489 3920 2.441001 CTCCCTAAGCATCTCCCATTGT 59.559 50.000 0.00 0.00 0.00 2.71
3490 3921 3.648067 CTCCCTAAGCATCTCCCATTGTA 59.352 47.826 0.00 0.00 0.00 2.41
3491 3922 4.242811 TCCCTAAGCATCTCCCATTGTAT 58.757 43.478 0.00 0.00 0.00 2.29
3492 3923 5.411493 TCCCTAAGCATCTCCCATTGTATA 58.589 41.667 0.00 0.00 0.00 1.47
3493 3924 5.849475 TCCCTAAGCATCTCCCATTGTATAA 59.151 40.000 0.00 0.00 0.00 0.98
3494 3925 6.013379 TCCCTAAGCATCTCCCATTGTATAAG 60.013 42.308 0.00 0.00 0.00 1.73
3495 3926 6.176183 CCTAAGCATCTCCCATTGTATAAGG 58.824 44.000 0.00 0.00 0.00 2.69
3496 3927 4.026356 AGCATCTCCCATTGTATAAGGC 57.974 45.455 0.00 0.00 0.00 4.35
3517 3948 2.291540 CCTTAGTGAGCAATTCCCCCAA 60.292 50.000 0.00 0.00 0.00 4.12
3550 3981 2.436417 TGCAATGAGCCTGAAAGTACC 58.564 47.619 0.00 0.00 44.83 3.34
3566 3997 2.374170 AGTACCGTTTCCCAATTCCACT 59.626 45.455 0.00 0.00 0.00 4.00
3678 4109 7.337436 TGCATCTCACAAATGAATCTGATACAA 59.663 33.333 0.00 0.00 33.30 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 49 4.340950 TGAAATGGGTTCACTTCTCCAAAC 59.659 41.667 0.00 0.00 41.47 2.93
171 174 5.625311 GTCAAATTCCAATCGAGTTTGTGAC 59.375 40.000 7.35 0.00 44.44 3.67
172 175 5.530915 AGTCAAATTCCAATCGAGTTTGTGA 59.469 36.000 7.35 0.00 44.44 3.58
272 277 5.479306 GGCTTATCCTCCTTTTCAAAAACC 58.521 41.667 0.00 0.00 0.00 3.27
297 302 3.008517 TCAATGCGGAGGCTGGGA 61.009 61.111 0.00 0.00 40.82 4.37
298 303 2.515523 CTCAATGCGGAGGCTGGG 60.516 66.667 0.00 0.00 40.82 4.45
299 304 3.207669 GCTCAATGCGGAGGCTGG 61.208 66.667 0.00 0.00 40.82 4.85
312 317 5.700832 ACAAGATTTATGTGAAACTCGCTCA 59.299 36.000 0.00 0.00 38.04 4.26
339 344 9.426837 AGTACATGCAGAAACTTTAATTACGTA 57.573 29.630 0.00 0.00 0.00 3.57
342 347 9.543018 GTGAGTACATGCAGAAACTTTAATTAC 57.457 33.333 0.00 0.00 0.00 1.89
387 392 7.680730 TCTTGTTCTTCCTATATTGGCTATCC 58.319 38.462 0.00 0.00 0.00 2.59
551 563 7.809806 CCAATGAAAACTTGGAATCTCTAACAC 59.190 37.037 0.00 0.00 44.95 3.32
640 652 2.344441 CGATCGTTACACATTGCGACTT 59.656 45.455 7.03 0.00 36.16 3.01
701 713 1.571460 CGCAAGAAGTGTGCTGGAC 59.429 57.895 0.00 0.00 39.95 4.02
710 722 1.768870 ACTATATGCCCCGCAAGAAGT 59.231 47.619 0.00 0.00 43.62 3.01
768 783 2.510768 GGCGACGGAGAATTAGTCAT 57.489 50.000 0.00 0.00 34.80 3.06
881 897 5.416271 ACGTATTTATAGGCAGGTATGGG 57.584 43.478 0.00 0.00 0.00 4.00
948 964 1.213013 CACGCCTGTACTTCGAGCT 59.787 57.895 8.50 0.00 0.00 4.09
952 968 0.793478 CTCGACACGCCTGTACTTCG 60.793 60.000 0.00 0.00 0.00 3.79
968 988 7.461546 CGATCGGCAAGTAATAATATGTTCTCG 60.462 40.741 7.38 0.00 0.00 4.04
976 996 3.916172 GCGTCGATCGGCAAGTAATAATA 59.084 43.478 21.12 0.00 40.26 0.98
977 997 2.729882 GCGTCGATCGGCAAGTAATAAT 59.270 45.455 21.12 0.00 40.26 1.28
978 998 2.121786 GCGTCGATCGGCAAGTAATAA 58.878 47.619 21.12 0.00 40.26 1.40
979 999 1.762419 GCGTCGATCGGCAAGTAATA 58.238 50.000 21.12 0.00 40.26 0.98
1263 1286 1.299089 CGTGTCGCCATCGCTGATA 60.299 57.895 0.00 0.00 35.26 2.15
1329 1352 3.321723 CTGCACGCGAGAAACGTCG 62.322 63.158 15.93 0.00 42.96 5.12
1408 1431 1.313091 TGGTCGAGCAGTATGACGCT 61.313 55.000 14.39 0.00 39.69 5.07
1923 1946 0.035152 TGAGCATGACGAAAGCCCAT 60.035 50.000 0.00 0.00 0.00 4.00
1961 1984 2.703007 AGCCTGTGGTAAGATCTGATCC 59.297 50.000 13.83 0.00 0.00 3.36
2410 2433 1.152440 CCAGAGATACCTCCGCCCT 60.152 63.158 0.00 0.00 40.30 5.19
2463 2486 0.758734 CCATGGCTCTTATCCCGTCA 59.241 55.000 0.00 0.00 0.00 4.35
2619 2642 3.999285 ACGTCCCTGCTCCCCTCT 61.999 66.667 0.00 0.00 0.00 3.69
2711 2734 8.842358 TTTGAAACGGAGTGAATACTTCTATT 57.158 30.769 0.00 0.00 45.00 1.73
2712 2735 8.842358 TTTTGAAACGGAGTGAATACTTCTAT 57.158 30.769 0.00 0.00 45.00 1.98
2714 2737 7.562454 TTTTTGAAACGGAGTGAATACTTCT 57.438 32.000 0.00 0.00 45.00 2.85
2801 2845 9.832445 TGCCGAGATAGTATTTCTATTTCTTTT 57.168 29.630 0.00 0.00 39.22 2.27
2857 2903 5.153950 AGTTGAGACACTTATCTTGGGAC 57.846 43.478 0.00 0.00 0.00 4.46
2859 2905 9.099454 GTATAAAGTTGAGACACTTATCTTGGG 57.901 37.037 0.00 0.00 35.87 4.12
2912 2962 8.605947 TCCTCCATCCCAATATAAATGTCTAAG 58.394 37.037 0.00 0.00 0.00 2.18
2920 2971 4.104102 ACGCTTCCTCCATCCCAATATAAA 59.896 41.667 0.00 0.00 0.00 1.40
2932 2983 0.895530 CTTAGGACACGCTTCCTCCA 59.104 55.000 8.67 0.00 42.98 3.86
3021 3318 8.340618 TCTTTCACCTTTAGAATGGATTTCTG 57.659 34.615 1.43 0.00 44.54 3.02
3078 3375 4.226846 CACCCTAGCAATATCATCCATCCT 59.773 45.833 0.00 0.00 0.00 3.24
3126 3557 3.788227 TGTACAATGCCAAAGAGGAGT 57.212 42.857 0.00 0.00 41.22 3.85
3149 3580 2.622436 CACCTACTCTAAGCACCTTGC 58.378 52.381 0.00 0.00 45.46 4.01
3150 3581 2.234908 AGCACCTACTCTAAGCACCTTG 59.765 50.000 0.00 0.00 0.00 3.61
3151 3582 2.541466 AGCACCTACTCTAAGCACCTT 58.459 47.619 0.00 0.00 0.00 3.50
3152 3583 2.239681 AGCACCTACTCTAAGCACCT 57.760 50.000 0.00 0.00 0.00 4.00
3153 3584 3.700038 TCTAAGCACCTACTCTAAGCACC 59.300 47.826 0.00 0.00 0.00 5.01
3154 3585 4.641094 TCTCTAAGCACCTACTCTAAGCAC 59.359 45.833 0.00 0.00 0.00 4.40
3155 3586 4.856509 TCTCTAAGCACCTACTCTAAGCA 58.143 43.478 0.00 0.00 0.00 3.91
3156 3587 5.838531 TTCTCTAAGCACCTACTCTAAGC 57.161 43.478 0.00 0.00 0.00 3.09
3157 3588 9.959749 CTTATTTCTCTAAGCACCTACTCTAAG 57.040 37.037 0.00 0.00 0.00 2.18
3158 3589 8.915036 CCTTATTTCTCTAAGCACCTACTCTAA 58.085 37.037 0.00 0.00 0.00 2.10
3159 3590 7.506261 CCCTTATTTCTCTAAGCACCTACTCTA 59.494 40.741 0.00 0.00 0.00 2.43
3160 3591 6.325286 CCCTTATTTCTCTAAGCACCTACTCT 59.675 42.308 0.00 0.00 0.00 3.24
3161 3592 6.324254 TCCCTTATTTCTCTAAGCACCTACTC 59.676 42.308 0.00 0.00 0.00 2.59
3162 3593 6.203072 TCCCTTATTTCTCTAAGCACCTACT 58.797 40.000 0.00 0.00 0.00 2.57
3163 3594 6.098552 ACTCCCTTATTTCTCTAAGCACCTAC 59.901 42.308 0.00 0.00 0.00 3.18
3164 3595 6.203072 ACTCCCTTATTTCTCTAAGCACCTA 58.797 40.000 0.00 0.00 0.00 3.08
3165 3596 5.033522 ACTCCCTTATTTCTCTAAGCACCT 58.966 41.667 0.00 0.00 0.00 4.00
3166 3597 5.360649 ACTCCCTTATTTCTCTAAGCACC 57.639 43.478 0.00 0.00 0.00 5.01
3167 3598 6.098552 AGGTACTCCCTTATTTCTCTAAGCAC 59.901 42.308 0.00 0.00 42.73 4.40
3168 3599 6.203072 AGGTACTCCCTTATTTCTCTAAGCA 58.797 40.000 0.00 0.00 42.73 3.91
3169 3600 6.734502 AGGTACTCCCTTATTTCTCTAAGC 57.265 41.667 0.00 0.00 42.73 3.09
3170 3601 9.643735 TTCTAGGTACTCCCTTATTTCTCTAAG 57.356 37.037 0.00 0.00 42.73 2.18
3171 3602 9.418839 GTTCTAGGTACTCCCTTATTTCTCTAA 57.581 37.037 0.00 0.00 42.73 2.10
3172 3603 8.789782 AGTTCTAGGTACTCCCTTATTTCTCTA 58.210 37.037 0.00 0.00 42.73 2.43
3173 3604 7.654452 AGTTCTAGGTACTCCCTTATTTCTCT 58.346 38.462 0.00 0.00 42.73 3.10
3174 3605 7.560626 TGAGTTCTAGGTACTCCCTTATTTCTC 59.439 40.741 17.72 0.00 42.73 2.87
3175 3606 7.420029 TGAGTTCTAGGTACTCCCTTATTTCT 58.580 38.462 17.72 0.00 42.73 2.52
3176 3607 7.657023 TGAGTTCTAGGTACTCCCTTATTTC 57.343 40.000 17.72 0.00 42.73 2.17
3177 3608 8.068733 AGATGAGTTCTAGGTACTCCCTTATTT 58.931 37.037 17.72 3.81 42.73 1.40
3178 3609 7.597327 AGATGAGTTCTAGGTACTCCCTTATT 58.403 38.462 17.72 2.92 42.73 1.40
3179 3610 7.169287 AGATGAGTTCTAGGTACTCCCTTAT 57.831 40.000 17.72 8.74 42.73 1.73
3180 3611 6.593759 AGATGAGTTCTAGGTACTCCCTTA 57.406 41.667 17.72 5.36 42.73 2.69
3181 3612 5.475398 AGATGAGTTCTAGGTACTCCCTT 57.525 43.478 17.72 7.62 42.73 3.95
3182 3613 7.475654 CATCTAGATGAGTTCTAGGTACTCCCT 60.476 44.444 25.78 16.34 44.99 4.20
3183 3614 6.657541 CATCTAGATGAGTTCTAGGTACTCCC 59.342 46.154 25.78 12.05 44.99 4.30
3184 3615 7.455058 TCATCTAGATGAGTTCTAGGTACTCC 58.545 42.308 27.93 8.04 44.99 3.85
3215 3646 9.820725 TGTTTTCAAAGTGAATGAGATCAAATT 57.179 25.926 0.00 0.00 36.11 1.82
3216 3647 9.820725 TTGTTTTCAAAGTGAATGAGATCAAAT 57.179 25.926 0.00 0.00 36.11 2.32
3217 3648 9.304731 CTTGTTTTCAAAGTGAATGAGATCAAA 57.695 29.630 0.00 0.00 39.47 2.69
3218 3649 8.685427 TCTTGTTTTCAAAGTGAATGAGATCAA 58.315 29.630 0.00 0.00 39.47 2.57
3219 3650 8.224389 TCTTGTTTTCAAAGTGAATGAGATCA 57.776 30.769 0.00 0.00 39.47 2.92
3220 3651 8.962111 GTTCTTGTTTTCAAAGTGAATGAGATC 58.038 33.333 0.00 0.00 39.47 2.75
3221 3652 8.469200 TGTTCTTGTTTTCAAAGTGAATGAGAT 58.531 29.630 0.00 0.00 39.47 2.75
3222 3653 7.825681 TGTTCTTGTTTTCAAAGTGAATGAGA 58.174 30.769 0.00 0.00 39.47 3.27
3223 3654 8.464770 TTGTTCTTGTTTTCAAAGTGAATGAG 57.535 30.769 0.00 0.00 39.47 2.90
3224 3655 8.824159 TTTGTTCTTGTTTTCAAAGTGAATGA 57.176 26.923 0.00 0.00 39.47 2.57
3227 3658 9.698309 TGTATTTGTTCTTGTTTTCAAAGTGAA 57.302 25.926 0.00 0.00 39.47 3.18
3228 3659 9.698309 TTGTATTTGTTCTTGTTTTCAAAGTGA 57.302 25.926 0.00 0.00 39.47 3.41
3229 3660 9.739786 GTTGTATTTGTTCTTGTTTTCAAAGTG 57.260 29.630 0.00 0.00 39.47 3.16
3230 3661 8.931775 GGTTGTATTTGTTCTTGTTTTCAAAGT 58.068 29.630 0.00 0.00 39.47 2.66
3231 3662 8.387354 GGGTTGTATTTGTTCTTGTTTTCAAAG 58.613 33.333 0.00 0.00 39.47 2.77
3232 3663 7.878127 TGGGTTGTATTTGTTCTTGTTTTCAAA 59.122 29.630 0.00 0.00 39.47 2.69
3233 3664 7.332182 GTGGGTTGTATTTGTTCTTGTTTTCAA 59.668 33.333 0.00 0.00 38.21 2.69
3234 3665 6.814146 GTGGGTTGTATTTGTTCTTGTTTTCA 59.186 34.615 0.00 0.00 0.00 2.69
3235 3666 6.020201 CGTGGGTTGTATTTGTTCTTGTTTTC 60.020 38.462 0.00 0.00 0.00 2.29
3236 3667 5.808030 CGTGGGTTGTATTTGTTCTTGTTTT 59.192 36.000 0.00 0.00 0.00 2.43
3237 3668 5.105675 ACGTGGGTTGTATTTGTTCTTGTTT 60.106 36.000 0.00 0.00 0.00 2.83
3238 3669 4.399934 ACGTGGGTTGTATTTGTTCTTGTT 59.600 37.500 0.00 0.00 0.00 2.83
3239 3670 3.949113 ACGTGGGTTGTATTTGTTCTTGT 59.051 39.130 0.00 0.00 0.00 3.16
3240 3671 4.035792 TGACGTGGGTTGTATTTGTTCTTG 59.964 41.667 0.00 0.00 0.00 3.02
3241 3672 4.200874 TGACGTGGGTTGTATTTGTTCTT 58.799 39.130 0.00 0.00 0.00 2.52
3242 3673 3.811083 TGACGTGGGTTGTATTTGTTCT 58.189 40.909 0.00 0.00 0.00 3.01
3243 3674 3.608474 GCTGACGTGGGTTGTATTTGTTC 60.608 47.826 0.00 0.00 0.00 3.18
3244 3675 2.292292 GCTGACGTGGGTTGTATTTGTT 59.708 45.455 0.00 0.00 0.00 2.83
3245 3676 1.877443 GCTGACGTGGGTTGTATTTGT 59.123 47.619 0.00 0.00 0.00 2.83
3246 3677 1.876799 TGCTGACGTGGGTTGTATTTG 59.123 47.619 0.00 0.00 0.00 2.32
3247 3678 1.877443 GTGCTGACGTGGGTTGTATTT 59.123 47.619 0.00 0.00 0.00 1.40
3248 3679 1.202710 TGTGCTGACGTGGGTTGTATT 60.203 47.619 0.00 0.00 0.00 1.89
3249 3680 0.394938 TGTGCTGACGTGGGTTGTAT 59.605 50.000 0.00 0.00 0.00 2.29
3250 3681 0.531090 GTGTGCTGACGTGGGTTGTA 60.531 55.000 0.00 0.00 0.00 2.41
3251 3682 1.817941 GTGTGCTGACGTGGGTTGT 60.818 57.895 0.00 0.00 0.00 3.32
3252 3683 1.817520 TGTGTGCTGACGTGGGTTG 60.818 57.895 0.00 0.00 0.00 3.77
3253 3684 1.817941 GTGTGTGCTGACGTGGGTT 60.818 57.895 0.00 0.00 0.00 4.11
3254 3685 2.203015 GTGTGTGCTGACGTGGGT 60.203 61.111 0.00 0.00 0.00 4.51
3255 3686 2.203001 TGTGTGTGCTGACGTGGG 60.203 61.111 0.00 0.00 0.00 4.61
3256 3687 1.159713 ATGTGTGTGTGCTGACGTGG 61.160 55.000 0.00 0.00 0.00 4.94
3257 3688 0.233074 GATGTGTGTGTGCTGACGTG 59.767 55.000 0.00 0.00 0.00 4.49
3258 3689 0.104855 AGATGTGTGTGTGCTGACGT 59.895 50.000 0.00 0.00 0.00 4.34
3259 3690 1.220529 AAGATGTGTGTGTGCTGACG 58.779 50.000 0.00 0.00 0.00 4.35
3260 3691 5.408299 TGTTATAAGATGTGTGTGTGCTGAC 59.592 40.000 0.00 0.00 0.00 3.51
3261 3692 5.546526 TGTTATAAGATGTGTGTGTGCTGA 58.453 37.500 0.00 0.00 0.00 4.26
3262 3693 5.861222 TGTTATAAGATGTGTGTGTGCTG 57.139 39.130 0.00 0.00 0.00 4.41
3263 3694 6.172630 TGATGTTATAAGATGTGTGTGTGCT 58.827 36.000 0.00 0.00 0.00 4.40
3264 3695 6.421377 TGATGTTATAAGATGTGTGTGTGC 57.579 37.500 0.00 0.00 0.00 4.57
3266 3697 9.494271 GGATATGATGTTATAAGATGTGTGTGT 57.506 33.333 0.00 0.00 0.00 3.72
3267 3698 9.492973 TGGATATGATGTTATAAGATGTGTGTG 57.507 33.333 0.00 0.00 0.00 3.82
3272 3703 9.182214 GCCATTGGATATGATGTTATAAGATGT 57.818 33.333 6.95 0.00 0.00 3.06
3273 3704 9.404848 AGCCATTGGATATGATGTTATAAGATG 57.595 33.333 6.95 0.00 0.00 2.90
3281 3712 9.812347 TCTTTTATAGCCATTGGATATGATGTT 57.188 29.630 21.07 0.00 34.94 2.71
3282 3713 9.986157 ATCTTTTATAGCCATTGGATATGATGT 57.014 29.630 21.07 0.42 34.94 3.06
3289 3720 8.945195 TCATTCATCTTTTATAGCCATTGGAT 57.055 30.769 6.95 1.78 0.00 3.41
3290 3721 8.219868 TCTCATTCATCTTTTATAGCCATTGGA 58.780 33.333 6.95 0.00 0.00 3.53
3291 3722 8.295288 GTCTCATTCATCTTTTATAGCCATTGG 58.705 37.037 0.00 0.00 0.00 3.16
3292 3723 8.295288 GGTCTCATTCATCTTTTATAGCCATTG 58.705 37.037 0.00 0.00 0.00 2.82
3293 3724 8.000709 TGGTCTCATTCATCTTTTATAGCCATT 58.999 33.333 0.00 0.00 0.00 3.16
3294 3725 7.520798 TGGTCTCATTCATCTTTTATAGCCAT 58.479 34.615 0.00 0.00 0.00 4.40
3295 3726 6.899089 TGGTCTCATTCATCTTTTATAGCCA 58.101 36.000 0.00 0.00 0.00 4.75
3296 3727 7.807977 TTGGTCTCATTCATCTTTTATAGCC 57.192 36.000 0.00 0.00 0.00 3.93
3334 3765 5.046304 AGCCTGTTTTGCTAGAACTCATCTA 60.046 40.000 0.00 0.00 39.71 1.98
3335 3766 4.006319 GCCTGTTTTGCTAGAACTCATCT 58.994 43.478 0.00 0.00 42.48 2.90
3336 3767 4.006319 AGCCTGTTTTGCTAGAACTCATC 58.994 43.478 0.00 0.00 37.28 2.92
3337 3768 4.026356 AGCCTGTTTTGCTAGAACTCAT 57.974 40.909 0.00 0.00 37.28 2.90
3338 3769 3.492102 AGCCTGTTTTGCTAGAACTCA 57.508 42.857 0.00 0.00 37.28 3.41
3339 3770 4.837896 AAAGCCTGTTTTGCTAGAACTC 57.162 40.909 0.00 0.00 38.34 3.01
3340 3771 4.889995 AGAAAAGCCTGTTTTGCTAGAACT 59.110 37.500 0.00 0.00 38.34 3.01
3341 3772 5.188327 AGAAAAGCCTGTTTTGCTAGAAC 57.812 39.130 0.00 0.00 38.34 3.01
3342 3773 5.852282 AAGAAAAGCCTGTTTTGCTAGAA 57.148 34.783 0.00 0.00 38.34 2.10
3343 3774 6.515035 GCTTAAGAAAAGCCTGTTTTGCTAGA 60.515 38.462 6.67 0.00 38.34 2.43
3344 3775 5.631096 GCTTAAGAAAAGCCTGTTTTGCTAG 59.369 40.000 6.67 0.00 38.34 3.42
3345 3776 5.068460 TGCTTAAGAAAAGCCTGTTTTGCTA 59.932 36.000 6.67 0.00 42.36 3.49
3346 3777 4.141959 TGCTTAAGAAAAGCCTGTTTTGCT 60.142 37.500 6.67 0.00 42.36 3.91
3347 3778 4.025730 GTGCTTAAGAAAAGCCTGTTTTGC 60.026 41.667 6.67 0.00 42.36 3.68
3348 3779 4.507756 GGTGCTTAAGAAAAGCCTGTTTTG 59.492 41.667 6.67 0.00 42.36 2.44
3349 3780 4.693283 GGTGCTTAAGAAAAGCCTGTTTT 58.307 39.130 6.67 0.00 42.36 2.43
3350 3781 3.243401 CGGTGCTTAAGAAAAGCCTGTTT 60.243 43.478 6.67 0.00 42.36 2.83
3351 3782 2.293399 CGGTGCTTAAGAAAAGCCTGTT 59.707 45.455 6.67 0.00 42.36 3.16
3352 3783 1.880027 CGGTGCTTAAGAAAAGCCTGT 59.120 47.619 6.67 0.00 42.36 4.00
3353 3784 1.200020 CCGGTGCTTAAGAAAAGCCTG 59.800 52.381 6.67 4.28 42.36 4.85
3354 3785 1.202891 ACCGGTGCTTAAGAAAAGCCT 60.203 47.619 6.12 0.00 42.36 4.58
3355 3786 1.068541 CACCGGTGCTTAAGAAAAGCC 60.069 52.381 24.02 0.00 42.36 4.35
3356 3787 2.331809 CACCGGTGCTTAAGAAAAGC 57.668 50.000 24.02 2.81 43.29 3.51
3368 3799 2.418628 CCTGTACAAATAAGCACCGGTG 59.581 50.000 30.66 30.66 0.00 4.94
3369 3800 2.303600 TCCTGTACAAATAAGCACCGGT 59.696 45.455 0.00 0.00 0.00 5.28
3370 3801 2.980568 TCCTGTACAAATAAGCACCGG 58.019 47.619 0.00 0.00 0.00 5.28
3371 3802 5.462398 GTCTATCCTGTACAAATAAGCACCG 59.538 44.000 0.00 0.00 0.00 4.94
3372 3803 5.462398 CGTCTATCCTGTACAAATAAGCACC 59.538 44.000 0.00 0.00 0.00 5.01
3373 3804 5.050972 GCGTCTATCCTGTACAAATAAGCAC 60.051 44.000 0.00 0.00 0.00 4.40
3374 3805 5.047847 GCGTCTATCCTGTACAAATAAGCA 58.952 41.667 0.00 0.00 0.00 3.91
3375 3806 5.290386 AGCGTCTATCCTGTACAAATAAGC 58.710 41.667 0.00 4.79 0.00 3.09
3376 3807 8.753175 GTTAAGCGTCTATCCTGTACAAATAAG 58.247 37.037 0.00 0.00 0.00 1.73
3377 3808 8.472413 AGTTAAGCGTCTATCCTGTACAAATAA 58.528 33.333 0.00 0.00 0.00 1.40
3378 3809 8.004087 AGTTAAGCGTCTATCCTGTACAAATA 57.996 34.615 0.00 0.00 0.00 1.40
3379 3810 6.875076 AGTTAAGCGTCTATCCTGTACAAAT 58.125 36.000 0.00 0.00 0.00 2.32
3380 3811 6.276832 AGTTAAGCGTCTATCCTGTACAAA 57.723 37.500 0.00 0.00 0.00 2.83
3381 3812 5.909621 AGTTAAGCGTCTATCCTGTACAA 57.090 39.130 0.00 0.00 0.00 2.41
3382 3813 7.024340 CTTAGTTAAGCGTCTATCCTGTACA 57.976 40.000 0.00 0.00 0.00 2.90
3396 3827 9.223557 TTCTACAGGAGAGACGCTTAGTTAAGC 62.224 44.444 12.72 12.72 44.08 3.09
3397 3828 4.705337 ACAGGAGAGACGCTTAGTTAAG 57.295 45.455 0.00 0.00 36.40 1.85
3398 3829 5.494724 TCTACAGGAGAGACGCTTAGTTAA 58.505 41.667 0.00 0.00 0.00 2.01
3399 3830 5.095145 TCTACAGGAGAGACGCTTAGTTA 57.905 43.478 0.00 0.00 0.00 2.24
3400 3831 3.952931 TCTACAGGAGAGACGCTTAGTT 58.047 45.455 0.00 0.00 0.00 2.24
3401 3832 3.630892 TCTACAGGAGAGACGCTTAGT 57.369 47.619 0.00 0.00 0.00 2.24
3402 3833 4.966965 TTTCTACAGGAGAGACGCTTAG 57.033 45.455 0.00 0.00 34.93 2.18
3403 3834 5.531659 CCTATTTCTACAGGAGAGACGCTTA 59.468 44.000 0.00 0.00 34.93 3.09
3404 3835 4.339814 CCTATTTCTACAGGAGAGACGCTT 59.660 45.833 0.00 0.00 34.93 4.68
3405 3836 3.886505 CCTATTTCTACAGGAGAGACGCT 59.113 47.826 0.00 0.00 34.93 5.07
3406 3837 3.551250 GCCTATTTCTACAGGAGAGACGC 60.551 52.174 0.00 0.00 34.93 5.19
3407 3838 3.632604 TGCCTATTTCTACAGGAGAGACG 59.367 47.826 0.00 0.00 34.93 4.18
3408 3839 4.202172 GGTGCCTATTTCTACAGGAGAGAC 60.202 50.000 0.00 0.00 34.93 3.36
3409 3840 3.961408 GGTGCCTATTTCTACAGGAGAGA 59.039 47.826 0.00 0.00 34.93 3.10
3410 3841 3.243569 CGGTGCCTATTTCTACAGGAGAG 60.244 52.174 0.00 0.00 34.93 3.20
3411 3842 2.693591 CGGTGCCTATTTCTACAGGAGA 59.306 50.000 0.00 0.00 33.42 3.71
3412 3843 2.224066 CCGGTGCCTATTTCTACAGGAG 60.224 54.545 0.00 0.00 33.42 3.69
3413 3844 1.760613 CCGGTGCCTATTTCTACAGGA 59.239 52.381 0.00 0.00 33.42 3.86
3414 3845 1.485066 ACCGGTGCCTATTTCTACAGG 59.515 52.381 6.12 0.00 35.04 4.00
3415 3846 2.550978 CACCGGTGCCTATTTCTACAG 58.449 52.381 24.02 0.00 0.00 2.74
3416 3847 2.684001 CACCGGTGCCTATTTCTACA 57.316 50.000 24.02 0.00 0.00 2.74
3428 3859 1.676006 AGTTTTTCTGAAGCACCGGTG 59.324 47.619 30.66 30.66 0.00 4.94
3429 3860 1.947456 GAGTTTTTCTGAAGCACCGGT 59.053 47.619 0.00 0.00 0.00 5.28
3430 3861 1.069906 CGAGTTTTTCTGAAGCACCGG 60.070 52.381 0.00 0.00 0.00 5.28
3431 3862 1.069906 CCGAGTTTTTCTGAAGCACCG 60.070 52.381 0.00 0.00 0.00 4.94
3432 3863 1.947456 ACCGAGTTTTTCTGAAGCACC 59.053 47.619 0.00 0.00 0.00 5.01
3433 3864 3.692791 AACCGAGTTTTTCTGAAGCAC 57.307 42.857 0.00 0.00 0.00 4.40
3434 3865 6.385649 AATAAACCGAGTTTTTCTGAAGCA 57.614 33.333 7.22 0.00 37.01 3.91
3435 3866 7.648112 AGAAAATAAACCGAGTTTTTCTGAAGC 59.352 33.333 8.29 0.00 43.26 3.86
3439 3870 8.902735 GCTTAGAAAATAAACCGAGTTTTTCTG 58.097 33.333 15.89 5.37 44.11 3.02
3440 3871 8.626526 TGCTTAGAAAATAAACCGAGTTTTTCT 58.373 29.630 12.47 12.47 45.45 2.52
3441 3872 8.688184 GTGCTTAGAAAATAAACCGAGTTTTTC 58.312 33.333 7.22 6.04 37.01 2.29
3442 3873 7.650504 GGTGCTTAGAAAATAAACCGAGTTTTT 59.349 33.333 7.22 0.00 37.01 1.94
3443 3874 7.013942 AGGTGCTTAGAAAATAAACCGAGTTTT 59.986 33.333 7.22 0.00 37.01 2.43
3444 3875 6.489022 AGGTGCTTAGAAAATAAACCGAGTTT 59.511 34.615 7.11 7.11 39.24 2.66
3445 3876 6.002082 AGGTGCTTAGAAAATAAACCGAGTT 58.998 36.000 0.00 0.00 0.00 3.01
3446 3877 5.557866 AGGTGCTTAGAAAATAAACCGAGT 58.442 37.500 0.00 0.00 0.00 4.18
3447 3878 5.064834 GGAGGTGCTTAGAAAATAAACCGAG 59.935 44.000 0.00 0.00 0.00 4.63
3448 3879 4.939439 GGAGGTGCTTAGAAAATAAACCGA 59.061 41.667 0.00 0.00 0.00 4.69
3449 3880 4.095932 GGGAGGTGCTTAGAAAATAAACCG 59.904 45.833 0.00 0.00 0.00 4.44
3450 3881 5.262009 AGGGAGGTGCTTAGAAAATAAACC 58.738 41.667 0.00 0.00 0.00 3.27
3451 3882 7.415318 GCTTAGGGAGGTGCTTAGAAAATAAAC 60.415 40.741 0.00 0.00 0.00 2.01
3452 3883 6.602009 GCTTAGGGAGGTGCTTAGAAAATAAA 59.398 38.462 0.00 0.00 0.00 1.40
3453 3884 6.120220 GCTTAGGGAGGTGCTTAGAAAATAA 58.880 40.000 0.00 0.00 0.00 1.40
3454 3885 5.190925 TGCTTAGGGAGGTGCTTAGAAAATA 59.809 40.000 0.00 0.00 0.00 1.40
3455 3886 4.018415 TGCTTAGGGAGGTGCTTAGAAAAT 60.018 41.667 0.00 0.00 0.00 1.82
3456 3887 3.329520 TGCTTAGGGAGGTGCTTAGAAAA 59.670 43.478 0.00 0.00 0.00 2.29
3457 3888 2.910319 TGCTTAGGGAGGTGCTTAGAAA 59.090 45.455 0.00 0.00 0.00 2.52
3458 3889 2.546899 TGCTTAGGGAGGTGCTTAGAA 58.453 47.619 0.00 0.00 0.00 2.10
3459 3890 2.247699 TGCTTAGGGAGGTGCTTAGA 57.752 50.000 0.00 0.00 0.00 2.10
3460 3891 2.703007 AGATGCTTAGGGAGGTGCTTAG 59.297 50.000 0.00 0.00 0.00 2.18
3461 3892 2.700897 GAGATGCTTAGGGAGGTGCTTA 59.299 50.000 0.00 0.00 0.00 3.09
3462 3893 1.488393 GAGATGCTTAGGGAGGTGCTT 59.512 52.381 0.00 0.00 0.00 3.91
3463 3894 1.127343 GAGATGCTTAGGGAGGTGCT 58.873 55.000 0.00 0.00 0.00 4.40
3464 3895 0.107643 GGAGATGCTTAGGGAGGTGC 59.892 60.000 0.00 0.00 0.00 5.01
3465 3896 0.761802 GGGAGATGCTTAGGGAGGTG 59.238 60.000 0.00 0.00 0.00 4.00
3466 3897 0.343372 TGGGAGATGCTTAGGGAGGT 59.657 55.000 0.00 0.00 0.00 3.85
3467 3898 1.739750 ATGGGAGATGCTTAGGGAGG 58.260 55.000 0.00 0.00 0.00 4.30
3468 3899 2.441001 ACAATGGGAGATGCTTAGGGAG 59.559 50.000 0.00 0.00 0.00 4.30
3469 3900 2.492025 ACAATGGGAGATGCTTAGGGA 58.508 47.619 0.00 0.00 0.00 4.20
3470 3901 4.647564 ATACAATGGGAGATGCTTAGGG 57.352 45.455 0.00 0.00 0.00 3.53
3471 3902 6.176183 CCTTATACAATGGGAGATGCTTAGG 58.824 44.000 0.00 0.00 0.00 2.69
3472 3903 5.645497 GCCTTATACAATGGGAGATGCTTAG 59.355 44.000 0.00 0.00 0.00 2.18
3473 3904 5.514834 GGCCTTATACAATGGGAGATGCTTA 60.515 44.000 0.00 0.00 0.00 3.09
3474 3905 4.401925 GCCTTATACAATGGGAGATGCTT 58.598 43.478 0.00 0.00 0.00 3.91
3475 3906 3.245052 GGCCTTATACAATGGGAGATGCT 60.245 47.826 0.00 0.00 0.00 3.79
3476 3907 3.084786 GGCCTTATACAATGGGAGATGC 58.915 50.000 0.00 0.00 0.00 3.91
3477 3908 4.647564 AGGCCTTATACAATGGGAGATG 57.352 45.455 0.00 0.00 0.00 2.90
3478 3909 5.852250 ACTAAGGCCTTATACAATGGGAGAT 59.148 40.000 25.37 0.00 0.00 2.75
3479 3910 5.071788 CACTAAGGCCTTATACAATGGGAGA 59.928 44.000 25.37 0.36 0.00 3.71
3480 3911 5.071788 TCACTAAGGCCTTATACAATGGGAG 59.928 44.000 25.37 13.70 0.00 4.30
3481 3912 4.972568 TCACTAAGGCCTTATACAATGGGA 59.027 41.667 25.37 15.87 0.00 4.37
3482 3913 5.304686 TCACTAAGGCCTTATACAATGGG 57.695 43.478 25.37 13.78 0.00 4.00
3483 3914 4.757149 GCTCACTAAGGCCTTATACAATGG 59.243 45.833 25.37 14.04 0.00 3.16
3484 3915 5.368145 TGCTCACTAAGGCCTTATACAATG 58.632 41.667 25.37 17.10 0.00 2.82
3485 3916 5.630415 TGCTCACTAAGGCCTTATACAAT 57.370 39.130 25.37 6.61 0.00 2.71
3486 3917 5.429681 TTGCTCACTAAGGCCTTATACAA 57.570 39.130 25.37 19.55 0.00 2.41
3487 3918 5.630415 ATTGCTCACTAAGGCCTTATACA 57.370 39.130 25.37 15.37 0.00 2.29
3488 3919 5.470437 GGAATTGCTCACTAAGGCCTTATAC 59.530 44.000 25.37 13.16 0.00 1.47
3489 3920 5.456186 GGGAATTGCTCACTAAGGCCTTATA 60.456 44.000 25.37 12.93 0.00 0.98
3490 3921 4.464947 GGAATTGCTCACTAAGGCCTTAT 58.535 43.478 25.37 12.82 0.00 1.73
3491 3922 3.371595 GGGAATTGCTCACTAAGGCCTTA 60.372 47.826 23.79 23.79 0.00 2.69
3492 3923 2.621668 GGGAATTGCTCACTAAGGCCTT 60.622 50.000 24.18 24.18 0.00 4.35
3493 3924 1.064389 GGGAATTGCTCACTAAGGCCT 60.064 52.381 0.00 0.00 0.00 5.19
3494 3925 1.393603 GGGAATTGCTCACTAAGGCC 58.606 55.000 0.00 0.00 0.00 5.19
3495 3926 1.393603 GGGGAATTGCTCACTAAGGC 58.606 55.000 0.00 0.00 0.00 4.35
3496 3927 1.284785 TGGGGGAATTGCTCACTAAGG 59.715 52.381 0.00 0.00 0.00 2.69
3550 3981 4.513442 TGATCTAGTGGAATTGGGAAACG 58.487 43.478 0.00 0.00 0.00 3.60
3566 3997 8.724229 CATGAAGAAGTTGTTCACATTGATCTA 58.276 33.333 16.88 0.00 36.76 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.