Multiple sequence alignment - TraesCS3B01G250100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G250100 chr3B 100.000 2837 0 0 1 2837 398963066 398965902 0.000000e+00 5240.0
1 TraesCS3B01G250100 chr3A 93.450 1893 82 15 970 2837 404199171 404201046 0.000000e+00 2771.0
2 TraesCS3B01G250100 chr3A 84.111 686 77 24 150 821 404197788 404198455 3.990000e-178 634.0
3 TraesCS3B01G250100 chr3A 90.698 86 7 1 883 967 501657403 501657488 2.310000e-21 113.0
4 TraesCS3B01G250100 chr3A 92.105 76 6 0 883 958 491524824 491524749 1.070000e-19 108.0
5 TraesCS3B01G250100 chr3D 95.836 1489 42 8 1185 2672 320824222 320822753 0.000000e+00 2388.0
6 TraesCS3B01G250100 chr3D 85.995 814 67 24 150 940 320827260 320826471 0.000000e+00 828.0
7 TraesCS3B01G250100 chr3D 95.897 195 6 2 971 1164 320825020 320824827 5.900000e-82 315.0
8 TraesCS3B01G250100 chr3D 92.105 76 6 0 883 958 70242034 70242109 1.070000e-19 108.0
9 TraesCS3B01G250100 chr2B 74.613 646 86 41 151 730 733096349 733096982 2.210000e-51 213.0
10 TraesCS3B01G250100 chr2B 100.000 38 0 0 2643 2680 787534104 787534141 1.410000e-08 71.3
11 TraesCS3B01G250100 chr4B 88.148 135 13 2 2702 2834 416545018 416545151 1.050000e-34 158.0
12 TraesCS3B01G250100 chr4B 90.244 82 5 1 877 958 366948792 366948714 1.390000e-18 104.0
13 TraesCS3B01G250100 chr7D 86.957 138 15 3 2701 2837 506676540 506676675 4.900000e-33 152.0
14 TraesCS3B01G250100 chr7D 86.567 134 15 3 2705 2837 159411950 159412081 8.190000e-31 145.0
15 TraesCS3B01G250100 chr7D 100.000 40 0 0 2641 2680 117268266 117268305 1.090000e-09 75.0
16 TraesCS3B01G250100 chr5D 87.786 131 15 1 2707 2837 218294560 218294431 4.900000e-33 152.0
17 TraesCS3B01G250100 chr5D 92.105 76 6 0 883 958 91657584 91657659 1.070000e-19 108.0
18 TraesCS3B01G250100 chr7A 87.218 133 15 2 2703 2834 553237133 553237264 1.760000e-32 150.0
19 TraesCS3B01G250100 chr4D 86.667 135 18 0 2703 2837 359676654 359676520 1.760000e-32 150.0
20 TraesCS3B01G250100 chr4D 90.000 80 8 0 883 962 495989415 495989336 1.390000e-18 104.0
21 TraesCS3B01G250100 chr1D 86.667 135 16 2 2704 2837 303528581 303528714 6.330000e-32 148.0
22 TraesCS3B01G250100 chr7B 86.364 132 16 2 2707 2837 706274016 706274146 2.950000e-30 143.0
23 TraesCS3B01G250100 chr7B 80.153 131 20 3 2259 2383 243871415 243871285 3.010000e-15 93.5
24 TraesCS3B01G250100 chr1B 92.308 78 6 0 883 960 570727538 570727461 8.310000e-21 111.0
25 TraesCS3B01G250100 chr1B 97.674 43 1 0 2638 2680 598846451 598846409 1.090000e-09 75.0
26 TraesCS3B01G250100 chr2A 89.412 85 9 0 873 957 18629837 18629753 1.070000e-19 108.0
27 TraesCS3B01G250100 chr6A 100.000 40 0 0 2641 2680 586768401 586768362 1.090000e-09 75.0
28 TraesCS3B01G250100 chr2D 97.674 43 1 0 2638 2680 446655492 446655450 1.090000e-09 75.0
29 TraesCS3B01G250100 chr6D 100.000 38 0 0 2643 2680 312187557 312187520 1.410000e-08 71.3
30 TraesCS3B01G250100 chr6B 95.349 43 2 0 2638 2680 659044366 659044408 5.070000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G250100 chr3B 398963066 398965902 2836 False 5240.0 5240 100.0000 1 2837 1 chr3B.!!$F1 2836
1 TraesCS3B01G250100 chr3A 404197788 404201046 3258 False 1702.5 2771 88.7805 150 2837 2 chr3A.!!$F2 2687
2 TraesCS3B01G250100 chr3D 320822753 320827260 4507 True 1177.0 2388 92.5760 150 2672 3 chr3D.!!$R1 2522
3 TraesCS3B01G250100 chr2B 733096349 733096982 633 False 213.0 213 74.6130 151 730 1 chr2B.!!$F1 579

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
104 105 0.108615 CTAAGCACCCAGACGTGAGG 60.109 60.0 0.0 0.0 35.68 3.86 F
146 147 0.249826 AGCATTTGTTGGCAAACGGG 60.250 50.0 0.0 0.0 45.99 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1562 4097 1.045407 CATGCATAGCCTTTGCCCAT 58.955 50.000 0.0 0.0 39.39 4.00 R
2122 4658 2.040544 GTGGCCCCTTGTCATCACG 61.041 63.158 0.0 0.0 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.723942 AACCTGAGTAGCTTTATAATCTGTTG 57.276 34.615 0.00 0.00 0.00 3.33
26 27 7.275920 ACCTGAGTAGCTTTATAATCTGTTGG 58.724 38.462 0.00 0.00 0.00 3.77
27 28 7.125811 ACCTGAGTAGCTTTATAATCTGTTGGA 59.874 37.037 0.00 0.00 0.00 3.53
28 29 7.655328 CCTGAGTAGCTTTATAATCTGTTGGAG 59.345 40.741 0.00 0.00 0.00 3.86
29 30 6.986817 TGAGTAGCTTTATAATCTGTTGGAGC 59.013 38.462 0.00 0.00 0.00 4.70
30 31 7.130681 AGTAGCTTTATAATCTGTTGGAGCT 57.869 36.000 8.61 8.61 41.59 4.09
31 32 7.569240 AGTAGCTTTATAATCTGTTGGAGCTT 58.431 34.615 8.81 0.00 39.65 3.74
32 33 6.934048 AGCTTTATAATCTGTTGGAGCTTC 57.066 37.500 0.00 0.00 35.89 3.86
33 34 6.657875 AGCTTTATAATCTGTTGGAGCTTCT 58.342 36.000 0.00 0.00 35.89 2.85
34 35 6.765512 AGCTTTATAATCTGTTGGAGCTTCTC 59.234 38.462 0.00 0.00 35.89 2.87
35 36 6.765512 GCTTTATAATCTGTTGGAGCTTCTCT 59.234 38.462 0.00 0.00 0.00 3.10
36 37 7.281999 GCTTTATAATCTGTTGGAGCTTCTCTT 59.718 37.037 0.00 0.00 0.00 2.85
37 38 9.171877 CTTTATAATCTGTTGGAGCTTCTCTTT 57.828 33.333 0.00 0.00 0.00 2.52
38 39 6.998968 ATAATCTGTTGGAGCTTCTCTTTG 57.001 37.500 0.00 0.00 0.00 2.77
39 40 3.845781 TCTGTTGGAGCTTCTCTTTGT 57.154 42.857 0.00 0.00 0.00 2.83
40 41 4.156455 TCTGTTGGAGCTTCTCTTTGTT 57.844 40.909 0.00 0.00 0.00 2.83
41 42 4.526970 TCTGTTGGAGCTTCTCTTTGTTT 58.473 39.130 0.00 0.00 0.00 2.83
42 43 5.680619 TCTGTTGGAGCTTCTCTTTGTTTA 58.319 37.500 0.00 0.00 0.00 2.01
43 44 5.760253 TCTGTTGGAGCTTCTCTTTGTTTAG 59.240 40.000 0.00 0.00 0.00 1.85
44 45 4.275936 TGTTGGAGCTTCTCTTTGTTTAGC 59.724 41.667 0.00 0.00 0.00 3.09
45 46 3.412386 TGGAGCTTCTCTTTGTTTAGCC 58.588 45.455 0.00 0.00 32.36 3.93
46 47 3.073062 TGGAGCTTCTCTTTGTTTAGCCT 59.927 43.478 0.00 0.00 32.36 4.58
47 48 4.075682 GGAGCTTCTCTTTGTTTAGCCTT 58.924 43.478 0.00 0.00 32.36 4.35
48 49 4.083057 GGAGCTTCTCTTTGTTTAGCCTTG 60.083 45.833 0.00 0.00 32.36 3.61
49 50 4.464947 AGCTTCTCTTTGTTTAGCCTTGT 58.535 39.130 0.00 0.00 32.36 3.16
50 51 5.621193 AGCTTCTCTTTGTTTAGCCTTGTA 58.379 37.500 0.00 0.00 32.36 2.41
51 52 6.241645 AGCTTCTCTTTGTTTAGCCTTGTAT 58.758 36.000 0.00 0.00 32.36 2.29
52 53 6.717084 AGCTTCTCTTTGTTTAGCCTTGTATT 59.283 34.615 0.00 0.00 32.36 1.89
53 54 6.803807 GCTTCTCTTTGTTTAGCCTTGTATTG 59.196 38.462 0.00 0.00 0.00 1.90
54 55 7.522236 GCTTCTCTTTGTTTAGCCTTGTATTGT 60.522 37.037 0.00 0.00 0.00 2.71
55 56 8.911918 TTCTCTTTGTTTAGCCTTGTATTGTA 57.088 30.769 0.00 0.00 0.00 2.41
56 57 8.547967 TCTCTTTGTTTAGCCTTGTATTGTAG 57.452 34.615 0.00 0.00 0.00 2.74
57 58 8.372459 TCTCTTTGTTTAGCCTTGTATTGTAGA 58.628 33.333 0.00 0.00 0.00 2.59
58 59 8.547967 TCTTTGTTTAGCCTTGTATTGTAGAG 57.452 34.615 0.00 0.00 0.00 2.43
59 60 6.737254 TTGTTTAGCCTTGTATTGTAGAGC 57.263 37.500 0.00 0.00 0.00 4.09
60 61 5.183228 TGTTTAGCCTTGTATTGTAGAGCC 58.817 41.667 0.00 0.00 0.00 4.70
61 62 4.417426 TTAGCCTTGTATTGTAGAGCCC 57.583 45.455 0.00 0.00 0.00 5.19
62 63 2.196595 AGCCTTGTATTGTAGAGCCCA 58.803 47.619 0.00 0.00 0.00 5.36
63 64 2.171448 AGCCTTGTATTGTAGAGCCCAG 59.829 50.000 0.00 0.00 0.00 4.45
64 65 2.565841 CCTTGTATTGTAGAGCCCAGC 58.434 52.381 0.00 0.00 0.00 4.85
65 66 2.171448 CCTTGTATTGTAGAGCCCAGCT 59.829 50.000 0.00 0.00 43.88 4.24
66 67 3.370953 CCTTGTATTGTAGAGCCCAGCTT 60.371 47.826 0.00 0.00 39.88 3.74
67 68 4.265073 CTTGTATTGTAGAGCCCAGCTTT 58.735 43.478 0.00 0.00 39.88 3.51
68 69 5.428253 CTTGTATTGTAGAGCCCAGCTTTA 58.572 41.667 0.00 0.00 39.88 1.85
69 70 5.630415 TGTATTGTAGAGCCCAGCTTTAT 57.370 39.130 0.00 0.00 39.88 1.40
70 71 5.368145 TGTATTGTAGAGCCCAGCTTTATG 58.632 41.667 0.00 0.00 39.88 1.90
71 72 2.332063 TGTAGAGCCCAGCTTTATGC 57.668 50.000 0.00 0.00 39.88 3.14
84 85 4.616181 GCTTTATGCGGCTTAAGAAAGA 57.384 40.909 6.67 0.00 34.37 2.52
85 86 4.343609 GCTTTATGCGGCTTAAGAAAGAC 58.656 43.478 6.67 0.00 37.39 3.01
86 87 4.095036 GCTTTATGCGGCTTAAGAAAGACT 59.905 41.667 6.67 0.00 38.75 3.24
87 88 5.293569 GCTTTATGCGGCTTAAGAAAGACTA 59.706 40.000 6.67 0.00 38.75 2.59
88 89 6.183360 GCTTTATGCGGCTTAAGAAAGACTAA 60.183 38.462 6.67 0.00 38.75 2.24
89 90 6.903883 TTATGCGGCTTAAGAAAGACTAAG 57.096 37.500 6.67 0.00 38.75 2.18
90 91 3.000727 TGCGGCTTAAGAAAGACTAAGC 58.999 45.455 6.67 5.46 38.75 3.09
91 92 3.000727 GCGGCTTAAGAAAGACTAAGCA 58.999 45.455 6.67 0.00 44.70 3.91
92 93 3.181519 GCGGCTTAAGAAAGACTAAGCAC 60.182 47.826 6.67 4.03 44.70 4.40
93 94 3.371285 CGGCTTAAGAAAGACTAAGCACC 59.629 47.826 6.67 0.00 44.70 5.01
94 95 3.690139 GGCTTAAGAAAGACTAAGCACCC 59.310 47.826 6.67 0.00 44.70 4.61
95 96 4.324267 GCTTAAGAAAGACTAAGCACCCA 58.676 43.478 6.67 0.00 43.02 4.51
96 97 4.393371 GCTTAAGAAAGACTAAGCACCCAG 59.607 45.833 6.67 0.00 43.02 4.45
97 98 5.794894 CTTAAGAAAGACTAAGCACCCAGA 58.205 41.667 0.00 0.00 34.37 3.86
98 99 3.686916 AGAAAGACTAAGCACCCAGAC 57.313 47.619 0.00 0.00 0.00 3.51
99 100 2.028930 AGAAAGACTAAGCACCCAGACG 60.029 50.000 0.00 0.00 0.00 4.18
100 101 1.339097 AAGACTAAGCACCCAGACGT 58.661 50.000 0.00 0.00 0.00 4.34
101 102 0.603569 AGACTAAGCACCCAGACGTG 59.396 55.000 0.00 0.00 36.80 4.49
102 103 0.601558 GACTAAGCACCCAGACGTGA 59.398 55.000 0.00 0.00 35.68 4.35
103 104 0.603569 ACTAAGCACCCAGACGTGAG 59.396 55.000 0.00 0.00 35.68 3.51
104 105 0.108615 CTAAGCACCCAGACGTGAGG 60.109 60.000 0.00 0.00 35.68 3.86
105 106 2.167398 TAAGCACCCAGACGTGAGGC 62.167 60.000 0.00 0.00 42.06 4.70
107 108 4.742201 CACCCAGACGTGAGGCCG 62.742 72.222 0.00 0.00 43.69 6.13
111 112 3.461773 CAGACGTGAGGCCGGGAT 61.462 66.667 2.18 0.00 43.69 3.85
112 113 2.125326 CAGACGTGAGGCCGGGATA 61.125 63.158 2.18 0.00 43.69 2.59
113 114 1.380785 AGACGTGAGGCCGGGATAA 60.381 57.895 2.18 0.00 43.69 1.75
114 115 1.227176 GACGTGAGGCCGGGATAAC 60.227 63.158 2.18 0.00 0.00 1.89
115 116 2.279252 CGTGAGGCCGGGATAACG 60.279 66.667 2.18 0.00 0.00 3.18
123 124 4.959446 CGGGATAACGGACGGATC 57.041 61.111 0.00 0.00 0.00 3.36
124 125 1.288127 CGGGATAACGGACGGATCC 59.712 63.158 15.48 15.48 42.28 3.36
125 126 1.177256 CGGGATAACGGACGGATCCT 61.177 60.000 20.19 0.00 43.73 3.24
126 127 1.883638 CGGGATAACGGACGGATCCTA 60.884 57.143 20.19 0.00 43.73 2.94
127 128 2.242043 GGGATAACGGACGGATCCTAA 58.758 52.381 20.19 0.00 43.73 2.69
128 129 2.230750 GGGATAACGGACGGATCCTAAG 59.769 54.545 20.19 1.02 43.73 2.18
129 130 2.352519 GGATAACGGACGGATCCTAAGC 60.353 54.545 10.75 0.00 43.73 3.09
130 131 1.766494 TAACGGACGGATCCTAAGCA 58.234 50.000 10.75 0.00 43.73 3.91
131 132 1.120530 AACGGACGGATCCTAAGCAT 58.879 50.000 10.75 0.00 43.73 3.79
132 133 1.120530 ACGGACGGATCCTAAGCATT 58.879 50.000 10.75 0.00 43.73 3.56
133 134 1.485066 ACGGACGGATCCTAAGCATTT 59.515 47.619 10.75 0.00 43.73 2.32
134 135 1.867233 CGGACGGATCCTAAGCATTTG 59.133 52.381 10.75 0.00 43.73 2.32
135 136 2.741878 CGGACGGATCCTAAGCATTTGT 60.742 50.000 10.75 0.00 43.73 2.83
136 137 3.279434 GGACGGATCCTAAGCATTTGTT 58.721 45.455 10.75 0.00 42.45 2.83
137 138 3.065371 GGACGGATCCTAAGCATTTGTTG 59.935 47.826 10.75 0.00 42.45 3.33
138 139 3.016736 ACGGATCCTAAGCATTTGTTGG 58.983 45.455 10.75 0.00 0.00 3.77
139 140 2.223572 CGGATCCTAAGCATTTGTTGGC 60.224 50.000 10.75 0.00 0.00 4.52
140 141 2.760092 GGATCCTAAGCATTTGTTGGCA 59.240 45.455 3.84 0.00 0.00 4.92
141 142 3.195396 GGATCCTAAGCATTTGTTGGCAA 59.805 43.478 3.84 0.00 0.00 4.52
143 144 3.988819 TCCTAAGCATTTGTTGGCAAAC 58.011 40.909 0.00 0.00 45.99 2.93
144 145 2.730928 CCTAAGCATTTGTTGGCAAACG 59.269 45.455 0.00 0.00 45.99 3.60
145 146 1.580815 AAGCATTTGTTGGCAAACGG 58.419 45.000 0.00 0.00 45.99 4.44
146 147 0.249826 AGCATTTGTTGGCAAACGGG 60.250 50.000 0.00 0.00 45.99 5.28
147 148 1.840630 GCATTTGTTGGCAAACGGGC 61.841 55.000 0.00 0.00 45.99 6.13
148 149 1.300542 ATTTGTTGGCAAACGGGCG 60.301 52.632 0.00 0.00 45.99 6.13
171 172 2.417719 GTGCCATGAAGAAGTCGAACT 58.582 47.619 0.00 0.00 0.00 3.01
174 175 2.413371 GCCATGAAGAAGTCGAACTTGC 60.413 50.000 0.00 0.62 38.80 4.01
269 270 9.937175 CCTATTCGTCTTTTATTTGATCCTTTC 57.063 33.333 0.00 0.00 0.00 2.62
273 274 9.893305 TTCGTCTTTTATTTGATCCTTTCTTTC 57.107 29.630 0.00 0.00 0.00 2.62
274 275 9.284968 TCGTCTTTTATTTGATCCTTTCTTTCT 57.715 29.630 0.00 0.00 0.00 2.52
763 907 2.287308 CCGGATCAACAACAAAAAGCGA 60.287 45.455 0.00 0.00 0.00 4.93
821 968 1.203928 AAGCGAGCGATCGAAATCAG 58.796 50.000 29.29 10.25 34.64 2.90
827 974 2.464865 AGCGATCGAAATCAGCAGTAC 58.535 47.619 21.57 0.00 35.36 2.73
829 976 1.781429 CGATCGAAATCAGCAGTACCG 59.219 52.381 10.26 0.00 31.76 4.02
851 1137 0.385098 CGTTTTCGTTTTCCCGAGCC 60.385 55.000 0.00 0.00 38.23 4.70
875 1163 2.463876 CAGTAGCGATCGAATTCAGCA 58.536 47.619 21.57 0.00 0.00 4.41
881 1169 0.579156 GATCGAATTCAGCACGCTCC 59.421 55.000 6.22 0.00 0.00 4.70
960 1248 4.541648 GGCTAGGAGCTCCCGGGA 62.542 72.222 29.54 25.06 41.99 5.14
963 1251 1.252215 GCTAGGAGCTCCCGGGATAC 61.252 65.000 29.54 19.80 38.45 2.24
1004 2946 2.192175 GGATAACCCACCCGGCTG 59.808 66.667 0.00 0.00 33.26 4.85
1260 3785 2.801342 GCCTTTGCTCTGACTCCGATAG 60.801 54.545 0.00 0.00 33.53 2.08
1279 3804 1.816835 AGCATCCAATCTGCACTGTTG 59.183 47.619 0.00 0.00 42.15 3.33
1375 3900 1.516386 CCACGGTCGAATGGTCTCG 60.516 63.158 0.00 0.00 40.25 4.04
1490 4015 2.362397 TGCTGCTGGATGCTACTAGTAC 59.638 50.000 0.00 0.00 43.37 2.73
1491 4016 2.625790 GCTGCTGGATGCTACTAGTACT 59.374 50.000 0.00 0.00 43.37 2.73
1492 4017 3.821600 GCTGCTGGATGCTACTAGTACTA 59.178 47.826 1.89 1.89 43.37 1.82
1562 4097 1.081041 CAGCGCTGCTTGAATTGCA 60.081 52.632 26.68 0.00 36.40 4.08
1730 4265 3.788937 AGGCATTGTATTTTGCTCATGC 58.211 40.909 0.00 0.00 38.88 4.06
1917 4453 8.993121 TCTCAGTTCATTGAGTTTTCAGATAAC 58.007 33.333 3.26 0.00 43.96 1.89
1920 4456 8.282592 CAGTTCATTGAGTTTTCAGATAACGAA 58.717 33.333 0.00 0.00 34.15 3.85
1997 4533 7.928307 ACCATAACCTGATTGTATATGCATC 57.072 36.000 0.19 0.00 0.00 3.91
2080 4616 5.001232 AGTTTGGAAATTAACTCGCTGCTA 58.999 37.500 0.00 0.00 0.00 3.49
2081 4617 5.122396 AGTTTGGAAATTAACTCGCTGCTAG 59.878 40.000 0.00 0.00 0.00 3.42
2082 4618 4.202245 TGGAAATTAACTCGCTGCTAGT 57.798 40.909 0.37 0.37 0.00 2.57
2083 4619 5.333299 TGGAAATTAACTCGCTGCTAGTA 57.667 39.130 7.28 0.00 0.00 1.82
2084 4620 5.107133 TGGAAATTAACTCGCTGCTAGTAC 58.893 41.667 7.28 0.00 0.00 2.73
2140 4676 2.040544 CGTGATGACAAGGGGCCAC 61.041 63.158 4.39 0.00 0.00 5.01
2233 4769 8.519526 TGGGTAGCAATTTCTTTTAACATGTAG 58.480 33.333 0.00 0.00 0.00 2.74
2234 4770 8.520351 GGGTAGCAATTTCTTTTAACATGTAGT 58.480 33.333 0.00 0.00 0.00 2.73
2249 4785 6.301687 ACATGTAGTATGTAGTGACGCTAG 57.698 41.667 0.00 0.00 0.00 3.42
2256 4792 2.511659 TGTAGTGACGCTAGTTGGTCT 58.488 47.619 0.00 0.21 34.31 3.85
2269 4805 2.701951 AGTTGGTCTTAAGTCAACGGGA 59.298 45.455 24.27 3.75 43.70 5.14
2283 4819 2.493278 CAACGGGAATCATTTCTTGGCT 59.507 45.455 0.00 0.00 32.16 4.75
2414 4952 2.287769 GAGAGCTGGCCATTTCTCTTC 58.712 52.381 27.29 18.30 36.17 2.87
2538 5076 4.225717 AGGAAAATTAACTACGCCCCAGTA 59.774 41.667 0.00 0.00 0.00 2.74
2544 5082 0.613853 ACTACGCCCCAGTAGCTCAA 60.614 55.000 0.00 0.00 45.87 3.02
2555 5093 4.813161 CCCAGTAGCTCAACTATGTGAATG 59.187 45.833 0.00 0.00 32.15 2.67
2563 5101 4.264253 TCAACTATGTGAATGCTTGAGGG 58.736 43.478 0.00 0.00 0.00 4.30
2566 5104 0.333993 ATGTGAATGCTTGAGGGCCT 59.666 50.000 5.25 5.25 0.00 5.19
2567 5105 0.322816 TGTGAATGCTTGAGGGCCTC 60.323 55.000 26.95 26.95 0.00 4.70
2586 5124 6.223852 GGCCTCGTCTCTAAAATATGAATGA 58.776 40.000 0.00 0.00 0.00 2.57
2638 5176 1.136305 GTTGCTCAGCTACCACGGATA 59.864 52.381 0.00 0.00 0.00 2.59
2639 5177 0.744874 TGCTCAGCTACCACGGATAC 59.255 55.000 0.00 0.00 0.00 2.24
2652 5202 2.028930 CACGGATACTTAGGGCATCTCC 60.029 54.545 0.00 0.00 0.00 3.71
2680 5230 1.433837 CCCGTAAATTTCCTCCCGCG 61.434 60.000 0.00 0.00 0.00 6.46
2681 5231 1.433837 CCGTAAATTTCCTCCCGCGG 61.434 60.000 21.04 21.04 0.00 6.46
2684 5234 2.199613 TAAATTTCCTCCCGCGGCCA 62.200 55.000 22.85 7.33 0.00 5.36
2715 5265 3.707102 GACTGGTCTACTTAGGGCATCTT 59.293 47.826 0.00 0.00 0.00 2.40
2754 5304 4.873129 CTCCCGCATCCGTCCGTG 62.873 72.222 0.00 0.00 0.00 4.94
2759 5309 2.452813 CGCATCCGTCCGTGGAAAG 61.453 63.158 0.00 0.00 42.46 2.62
2765 5315 2.350134 GTCCGTGGAAAGGGGGAC 59.650 66.667 0.00 0.00 41.84 4.46
2766 5316 2.206036 TCCGTGGAAAGGGGGACT 59.794 61.111 0.00 0.00 35.56 3.85
2811 5361 1.216977 CGTCATCCAACCGTAGCCA 59.783 57.895 0.00 0.00 0.00 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.770897 CCAACAGATTATAAAGCTACTCAGGTT 59.229 37.037 0.00 0.00 44.28 3.50
1 2 7.125811 TCCAACAGATTATAAAGCTACTCAGGT 59.874 37.037 0.00 0.00 0.00 4.00
2 3 7.500992 TCCAACAGATTATAAAGCTACTCAGG 58.499 38.462 0.00 0.00 0.00 3.86
3 4 7.170658 GCTCCAACAGATTATAAAGCTACTCAG 59.829 40.741 0.00 0.00 0.00 3.35
4 5 6.986817 GCTCCAACAGATTATAAAGCTACTCA 59.013 38.462 0.00 0.00 0.00 3.41
5 6 7.213678 AGCTCCAACAGATTATAAAGCTACTC 58.786 38.462 2.88 0.00 37.10 2.59
6 7 7.130681 AGCTCCAACAGATTATAAAGCTACT 57.869 36.000 2.88 0.00 37.10 2.57
7 8 7.713073 AGAAGCTCCAACAGATTATAAAGCTAC 59.287 37.037 4.84 0.00 37.85 3.58
8 9 7.796054 AGAAGCTCCAACAGATTATAAAGCTA 58.204 34.615 4.84 0.00 37.85 3.32
9 10 6.657875 AGAAGCTCCAACAGATTATAAAGCT 58.342 36.000 0.00 0.00 40.37 3.74
10 11 6.765512 AGAGAAGCTCCAACAGATTATAAAGC 59.234 38.462 0.00 0.00 27.92 3.51
11 12 8.729805 AAGAGAAGCTCCAACAGATTATAAAG 57.270 34.615 0.00 0.00 27.92 1.85
12 13 8.950210 CAAAGAGAAGCTCCAACAGATTATAAA 58.050 33.333 0.00 0.00 27.92 1.40
13 14 8.103305 ACAAAGAGAAGCTCCAACAGATTATAA 58.897 33.333 0.00 0.00 27.92 0.98
14 15 7.624549 ACAAAGAGAAGCTCCAACAGATTATA 58.375 34.615 0.00 0.00 27.92 0.98
15 16 6.479884 ACAAAGAGAAGCTCCAACAGATTAT 58.520 36.000 0.00 0.00 27.92 1.28
16 17 5.869579 ACAAAGAGAAGCTCCAACAGATTA 58.130 37.500 0.00 0.00 27.92 1.75
17 18 4.723309 ACAAAGAGAAGCTCCAACAGATT 58.277 39.130 0.00 0.00 31.60 2.40
18 19 4.363991 ACAAAGAGAAGCTCCAACAGAT 57.636 40.909 0.00 0.00 0.00 2.90
19 20 3.845781 ACAAAGAGAAGCTCCAACAGA 57.154 42.857 0.00 0.00 0.00 3.41
20 21 4.907879 AAACAAAGAGAAGCTCCAACAG 57.092 40.909 0.00 0.00 0.00 3.16
21 22 4.275936 GCTAAACAAAGAGAAGCTCCAACA 59.724 41.667 0.00 0.00 0.00 3.33
22 23 4.320567 GGCTAAACAAAGAGAAGCTCCAAC 60.321 45.833 0.00 0.00 33.67 3.77
23 24 3.821033 GGCTAAACAAAGAGAAGCTCCAA 59.179 43.478 0.00 0.00 33.67 3.53
24 25 3.073062 AGGCTAAACAAAGAGAAGCTCCA 59.927 43.478 0.00 0.00 33.67 3.86
25 26 3.680490 AGGCTAAACAAAGAGAAGCTCC 58.320 45.455 0.00 0.00 33.67 4.70
26 27 4.517075 ACAAGGCTAAACAAAGAGAAGCTC 59.483 41.667 0.00 0.00 33.67 4.09
27 28 4.464947 ACAAGGCTAAACAAAGAGAAGCT 58.535 39.130 0.00 0.00 33.67 3.74
28 29 4.837896 ACAAGGCTAAACAAAGAGAAGC 57.162 40.909 0.00 0.00 0.00 3.86
29 30 7.875971 ACAATACAAGGCTAAACAAAGAGAAG 58.124 34.615 0.00 0.00 0.00 2.85
30 31 7.817418 ACAATACAAGGCTAAACAAAGAGAA 57.183 32.000 0.00 0.00 0.00 2.87
31 32 8.372459 TCTACAATACAAGGCTAAACAAAGAGA 58.628 33.333 0.00 0.00 0.00 3.10
32 33 8.547967 TCTACAATACAAGGCTAAACAAAGAG 57.452 34.615 0.00 0.00 0.00 2.85
33 34 7.119262 GCTCTACAATACAAGGCTAAACAAAGA 59.881 37.037 0.00 0.00 0.00 2.52
34 35 7.244192 GCTCTACAATACAAGGCTAAACAAAG 58.756 38.462 0.00 0.00 0.00 2.77
35 36 6.150474 GGCTCTACAATACAAGGCTAAACAAA 59.850 38.462 0.00 0.00 0.00 2.83
36 37 5.646360 GGCTCTACAATACAAGGCTAAACAA 59.354 40.000 0.00 0.00 0.00 2.83
37 38 5.183228 GGCTCTACAATACAAGGCTAAACA 58.817 41.667 0.00 0.00 0.00 2.83
38 39 4.575236 GGGCTCTACAATACAAGGCTAAAC 59.425 45.833 0.00 0.00 34.91 2.01
39 40 4.226394 TGGGCTCTACAATACAAGGCTAAA 59.774 41.667 0.00 0.00 34.91 1.85
40 41 3.778075 TGGGCTCTACAATACAAGGCTAA 59.222 43.478 0.00 0.00 34.91 3.09
41 42 3.380393 TGGGCTCTACAATACAAGGCTA 58.620 45.455 0.00 0.00 34.91 3.93
42 43 2.171448 CTGGGCTCTACAATACAAGGCT 59.829 50.000 0.00 0.00 34.91 4.58
43 44 2.565841 CTGGGCTCTACAATACAAGGC 58.434 52.381 0.00 0.00 0.00 4.35
44 45 2.171448 AGCTGGGCTCTACAATACAAGG 59.829 50.000 0.00 0.00 30.62 3.61
45 46 3.550437 AGCTGGGCTCTACAATACAAG 57.450 47.619 0.00 0.00 30.62 3.16
46 47 4.301072 AAAGCTGGGCTCTACAATACAA 57.699 40.909 0.00 0.00 38.25 2.41
47 48 5.368145 CATAAAGCTGGGCTCTACAATACA 58.632 41.667 0.00 0.00 38.25 2.29
48 49 4.214332 GCATAAAGCTGGGCTCTACAATAC 59.786 45.833 0.00 0.00 38.25 1.89
49 50 4.389374 GCATAAAGCTGGGCTCTACAATA 58.611 43.478 0.00 0.00 38.25 1.90
50 51 3.217626 GCATAAAGCTGGGCTCTACAAT 58.782 45.455 0.00 0.00 38.25 2.71
51 52 2.643551 GCATAAAGCTGGGCTCTACAA 58.356 47.619 0.00 0.00 38.25 2.41
52 53 1.473257 CGCATAAAGCTGGGCTCTACA 60.473 52.381 0.00 0.00 38.25 2.74
53 54 1.221414 CGCATAAAGCTGGGCTCTAC 58.779 55.000 0.00 0.00 38.25 2.59
54 55 0.106708 CCGCATAAAGCTGGGCTCTA 59.893 55.000 0.00 0.00 38.25 2.43
55 56 1.153086 CCGCATAAAGCTGGGCTCT 60.153 57.895 0.00 0.00 38.25 4.09
56 57 2.838974 GCCGCATAAAGCTGGGCTC 61.839 63.158 0.00 0.00 43.80 4.70
57 58 2.830370 GCCGCATAAAGCTGGGCT 60.830 61.111 0.00 0.00 43.80 5.19
58 59 1.101049 TAAGCCGCATAAAGCTGGGC 61.101 55.000 0.00 0.00 46.46 5.36
59 60 1.334869 CTTAAGCCGCATAAAGCTGGG 59.665 52.381 0.00 0.00 39.87 4.45
60 61 2.288666 TCTTAAGCCGCATAAAGCTGG 58.711 47.619 0.00 0.00 39.87 4.85
61 62 4.094887 TCTTTCTTAAGCCGCATAAAGCTG 59.905 41.667 0.00 0.00 39.87 4.24
62 63 4.095036 GTCTTTCTTAAGCCGCATAAAGCT 59.905 41.667 0.00 0.00 42.61 3.74
63 64 4.095036 AGTCTTTCTTAAGCCGCATAAAGC 59.905 41.667 0.00 0.00 40.87 3.51
64 65 5.803020 AGTCTTTCTTAAGCCGCATAAAG 57.197 39.130 0.00 1.94 0.00 1.85
65 66 6.183360 GCTTAGTCTTTCTTAAGCCGCATAAA 60.183 38.462 0.00 0.00 39.03 1.40
66 67 5.293569 GCTTAGTCTTTCTTAAGCCGCATAA 59.706 40.000 0.00 0.00 39.03 1.90
67 68 4.809426 GCTTAGTCTTTCTTAAGCCGCATA 59.191 41.667 0.00 0.00 39.03 3.14
68 69 3.623510 GCTTAGTCTTTCTTAAGCCGCAT 59.376 43.478 0.00 0.00 39.03 4.73
69 70 3.000727 GCTTAGTCTTTCTTAAGCCGCA 58.999 45.455 0.00 0.00 39.03 5.69
70 71 3.000727 TGCTTAGTCTTTCTTAAGCCGC 58.999 45.455 12.18 0.00 42.91 6.53
71 72 3.371285 GGTGCTTAGTCTTTCTTAAGCCG 59.629 47.826 12.18 0.00 42.91 5.52
72 73 3.690139 GGGTGCTTAGTCTTTCTTAAGCC 59.310 47.826 12.18 5.43 42.91 4.35
73 74 4.324267 TGGGTGCTTAGTCTTTCTTAAGC 58.676 43.478 8.80 8.80 43.60 3.09
74 75 5.639931 GTCTGGGTGCTTAGTCTTTCTTAAG 59.360 44.000 0.00 0.00 0.00 1.85
75 76 5.548406 GTCTGGGTGCTTAGTCTTTCTTAA 58.452 41.667 0.00 0.00 0.00 1.85
76 77 4.321750 CGTCTGGGTGCTTAGTCTTTCTTA 60.322 45.833 0.00 0.00 0.00 2.10
77 78 3.555168 CGTCTGGGTGCTTAGTCTTTCTT 60.555 47.826 0.00 0.00 0.00 2.52
78 79 2.028930 CGTCTGGGTGCTTAGTCTTTCT 60.029 50.000 0.00 0.00 0.00 2.52
79 80 2.288886 ACGTCTGGGTGCTTAGTCTTTC 60.289 50.000 0.00 0.00 0.00 2.62
80 81 1.692519 ACGTCTGGGTGCTTAGTCTTT 59.307 47.619 0.00 0.00 0.00 2.52
81 82 1.000955 CACGTCTGGGTGCTTAGTCTT 59.999 52.381 0.00 0.00 0.00 3.01
82 83 0.603569 CACGTCTGGGTGCTTAGTCT 59.396 55.000 0.00 0.00 0.00 3.24
83 84 0.601558 TCACGTCTGGGTGCTTAGTC 59.398 55.000 0.00 0.00 37.83 2.59
84 85 0.603569 CTCACGTCTGGGTGCTTAGT 59.396 55.000 0.00 0.00 37.83 2.24
85 86 0.108615 CCTCACGTCTGGGTGCTTAG 60.109 60.000 0.00 0.00 37.83 2.18
86 87 1.972198 CCTCACGTCTGGGTGCTTA 59.028 57.895 0.00 0.00 37.83 3.09
87 88 2.743718 CCTCACGTCTGGGTGCTT 59.256 61.111 0.00 0.00 37.83 3.91
88 89 4.008933 GCCTCACGTCTGGGTGCT 62.009 66.667 5.62 0.00 37.83 4.40
90 91 4.742201 CGGCCTCACGTCTGGGTG 62.742 72.222 0.00 0.00 39.29 4.61
94 95 1.672854 TTATCCCGGCCTCACGTCTG 61.673 60.000 0.00 0.00 0.00 3.51
95 96 1.380785 TTATCCCGGCCTCACGTCT 60.381 57.895 0.00 0.00 0.00 4.18
96 97 1.227176 GTTATCCCGGCCTCACGTC 60.227 63.158 0.00 0.00 0.00 4.34
97 98 2.897972 GTTATCCCGGCCTCACGT 59.102 61.111 0.00 0.00 0.00 4.49
98 99 2.279252 CGTTATCCCGGCCTCACG 60.279 66.667 0.00 0.00 0.00 4.35
99 100 2.108362 CCGTTATCCCGGCCTCAC 59.892 66.667 0.00 0.00 41.78 3.51
106 107 1.288127 GGATCCGTCCGTTATCCCG 59.712 63.158 0.00 0.00 34.30 5.14
115 116 2.919228 ACAAATGCTTAGGATCCGTCC 58.081 47.619 5.98 0.00 45.45 4.79
116 117 3.065371 CCAACAAATGCTTAGGATCCGTC 59.935 47.826 5.98 0.00 0.00 4.79
117 118 3.016736 CCAACAAATGCTTAGGATCCGT 58.983 45.455 5.98 0.00 0.00 4.69
118 119 2.223572 GCCAACAAATGCTTAGGATCCG 60.224 50.000 5.98 0.00 0.00 4.18
119 120 2.760092 TGCCAACAAATGCTTAGGATCC 59.240 45.455 2.48 2.48 0.00 3.36
120 121 4.454728 TTGCCAACAAATGCTTAGGATC 57.545 40.909 0.00 0.00 31.21 3.36
121 122 4.568956 GTTTGCCAACAAATGCTTAGGAT 58.431 39.130 0.00 0.00 46.93 3.24
122 123 3.551863 CGTTTGCCAACAAATGCTTAGGA 60.552 43.478 1.21 0.00 46.93 2.94
123 124 2.730928 CGTTTGCCAACAAATGCTTAGG 59.269 45.455 1.21 0.00 46.93 2.69
124 125 2.730928 CCGTTTGCCAACAAATGCTTAG 59.269 45.455 1.21 0.00 46.87 2.18
125 126 2.546795 CCCGTTTGCCAACAAATGCTTA 60.547 45.455 1.21 0.00 46.87 3.09
126 127 1.580815 CCGTTTGCCAACAAATGCTT 58.419 45.000 1.21 0.00 46.87 3.91
127 128 0.249826 CCCGTTTGCCAACAAATGCT 60.250 50.000 1.21 0.00 46.87 3.79
128 129 1.840630 GCCCGTTTGCCAACAAATGC 61.841 55.000 1.21 1.46 46.87 3.56
129 130 1.555741 CGCCCGTTTGCCAACAAATG 61.556 55.000 1.21 4.18 46.93 2.32
130 131 1.300542 CGCCCGTTTGCCAACAAAT 60.301 52.632 1.21 0.00 46.93 2.32
131 132 2.105128 CGCCCGTTTGCCAACAAA 59.895 55.556 1.21 0.00 43.45 2.83
132 133 4.577246 GCGCCCGTTTGCCAACAA 62.577 61.111 0.00 0.00 32.54 2.83
146 147 3.386867 CTTCTTCATGGCACGGCGC 62.387 63.158 6.90 0.00 41.28 6.53
147 148 1.970917 GACTTCTTCATGGCACGGCG 61.971 60.000 4.80 4.80 0.00 6.46
148 149 1.796796 GACTTCTTCATGGCACGGC 59.203 57.895 0.00 0.00 0.00 5.68
156 157 3.026630 TCGCAAGTTCGACTTCTTCAT 57.973 42.857 0.00 0.00 36.03 2.57
171 172 1.595993 CTTCGGAGAGGAGGTCGCAA 61.596 60.000 0.00 0.00 38.43 4.85
174 175 0.966370 AACCTTCGGAGAGGAGGTCG 60.966 60.000 11.54 0.00 38.43 4.79
293 294 7.254556 GGCAAGGAAAAAGAAGAAAACAATGAG 60.255 37.037 0.00 0.00 0.00 2.90
295 296 6.509997 CGGCAAGGAAAAAGAAGAAAACAATG 60.510 38.462 0.00 0.00 0.00 2.82
296 297 5.523552 CGGCAAGGAAAAAGAAGAAAACAAT 59.476 36.000 0.00 0.00 0.00 2.71
371 392 9.692325 TCAAAAATAATTAATGGATTTTGGGGG 57.308 29.630 20.87 12.78 37.97 5.40
821 968 0.940991 ACGAAAACGGTCGGTACTGC 60.941 55.000 9.69 0.00 45.40 4.40
827 974 0.041047 GGGAAAACGAAAACGGTCGG 60.041 55.000 9.69 0.00 45.40 4.79
829 976 0.936600 TCGGGAAAACGAAAACGGTC 59.063 50.000 0.00 0.00 40.34 4.79
851 1137 1.789464 GAATTCGATCGCTACTGCTGG 59.211 52.381 11.09 0.00 36.97 4.85
977 2918 2.517798 GGGTTATCCCGGGAGCTCC 61.518 68.421 30.42 25.59 44.74 4.70
1004 2946 1.595003 CGAGTGTAGCGAATCGAGTCC 60.595 57.143 6.91 0.22 37.35 3.85
1141 3083 4.761058 AGGAAGCGGAGGGAGCGA 62.761 66.667 0.00 0.00 40.04 4.93
1260 3785 2.273370 CAACAGTGCAGATTGGATGC 57.727 50.000 0.00 0.00 44.11 3.91
1279 3804 1.857602 GCATCGCGAATTTTCTCTGGC 60.858 52.381 15.24 0.47 0.00 4.85
1490 4015 5.448632 GGAACGTCCATGGCAAAACTAATAG 60.449 44.000 6.96 0.00 36.28 1.73
1491 4016 4.396790 GGAACGTCCATGGCAAAACTAATA 59.603 41.667 6.96 0.00 36.28 0.98
1492 4017 3.192633 GGAACGTCCATGGCAAAACTAAT 59.807 43.478 6.96 0.00 36.28 1.73
1562 4097 1.045407 CATGCATAGCCTTTGCCCAT 58.955 50.000 0.00 0.00 39.39 4.00
1730 4265 8.865978 CAGTTTGGTCATCAATCAATTACATTG 58.134 33.333 3.77 3.77 41.57 2.82
1917 4453 9.907576 GTCAGACATTCTTATATCAAAGTTTCG 57.092 33.333 0.00 0.00 0.00 3.46
1920 4456 9.388506 CCAGTCAGACATTCTTATATCAAAGTT 57.611 33.333 2.66 0.00 0.00 2.66
1997 4533 5.118286 GGGATGCAAATTACTCCCAAAATG 58.882 41.667 14.73 0.00 45.66 2.32
2080 4616 7.944554 CCATGGATCCCAAAATAATACTGTACT 59.055 37.037 5.56 0.00 36.95 2.73
2081 4617 7.724061 ACCATGGATCCCAAAATAATACTGTAC 59.276 37.037 21.47 0.00 36.95 2.90
2082 4618 7.821566 ACCATGGATCCCAAAATAATACTGTA 58.178 34.615 21.47 0.00 36.95 2.74
2083 4619 6.682537 ACCATGGATCCCAAAATAATACTGT 58.317 36.000 21.47 0.00 36.95 3.55
2084 4620 6.209391 GGACCATGGATCCCAAAATAATACTG 59.791 42.308 21.47 0.00 36.95 2.74
2122 4658 2.040544 GTGGCCCCTTGTCATCACG 61.041 63.158 0.00 0.00 0.00 4.35
2140 4676 8.294577 TGATTCAAAATTTCAGATGACAGTGAG 58.705 33.333 0.00 0.00 0.00 3.51
2233 4769 4.096081 AGACCAACTAGCGTCACTACATAC 59.904 45.833 7.67 0.00 0.00 2.39
2234 4770 4.267536 AGACCAACTAGCGTCACTACATA 58.732 43.478 7.67 0.00 0.00 2.29
2235 4771 3.090037 AGACCAACTAGCGTCACTACAT 58.910 45.455 7.67 0.00 0.00 2.29
2249 4785 3.116079 TCCCGTTGACTTAAGACCAAC 57.884 47.619 23.13 23.13 37.42 3.77
2256 4792 6.072175 CCAAGAAATGATTCCCGTTGACTTAA 60.072 38.462 0.00 0.00 36.12 1.85
2381 4919 2.997315 CTCTCGGGTCCCAGCACA 60.997 66.667 9.12 0.00 0.00 4.57
2389 4927 2.543067 AAATGGCCAGCTCTCGGGTC 62.543 60.000 13.05 0.00 32.50 4.46
2414 4952 8.034058 ACGTTCTGAATTTTCTAAGAATGAGG 57.966 34.615 14.62 3.18 37.71 3.86
2538 5076 4.582869 TCAAGCATTCACATAGTTGAGCT 58.417 39.130 0.00 0.00 0.00 4.09
2544 5082 2.648059 GCCCTCAAGCATTCACATAGT 58.352 47.619 0.00 0.00 0.00 2.12
2555 5093 1.038130 TAGAGACGAGGCCCTCAAGC 61.038 60.000 12.13 0.00 32.07 4.01
2563 5101 7.600375 TCATCATTCATATTTTAGAGACGAGGC 59.400 37.037 0.00 0.00 0.00 4.70
2566 5104 9.987272 ATGTCATCATTCATATTTTAGAGACGA 57.013 29.630 0.00 0.00 0.00 4.20
2586 5124 7.977853 GTGCTTAATTTTCCTTCATCATGTCAT 59.022 33.333 0.00 0.00 0.00 3.06
2638 5176 0.541863 CCGTTGGAGATGCCCTAAGT 59.458 55.000 0.00 0.00 34.97 2.24
2639 5177 0.815615 GCCGTTGGAGATGCCCTAAG 60.816 60.000 0.00 0.00 34.97 2.18
2652 5202 2.321263 GAAATTTACGGGTTGCCGTTG 58.679 47.619 0.00 0.00 44.38 4.10
2669 5219 4.794648 CATGGCCGCGGGAGGAAA 62.795 66.667 29.38 0.00 0.00 3.13
2689 5239 2.103263 GCCCTAAGTAGACCAGTCCATG 59.897 54.545 0.00 0.00 0.00 3.66
2715 5265 1.739338 AATTTGCGGGTTGCCGTTGA 61.739 50.000 0.00 0.00 45.60 3.18
2728 5278 0.103026 GGATGCGGGAGGAAATTTGC 59.897 55.000 0.68 0.68 0.00 3.68
2753 5303 0.616679 CGGACTAGTCCCCCTTTCCA 60.617 60.000 31.78 0.00 46.96 3.53
2754 5304 1.969200 GCGGACTAGTCCCCCTTTCC 61.969 65.000 31.78 9.40 46.96 3.13
2759 5309 4.828296 TCCGCGGACTAGTCCCCC 62.828 72.222 31.78 22.51 46.96 5.40
2772 5322 3.480225 CTCCCGTATCCGTGTCCGC 62.480 68.421 0.00 0.00 0.00 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.