Multiple sequence alignment - TraesCS3B01G249300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G249300 chr3B 100.000 4415 0 0 1 4415 397409396 397413810 0.000000e+00 8154
1 TraesCS3B01G249300 chr3D 97.689 3029 58 5 899 3919 322068286 322071310 0.000000e+00 5195
2 TraesCS3B01G249300 chr3D 89.286 308 13 2 3916 4223 322071411 322071698 6.980000e-98 368
3 TraesCS3B01G249300 chr3D 96.335 191 6 1 4225 4415 210410148 210410337 3.320000e-81 313
4 TraesCS3B01G249300 chr3A 96.855 3116 74 8 881 3982 401565678 401562573 0.000000e+00 5190
5 TraesCS3B01G249300 chr3A 89.139 267 9 4 3965 4231 401562546 401562300 9.220000e-82 315
6 TraesCS3B01G249300 chr7D 91.946 745 55 5 1 741 560988777 560989520 0.000000e+00 1038
7 TraesCS3B01G249300 chr4B 89.386 782 68 10 1 770 608054713 608053935 0.000000e+00 970
8 TraesCS3B01G249300 chr4B 89.337 769 73 7 6 770 86638737 86637974 0.000000e+00 957
9 TraesCS3B01G249300 chr4B 86.873 777 85 15 1 770 553346887 553346121 0.000000e+00 854
10 TraesCS3B01G249300 chr6B 87.007 862 94 14 1 849 125347987 125347131 0.000000e+00 955
11 TraesCS3B01G249300 chr6B 88.204 763 80 7 1 754 708001281 708002042 0.000000e+00 902
12 TraesCS3B01G249300 chrUn 89.133 773 75 5 2 771 7161286 7162052 0.000000e+00 953
13 TraesCS3B01G249300 chrUn 88.492 756 78 6 24 770 31794341 31793586 0.000000e+00 905
14 TraesCS3B01G249300 chr4A 86.445 782 89 11 1 770 698357441 698358217 0.000000e+00 841
15 TraesCS3B01G249300 chr7B 98.446 193 2 1 4223 4415 287964660 287964851 5.470000e-89 339
16 TraesCS3B01G249300 chr7B 95.337 193 8 1 4223 4415 478909872 478909681 5.550000e-79 305
17 TraesCS3B01G249300 chr7B 94.388 196 9 1 4220 4415 435675629 435675822 2.580000e-77 300
18 TraesCS3B01G249300 chr5B 97.938 194 4 0 4222 4415 610506723 610506916 1.970000e-88 337
19 TraesCS3B01G249300 chr6A 94.500 200 11 0 4216 4415 452268140 452267941 4.290000e-80 309
20 TraesCS3B01G249300 chr5A 94.949 198 9 1 4218 4415 374886167 374885971 4.290000e-80 309
21 TraesCS3B01G249300 chr1A 95.385 195 8 1 4221 4415 545755484 545755291 4.290000e-80 309
22 TraesCS3B01G249300 chr2A 95.812 191 7 1 4225 4415 15461108 15461297 1.540000e-79 307


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G249300 chr3B 397409396 397413810 4414 False 8154.0 8154 100.0000 1 4415 1 chr3B.!!$F1 4414
1 TraesCS3B01G249300 chr3D 322068286 322071698 3412 False 2781.5 5195 93.4875 899 4223 2 chr3D.!!$F2 3324
2 TraesCS3B01G249300 chr3A 401562300 401565678 3378 True 2752.5 5190 92.9970 881 4231 2 chr3A.!!$R1 3350
3 TraesCS3B01G249300 chr7D 560988777 560989520 743 False 1038.0 1038 91.9460 1 741 1 chr7D.!!$F1 740
4 TraesCS3B01G249300 chr4B 608053935 608054713 778 True 970.0 970 89.3860 1 770 1 chr4B.!!$R3 769
5 TraesCS3B01G249300 chr4B 86637974 86638737 763 True 957.0 957 89.3370 6 770 1 chr4B.!!$R1 764
6 TraesCS3B01G249300 chr4B 553346121 553346887 766 True 854.0 854 86.8730 1 770 1 chr4B.!!$R2 769
7 TraesCS3B01G249300 chr6B 125347131 125347987 856 True 955.0 955 87.0070 1 849 1 chr6B.!!$R1 848
8 TraesCS3B01G249300 chr6B 708001281 708002042 761 False 902.0 902 88.2040 1 754 1 chr6B.!!$F1 753
9 TraesCS3B01G249300 chrUn 7161286 7162052 766 False 953.0 953 89.1330 2 771 1 chrUn.!!$F1 769
10 TraesCS3B01G249300 chrUn 31793586 31794341 755 True 905.0 905 88.4920 24 770 1 chrUn.!!$R1 746
11 TraesCS3B01G249300 chr4A 698357441 698358217 776 False 841.0 841 86.4450 1 770 1 chr4A.!!$F1 769

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
872 908 0.809385 CGGTTGGAGACGCTCTTAGA 59.191 55.0 6.78 0.0 0.00 2.10 F
943 979 0.949105 CAGTTCTCGGGGGTCAAACG 60.949 60.0 0.00 0.0 0.00 3.60 F
2233 2269 1.449726 CTGCCAGCAACACAAGCTCA 61.450 55.0 0.00 0.0 41.14 4.26 F
3280 3316 0.541863 AAGCCTCCGTGATGGTAAGG 59.458 55.0 0.00 0.0 39.52 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1851 1887 0.526096 CATCCATTTTCTTGCCGGCG 60.526 55.0 23.90 8.74 0.00 6.46 R
2582 2618 1.235724 GGTCGGGACAAAACCTTCAG 58.764 55.0 0.75 0.00 0.00 3.02 R
3345 3381 1.312815 GGCCAGCCAATATGTCAGAC 58.687 55.0 3.12 0.00 35.81 3.51 R
4302 4500 0.034186 TGGTAGCTTGCATTGGGGAG 60.034 55.0 0.00 0.00 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 77 2.589442 GGCGTCGTGTTGGTGGAA 60.589 61.111 0.00 0.00 0.00 3.53
80 82 1.098712 GTCGTGTTGGTGGAAGCCAA 61.099 55.000 0.00 0.00 45.37 4.52
151 156 2.038329 CGGTGTACTGGGGGAGGA 59.962 66.667 0.00 0.00 0.00 3.71
210 217 1.153549 CTCAGCGGTGAAGTAGGCC 60.154 63.158 19.16 0.00 30.14 5.19
318 325 4.467084 GCCCGGATGTTCGCCTCA 62.467 66.667 0.73 0.00 0.00 3.86
618 642 1.188863 GGAATCAATGGCAAGGCTGT 58.811 50.000 0.00 0.00 0.00 4.40
796 831 1.135689 CCGATGAAAAACGGGCTTCTG 60.136 52.381 0.00 0.00 44.59 3.02
797 832 1.535462 CGATGAAAAACGGGCTTCTGT 59.465 47.619 0.00 0.00 0.00 3.41
798 833 2.739913 CGATGAAAAACGGGCTTCTGTA 59.260 45.455 0.00 0.00 0.00 2.74
800 835 3.478857 TGAAAAACGGGCTTCTGTAGA 57.521 42.857 0.00 0.00 0.00 2.59
801 836 4.015872 TGAAAAACGGGCTTCTGTAGAT 57.984 40.909 0.00 0.00 0.00 1.98
802 837 3.751175 TGAAAAACGGGCTTCTGTAGATG 59.249 43.478 0.00 0.00 0.00 2.90
803 838 3.418684 AAAACGGGCTTCTGTAGATGT 57.581 42.857 0.00 0.00 0.00 3.06
804 839 4.546829 AAAACGGGCTTCTGTAGATGTA 57.453 40.909 0.00 0.00 0.00 2.29
860 896 4.735132 CGAAGGAGCGCGGTTGGA 62.735 66.667 14.00 0.00 0.00 3.53
861 897 2.815647 GAAGGAGCGCGGTTGGAG 60.816 66.667 14.00 0.00 0.00 3.86
862 898 3.296709 GAAGGAGCGCGGTTGGAGA 62.297 63.158 14.00 0.00 0.00 3.71
863 899 3.591254 AAGGAGCGCGGTTGGAGAC 62.591 63.158 14.00 0.00 0.00 3.36
871 907 3.330766 CGGTTGGAGACGCTCTTAG 57.669 57.895 6.78 0.00 0.00 2.18
872 908 0.809385 CGGTTGGAGACGCTCTTAGA 59.191 55.000 6.78 0.00 0.00 2.10
873 909 1.201647 CGGTTGGAGACGCTCTTAGAA 59.798 52.381 6.78 0.00 0.00 2.10
874 910 2.608268 GGTTGGAGACGCTCTTAGAAC 58.392 52.381 6.78 5.50 0.00 3.01
875 911 2.608268 GTTGGAGACGCTCTTAGAACC 58.392 52.381 6.78 0.00 0.00 3.62
876 912 1.919240 TGGAGACGCTCTTAGAACCA 58.081 50.000 6.78 0.00 0.00 3.67
877 913 2.244695 TGGAGACGCTCTTAGAACCAA 58.755 47.619 6.78 0.00 0.00 3.67
878 914 2.832129 TGGAGACGCTCTTAGAACCAAT 59.168 45.455 6.78 0.00 0.00 3.16
879 915 4.021229 TGGAGACGCTCTTAGAACCAATA 58.979 43.478 6.78 0.00 0.00 1.90
884 920 3.126831 CGCTCTTAGAACCAATAGGCTG 58.873 50.000 0.00 0.00 39.06 4.85
889 925 5.978814 TCTTAGAACCAATAGGCTGAGAAC 58.021 41.667 0.00 0.00 39.06 3.01
895 931 3.209410 CCAATAGGCTGAGAACACCATC 58.791 50.000 0.00 0.00 0.00 3.51
941 977 1.072505 GCAGTTCTCGGGGGTCAAA 59.927 57.895 0.00 0.00 0.00 2.69
942 978 1.235281 GCAGTTCTCGGGGGTCAAAC 61.235 60.000 0.00 0.00 0.00 2.93
943 979 0.949105 CAGTTCTCGGGGGTCAAACG 60.949 60.000 0.00 0.00 0.00 3.60
950 986 2.686816 GGGGGTCAAACGTCGCATG 61.687 63.158 0.00 0.00 0.00 4.06
1143 1179 2.359975 CACTTCTCCAACCGCCCC 60.360 66.667 0.00 0.00 0.00 5.80
1920 1956 3.708426 TATTGCTTGCGAGGCGAGGTT 62.708 52.381 2.37 0.00 40.20 3.50
1991 2027 4.703897 CCAACTAATGTGACGTATGGGAT 58.296 43.478 0.00 0.00 0.00 3.85
2008 2044 4.231273 TGGGATGCTTATAAGAGGCTGTA 58.769 43.478 16.85 0.00 0.00 2.74
2103 2139 4.509970 TCACACGAGTTCAGTTTGGTTATG 59.490 41.667 0.00 0.00 0.00 1.90
2118 2154 2.514803 GTTATGAAGGGCCTGTTGTGT 58.485 47.619 6.92 0.00 0.00 3.72
2233 2269 1.449726 CTGCCAGCAACACAAGCTCA 61.450 55.000 0.00 0.00 41.14 4.26
2610 2646 0.601576 TTGTCCCGACCACAATGACG 60.602 55.000 0.00 0.00 0.00 4.35
2920 2956 3.846588 AGATGGTCTAACACCCACATCTT 59.153 43.478 0.00 0.00 46.18 2.40
3123 3159 1.080638 TGGCCAAGGGTAACATTCCT 58.919 50.000 0.61 0.00 39.57 3.36
3143 3179 6.550938 TCCTGATGATATCACTTTCACAGT 57.449 37.500 7.78 0.00 35.06 3.55
3280 3316 0.541863 AAGCCTCCGTGATGGTAAGG 59.458 55.000 0.00 0.00 39.52 2.69
3345 3381 5.810525 GGAATTGTTCCTGATGATACAACG 58.189 41.667 1.52 0.00 46.57 4.10
3491 3534 9.757227 CAACATTGGGAAACTGTTAAATAAAGA 57.243 29.630 0.00 0.00 32.14 2.52
3516 3559 2.290960 ACCTTAACAGGCCAGATGGAAC 60.291 50.000 5.01 0.00 45.56 3.62
3522 3565 0.482446 AGGCCAGATGGAACCAAACA 59.518 50.000 5.01 0.00 37.39 2.83
3615 3658 9.508567 GCTTTTCATTAAAGTATAAGAGCTTGG 57.491 33.333 0.00 0.00 44.21 3.61
3735 3778 3.068560 TGCATTTTTCCTGATGCTTTGC 58.931 40.909 9.39 0.00 46.68 3.68
3867 3917 5.788531 CGATGAACTGGACGTTTCAATTTAC 59.211 40.000 4.62 0.00 35.56 2.01
3904 3954 7.911130 TGTTCCTCATCTCTTCTGATCTTAT 57.089 36.000 0.00 0.00 0.00 1.73
3941 4095 3.055602 TGTGAGATGAGGTGAATGTCAGG 60.056 47.826 0.00 0.00 28.88 3.86
3973 4127 4.166246 TCGGGTTCTTCTCATAGAGCTA 57.834 45.455 0.00 0.00 0.00 3.32
3989 4187 8.127327 TCATAGAGCTATGTGTTTCGTAGTAAC 58.873 37.037 15.08 0.00 42.57 2.50
4060 4258 6.702716 TTTTGAAATAAGAGAACAACGGGT 57.297 33.333 0.00 0.00 0.00 5.28
4061 4259 5.682943 TTGAAATAAGAGAACAACGGGTG 57.317 39.130 0.00 0.00 0.00 4.61
4062 4260 3.500680 TGAAATAAGAGAACAACGGGTGC 59.499 43.478 0.00 0.00 0.00 5.01
4063 4261 3.418684 AATAAGAGAACAACGGGTGCT 57.581 42.857 0.00 0.00 38.46 4.40
4064 4262 2.163818 TAAGAGAACAACGGGTGCTG 57.836 50.000 0.00 0.00 34.62 4.41
4065 4263 0.468226 AAGAGAACAACGGGTGCTGA 59.532 50.000 0.00 0.00 34.62 4.26
4066 4264 0.687354 AGAGAACAACGGGTGCTGAT 59.313 50.000 0.00 0.00 34.62 2.90
4067 4265 1.079503 GAGAACAACGGGTGCTGATC 58.920 55.000 0.00 0.00 34.62 2.92
4068 4266 0.396435 AGAACAACGGGTGCTGATCA 59.604 50.000 0.00 0.00 32.55 2.92
4069 4267 0.517316 GAACAACGGGTGCTGATCAC 59.483 55.000 0.00 0.00 44.90 3.06
4118 4316 0.532573 GGGATGCTGAGACAAGACGA 59.467 55.000 0.00 0.00 0.00 4.20
4122 4320 2.370281 TGCTGAGACAAGACGATTCC 57.630 50.000 0.00 0.00 0.00 3.01
4196 4394 0.107456 GCCTGGATCCGATGACATGT 59.893 55.000 7.39 0.00 0.00 3.21
4227 4425 3.553828 TTATGTTTCCGCCTCTTAGGG 57.446 47.619 0.00 0.00 35.37 3.53
4239 4437 3.480470 CCTCTTAGGGCATGTACAATGG 58.520 50.000 0.00 0.00 0.00 3.16
4240 4438 3.117888 CCTCTTAGGGCATGTACAATGGT 60.118 47.826 0.00 0.00 0.00 3.55
4241 4439 3.879295 CTCTTAGGGCATGTACAATGGTG 59.121 47.826 0.00 0.00 0.00 4.17
4242 4440 2.727123 TAGGGCATGTACAATGGTGG 57.273 50.000 0.00 0.00 0.00 4.61
4243 4441 0.684153 AGGGCATGTACAATGGTGGC 60.684 55.000 11.25 11.25 36.52 5.01
4244 4442 0.969917 GGGCATGTACAATGGTGGCA 60.970 55.000 18.87 0.00 38.72 4.92
4245 4443 1.113788 GGCATGTACAATGGTGGCAT 58.886 50.000 14.01 0.00 37.14 4.40
4246 4444 2.305928 GGCATGTACAATGGTGGCATA 58.694 47.619 14.01 0.00 37.14 3.14
4247 4445 2.892852 GGCATGTACAATGGTGGCATAT 59.107 45.455 14.01 0.00 37.14 1.78
4248 4446 3.305539 GGCATGTACAATGGTGGCATATG 60.306 47.826 14.01 0.00 37.14 1.78
4249 4447 3.305539 GCATGTACAATGGTGGCATATGG 60.306 47.826 0.00 0.00 0.00 2.74
4250 4448 3.941704 TGTACAATGGTGGCATATGGA 57.058 42.857 4.56 0.00 0.00 3.41
4251 4449 4.451891 TGTACAATGGTGGCATATGGAT 57.548 40.909 4.56 0.00 0.00 3.41
4252 4450 5.574970 TGTACAATGGTGGCATATGGATA 57.425 39.130 4.56 0.00 0.00 2.59
4253 4451 5.312895 TGTACAATGGTGGCATATGGATAC 58.687 41.667 4.56 0.00 0.00 2.24
4269 4467 5.565455 TGGATACATATGCCTCATGACAA 57.435 39.130 1.58 0.00 46.17 3.18
4270 4468 5.939447 TGGATACATATGCCTCATGACAAA 58.061 37.500 1.58 0.00 46.17 2.83
4271 4469 6.363882 TGGATACATATGCCTCATGACAAAA 58.636 36.000 1.58 0.00 46.17 2.44
4272 4470 6.832900 TGGATACATATGCCTCATGACAAAAA 59.167 34.615 1.58 0.00 46.17 1.94
4273 4471 7.013559 TGGATACATATGCCTCATGACAAAAAG 59.986 37.037 1.58 0.00 46.17 2.27
4274 4472 7.013655 GGATACATATGCCTCATGACAAAAAGT 59.986 37.037 1.58 0.00 0.00 2.66
4275 4473 8.978874 ATACATATGCCTCATGACAAAAAGTA 57.021 30.769 1.58 0.00 0.00 2.24
4276 4474 7.701539 ACATATGCCTCATGACAAAAAGTAA 57.298 32.000 1.58 0.00 0.00 2.24
4277 4475 8.297470 ACATATGCCTCATGACAAAAAGTAAT 57.703 30.769 1.58 0.00 0.00 1.89
4278 4476 8.752187 ACATATGCCTCATGACAAAAAGTAATT 58.248 29.630 1.58 0.00 0.00 1.40
4279 4477 9.590451 CATATGCCTCATGACAAAAAGTAATTT 57.410 29.630 0.00 0.00 0.00 1.82
4280 4478 7.894376 ATGCCTCATGACAAAAAGTAATTTG 57.106 32.000 0.00 0.00 44.11 2.32
4281 4479 7.048629 TGCCTCATGACAAAAAGTAATTTGA 57.951 32.000 6.76 0.00 41.73 2.69
4282 4480 7.147312 TGCCTCATGACAAAAAGTAATTTGAG 58.853 34.615 6.76 0.00 41.73 3.02
4283 4481 6.587608 GCCTCATGACAAAAAGTAATTTGAGG 59.412 38.462 11.42 11.42 41.73 3.86
4284 4482 7.661040 CCTCATGACAAAAAGTAATTTGAGGT 58.339 34.615 8.66 0.00 41.73 3.85
4285 4483 8.792633 CCTCATGACAAAAAGTAATTTGAGGTA 58.207 33.333 8.66 0.00 41.73 3.08
4286 4484 9.612620 CTCATGACAAAAAGTAATTTGAGGTAC 57.387 33.333 6.76 0.00 41.73 3.34
4287 4485 8.573035 TCATGACAAAAAGTAATTTGAGGTACC 58.427 33.333 2.73 2.73 41.73 3.34
4288 4486 8.576442 CATGACAAAAAGTAATTTGAGGTACCT 58.424 33.333 16.26 16.26 41.73 3.08
4289 4487 9.802039 ATGACAAAAAGTAATTTGAGGTACCTA 57.198 29.630 16.29 0.00 41.73 3.08
4290 4488 9.059260 TGACAAAAAGTAATTTGAGGTACCTAC 57.941 33.333 16.29 8.37 41.73 3.18
4291 4489 8.983702 ACAAAAAGTAATTTGAGGTACCTACA 57.016 30.769 16.29 11.99 41.73 2.74
4292 4490 9.582648 ACAAAAAGTAATTTGAGGTACCTACAT 57.417 29.630 16.29 4.17 41.73 2.29
4316 4514 2.837532 TTTTTCTCCCCAATGCAAGC 57.162 45.000 0.00 0.00 0.00 4.01
4317 4515 2.014010 TTTTCTCCCCAATGCAAGCT 57.986 45.000 0.00 0.00 0.00 3.74
4318 4516 2.897271 TTTCTCCCCAATGCAAGCTA 57.103 45.000 0.00 0.00 0.00 3.32
4319 4517 2.128771 TTCTCCCCAATGCAAGCTAC 57.871 50.000 0.00 0.00 0.00 3.58
4320 4518 0.255890 TCTCCCCAATGCAAGCTACC 59.744 55.000 0.00 0.00 0.00 3.18
4321 4519 0.034186 CTCCCCAATGCAAGCTACCA 60.034 55.000 0.00 0.00 0.00 3.25
4322 4520 0.323360 TCCCCAATGCAAGCTACCAC 60.323 55.000 0.00 0.00 0.00 4.16
4323 4521 0.323725 CCCCAATGCAAGCTACCACT 60.324 55.000 0.00 0.00 0.00 4.00
4324 4522 1.064758 CCCCAATGCAAGCTACCACTA 60.065 52.381 0.00 0.00 0.00 2.74
4325 4523 2.292267 CCCAATGCAAGCTACCACTAG 58.708 52.381 0.00 0.00 0.00 2.57
4326 4524 2.356125 CCCAATGCAAGCTACCACTAGT 60.356 50.000 0.00 0.00 0.00 2.57
4327 4525 2.679837 CCAATGCAAGCTACCACTAGTG 59.320 50.000 16.34 16.34 0.00 2.74
4340 4538 4.974645 CCACTAGTGGGCCTAATTATGA 57.025 45.455 31.15 0.00 46.81 2.15
4341 4539 5.304686 CCACTAGTGGGCCTAATTATGAA 57.695 43.478 31.15 0.00 46.81 2.57
4342 4540 5.690865 CCACTAGTGGGCCTAATTATGAAA 58.309 41.667 31.15 0.00 46.81 2.69
4343 4541 6.306987 CCACTAGTGGGCCTAATTATGAAAT 58.693 40.000 31.15 0.00 46.81 2.17
4344 4542 7.458397 CCACTAGTGGGCCTAATTATGAAATA 58.542 38.462 31.15 0.00 46.81 1.40
4345 4543 7.607991 CCACTAGTGGGCCTAATTATGAAATAG 59.392 40.741 31.15 1.30 46.81 1.73
4346 4544 8.375506 CACTAGTGGGCCTAATTATGAAATAGA 58.624 37.037 15.49 0.00 0.00 1.98
4347 4545 8.945193 ACTAGTGGGCCTAATTATGAAATAGAA 58.055 33.333 4.53 0.00 0.00 2.10
4348 4546 9.793259 CTAGTGGGCCTAATTATGAAATAGAAA 57.207 33.333 4.53 0.00 0.00 2.52
4350 4548 9.487442 AGTGGGCCTAATTATGAAATAGAAAAA 57.513 29.630 4.53 0.00 0.00 1.94
4371 4569 9.974750 GAAAAATAAAGACTCTAGTACACATGC 57.025 33.333 0.00 0.00 0.00 4.06
4372 4570 9.502091 AAAAATAAAGACTCTAGTACACATGCA 57.498 29.630 0.00 0.00 0.00 3.96
4373 4571 9.672673 AAAATAAAGACTCTAGTACACATGCAT 57.327 29.630 0.00 0.00 0.00 3.96
4374 4572 8.879342 AATAAAGACTCTAGTACACATGCATC 57.121 34.615 0.00 0.00 0.00 3.91
4375 4573 6.537453 AAAGACTCTAGTACACATGCATCT 57.463 37.500 0.00 0.00 0.00 2.90
4376 4574 5.766150 AGACTCTAGTACACATGCATCTC 57.234 43.478 0.00 0.00 0.00 2.75
4377 4575 5.445069 AGACTCTAGTACACATGCATCTCT 58.555 41.667 0.00 0.00 0.00 3.10
4378 4576 6.596621 AGACTCTAGTACACATGCATCTCTA 58.403 40.000 0.00 0.00 0.00 2.43
4379 4577 6.485313 AGACTCTAGTACACATGCATCTCTAC 59.515 42.308 0.00 0.00 0.00 2.59
4380 4578 6.361433 ACTCTAGTACACATGCATCTCTACT 58.639 40.000 0.00 4.19 0.00 2.57
4381 4579 6.831353 ACTCTAGTACACATGCATCTCTACTT 59.169 38.462 0.00 0.00 0.00 2.24
4382 4580 7.340743 ACTCTAGTACACATGCATCTCTACTTT 59.659 37.037 0.00 0.00 0.00 2.66
4383 4581 8.067751 TCTAGTACACATGCATCTCTACTTTT 57.932 34.615 0.00 0.00 0.00 2.27
4384 4582 8.191446 TCTAGTACACATGCATCTCTACTTTTC 58.809 37.037 0.00 0.00 0.00 2.29
4385 4583 6.701340 AGTACACATGCATCTCTACTTTTCA 58.299 36.000 0.00 0.00 0.00 2.69
4386 4584 5.869753 ACACATGCATCTCTACTTTTCAC 57.130 39.130 0.00 0.00 0.00 3.18
4387 4585 5.555017 ACACATGCATCTCTACTTTTCACT 58.445 37.500 0.00 0.00 0.00 3.41
4388 4586 5.641209 ACACATGCATCTCTACTTTTCACTC 59.359 40.000 0.00 0.00 0.00 3.51
4389 4587 5.064452 CACATGCATCTCTACTTTTCACTCC 59.936 44.000 0.00 0.00 0.00 3.85
4390 4588 4.890158 TGCATCTCTACTTTTCACTCCA 57.110 40.909 0.00 0.00 0.00 3.86
4391 4589 5.227569 TGCATCTCTACTTTTCACTCCAA 57.772 39.130 0.00 0.00 0.00 3.53
4392 4590 4.997395 TGCATCTCTACTTTTCACTCCAAC 59.003 41.667 0.00 0.00 0.00 3.77
4393 4591 4.393371 GCATCTCTACTTTTCACTCCAACC 59.607 45.833 0.00 0.00 0.00 3.77
4394 4592 5.799213 CATCTCTACTTTTCACTCCAACCT 58.201 41.667 0.00 0.00 0.00 3.50
4395 4593 5.888982 TCTCTACTTTTCACTCCAACCTT 57.111 39.130 0.00 0.00 0.00 3.50
4396 4594 6.248569 TCTCTACTTTTCACTCCAACCTTT 57.751 37.500 0.00 0.00 0.00 3.11
4397 4595 6.659824 TCTCTACTTTTCACTCCAACCTTTT 58.340 36.000 0.00 0.00 0.00 2.27
4398 4596 6.766467 TCTCTACTTTTCACTCCAACCTTTTC 59.234 38.462 0.00 0.00 0.00 2.29
4399 4597 6.419791 TCTACTTTTCACTCCAACCTTTTCA 58.580 36.000 0.00 0.00 0.00 2.69
4400 4598 5.582689 ACTTTTCACTCCAACCTTTTCAG 57.417 39.130 0.00 0.00 0.00 3.02
4401 4599 5.016831 ACTTTTCACTCCAACCTTTTCAGT 58.983 37.500 0.00 0.00 0.00 3.41
4402 4600 5.480422 ACTTTTCACTCCAACCTTTTCAGTT 59.520 36.000 0.00 0.00 0.00 3.16
4403 4601 5.993748 TTTCACTCCAACCTTTTCAGTTT 57.006 34.783 0.00 0.00 0.00 2.66
4404 4602 5.993748 TTCACTCCAACCTTTTCAGTTTT 57.006 34.783 0.00 0.00 0.00 2.43
4405 4603 5.993748 TCACTCCAACCTTTTCAGTTTTT 57.006 34.783 0.00 0.00 0.00 1.94
4406 4604 5.719173 TCACTCCAACCTTTTCAGTTTTTG 58.281 37.500 0.00 0.00 0.00 2.44
4407 4605 5.245075 TCACTCCAACCTTTTCAGTTTTTGT 59.755 36.000 0.00 0.00 0.00 2.83
4408 4606 5.576774 CACTCCAACCTTTTCAGTTTTTGTC 59.423 40.000 0.00 0.00 0.00 3.18
4409 4607 5.245075 ACTCCAACCTTTTCAGTTTTTGTCA 59.755 36.000 0.00 0.00 0.00 3.58
4410 4608 5.474825 TCCAACCTTTTCAGTTTTTGTCAC 58.525 37.500 0.00 0.00 0.00 3.67
4411 4609 5.245075 TCCAACCTTTTCAGTTTTTGTCACT 59.755 36.000 0.00 0.00 0.00 3.41
4412 4610 5.348451 CCAACCTTTTCAGTTTTTGTCACTG 59.652 40.000 0.00 0.00 42.74 3.66
4413 4611 5.072040 ACCTTTTCAGTTTTTGTCACTGG 57.928 39.130 0.40 0.00 41.83 4.00
4414 4612 4.770010 ACCTTTTCAGTTTTTGTCACTGGA 59.230 37.500 0.40 0.00 41.83 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 59 3.387225 TTCCACCAACACGACGCCA 62.387 57.895 0.00 0.00 0.00 5.69
62 64 1.224870 TTGGCTTCCACCAACACGA 59.775 52.632 0.00 0.00 44.80 4.35
75 77 2.600729 CCAGGAGCAGAGGTTGGCT 61.601 63.158 0.00 0.00 44.48 4.75
102 107 3.993584 TCGTGGGCGGCGTACTTT 61.994 61.111 9.37 0.00 38.89 2.66
151 156 4.427661 GACAGAGGAGCAGCGCGT 62.428 66.667 8.43 0.00 0.00 6.01
195 201 3.771160 CCGGCCTACTTCACCGCT 61.771 66.667 0.00 0.00 45.58 5.52
304 311 1.002366 CTCTTTGAGGCGAACATCCG 58.998 55.000 0.00 0.00 0.00 4.18
318 325 1.597461 GGAGGCGTGGCTACTCTTT 59.403 57.895 0.00 0.00 0.00 2.52
592 613 0.617935 TGCCATTGATTCCTCACGGA 59.382 50.000 0.00 0.00 37.60 4.69
780 815 3.478857 TCTACAGAAGCCCGTTTTTCA 57.521 42.857 0.00 0.00 0.00 2.69
789 824 3.798202 CCCAGTTACATCTACAGAAGCC 58.202 50.000 0.00 0.00 0.00 4.35
793 828 2.453521 ACGCCCAGTTACATCTACAGA 58.546 47.619 0.00 0.00 0.00 3.41
819 855 2.864589 TTTTTCGCGCCGTCATCC 59.135 55.556 0.00 0.00 0.00 3.51
843 879 4.735132 TCCAACCGCGCTCCTTCG 62.735 66.667 5.56 0.00 0.00 3.79
853 889 0.809385 TCTAAGAGCGTCTCCAACCG 59.191 55.000 3.66 0.00 0.00 4.44
854 890 2.608268 GTTCTAAGAGCGTCTCCAACC 58.392 52.381 3.66 0.00 0.00 3.77
855 891 2.029290 TGGTTCTAAGAGCGTCTCCAAC 60.029 50.000 3.66 3.08 0.00 3.77
856 892 2.244695 TGGTTCTAAGAGCGTCTCCAA 58.755 47.619 3.66 0.00 0.00 3.53
857 893 1.919240 TGGTTCTAAGAGCGTCTCCA 58.081 50.000 3.66 0.00 0.00 3.86
858 894 3.528597 ATTGGTTCTAAGAGCGTCTCC 57.471 47.619 3.66 0.00 0.00 3.71
859 895 4.612943 CCTATTGGTTCTAAGAGCGTCTC 58.387 47.826 0.00 0.00 0.00 3.36
860 896 3.181474 GCCTATTGGTTCTAAGAGCGTCT 60.181 47.826 0.00 0.00 35.27 4.18
861 897 3.124560 GCCTATTGGTTCTAAGAGCGTC 58.875 50.000 0.00 0.00 35.27 5.19
862 898 2.766828 AGCCTATTGGTTCTAAGAGCGT 59.233 45.455 0.00 0.00 35.27 5.07
863 899 3.126831 CAGCCTATTGGTTCTAAGAGCG 58.873 50.000 0.00 0.00 35.27 5.03
864 900 4.100189 TCTCAGCCTATTGGTTCTAAGAGC 59.900 45.833 0.00 0.00 35.27 4.09
865 901 5.860941 TCTCAGCCTATTGGTTCTAAGAG 57.139 43.478 0.00 0.00 35.27 2.85
866 902 5.483937 TGTTCTCAGCCTATTGGTTCTAAGA 59.516 40.000 0.00 0.00 35.27 2.10
867 903 5.582665 GTGTTCTCAGCCTATTGGTTCTAAG 59.417 44.000 0.00 0.00 35.27 2.18
868 904 5.488341 GTGTTCTCAGCCTATTGGTTCTAA 58.512 41.667 0.00 0.00 35.27 2.10
869 905 4.081087 GGTGTTCTCAGCCTATTGGTTCTA 60.081 45.833 0.00 0.00 36.23 2.10
870 906 3.307762 GGTGTTCTCAGCCTATTGGTTCT 60.308 47.826 0.00 0.00 36.23 3.01
871 907 3.010420 GGTGTTCTCAGCCTATTGGTTC 58.990 50.000 0.00 0.00 36.23 3.62
872 908 2.375174 TGGTGTTCTCAGCCTATTGGTT 59.625 45.455 0.00 0.00 40.84 3.67
873 909 1.985159 TGGTGTTCTCAGCCTATTGGT 59.015 47.619 0.00 0.00 40.84 3.67
874 910 2.787473 TGGTGTTCTCAGCCTATTGG 57.213 50.000 0.00 0.00 40.84 3.16
875 911 2.868583 CGATGGTGTTCTCAGCCTATTG 59.131 50.000 0.00 0.00 40.84 1.90
876 912 2.766263 TCGATGGTGTTCTCAGCCTATT 59.234 45.455 0.00 0.00 40.84 1.73
877 913 2.388735 TCGATGGTGTTCTCAGCCTAT 58.611 47.619 0.00 0.00 40.84 2.57
878 914 1.847328 TCGATGGTGTTCTCAGCCTA 58.153 50.000 0.00 0.00 40.84 3.93
879 915 0.976641 TTCGATGGTGTTCTCAGCCT 59.023 50.000 0.00 0.00 40.84 4.58
884 920 1.986378 CTGTCGTTCGATGGTGTTCTC 59.014 52.381 0.00 0.00 0.00 2.87
889 925 1.194547 CCAAACTGTCGTTCGATGGTG 59.805 52.381 0.00 0.00 31.66 4.17
931 967 4.973055 TGCGACGTTTGACCCCCG 62.973 66.667 0.00 0.00 0.00 5.73
1285 1321 4.070552 GGCTGAGAGGACGGCGTT 62.071 66.667 16.19 0.00 42.39 4.84
1449 1485 4.351938 TCGGTGCGGGACTTGACG 62.352 66.667 0.00 0.00 0.00 4.35
1851 1887 0.526096 CATCCATTTTCTTGCCGGCG 60.526 55.000 23.90 8.74 0.00 6.46
1920 1956 4.021104 TCGAAAAGATCCAGAGCTTTCTCA 60.021 41.667 11.01 0.00 45.13 3.27
1991 2027 5.760253 GCTTGATTACAGCCTCTTATAAGCA 59.240 40.000 7.67 0.00 37.38 3.91
2008 2044 2.306805 TCTGTGTCATCCCAGCTTGATT 59.693 45.455 0.00 0.00 0.00 2.57
2103 2139 2.489938 TATCACACAACAGGCCCTTC 57.510 50.000 0.00 0.00 0.00 3.46
2118 2154 2.238646 AGCATCTTCCCACCGTTTATCA 59.761 45.455 0.00 0.00 0.00 2.15
2152 2188 2.305343 GCCTAGAATCAGCCATCTCCAT 59.695 50.000 0.00 0.00 0.00 3.41
2233 2269 3.243068 CCAAACAAGTTAAGTGCTTCGCT 60.243 43.478 0.00 0.00 0.00 4.93
2451 2487 4.722220 TCATTTCATCAAGGAGGGCATAG 58.278 43.478 0.00 0.00 0.00 2.23
2582 2618 1.235724 GGTCGGGACAAAACCTTCAG 58.764 55.000 0.75 0.00 0.00 3.02
2610 2646 8.677300 ACAAATCCATTGATGATACTGTTGTAC 58.323 33.333 0.00 0.00 41.85 2.90
2920 2956 7.202526 CCGGTAATAAAATTAGTGTAGACGGA 58.797 38.462 0.00 0.00 36.44 4.69
3143 3179 2.810439 GCAAAGGCCATGTGTTAACA 57.190 45.000 5.01 3.59 41.58 2.41
3345 3381 1.312815 GGCCAGCCAATATGTCAGAC 58.687 55.000 3.12 0.00 35.81 3.51
3491 3534 3.578282 CCATCTGGCCTGTTAAGGTTTTT 59.422 43.478 3.32 0.00 46.43 1.94
3516 3559 5.732633 TCAAATCCCAATGCTTATGTTTGG 58.267 37.500 0.00 0.00 39.69 3.28
3522 3565 7.520798 TCTCATACTCAAATCCCAATGCTTAT 58.479 34.615 0.00 0.00 0.00 1.73
3615 3658 7.045126 ACATGCTAGTAGATTCTTCCTGTAC 57.955 40.000 0.00 0.00 0.00 2.90
3720 3763 5.357878 AGAATAATCGCAAAGCATCAGGAAA 59.642 36.000 0.00 0.00 0.00 3.13
3762 3812 5.509498 AGCCTCAAGGTTTTGCTATATTCA 58.491 37.500 0.00 0.00 37.57 2.57
3904 3954 7.285629 CCTCATCTCACAAGTAGATGTAACCTA 59.714 40.741 11.64 0.00 46.84 3.08
3920 4074 3.055530 ACCTGACATTCACCTCATCTCAC 60.056 47.826 0.00 0.00 0.00 3.51
3953 4107 4.279671 ACATAGCTCTATGAGAAGAACCCG 59.720 45.833 20.25 0.00 44.22 5.28
3973 4127 9.865321 ACATACTAATGTTACTACGAAACACAT 57.135 29.630 0.00 0.00 44.07 3.21
3989 4187 6.238103 CGTCTGGTTTGCCTAACATACTAATG 60.238 42.308 1.85 0.00 38.55 1.90
4060 4258 5.069516 TCAGCAGATATAGTTGTGATCAGCA 59.930 40.000 0.00 0.00 35.29 4.41
4061 4259 5.536260 TCAGCAGATATAGTTGTGATCAGC 58.464 41.667 0.00 0.00 33.61 4.26
4062 4260 7.328982 GTGATCAGCAGATATAGTTGTGATCAG 59.671 40.741 19.99 0.00 45.71 2.90
4063 4261 7.150640 GTGATCAGCAGATATAGTTGTGATCA 58.849 38.462 18.02 18.02 43.96 2.92
4064 4262 7.150640 TGTGATCAGCAGATATAGTTGTGATC 58.849 38.462 0.00 15.46 39.41 2.92
4065 4263 7.059202 TGTGATCAGCAGATATAGTTGTGAT 57.941 36.000 0.00 0.00 33.72 3.06
4066 4264 6.469782 TGTGATCAGCAGATATAGTTGTGA 57.530 37.500 0.00 0.00 33.72 3.58
4067 4265 6.760298 AGTTGTGATCAGCAGATATAGTTGTG 59.240 38.462 0.00 0.00 33.72 3.33
4068 4266 6.882656 AGTTGTGATCAGCAGATATAGTTGT 58.117 36.000 0.00 0.00 33.72 3.32
4074 4272 8.476447 CCAGATATAGTTGTGATCAGCAGATAT 58.524 37.037 0.00 0.00 33.72 1.63
4075 4273 7.093596 CCCAGATATAGTTGTGATCAGCAGATA 60.094 40.741 0.00 0.00 33.72 1.98
4076 4274 6.295745 CCCAGATATAGTTGTGATCAGCAGAT 60.296 42.308 0.00 0.00 37.13 2.90
4077 4275 5.011431 CCCAGATATAGTTGTGATCAGCAGA 59.989 44.000 0.00 0.00 0.00 4.26
4078 4276 5.011431 TCCCAGATATAGTTGTGATCAGCAG 59.989 44.000 0.00 0.00 0.00 4.24
4141 4339 7.308710 GGACCTCTAATCTAATCTACTCGTTGG 60.309 44.444 0.00 0.00 0.00 3.77
4196 4394 2.224549 CGGAAACATAAAGCAACGGTCA 59.775 45.455 0.00 0.00 0.00 4.02
4227 4425 3.305539 CCATATGCCACCATTGTACATGC 60.306 47.826 0.00 0.00 32.85 4.06
4228 4426 4.143543 TCCATATGCCACCATTGTACATG 58.856 43.478 0.00 0.00 32.85 3.21
4229 4427 4.451891 TCCATATGCCACCATTGTACAT 57.548 40.909 0.00 0.00 32.85 2.29
4230 4428 3.941704 TCCATATGCCACCATTGTACA 57.058 42.857 0.00 0.00 32.85 2.90
4231 4429 5.312895 TGTATCCATATGCCACCATTGTAC 58.687 41.667 0.00 0.00 32.85 2.90
4232 4430 5.574970 TGTATCCATATGCCACCATTGTA 57.425 39.130 0.00 0.00 32.85 2.41
4233 4431 4.451891 TGTATCCATATGCCACCATTGT 57.548 40.909 0.00 0.00 32.85 2.71
4244 4442 7.441903 TGTCATGAGGCATATGTATCCATAT 57.558 36.000 4.29 0.00 43.54 1.78
4245 4443 6.872585 TGTCATGAGGCATATGTATCCATA 57.127 37.500 4.29 0.00 37.92 2.74
4246 4444 5.767277 TGTCATGAGGCATATGTATCCAT 57.233 39.130 4.29 1.04 34.97 3.41
4247 4445 5.565455 TTGTCATGAGGCATATGTATCCA 57.435 39.130 4.29 0.00 0.00 3.41
4248 4446 6.882610 TTTTGTCATGAGGCATATGTATCC 57.117 37.500 4.29 0.00 0.00 2.59
4249 4447 7.934457 ACTTTTTGTCATGAGGCATATGTATC 58.066 34.615 4.29 3.65 0.00 2.24
4250 4448 7.886629 ACTTTTTGTCATGAGGCATATGTAT 57.113 32.000 4.29 0.00 0.00 2.29
4251 4449 8.800370 TTACTTTTTGTCATGAGGCATATGTA 57.200 30.769 4.29 0.00 0.00 2.29
4252 4450 7.701539 TTACTTTTTGTCATGAGGCATATGT 57.298 32.000 4.29 0.00 0.00 2.29
4253 4451 9.590451 AAATTACTTTTTGTCATGAGGCATATG 57.410 29.630 0.00 0.00 0.00 1.78
4254 4452 9.590451 CAAATTACTTTTTGTCATGAGGCATAT 57.410 29.630 0.00 0.00 32.99 1.78
4255 4453 8.801299 TCAAATTACTTTTTGTCATGAGGCATA 58.199 29.630 0.00 0.00 37.73 3.14
4256 4454 7.669427 TCAAATTACTTTTTGTCATGAGGCAT 58.331 30.769 0.00 0.00 37.73 4.40
4257 4455 7.048629 TCAAATTACTTTTTGTCATGAGGCA 57.951 32.000 0.00 0.00 37.73 4.75
4258 4456 6.587608 CCTCAAATTACTTTTTGTCATGAGGC 59.412 38.462 0.00 0.00 37.73 4.70
4259 4457 7.661040 ACCTCAAATTACTTTTTGTCATGAGG 58.339 34.615 14.60 14.60 37.73 3.86
4260 4458 9.612620 GTACCTCAAATTACTTTTTGTCATGAG 57.387 33.333 0.00 0.00 37.73 2.90
4261 4459 8.573035 GGTACCTCAAATTACTTTTTGTCATGA 58.427 33.333 4.06 0.00 37.73 3.07
4262 4460 8.576442 AGGTACCTCAAATTACTTTTTGTCATG 58.424 33.333 9.21 0.00 37.73 3.07
4263 4461 8.706322 AGGTACCTCAAATTACTTTTTGTCAT 57.294 30.769 9.21 0.00 37.73 3.06
4264 4462 9.059260 GTAGGTACCTCAAATTACTTTTTGTCA 57.941 33.333 20.32 0.00 37.73 3.58
4265 4463 9.059260 TGTAGGTACCTCAAATTACTTTTTGTC 57.941 33.333 20.32 0.00 37.73 3.18
4266 4464 8.983702 TGTAGGTACCTCAAATTACTTTTTGT 57.016 30.769 20.32 0.00 37.73 2.83
4297 4495 2.328319 AGCTTGCATTGGGGAGAAAAA 58.672 42.857 0.00 0.00 0.00 1.94
4298 4496 2.014010 AGCTTGCATTGGGGAGAAAA 57.986 45.000 0.00 0.00 0.00 2.29
4299 4497 2.446435 GTAGCTTGCATTGGGGAGAAA 58.554 47.619 0.00 0.00 0.00 2.52
4300 4498 1.340991 GGTAGCTTGCATTGGGGAGAA 60.341 52.381 0.00 0.00 0.00 2.87
4301 4499 0.255890 GGTAGCTTGCATTGGGGAGA 59.744 55.000 0.00 0.00 0.00 3.71
4302 4500 0.034186 TGGTAGCTTGCATTGGGGAG 60.034 55.000 0.00 0.00 0.00 4.30
4303 4501 0.323360 GTGGTAGCTTGCATTGGGGA 60.323 55.000 0.00 0.00 0.00 4.81
4304 4502 0.323725 AGTGGTAGCTTGCATTGGGG 60.324 55.000 0.00 0.00 0.00 4.96
4305 4503 2.292267 CTAGTGGTAGCTTGCATTGGG 58.708 52.381 0.00 0.00 0.00 4.12
4306 4504 2.679837 CACTAGTGGTAGCTTGCATTGG 59.320 50.000 15.49 0.00 0.00 3.16
4307 4505 2.679837 CCACTAGTGGTAGCTTGCATTG 59.320 50.000 30.57 3.32 45.53 2.82
4308 4506 2.991250 CCACTAGTGGTAGCTTGCATT 58.009 47.619 30.57 0.00 45.53 3.56
4309 4507 2.698855 CCACTAGTGGTAGCTTGCAT 57.301 50.000 30.57 0.00 45.53 3.96
4320 4518 8.375506 TCTATTTCATAATTAGGCCCACTAGTG 58.624 37.037 16.34 16.34 32.16 2.74
4321 4519 8.506196 TCTATTTCATAATTAGGCCCACTAGT 57.494 34.615 0.00 0.00 32.16 2.57
4322 4520 9.793259 TTTCTATTTCATAATTAGGCCCACTAG 57.207 33.333 0.00 0.00 32.16 2.57
4324 4522 9.487442 TTTTTCTATTTCATAATTAGGCCCACT 57.513 29.630 0.00 0.00 0.00 4.00
4345 4543 9.974750 GCATGTGTACTAGAGTCTTTATTTTTC 57.025 33.333 0.00 0.00 0.00 2.29
4346 4544 9.502091 TGCATGTGTACTAGAGTCTTTATTTTT 57.498 29.630 0.00 0.00 0.00 1.94
4347 4545 9.672673 ATGCATGTGTACTAGAGTCTTTATTTT 57.327 29.630 0.00 0.00 0.00 1.82
4348 4546 9.319143 GATGCATGTGTACTAGAGTCTTTATTT 57.681 33.333 2.46 0.00 0.00 1.40
4349 4547 8.700051 AGATGCATGTGTACTAGAGTCTTTATT 58.300 33.333 2.46 0.00 0.00 1.40
4350 4548 8.243961 AGATGCATGTGTACTAGAGTCTTTAT 57.756 34.615 2.46 0.00 0.00 1.40
4351 4549 7.558081 AGAGATGCATGTGTACTAGAGTCTTTA 59.442 37.037 2.46 0.00 0.00 1.85
4352 4550 6.379703 AGAGATGCATGTGTACTAGAGTCTTT 59.620 38.462 2.46 0.00 0.00 2.52
4353 4551 5.890985 AGAGATGCATGTGTACTAGAGTCTT 59.109 40.000 2.46 0.00 0.00 3.01
4354 4552 5.445069 AGAGATGCATGTGTACTAGAGTCT 58.555 41.667 2.46 0.00 0.00 3.24
4355 4553 5.766150 AGAGATGCATGTGTACTAGAGTC 57.234 43.478 2.46 0.00 0.00 3.36
4356 4554 6.361433 AGTAGAGATGCATGTGTACTAGAGT 58.639 40.000 26.28 7.72 30.07 3.24
4357 4555 6.875948 AGTAGAGATGCATGTGTACTAGAG 57.124 41.667 26.28 0.00 30.07 2.43
4358 4556 7.646548 AAAGTAGAGATGCATGTGTACTAGA 57.353 36.000 27.25 0.00 30.49 2.43
4359 4557 7.976175 TGAAAAGTAGAGATGCATGTGTACTAG 59.024 37.037 27.25 0.00 30.49 2.57
4360 4558 7.759886 GTGAAAAGTAGAGATGCATGTGTACTA 59.240 37.037 27.25 13.62 30.49 1.82
4361 4559 6.591834 GTGAAAAGTAGAGATGCATGTGTACT 59.408 38.462 23.22 23.22 32.62 2.73
4362 4560 6.591834 AGTGAAAAGTAGAGATGCATGTGTAC 59.408 38.462 19.88 19.88 0.00 2.90
4363 4561 6.701340 AGTGAAAAGTAGAGATGCATGTGTA 58.299 36.000 2.46 0.00 0.00 2.90
4364 4562 5.555017 AGTGAAAAGTAGAGATGCATGTGT 58.445 37.500 2.46 0.00 0.00 3.72
4365 4563 5.064452 GGAGTGAAAAGTAGAGATGCATGTG 59.936 44.000 2.46 0.00 0.00 3.21
4366 4564 5.181748 GGAGTGAAAAGTAGAGATGCATGT 58.818 41.667 2.46 0.00 0.00 3.21
4367 4565 5.181009 TGGAGTGAAAAGTAGAGATGCATG 58.819 41.667 2.46 0.00 0.00 4.06
4368 4566 5.426689 TGGAGTGAAAAGTAGAGATGCAT 57.573 39.130 0.00 0.00 0.00 3.96
4369 4567 4.890158 TGGAGTGAAAAGTAGAGATGCA 57.110 40.909 0.00 0.00 0.00 3.96
4370 4568 4.393371 GGTTGGAGTGAAAAGTAGAGATGC 59.607 45.833 0.00 0.00 0.00 3.91
4371 4569 5.799213 AGGTTGGAGTGAAAAGTAGAGATG 58.201 41.667 0.00 0.00 0.00 2.90
4372 4570 6.441088 AAGGTTGGAGTGAAAAGTAGAGAT 57.559 37.500 0.00 0.00 0.00 2.75
4373 4571 5.888982 AAGGTTGGAGTGAAAAGTAGAGA 57.111 39.130 0.00 0.00 0.00 3.10
4374 4572 6.542370 TGAAAAGGTTGGAGTGAAAAGTAGAG 59.458 38.462 0.00 0.00 0.00 2.43
4375 4573 6.419791 TGAAAAGGTTGGAGTGAAAAGTAGA 58.580 36.000 0.00 0.00 0.00 2.59
4376 4574 6.318900 ACTGAAAAGGTTGGAGTGAAAAGTAG 59.681 38.462 0.00 0.00 0.00 2.57
4377 4575 6.184789 ACTGAAAAGGTTGGAGTGAAAAGTA 58.815 36.000 0.00 0.00 0.00 2.24
4378 4576 5.016831 ACTGAAAAGGTTGGAGTGAAAAGT 58.983 37.500 0.00 0.00 0.00 2.66
4379 4577 5.582689 ACTGAAAAGGTTGGAGTGAAAAG 57.417 39.130 0.00 0.00 0.00 2.27
4380 4578 5.993748 AACTGAAAAGGTTGGAGTGAAAA 57.006 34.783 0.00 0.00 0.00 2.29
4381 4579 5.993748 AAACTGAAAAGGTTGGAGTGAAA 57.006 34.783 0.00 0.00 0.00 2.69
4382 4580 5.993748 AAAACTGAAAAGGTTGGAGTGAA 57.006 34.783 0.00 0.00 0.00 3.18
4383 4581 5.245075 ACAAAAACTGAAAAGGTTGGAGTGA 59.755 36.000 0.00 0.00 0.00 3.41
4384 4582 5.478407 ACAAAAACTGAAAAGGTTGGAGTG 58.522 37.500 0.00 0.00 0.00 3.51
4385 4583 5.245075 TGACAAAAACTGAAAAGGTTGGAGT 59.755 36.000 0.00 0.00 0.00 3.85
4386 4584 5.576774 GTGACAAAAACTGAAAAGGTTGGAG 59.423 40.000 0.00 0.00 0.00 3.86
4387 4585 5.245075 AGTGACAAAAACTGAAAAGGTTGGA 59.755 36.000 0.00 0.00 0.00 3.53
4388 4586 5.348451 CAGTGACAAAAACTGAAAAGGTTGG 59.652 40.000 0.00 0.00 46.55 3.77
4389 4587 5.348451 CCAGTGACAAAAACTGAAAAGGTTG 59.652 40.000 5.17 0.00 46.55 3.77
4390 4588 5.245075 TCCAGTGACAAAAACTGAAAAGGTT 59.755 36.000 5.17 0.00 46.55 3.50
4391 4589 4.770010 TCCAGTGACAAAAACTGAAAAGGT 59.230 37.500 5.17 0.00 46.55 3.50
4392 4590 5.323371 TCCAGTGACAAAAACTGAAAAGG 57.677 39.130 5.17 0.00 46.55 3.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.