Multiple sequence alignment - TraesCS3B01G249000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G249000 chr3B 100.000 3340 0 0 2345 5684 396880728 396877389 0.000000e+00 6168.0
1 TraesCS3B01G249000 chr3B 100.000 1849 0 0 1 1849 396883072 396881224 0.000000e+00 3415.0
2 TraesCS3B01G249000 chr3B 100.000 39 0 0 1660 1698 396881377 396881339 7.900000e-09 73.1
3 TraesCS3B01G249000 chr3B 100.000 39 0 0 1696 1734 396881413 396881375 7.900000e-09 73.1
4 TraesCS3B01G249000 chr3D 97.836 2403 44 4 2375 4773 323086503 323084105 0.000000e+00 4143.0
5 TraesCS3B01G249000 chr3D 96.224 927 24 5 782 1698 323087875 323086950 0.000000e+00 1507.0
6 TraesCS3B01G249000 chr3D 89.195 472 31 10 5217 5682 323050640 323050183 6.390000e-159 571.0
7 TraesCS3B01G249000 chr3D 83.307 629 83 11 2945 3554 275109500 275108875 1.380000e-155 560.0
8 TraesCS3B01G249000 chr3D 82.944 557 63 11 1 532 323094677 323094128 1.850000e-129 473.0
9 TraesCS3B01G249000 chr3D 93.750 256 10 4 4924 5177 323084113 323083862 4.160000e-101 379.0
10 TraesCS3B01G249000 chr3D 99.342 152 1 0 1696 1847 323086988 323086837 5.610000e-70 276.0
11 TraesCS3B01G249000 chr3A 95.953 2224 70 9 2558 4773 400099039 400101250 0.000000e+00 3591.0
12 TraesCS3B01G249000 chr3A 88.139 1585 103 34 156 1698 400096901 400098442 0.000000e+00 1807.0
13 TraesCS3B01G249000 chr3A 86.761 355 36 6 5329 5682 400101923 400102267 8.930000e-103 385.0
14 TraesCS3B01G249000 chr3A 98.026 152 3 0 4774 4925 637292072 637291921 1.210000e-66 265.0
15 TraesCS3B01G249000 chr3A 95.652 115 5 0 2444 2558 400098857 400098971 9.730000e-43 185.0
16 TraesCS3B01G249000 chr3A 90.226 133 7 1 1696 1822 400098404 400098536 9.790000e-38 169.0
17 TraesCS3B01G249000 chr3A 91.250 80 5 2 5100 5177 400101687 400101766 2.170000e-19 108.0
18 TraesCS3B01G249000 chr3A 97.561 41 1 0 4924 4964 400101242 400101282 2.840000e-08 71.3
19 TraesCS3B01G249000 chr3A 100.000 34 0 0 2402 2435 400098790 400098823 4.750000e-06 63.9
20 TraesCS3B01G249000 chr2A 85.942 626 64 15 2945 3551 515951649 515952269 0.000000e+00 647.0
21 TraesCS3B01G249000 chr2A 80.278 360 55 11 5254 5606 631622338 631622688 2.030000e-64 257.0
22 TraesCS3B01G249000 chr4A 85.120 625 75 11 2946 3554 464564424 464563802 1.740000e-174 623.0
23 TraesCS3B01G249000 chr4D 83.680 625 82 10 2945 3551 275881496 275882118 6.390000e-159 571.0
24 TraesCS3B01G249000 chr5A 83.492 630 78 14 2945 3551 170840119 170840745 1.070000e-156 564.0
25 TraesCS3B01G249000 chr7A 83.280 628 85 10 2945 3554 438514875 438514250 1.380000e-155 560.0
26 TraesCS3B01G249000 chr7A 97.436 156 4 0 4769 4924 161728330 161728485 3.380000e-67 267.0
27 TraesCS3B01G249000 chr7D 83.200 625 85 10 2945 3551 209683601 209684223 6.430000e-154 555.0
28 TraesCS3B01G249000 chr1D 81.870 353 53 6 5277 5623 437861428 437861081 2.590000e-73 287.0
29 TraesCS3B01G249000 chr1D 95.833 48 2 0 5557 5604 301557057 301557010 1.700000e-10 78.7
30 TraesCS3B01G249000 chr2B 79.310 435 65 14 5257 5682 321651733 321651315 1.210000e-71 281.0
31 TraesCS3B01G249000 chr2B 98.026 152 3 0 4774 4925 62547535 62547686 1.210000e-66 265.0
32 TraesCS3B01G249000 chr2B 75.181 415 80 16 5257 5661 570920751 570921152 2.110000e-39 174.0
33 TraesCS3B01G249000 chr1B 82.067 329 50 6 5298 5623 593492117 593491795 7.260000e-69 272.0
34 TraesCS3B01G249000 chr5B 98.026 152 3 0 4774 4925 511067124 511066973 1.210000e-66 265.0
35 TraesCS3B01G249000 chr5B 98.013 151 3 0 4773 4923 502027044 502027194 4.370000e-66 263.0
36 TraesCS3B01G249000 chr6B 98.013 151 3 0 4773 4923 585570357 585570207 4.370000e-66 263.0
37 TraesCS3B01G249000 chr2D 98.013 151 3 0 4774 4924 357697146 357696996 4.370000e-66 263.0
38 TraesCS3B01G249000 chr2D 98.000 150 3 0 4774 4923 377156039 377155890 1.570000e-65 261.0
39 TraesCS3B01G249000 chr2D 78.700 277 37 12 5419 5682 422097803 422097536 1.270000e-36 165.0
40 TraesCS3B01G249000 chr2D 86.538 52 7 0 41 92 38059316 38059367 2.210000e-04 58.4
41 TraesCS3B01G249000 chr6A 98.000 150 3 0 4774 4923 80820113 80819964 1.570000e-65 261.0
42 TraesCS3B01G249000 chr5D 76.526 213 36 11 5457 5663 233755358 233755562 2.800000e-18 104.0
43 TraesCS3B01G249000 chr4B 82.456 114 20 0 123 236 671680566 671680453 3.620000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G249000 chr3B 396877389 396883072 5683 True 2432.300 6168 100.00000 1 5684 4 chr3B.!!$R1 5683
1 TraesCS3B01G249000 chr3D 323083862 323087875 4013 True 1576.250 4143 96.78800 782 5177 4 chr3D.!!$R4 4395
2 TraesCS3B01G249000 chr3D 275108875 275109500 625 True 560.000 560 83.30700 2945 3554 1 chr3D.!!$R1 609
3 TraesCS3B01G249000 chr3D 323094128 323094677 549 True 473.000 473 82.94400 1 532 1 chr3D.!!$R3 531
4 TraesCS3B01G249000 chr3A 400096901 400102267 5366 False 797.525 3591 93.19275 156 5682 8 chr3A.!!$F1 5526
5 TraesCS3B01G249000 chr2A 515951649 515952269 620 False 647.000 647 85.94200 2945 3551 1 chr2A.!!$F1 606
6 TraesCS3B01G249000 chr4A 464563802 464564424 622 True 623.000 623 85.12000 2946 3554 1 chr4A.!!$R1 608
7 TraesCS3B01G249000 chr4D 275881496 275882118 622 False 571.000 571 83.68000 2945 3551 1 chr4D.!!$F1 606
8 TraesCS3B01G249000 chr5A 170840119 170840745 626 False 564.000 564 83.49200 2945 3551 1 chr5A.!!$F1 606
9 TraesCS3B01G249000 chr7A 438514250 438514875 625 True 560.000 560 83.28000 2945 3554 1 chr7A.!!$R1 609
10 TraesCS3B01G249000 chr7D 209683601 209684223 622 False 555.000 555 83.20000 2945 3551 1 chr7D.!!$F1 606

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
196 198 0.166814 GAGCTCGGACATTGCAACAC 59.833 55.000 0.00 0.00 0.00 3.32 F
197 199 0.534877 AGCTCGGACATTGCAACACA 60.535 50.000 0.00 0.00 0.00 3.72 F
313 315 0.610174 CTGCTTGCAGGACTGAGGTA 59.390 55.000 14.25 0.00 0.00 3.08 F
457 482 0.897621 GCAAAGCCCCTAAGTGCAAT 59.102 50.000 0.00 0.00 35.28 3.56 F
1033 1077 0.918983 AAAGATCCCCGATCCAGCAA 59.081 50.000 0.00 0.00 39.66 3.91 F
1567 1612 1.828979 ATTAACCGGCGGATGTTTGT 58.171 45.000 35.78 4.66 0.00 2.83 F
2854 3011 1.678101 GCACAAACATCCTCTATGCCC 59.322 52.381 0.00 0.00 39.39 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1553 1598 0.390603 TCTACACAAACATCCGCCGG 60.391 55.000 0.00 0.00 0.00 6.13 R
1718 1763 3.437213 TGTCCGATTCTTCCTACCAAGA 58.563 45.455 0.00 0.00 0.00 3.02 R
1719 1764 3.887621 TGTCCGATTCTTCCTACCAAG 57.112 47.619 0.00 0.00 0.00 3.61 R
2379 2441 2.093553 AGGAGAAGTGAAGCAGATGAGC 60.094 50.000 0.00 0.00 0.00 4.26 R
2600 2756 1.757682 ACAGAGGAACCGCAAAACAA 58.242 45.000 0.00 0.00 0.00 2.83 R
3379 3554 1.403493 CGCTGTTGTATGCGCAAAAA 58.597 45.000 17.11 6.41 45.50 1.94 R
4771 4954 0.105778 GTCCCCATAGCACTGCTCTC 59.894 60.000 6.86 0.00 40.44 3.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.279741 TGATTGACCGCTCATACAAGC 58.720 47.619 0.00 0.00 38.97 4.01
27 28 1.522092 CGCTCATACAAGCCCCTCA 59.478 57.895 0.00 0.00 39.17 3.86
33 34 1.492176 CATACAAGCCCCTCACATCCT 59.508 52.381 0.00 0.00 0.00 3.24
34 35 0.911769 TACAAGCCCCTCACATCCTG 59.088 55.000 0.00 0.00 0.00 3.86
69 71 2.943033 CGACAAGGGTCTTGTTTCAGTT 59.057 45.455 13.56 0.00 42.05 3.16
81 83 7.201635 GGTCTTGTTTCAGTTGATTTTTGCAAT 60.202 33.333 0.00 0.00 0.00 3.56
83 85 9.033481 TCTTGTTTCAGTTGATTTTTGCAATAG 57.967 29.630 0.00 0.00 0.00 1.73
97 99 6.798427 TTTGCAATAGAGGACTAGATCAGT 57.202 37.500 0.00 0.00 41.47 3.41
100 102 8.484214 TTGCAATAGAGGACTAGATCAGTAAT 57.516 34.615 0.00 0.00 37.72 1.89
101 103 9.588096 TTGCAATAGAGGACTAGATCAGTAATA 57.412 33.333 0.00 0.00 37.72 0.98
133 135 4.944962 TTGGTGATGAAAACATAGCTCG 57.055 40.909 0.00 0.00 0.00 5.03
138 140 5.810587 GGTGATGAAAACATAGCTCGAGTTA 59.189 40.000 15.13 13.31 0.00 2.24
148 150 0.714439 GCTCGAGTTACAGGAAACGC 59.286 55.000 15.13 0.00 34.46 4.84
180 182 2.034053 CCCGATGTTAGAGAGTGAGAGC 59.966 54.545 0.00 0.00 0.00 4.09
196 198 0.166814 GAGCTCGGACATTGCAACAC 59.833 55.000 0.00 0.00 0.00 3.32
197 199 0.534877 AGCTCGGACATTGCAACACA 60.535 50.000 0.00 0.00 0.00 3.72
251 253 2.337879 AAACACTGAAGGAGCGCCCA 62.338 55.000 15.92 0.00 37.41 5.36
272 274 2.987547 TGGGAGGTCGTCACGGTC 60.988 66.667 0.00 0.00 0.00 4.79
293 295 3.699894 CTGGAGTGGAGCTGGCGT 61.700 66.667 0.00 0.00 0.00 5.68
302 304 4.631247 AGCTGGCGTCTGCTTGCA 62.631 61.111 16.28 0.00 44.14 4.08
305 307 3.889134 CTGGCGTCTGCTTGCAGGA 62.889 63.158 20.62 6.70 42.25 3.86
313 315 0.610174 CTGCTTGCAGGACTGAGGTA 59.390 55.000 14.25 0.00 0.00 3.08
340 342 1.671054 GTAGCAACTCCGGCAAGCA 60.671 57.895 0.00 0.00 0.00 3.91
341 343 1.072332 TAGCAACTCCGGCAAGCAA 59.928 52.632 0.00 0.00 0.00 3.91
342 344 1.234615 TAGCAACTCCGGCAAGCAAC 61.235 55.000 0.00 0.00 0.00 4.17
361 363 3.512516 GCGCTCCATGCCCAAGAC 61.513 66.667 0.00 0.00 38.78 3.01
452 477 2.080654 TTGTTGCAAAGCCCCTAAGT 57.919 45.000 0.00 0.00 0.00 2.24
457 482 0.897621 GCAAAGCCCCTAAGTGCAAT 59.102 50.000 0.00 0.00 35.28 3.56
459 484 2.695147 GCAAAGCCCCTAAGTGCAATAT 59.305 45.455 0.00 0.00 35.28 1.28
478 503 2.065899 TGGTAGCTGTTGCAAAGGTT 57.934 45.000 15.18 6.58 42.74 3.50
484 509 2.099756 AGCTGTTGCAAAGGTTCTCAAC 59.900 45.455 0.00 0.00 42.74 3.18
495 520 0.951040 GTTCTCAACTGGCTGGGTCG 60.951 60.000 0.00 0.00 0.00 4.79
503 528 1.612146 TGGCTGGGTCGGAAGATCA 60.612 57.895 0.00 0.00 45.13 2.92
505 530 1.330655 GGCTGGGTCGGAAGATCAGA 61.331 60.000 0.00 0.00 45.13 3.27
509 534 1.033574 GGGTCGGAAGATCAGACGAT 58.966 55.000 8.50 0.00 45.13 3.73
516 541 3.926527 CGGAAGATCAGACGATTGTTTCA 59.073 43.478 0.00 0.00 29.66 2.69
565 590 5.861251 CGGCTGATCTAGTTGAGTTATCATC 59.139 44.000 0.00 0.00 34.73 2.92
568 593 6.332735 TGATCTAGTTGAGTTATCATCCGG 57.667 41.667 0.00 0.00 34.73 5.14
575 600 2.028484 TTATCATCCGGCGGACGC 59.972 61.111 33.71 8.39 42.52 5.19
593 618 2.555123 CGTAGCATTGTGCCCTTGT 58.445 52.632 0.00 0.00 46.52 3.16
596 621 2.486203 CGTAGCATTGTGCCCTTGTTTA 59.514 45.455 0.00 0.00 46.52 2.01
597 622 3.128589 CGTAGCATTGTGCCCTTGTTTAT 59.871 43.478 0.00 0.00 46.52 1.40
599 624 3.929094 AGCATTGTGCCCTTGTTTATTG 58.071 40.909 0.00 0.00 46.52 1.90
600 625 2.416202 GCATTGTGCCCTTGTTTATTGC 59.584 45.455 0.00 0.00 37.42 3.56
601 626 3.865684 GCATTGTGCCCTTGTTTATTGCT 60.866 43.478 0.00 0.00 37.42 3.91
627 652 6.515272 TTTTAGGAGAGATTGGTTCATTGC 57.485 37.500 0.00 0.00 0.00 3.56
630 655 4.268359 AGGAGAGATTGGTTCATTGCTTC 58.732 43.478 0.00 0.00 0.00 3.86
634 659 6.264841 AGAGATTGGTTCATTGCTTCTTTC 57.735 37.500 0.00 0.00 0.00 2.62
639 664 7.989170 AGATTGGTTCATTGCTTCTTTCTTTTT 59.011 29.630 0.00 0.00 0.00 1.94
670 695 5.957842 AGAAAATTGGTTCATTGCTACGA 57.042 34.783 0.00 0.00 0.00 3.43
672 697 6.555315 AGAAAATTGGTTCATTGCTACGATC 58.445 36.000 0.00 0.00 0.00 3.69
675 700 2.627945 TGGTTCATTGCTACGATCACC 58.372 47.619 0.00 0.00 0.00 4.02
677 702 1.940613 GTTCATTGCTACGATCACCCC 59.059 52.381 0.00 0.00 0.00 4.95
678 703 1.496060 TCATTGCTACGATCACCCCT 58.504 50.000 0.00 0.00 0.00 4.79
679 704 2.673258 TCATTGCTACGATCACCCCTA 58.327 47.619 0.00 0.00 0.00 3.53
680 705 3.035363 TCATTGCTACGATCACCCCTAA 58.965 45.455 0.00 0.00 0.00 2.69
683 708 2.742348 TGCTACGATCACCCCTAAGAA 58.258 47.619 0.00 0.00 0.00 2.52
684 709 3.101437 TGCTACGATCACCCCTAAGAAA 58.899 45.455 0.00 0.00 0.00 2.52
685 710 3.516300 TGCTACGATCACCCCTAAGAAAA 59.484 43.478 0.00 0.00 0.00 2.29
686 711 4.020039 TGCTACGATCACCCCTAAGAAAAA 60.020 41.667 0.00 0.00 0.00 1.94
687 712 4.571176 GCTACGATCACCCCTAAGAAAAAG 59.429 45.833 0.00 0.00 0.00 2.27
688 713 3.344515 ACGATCACCCCTAAGAAAAAGC 58.655 45.455 0.00 0.00 0.00 3.51
689 714 3.244770 ACGATCACCCCTAAGAAAAAGCA 60.245 43.478 0.00 0.00 0.00 3.91
690 715 3.756434 CGATCACCCCTAAGAAAAAGCAA 59.244 43.478 0.00 0.00 0.00 3.91
691 716 4.399303 CGATCACCCCTAAGAAAAAGCAAT 59.601 41.667 0.00 0.00 0.00 3.56
693 718 4.735369 TCACCCCTAAGAAAAAGCAATGA 58.265 39.130 0.00 0.00 0.00 2.57
694 719 5.144100 TCACCCCTAAGAAAAAGCAATGAA 58.856 37.500 0.00 0.00 0.00 2.57
696 721 4.283467 ACCCCTAAGAAAAAGCAATGAACC 59.717 41.667 0.00 0.00 0.00 3.62
698 723 5.221621 CCCCTAAGAAAAAGCAATGAACCAA 60.222 40.000 0.00 0.00 0.00 3.67
699 724 6.466812 CCCTAAGAAAAAGCAATGAACCAAT 58.533 36.000 0.00 0.00 0.00 3.16
700 725 6.936335 CCCTAAGAAAAAGCAATGAACCAATT 59.064 34.615 0.00 0.00 0.00 2.32
701 726 7.445096 CCCTAAGAAAAAGCAATGAACCAATTT 59.555 33.333 0.00 0.00 0.00 1.82
702 727 8.839343 CCTAAGAAAAAGCAATGAACCAATTTT 58.161 29.630 0.00 0.00 0.00 1.82
703 728 9.654417 CTAAGAAAAAGCAATGAACCAATTTTG 57.346 29.630 0.00 0.00 0.00 2.44
704 729 7.628769 AGAAAAAGCAATGAACCAATTTTGT 57.371 28.000 0.00 0.00 0.00 2.83
705 730 8.729805 AGAAAAAGCAATGAACCAATTTTGTA 57.270 26.923 0.00 0.00 0.00 2.41
706 731 8.829612 AGAAAAAGCAATGAACCAATTTTGTAG 58.170 29.630 0.00 0.00 0.00 2.74
707 732 6.544038 AAAGCAATGAACCAATTTTGTAGC 57.456 33.333 0.00 0.00 0.00 3.58
708 733 5.212532 AGCAATGAACCAATTTTGTAGCA 57.787 34.783 0.00 0.00 0.00 3.49
709 734 5.609423 AGCAATGAACCAATTTTGTAGCAA 58.391 33.333 0.00 0.00 0.00 3.91
710 735 6.232692 AGCAATGAACCAATTTTGTAGCAAT 58.767 32.000 0.00 0.00 0.00 3.56
711 736 6.148150 AGCAATGAACCAATTTTGTAGCAATG 59.852 34.615 0.00 0.00 0.00 2.82
712 737 6.147492 GCAATGAACCAATTTTGTAGCAATGA 59.853 34.615 0.00 0.00 0.00 2.57
713 738 7.307870 GCAATGAACCAATTTTGTAGCAATGAA 60.308 33.333 0.00 0.00 0.00 2.57
714 739 7.656707 ATGAACCAATTTTGTAGCAATGAAC 57.343 32.000 0.00 0.00 0.00 3.18
722 747 9.171701 CAATTTTGTAGCAATGAACCAATTTTG 57.828 29.630 0.00 0.00 0.00 2.44
732 757 4.376146 TGAACCAATTTTGTAAGCTTGGC 58.624 39.130 9.86 2.36 41.50 4.52
735 760 2.038295 CCAATTTTGTAAGCTTGGCCCA 59.962 45.455 9.86 0.00 32.44 5.36
758 783 1.377333 GGAGGTCTGGGCCTTTTCG 60.377 63.158 4.53 0.00 39.34 3.46
759 784 1.377333 GAGGTCTGGGCCTTTTCGG 60.377 63.158 4.53 0.00 39.34 4.30
866 894 2.279120 GATCTCCTCTGCGCCGTG 60.279 66.667 4.18 0.00 0.00 4.94
978 1012 2.650322 CGCCTCTACTCTCTCTCCTTT 58.350 52.381 0.00 0.00 0.00 3.11
1004 1038 1.813753 ACCGATCCAAACCATCGCG 60.814 57.895 0.00 0.00 41.55 5.87
1006 1040 1.490693 CCGATCCAAACCATCGCGAG 61.491 60.000 16.66 4.02 41.55 5.03
1033 1077 0.918983 AAAGATCCCCGATCCAGCAA 59.081 50.000 0.00 0.00 39.66 3.91
1420 1464 3.749064 GACGCCGTCTCCTCTGCA 61.749 66.667 10.56 0.00 0.00 4.41
1496 1540 4.517285 TCTACCTTGAACTTGATGATGCC 58.483 43.478 0.00 0.00 0.00 4.40
1567 1612 1.828979 ATTAACCGGCGGATGTTTGT 58.171 45.000 35.78 4.66 0.00 2.83
1684 1729 5.906113 ACGATGAGTTGACTTACATCTCT 57.094 39.130 0.00 0.00 42.52 3.10
1685 1730 6.274157 ACGATGAGTTGACTTACATCTCTT 57.726 37.500 0.00 0.00 42.52 2.85
1686 1731 6.096036 ACGATGAGTTGACTTACATCTCTTG 58.904 40.000 0.00 0.00 42.52 3.02
1687 1732 5.518128 CGATGAGTTGACTTACATCTCTTGG 59.482 44.000 0.00 0.00 42.52 3.61
1688 1733 5.808366 TGAGTTGACTTACATCTCTTGGT 57.192 39.130 0.00 0.00 42.52 3.67
1689 1734 6.911250 TGAGTTGACTTACATCTCTTGGTA 57.089 37.500 0.00 0.00 42.52 3.25
1690 1735 6.925211 TGAGTTGACTTACATCTCTTGGTAG 58.075 40.000 0.00 0.00 42.52 3.18
1691 1736 6.071334 TGAGTTGACTTACATCTCTTGGTAGG 60.071 42.308 0.00 0.00 42.52 3.18
1692 1737 6.017192 AGTTGACTTACATCTCTTGGTAGGA 58.983 40.000 0.00 0.00 0.00 2.94
1693 1738 6.497259 AGTTGACTTACATCTCTTGGTAGGAA 59.503 38.462 0.00 0.00 0.00 3.36
1694 1739 6.531503 TGACTTACATCTCTTGGTAGGAAG 57.468 41.667 0.00 0.00 0.00 3.46
1695 1740 6.253758 TGACTTACATCTCTTGGTAGGAAGA 58.746 40.000 0.00 0.00 0.00 2.87
1696 1741 6.724441 TGACTTACATCTCTTGGTAGGAAGAA 59.276 38.462 0.00 0.00 31.52 2.52
1697 1742 7.400339 TGACTTACATCTCTTGGTAGGAAGAAT 59.600 37.037 0.00 0.00 31.52 2.40
1698 1743 8.840200 ACTTACATCTCTTGGTAGGAAGAATA 57.160 34.615 0.00 0.00 31.52 1.75
1699 1744 8.697292 ACTTACATCTCTTGGTAGGAAGAATAC 58.303 37.037 0.00 0.00 31.52 1.89
1700 1745 6.150396 ACATCTCTTGGTAGGAAGAATACG 57.850 41.667 0.00 0.00 31.52 3.06
1701 1746 5.892119 ACATCTCTTGGTAGGAAGAATACGA 59.108 40.000 0.00 0.00 31.52 3.43
1702 1747 6.551601 ACATCTCTTGGTAGGAAGAATACGAT 59.448 38.462 0.00 0.00 31.52 3.73
1703 1748 6.392625 TCTCTTGGTAGGAAGAATACGATG 57.607 41.667 0.00 0.00 31.52 3.84
1704 1749 6.127101 TCTCTTGGTAGGAAGAATACGATGA 58.873 40.000 0.00 0.00 31.52 2.92
1705 1750 6.263392 TCTCTTGGTAGGAAGAATACGATGAG 59.737 42.308 0.00 0.00 35.91 2.90
1706 1751 5.892119 TCTTGGTAGGAAGAATACGATGAGT 59.108 40.000 0.00 0.00 0.00 3.41
1707 1752 6.380274 TCTTGGTAGGAAGAATACGATGAGTT 59.620 38.462 0.00 0.00 0.00 3.01
1708 1753 5.902681 TGGTAGGAAGAATACGATGAGTTG 58.097 41.667 0.00 0.00 0.00 3.16
1709 1754 5.655090 TGGTAGGAAGAATACGATGAGTTGA 59.345 40.000 0.00 0.00 0.00 3.18
1710 1755 5.978322 GGTAGGAAGAATACGATGAGTTGAC 59.022 44.000 0.00 0.00 0.00 3.18
1711 1756 5.923733 AGGAAGAATACGATGAGTTGACT 57.076 39.130 0.00 0.00 0.00 3.41
1712 1757 6.287589 AGGAAGAATACGATGAGTTGACTT 57.712 37.500 0.00 0.00 0.00 3.01
1713 1758 7.406031 AGGAAGAATACGATGAGTTGACTTA 57.594 36.000 0.00 0.00 0.00 2.24
1714 1759 7.259161 AGGAAGAATACGATGAGTTGACTTAC 58.741 38.462 0.00 0.00 0.00 2.34
1715 1760 7.033791 GGAAGAATACGATGAGTTGACTTACA 58.966 38.462 0.00 0.00 0.00 2.41
1716 1761 7.707035 GGAAGAATACGATGAGTTGACTTACAT 59.293 37.037 0.00 0.00 0.00 2.29
1717 1762 8.635877 AAGAATACGATGAGTTGACTTACATC 57.364 34.615 0.00 0.00 36.70 3.06
1718 1763 8.001881 AGAATACGATGAGTTGACTTACATCT 57.998 34.615 0.00 0.00 37.54 2.90
1719 1764 8.132362 AGAATACGATGAGTTGACTTACATCTC 58.868 37.037 0.00 0.00 42.43 2.75
1800 1845 6.832900 TGATGATATCCTAACAAATGCCAACA 59.167 34.615 0.00 0.00 0.00 3.33
2379 2441 6.699895 ATAGTTTGTATGTGTACACGTGTG 57.300 37.500 30.83 0.53 40.40 3.82
2600 2756 4.021632 GCAGGAGGCTCATTTTCTTTTCTT 60.022 41.667 17.69 0.00 40.25 2.52
2681 2837 5.657302 GGATCTGGTCTAGTTCCTTAGTTGA 59.343 44.000 6.15 0.00 40.63 3.18
2803 2960 7.576236 ACAGATGAAAAATAGAGTGTTTCACG 58.424 34.615 0.51 0.00 42.36 4.35
2854 3011 1.678101 GCACAAACATCCTCTATGCCC 59.322 52.381 0.00 0.00 39.39 5.36
2855 3012 1.942657 CACAAACATCCTCTATGCCCG 59.057 52.381 0.00 0.00 39.39 6.13
3055 3212 2.235155 TGGATAGCTAACTTCCACGCAA 59.765 45.455 10.01 0.00 34.65 4.85
3116 3281 2.838637 AGATCTCTCCTTCCGGACTT 57.161 50.000 1.83 0.00 34.92 3.01
3361 3536 3.138304 TGCTACACAACTGTTGGACATC 58.862 45.455 23.15 10.46 34.12 3.06
3379 3554 2.452600 TCTCACCTTTTTGTTGGCCT 57.547 45.000 3.32 0.00 0.00 5.19
3380 3555 2.745968 TCTCACCTTTTTGTTGGCCTT 58.254 42.857 3.32 0.00 0.00 4.35
3381 3556 3.103742 TCTCACCTTTTTGTTGGCCTTT 58.896 40.909 3.32 0.00 0.00 3.11
3382 3557 3.517500 TCTCACCTTTTTGTTGGCCTTTT 59.482 39.130 3.32 0.00 0.00 2.27
3463 3642 2.017049 GGCACACTCTTGTCACAAAGT 58.983 47.619 0.00 0.00 31.66 2.66
3555 3734 2.275134 TCCTTCTGCAGCATTCACAA 57.725 45.000 9.47 0.00 0.00 3.33
3719 3899 8.207545 ACAGAAAAATTGGCTAGACCTCTATAG 58.792 37.037 0.00 0.00 40.22 1.31
3762 3945 1.808945 GTTCCATGTCTGCTGTCAAGG 59.191 52.381 5.90 5.90 0.00 3.61
3777 3960 1.093159 CAAGGATGCTTCTGACAGCC 58.907 55.000 0.00 2.72 44.04 4.85
3830 4013 7.869429 GGTTTATGCTTGCATCTGCTTATTTAT 59.131 33.333 11.64 0.00 42.66 1.40
3831 4014 9.252962 GTTTATGCTTGCATCTGCTTATTTATT 57.747 29.630 11.64 0.00 42.66 1.40
4416 4599 0.675083 CTCAAGCAACATGGCCAACA 59.325 50.000 10.96 0.00 0.00 3.33
4672 4855 4.278419 GTGGACTGCCTGTTGAATAAAAGT 59.722 41.667 0.00 0.00 34.31 2.66
4703 4886 9.507329 AACTTGAGAATAAGCATTTAACTCAGA 57.493 29.630 0.00 0.00 37.46 3.27
4733 4916 1.971695 GTGGAAGCCCCGTTTGGAG 60.972 63.158 0.00 0.00 37.49 3.86
4751 4934 2.948720 GCGCCAGAGTTCTGAGGGT 61.949 63.158 10.64 0.00 46.59 4.34
4757 4940 3.165875 CCAGAGTTCTGAGGGTCACTTA 58.834 50.000 10.64 0.00 46.59 2.24
4771 4954 4.961511 GGTCACTTACCGAATTTAAACCG 58.038 43.478 0.00 0.00 38.88 4.44
4772 4955 4.690280 GGTCACTTACCGAATTTAAACCGA 59.310 41.667 11.90 0.00 38.88 4.69
4773 4956 5.163923 GGTCACTTACCGAATTTAAACCGAG 60.164 44.000 11.90 5.77 38.88 4.63
4774 4957 5.634859 GTCACTTACCGAATTTAAACCGAGA 59.365 40.000 11.90 0.00 0.00 4.04
4775 4958 5.865552 TCACTTACCGAATTTAAACCGAGAG 59.134 40.000 11.90 9.11 0.00 3.20
4776 4959 4.628766 ACTTACCGAATTTAAACCGAGAGC 59.371 41.667 11.90 0.00 0.00 4.09
4777 4960 3.048337 ACCGAATTTAAACCGAGAGCA 57.952 42.857 11.90 0.00 0.00 4.26
4778 4961 3.000727 ACCGAATTTAAACCGAGAGCAG 58.999 45.455 11.90 0.00 0.00 4.24
4779 4962 3.000727 CCGAATTTAAACCGAGAGCAGT 58.999 45.455 11.90 0.00 0.00 4.40
4780 4963 3.181520 CCGAATTTAAACCGAGAGCAGTG 60.182 47.826 11.90 0.00 0.00 3.66
4781 4964 3.725010 CGAATTTAAACCGAGAGCAGTGC 60.725 47.826 7.13 7.13 0.00 4.40
4782 4965 2.543777 TTTAAACCGAGAGCAGTGCT 57.456 45.000 19.86 19.86 43.88 4.40
4783 4966 3.671008 TTTAAACCGAGAGCAGTGCTA 57.329 42.857 19.77 0.00 39.88 3.49
4784 4967 3.887621 TTAAACCGAGAGCAGTGCTAT 57.112 42.857 19.77 16.44 39.88 2.97
4785 4968 2.015736 AAACCGAGAGCAGTGCTATG 57.984 50.000 18.69 10.26 39.88 2.23
4786 4969 0.176680 AACCGAGAGCAGTGCTATGG 59.823 55.000 18.69 20.69 39.88 2.74
4787 4970 1.068753 CCGAGAGCAGTGCTATGGG 59.931 63.158 23.78 23.78 39.14 4.00
4788 4971 1.068753 CGAGAGCAGTGCTATGGGG 59.931 63.158 18.69 2.23 39.88 4.96
4789 4972 1.395045 CGAGAGCAGTGCTATGGGGA 61.395 60.000 18.69 0.00 39.88 4.81
4790 4973 0.105778 GAGAGCAGTGCTATGGGGAC 59.894 60.000 18.69 3.03 39.88 4.46
4791 4974 1.227380 GAGCAGTGCTATGGGGACG 60.227 63.158 19.77 0.00 39.88 4.79
4792 4975 1.676678 GAGCAGTGCTATGGGGACGA 61.677 60.000 19.77 0.00 39.88 4.20
4793 4976 1.050988 AGCAGTGCTATGGGGACGAT 61.051 55.000 18.11 0.00 41.32 3.73
4794 4977 0.679505 GCAGTGCTATGGGGACGATA 59.320 55.000 8.18 0.00 41.32 2.92
4795 4978 1.070134 GCAGTGCTATGGGGACGATAA 59.930 52.381 8.18 0.00 41.32 1.75
4796 4979 2.484770 GCAGTGCTATGGGGACGATAAA 60.485 50.000 8.18 0.00 41.32 1.40
4797 4980 3.393800 CAGTGCTATGGGGACGATAAAG 58.606 50.000 0.00 0.00 41.32 1.85
4798 4981 3.039011 AGTGCTATGGGGACGATAAAGT 58.961 45.455 0.00 0.00 41.32 2.66
4799 4982 3.454812 AGTGCTATGGGGACGATAAAGTT 59.545 43.478 0.00 0.00 41.32 2.66
4800 4983 4.080526 AGTGCTATGGGGACGATAAAGTTT 60.081 41.667 0.00 0.00 41.32 2.66
4801 4984 4.035208 GTGCTATGGGGACGATAAAGTTTG 59.965 45.833 0.00 0.00 0.00 2.93
4802 4985 3.564225 GCTATGGGGACGATAAAGTTTGG 59.436 47.826 0.00 0.00 0.00 3.28
4803 4986 4.685030 GCTATGGGGACGATAAAGTTTGGA 60.685 45.833 0.00 0.00 0.00 3.53
4804 4987 3.062122 TGGGGACGATAAAGTTTGGAC 57.938 47.619 0.00 0.00 0.00 4.02
4805 4988 2.004733 GGGGACGATAAAGTTTGGACG 58.995 52.381 0.00 4.14 0.00 4.79
4806 4989 2.354003 GGGGACGATAAAGTTTGGACGA 60.354 50.000 14.33 0.00 0.00 4.20
4807 4990 2.669924 GGGACGATAAAGTTTGGACGAC 59.330 50.000 14.33 9.77 0.00 4.34
4808 4991 3.582780 GGACGATAAAGTTTGGACGACT 58.417 45.455 14.33 0.00 0.00 4.18
4809 4992 3.992427 GGACGATAAAGTTTGGACGACTT 59.008 43.478 14.33 0.00 38.92 3.01
4810 4993 4.143179 GGACGATAAAGTTTGGACGACTTG 60.143 45.833 14.33 0.00 37.41 3.16
4811 4994 4.374399 ACGATAAAGTTTGGACGACTTGT 58.626 39.130 14.33 0.00 37.41 3.16
4812 4995 4.210537 ACGATAAAGTTTGGACGACTTGTG 59.789 41.667 14.33 0.00 37.41 3.33
4813 4996 2.844122 AAAGTTTGGACGACTTGTGC 57.156 45.000 0.00 0.00 37.41 4.57
4817 5000 2.809010 TGGACGACTTGTGCACGA 59.191 55.556 13.13 9.87 44.74 4.35
4818 5001 1.365999 TGGACGACTTGTGCACGAT 59.634 52.632 13.13 0.00 44.74 3.73
4819 5002 0.943835 TGGACGACTTGTGCACGATG 60.944 55.000 13.13 7.17 44.74 3.84
4820 5003 1.626654 GGACGACTTGTGCACGATGG 61.627 60.000 13.13 1.78 39.04 3.51
4821 5004 0.944311 GACGACTTGTGCACGATGGT 60.944 55.000 13.13 5.45 0.00 3.55
4822 5005 0.531974 ACGACTTGTGCACGATGGTT 60.532 50.000 13.13 0.00 0.00 3.67
4823 5006 1.269883 ACGACTTGTGCACGATGGTTA 60.270 47.619 13.13 0.00 0.00 2.85
4824 5007 1.795872 CGACTTGTGCACGATGGTTAA 59.204 47.619 13.13 0.00 0.00 2.01
4825 5008 2.222213 CGACTTGTGCACGATGGTTAAA 59.778 45.455 13.13 0.00 0.00 1.52
4826 5009 3.120338 CGACTTGTGCACGATGGTTAAAT 60.120 43.478 13.13 0.00 0.00 1.40
4827 5010 4.403453 GACTTGTGCACGATGGTTAAATC 58.597 43.478 13.13 0.00 0.00 2.17
4828 5011 3.190535 ACTTGTGCACGATGGTTAAATCC 59.809 43.478 13.13 0.00 0.00 3.01
4829 5012 2.784347 TGTGCACGATGGTTAAATCCA 58.216 42.857 13.13 0.00 42.01 3.41
4830 5013 2.746904 TGTGCACGATGGTTAAATCCAG 59.253 45.455 13.13 0.00 41.05 3.86
4831 5014 1.742831 TGCACGATGGTTAAATCCAGC 59.257 47.619 0.00 0.00 41.05 4.85
4832 5015 1.065551 GCACGATGGTTAAATCCAGCC 59.934 52.381 0.00 0.00 40.33 4.85
4833 5016 1.330521 CACGATGGTTAAATCCAGCCG 59.669 52.381 0.00 7.62 40.33 5.52
4834 5017 1.208535 ACGATGGTTAAATCCAGCCGA 59.791 47.619 13.14 0.00 40.33 5.54
4835 5018 2.285083 CGATGGTTAAATCCAGCCGAA 58.715 47.619 0.00 0.00 40.33 4.30
4836 5019 2.287915 CGATGGTTAAATCCAGCCGAAG 59.712 50.000 0.00 0.00 40.33 3.79
4837 5020 3.541632 GATGGTTAAATCCAGCCGAAGA 58.458 45.455 0.00 0.00 41.05 2.87
4838 5021 3.426787 TGGTTAAATCCAGCCGAAGAA 57.573 42.857 0.00 0.00 33.19 2.52
4839 5022 3.963129 TGGTTAAATCCAGCCGAAGAAT 58.037 40.909 0.00 0.00 33.19 2.40
4840 5023 3.694072 TGGTTAAATCCAGCCGAAGAATG 59.306 43.478 0.00 0.00 33.19 2.67
4841 5024 3.694566 GGTTAAATCCAGCCGAAGAATGT 59.305 43.478 0.00 0.00 0.00 2.71
4842 5025 4.201920 GGTTAAATCCAGCCGAAGAATGTC 60.202 45.833 0.00 0.00 0.00 3.06
4843 5026 1.656652 AATCCAGCCGAAGAATGTCG 58.343 50.000 0.00 0.00 40.77 4.35
4844 5027 0.824109 ATCCAGCCGAAGAATGTCGA 59.176 50.000 0.00 0.00 43.86 4.20
4845 5028 0.173481 TCCAGCCGAAGAATGTCGAG 59.827 55.000 0.00 0.00 43.86 4.04
4846 5029 1.424493 CCAGCCGAAGAATGTCGAGC 61.424 60.000 0.00 0.00 43.86 5.03
4847 5030 0.737367 CAGCCGAAGAATGTCGAGCA 60.737 55.000 9.54 0.00 43.86 4.26
4848 5031 0.737715 AGCCGAAGAATGTCGAGCAC 60.738 55.000 9.54 0.00 43.86 4.40
4849 5032 1.014044 GCCGAAGAATGTCGAGCACA 61.014 55.000 0.00 0.00 43.86 4.57
4850 5033 0.994995 CCGAAGAATGTCGAGCACAG 59.005 55.000 0.00 0.00 43.86 3.66
4851 5034 0.368227 CGAAGAATGTCGAGCACAGC 59.632 55.000 0.00 0.00 43.86 4.40
4852 5035 0.723981 GAAGAATGTCGAGCACAGCC 59.276 55.000 0.00 0.00 38.85 4.85
4853 5036 0.674895 AAGAATGTCGAGCACAGCCC 60.675 55.000 0.00 0.00 38.85 5.19
4854 5037 1.375908 GAATGTCGAGCACAGCCCA 60.376 57.895 0.00 0.00 38.85 5.36
4855 5038 1.364626 GAATGTCGAGCACAGCCCAG 61.365 60.000 0.00 0.00 38.85 4.45
4856 5039 3.965539 ATGTCGAGCACAGCCCAGC 62.966 63.158 0.00 0.00 38.85 4.85
4857 5040 4.687215 GTCGAGCACAGCCCAGCA 62.687 66.667 0.00 0.00 0.00 4.41
4858 5041 4.383861 TCGAGCACAGCCCAGCAG 62.384 66.667 0.00 0.00 0.00 4.24
4859 5042 4.694233 CGAGCACAGCCCAGCAGT 62.694 66.667 0.00 0.00 0.00 4.40
4860 5043 3.054503 GAGCACAGCCCAGCAGTG 61.055 66.667 7.65 7.65 46.31 3.66
4861 5044 4.655647 AGCACAGCCCAGCAGTGG 62.656 66.667 13.04 0.00 44.30 4.00
4871 5054 4.479993 AGCAGTGGCCGCTGGATC 62.480 66.667 39.76 26.53 42.56 3.36
4873 5056 4.864334 CAGTGGCCGCTGGATCCC 62.864 72.222 34.42 0.00 33.11 3.85
4875 5058 4.554036 GTGGCCGCTGGATCCCTC 62.554 72.222 9.68 0.00 0.00 4.30
4878 5061 3.620785 GCCGCTGGATCCCTCGAT 61.621 66.667 20.26 0.00 0.00 3.59
4879 5062 2.653702 CCGCTGGATCCCTCGATC 59.346 66.667 20.26 0.00 43.73 3.69
4880 5063 2.256764 CGCTGGATCCCTCGATCG 59.743 66.667 9.36 9.36 45.16 3.69
4881 5064 2.556459 CGCTGGATCCCTCGATCGT 61.556 63.158 15.94 0.00 45.16 3.73
4882 5065 1.006805 GCTGGATCCCTCGATCGTG 60.007 63.158 15.94 12.87 45.16 4.35
4883 5066 1.006805 CTGGATCCCTCGATCGTGC 60.007 63.158 15.94 0.70 45.16 5.34
4884 5067 1.738346 CTGGATCCCTCGATCGTGCA 61.738 60.000 15.94 5.85 45.16 4.57
4885 5068 1.006805 GGATCCCTCGATCGTGCAG 60.007 63.158 15.94 5.10 45.16 4.41
4886 5069 1.736586 GATCCCTCGATCGTGCAGT 59.263 57.895 15.94 0.00 35.83 4.40
4887 5070 0.103208 GATCCCTCGATCGTGCAGTT 59.897 55.000 15.94 2.24 35.83 3.16
4888 5071 1.337071 GATCCCTCGATCGTGCAGTTA 59.663 52.381 15.94 0.00 35.83 2.24
4889 5072 1.399714 TCCCTCGATCGTGCAGTTAT 58.600 50.000 15.94 0.00 0.00 1.89
4890 5073 1.337071 TCCCTCGATCGTGCAGTTATC 59.663 52.381 15.94 0.00 0.00 1.75
4891 5074 1.067060 CCCTCGATCGTGCAGTTATCA 59.933 52.381 15.94 0.00 0.00 2.15
4892 5075 2.288457 CCCTCGATCGTGCAGTTATCAT 60.288 50.000 15.94 0.00 0.00 2.45
4893 5076 2.983136 CCTCGATCGTGCAGTTATCATC 59.017 50.000 15.94 0.00 0.00 2.92
4894 5077 2.983136 CTCGATCGTGCAGTTATCATCC 59.017 50.000 15.94 0.00 0.00 3.51
4895 5078 2.360801 TCGATCGTGCAGTTATCATCCA 59.639 45.455 15.94 0.00 0.00 3.41
4896 5079 3.123050 CGATCGTGCAGTTATCATCCAA 58.877 45.455 7.03 0.00 0.00 3.53
4897 5080 3.555547 CGATCGTGCAGTTATCATCCAAA 59.444 43.478 7.03 0.00 0.00 3.28
4898 5081 4.550831 CGATCGTGCAGTTATCATCCAAAC 60.551 45.833 7.03 0.00 0.00 2.93
4899 5082 3.669536 TCGTGCAGTTATCATCCAAACA 58.330 40.909 0.00 0.00 0.00 2.83
4900 5083 3.435327 TCGTGCAGTTATCATCCAAACAC 59.565 43.478 0.00 0.00 0.00 3.32
4901 5084 3.436704 CGTGCAGTTATCATCCAAACACT 59.563 43.478 0.00 0.00 0.00 3.55
4902 5085 4.669965 CGTGCAGTTATCATCCAAACACTG 60.670 45.833 0.00 0.00 35.71 3.66
4903 5086 4.216257 GTGCAGTTATCATCCAAACACTGT 59.784 41.667 0.00 0.00 35.17 3.55
4904 5087 4.455533 TGCAGTTATCATCCAAACACTGTC 59.544 41.667 0.00 0.00 35.17 3.51
4905 5088 4.436050 GCAGTTATCATCCAAACACTGTCG 60.436 45.833 0.00 0.00 35.17 4.35
4906 5089 4.690748 CAGTTATCATCCAAACACTGTCGT 59.309 41.667 0.00 0.00 0.00 4.34
4907 5090 4.690748 AGTTATCATCCAAACACTGTCGTG 59.309 41.667 0.00 0.00 46.63 4.35
4916 5099 2.676744 CACTGTCGTGTGTGAAGCA 58.323 52.632 0.00 0.00 36.38 3.91
4917 5100 1.220529 CACTGTCGTGTGTGAAGCAT 58.779 50.000 0.00 0.00 36.38 3.79
4918 5101 1.599071 CACTGTCGTGTGTGAAGCATT 59.401 47.619 0.00 0.00 36.38 3.56
4919 5102 2.032054 CACTGTCGTGTGTGAAGCATTT 59.968 45.455 0.00 0.00 36.38 2.32
4920 5103 2.682856 ACTGTCGTGTGTGAAGCATTTT 59.317 40.909 0.00 0.00 0.00 1.82
4921 5104 3.242739 ACTGTCGTGTGTGAAGCATTTTC 60.243 43.478 0.00 0.00 0.00 2.29
4922 5105 2.286125 TGTCGTGTGTGAAGCATTTTCG 60.286 45.455 0.00 0.00 0.00 3.46
4994 5501 0.826062 GCCTATTTGCTGCCATGGTT 59.174 50.000 14.67 0.00 0.00 3.67
5006 5513 2.423185 TGCCATGGTTGTTCGATTCATC 59.577 45.455 14.67 0.00 0.00 2.92
5018 5525 6.380995 TGTTCGATTCATCCAAGAACAATTG 58.619 36.000 3.24 3.24 45.24 2.32
5054 5561 8.674607 GGTTCCCTAACATGTGTAGAAATAAAG 58.325 37.037 0.00 0.00 37.34 1.85
5056 5563 7.343357 TCCCTAACATGTGTAGAAATAAAGGG 58.657 38.462 0.00 3.79 40.15 3.95
5082 5589 4.042187 AGAGACTTGGACATTTTGGTAGCT 59.958 41.667 0.00 0.00 0.00 3.32
5083 5590 4.729868 AGACTTGGACATTTTGGTAGCTT 58.270 39.130 0.00 0.00 0.00 3.74
5084 5591 5.876357 AGACTTGGACATTTTGGTAGCTTA 58.124 37.500 0.00 0.00 0.00 3.09
5180 5721 2.737376 GACGGCTCGGACCAACAC 60.737 66.667 0.00 0.00 0.00 3.32
5184 5725 3.041940 GCTCGGACCAACACACGG 61.042 66.667 0.00 0.00 0.00 4.94
5189 5730 2.978010 GACCAACACACGGCCAGG 60.978 66.667 2.24 0.00 0.00 4.45
5213 5754 4.379174 GCTTCTCTTGCGGTTGGA 57.621 55.556 0.00 0.00 0.00 3.53
5216 5757 2.356135 GCTTCTCTTGCGGTTGGAATA 58.644 47.619 0.00 0.00 0.00 1.75
5226 5767 3.317711 TGCGGTTGGAATAAATATGGCAG 59.682 43.478 0.00 0.00 0.00 4.85
5230 5771 5.140454 GGTTGGAATAAATATGGCAGAGGT 58.860 41.667 0.00 0.00 0.00 3.85
5235 5776 5.049405 GGAATAAATATGGCAGAGGTGTTCG 60.049 44.000 0.00 0.00 0.00 3.95
5236 5777 1.668419 AATATGGCAGAGGTGTTCGC 58.332 50.000 0.00 0.00 0.00 4.70
5237 5778 0.541392 ATATGGCAGAGGTGTTCGCA 59.459 50.000 0.00 0.00 0.00 5.10
5238 5779 0.323302 TATGGCAGAGGTGTTCGCAA 59.677 50.000 0.00 0.00 0.00 4.85
5264 5809 6.262273 GGAGTCTGGATTCTCACTAGTTCTAG 59.738 46.154 0.00 5.43 32.93 2.43
5268 5813 5.273208 TGGATTCTCACTAGTTCTAGGCTT 58.727 41.667 10.93 0.00 0.00 4.35
5269 5814 5.127845 TGGATTCTCACTAGTTCTAGGCTTG 59.872 44.000 10.93 0.00 0.00 4.01
5270 5815 5.452636 GGATTCTCACTAGTTCTAGGCTTGG 60.453 48.000 10.93 0.00 0.00 3.61
5272 5817 4.873010 TCTCACTAGTTCTAGGCTTGGAT 58.127 43.478 10.93 0.00 0.00 3.41
5273 5818 4.890581 TCTCACTAGTTCTAGGCTTGGATC 59.109 45.833 10.93 0.00 0.00 3.36
5274 5819 4.873010 TCACTAGTTCTAGGCTTGGATCT 58.127 43.478 10.93 0.00 0.00 2.75
5275 5820 5.273208 TCACTAGTTCTAGGCTTGGATCTT 58.727 41.667 10.93 0.00 0.00 2.40
5276 5821 5.721960 TCACTAGTTCTAGGCTTGGATCTTT 59.278 40.000 10.93 0.00 0.00 2.52
5277 5822 6.895756 TCACTAGTTCTAGGCTTGGATCTTTA 59.104 38.462 10.93 0.00 0.00 1.85
5278 5823 7.399191 TCACTAGTTCTAGGCTTGGATCTTTAA 59.601 37.037 10.93 0.00 0.00 1.52
5279 5824 8.207545 CACTAGTTCTAGGCTTGGATCTTTAAT 58.792 37.037 10.93 0.00 0.00 1.40
5280 5825 8.425703 ACTAGTTCTAGGCTTGGATCTTTAATC 58.574 37.037 10.93 0.00 0.00 1.75
5281 5826 6.596621 AGTTCTAGGCTTGGATCTTTAATCC 58.403 40.000 0.00 0.00 38.66 3.01
5282 5827 6.158695 AGTTCTAGGCTTGGATCTTTAATCCA 59.841 38.462 2.63 2.63 45.71 3.41
5283 5828 5.930135 TCTAGGCTTGGATCTTTAATCCAC 58.070 41.667 6.26 0.00 46.90 4.02
5284 5829 4.870021 AGGCTTGGATCTTTAATCCACT 57.130 40.909 6.26 0.00 46.90 4.00
5285 5830 5.198602 AGGCTTGGATCTTTAATCCACTT 57.801 39.130 6.26 0.00 46.90 3.16
5286 5831 5.583932 AGGCTTGGATCTTTAATCCACTTT 58.416 37.500 6.26 0.00 46.90 2.66
5287 5832 5.420104 AGGCTTGGATCTTTAATCCACTTTG 59.580 40.000 6.26 0.23 46.90 2.77
5288 5833 5.185828 GGCTTGGATCTTTAATCCACTTTGT 59.814 40.000 6.26 0.00 46.90 2.83
5289 5834 6.377146 GGCTTGGATCTTTAATCCACTTTGTA 59.623 38.462 6.26 0.00 46.90 2.41
5290 5835 7.068716 GGCTTGGATCTTTAATCCACTTTGTAT 59.931 37.037 6.26 0.00 46.90 2.29
5291 5836 7.917505 GCTTGGATCTTTAATCCACTTTGTATG 59.082 37.037 6.26 0.00 46.90 2.39
5292 5837 7.333528 TGGATCTTTAATCCACTTTGTATGC 57.666 36.000 2.63 0.00 42.81 3.14
5293 5838 7.118723 TGGATCTTTAATCCACTTTGTATGCT 58.881 34.615 2.63 0.00 42.81 3.79
5294 5839 7.615365 TGGATCTTTAATCCACTTTGTATGCTT 59.385 33.333 2.63 0.00 42.81 3.91
5295 5840 8.131731 GGATCTTTAATCCACTTTGTATGCTTC 58.868 37.037 0.00 0.00 38.09 3.86
5296 5841 8.814038 ATCTTTAATCCACTTTGTATGCTTCT 57.186 30.769 0.00 0.00 0.00 2.85
5297 5842 9.905713 ATCTTTAATCCACTTTGTATGCTTCTA 57.094 29.630 0.00 0.00 0.00 2.10
5298 5843 9.162764 TCTTTAATCCACTTTGTATGCTTCTAC 57.837 33.333 0.00 0.00 0.00 2.59
5299 5844 8.856153 TTTAATCCACTTTGTATGCTTCTACA 57.144 30.769 0.00 0.00 0.00 2.74
5300 5845 8.856153 TTAATCCACTTTGTATGCTTCTACAA 57.144 30.769 3.86 3.86 39.27 2.41
5301 5846 6.992063 ATCCACTTTGTATGCTTCTACAAG 57.008 37.500 7.02 5.46 41.32 3.16
5302 5847 5.865085 TCCACTTTGTATGCTTCTACAAGT 58.135 37.500 7.02 5.88 41.32 3.16
5306 5851 3.627395 TGTATGCTTCTACAAGTGGGG 57.373 47.619 0.00 0.00 31.45 4.96
5309 5854 0.984230 TGCTTCTACAAGTGGGGGAG 59.016 55.000 0.00 0.00 31.45 4.30
5321 5866 1.134189 GTGGGGGAGCCAAGTACATAC 60.134 57.143 0.00 0.00 0.00 2.39
5329 5874 3.879295 GAGCCAAGTACATACACATGCAT 59.121 43.478 0.00 0.00 35.39 3.96
5330 5875 5.034852 AGCCAAGTACATACACATGCATA 57.965 39.130 0.00 0.00 35.39 3.14
5331 5876 4.816385 AGCCAAGTACATACACATGCATAC 59.184 41.667 0.00 0.00 35.39 2.39
5333 5878 5.239306 GCCAAGTACATACACATGCATACAT 59.761 40.000 0.00 0.00 35.39 2.29
5351 5896 3.074504 CATGCAGCAACCATGTATCAC 57.925 47.619 0.00 0.00 36.26 3.06
5352 5897 2.197283 TGCAGCAACCATGTATCACA 57.803 45.000 0.00 0.00 0.00 3.58
5356 5901 3.303329 GCAGCAACCATGTATCACATACG 60.303 47.826 0.00 0.00 36.53 3.06
5383 5928 1.565759 TCATTCCTCCCCACATTCAGG 59.434 52.381 0.00 0.00 0.00 3.86
5390 5935 1.219213 TCCCCACATTCAGGTTTTGGT 59.781 47.619 0.00 0.00 0.00 3.67
5394 5939 2.227865 CCACATTCAGGTTTTGGTACCG 59.772 50.000 7.57 0.00 43.21 4.02
5412 5957 1.202651 CCGATGATTAAAGGTCGCCCT 60.203 52.381 0.00 0.00 45.63 5.19
5413 5958 1.867233 CGATGATTAAAGGTCGCCCTG 59.133 52.381 0.00 0.00 41.56 4.45
5416 5961 1.339631 TGATTAAAGGTCGCCCTGTGG 60.340 52.381 0.00 0.00 41.56 4.17
5418 5963 0.035739 TTAAAGGTCGCCCTGTGGAC 59.964 55.000 0.00 0.00 41.56 4.02
5446 5992 2.420466 GCGTCTCCGGTAATCCCC 59.580 66.667 0.00 0.00 33.68 4.81
5450 5996 1.478288 CGTCTCCGGTAATCCCCTACT 60.478 57.143 0.00 0.00 0.00 2.57
5451 5997 1.962100 GTCTCCGGTAATCCCCTACTG 59.038 57.143 0.00 0.00 0.00 2.74
5473 6019 1.690985 GGTCAGGGAAGGAGGGAGG 60.691 68.421 0.00 0.00 0.00 4.30
5482 6028 2.091222 GGAAGGAGGGAGGTAGCTTCTA 60.091 54.545 0.00 0.00 0.00 2.10
5489 6035 2.036604 GGGAGGTAGCTTCTATCACTGC 59.963 54.545 0.00 0.00 0.00 4.40
5514 6060 1.586154 CTCCGCAAACCCACCATCAC 61.586 60.000 0.00 0.00 0.00 3.06
5519 6065 0.322098 CAAACCCACCATCACGCCTA 60.322 55.000 0.00 0.00 0.00 3.93
5521 6067 1.502690 AACCCACCATCACGCCTATA 58.497 50.000 0.00 0.00 0.00 1.31
5522 6068 1.729586 ACCCACCATCACGCCTATAT 58.270 50.000 0.00 0.00 0.00 0.86
5523 6069 2.897350 ACCCACCATCACGCCTATATA 58.103 47.619 0.00 0.00 0.00 0.86
5525 6071 3.844211 ACCCACCATCACGCCTATATATT 59.156 43.478 0.00 0.00 0.00 1.28
5526 6072 5.027460 ACCCACCATCACGCCTATATATTA 58.973 41.667 0.00 0.00 0.00 0.98
5527 6073 5.128827 ACCCACCATCACGCCTATATATTAG 59.871 44.000 0.00 0.00 0.00 1.73
5529 6075 6.322969 CCCACCATCACGCCTATATATTAGTA 59.677 42.308 0.00 0.00 0.00 1.82
5531 6077 8.421784 CCACCATCACGCCTATATATTAGTAAT 58.578 37.037 0.17 0.17 0.00 1.89
5539 6085 9.813446 ACGCCTATATATTAGTAATAACCTTGC 57.187 33.333 6.69 6.80 0.00 4.01
5540 6086 8.965172 CGCCTATATATTAGTAATAACCTTGCG 58.035 37.037 17.31 17.31 0.00 4.85
5541 6087 9.813446 GCCTATATATTAGTAATAACCTTGCGT 57.187 33.333 6.69 0.00 0.00 5.24
5561 6107 4.549458 CGTTCATGAAGGCAAATTTGAGT 58.451 39.130 22.31 4.64 0.00 3.41
5563 6109 4.524316 TCATGAAGGCAAATTTGAGTGG 57.476 40.909 22.31 4.17 0.00 4.00
5564 6110 3.896888 TCATGAAGGCAAATTTGAGTGGT 59.103 39.130 22.31 1.42 0.00 4.16
5620 6166 4.419522 AAACATACAACGAGGATGCAAC 57.580 40.909 0.00 0.00 0.00 4.17
5624 6170 1.167851 ACAACGAGGATGCAACATGG 58.832 50.000 0.00 0.00 0.00 3.66
5647 6193 6.943146 TGGCATTCAACACCTAAACATACTAA 59.057 34.615 0.00 0.00 0.00 2.24
5678 6224 4.384868 CCATATCCGTGAAAACTAAGGGGT 60.385 45.833 0.00 0.00 0.00 4.95
5682 6228 3.903090 TCCGTGAAAACTAAGGGGTCTAA 59.097 43.478 0.00 0.00 0.00 2.10
5683 6229 4.533311 TCCGTGAAAACTAAGGGGTCTAAT 59.467 41.667 0.00 0.00 0.00 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.220749 GGGCTTGTATGAGCGGTCA 59.779 57.895 21.02 21.02 43.62 4.02
15 16 0.911769 CAGGATGTGAGGGGCTTGTA 59.088 55.000 0.00 0.00 0.00 2.41
16 17 1.687612 CAGGATGTGAGGGGCTTGT 59.312 57.895 0.00 0.00 0.00 3.16
46 47 3.133362 ACTGAAACAAGACCCTTGTCGTA 59.867 43.478 12.10 2.46 46.51 3.43
47 48 2.093128 ACTGAAACAAGACCCTTGTCGT 60.093 45.455 12.10 4.65 46.51 4.34
48 49 2.561569 ACTGAAACAAGACCCTTGTCG 58.438 47.619 12.10 5.28 46.51 4.35
69 71 8.267183 TGATCTAGTCCTCTATTGCAAAAATCA 58.733 33.333 1.71 0.00 0.00 2.57
105 107 8.316214 AGCTATGTTTTCATCACCAAATCATTT 58.684 29.630 0.00 0.00 41.25 2.32
106 108 7.844009 AGCTATGTTTTCATCACCAAATCATT 58.156 30.769 0.00 0.00 41.25 2.57
107 109 7.414222 AGCTATGTTTTCATCACCAAATCAT 57.586 32.000 0.00 0.00 41.25 2.45
111 113 5.000591 TCGAGCTATGTTTTCATCACCAAA 58.999 37.500 0.00 0.00 41.25 3.28
113 115 4.183865 CTCGAGCTATGTTTTCATCACCA 58.816 43.478 0.00 0.00 41.25 4.17
118 120 5.812642 CCTGTAACTCGAGCTATGTTTTCAT 59.187 40.000 13.61 0.00 43.60 2.57
133 135 1.725164 CTTCGGCGTTTCCTGTAACTC 59.275 52.381 6.85 0.00 0.00 3.01
138 140 1.004918 CTCCTTCGGCGTTTCCTGT 60.005 57.895 6.85 0.00 0.00 4.00
148 150 4.241555 CATCGGGGGCTCCTTCGG 62.242 72.222 0.52 0.00 0.00 4.30
180 182 1.069022 CCTTGTGTTGCAATGTCCGAG 60.069 52.381 0.59 0.46 36.36 4.63
224 226 3.152341 CTCCTTCAGTGTTTCCTGCAAT 58.848 45.455 0.00 0.00 32.32 3.56
251 253 2.732658 GTGACGACCTCCCACGTT 59.267 61.111 0.00 0.00 42.74 3.99
272 274 2.433838 CAGCTCCACTCCAGCACG 60.434 66.667 0.00 0.00 39.56 5.34
293 295 1.123861 ACCTCAGTCCTGCAAGCAGA 61.124 55.000 22.76 6.84 46.30 4.26
302 304 1.850345 CTCCTCCTCTACCTCAGTCCT 59.150 57.143 0.00 0.00 0.00 3.85
305 307 2.173996 GCTACTCCTCCTCTACCTCAGT 59.826 54.545 0.00 0.00 0.00 3.41
347 349 1.817099 GAGCGTCTTGGGCATGGAG 60.817 63.158 0.00 0.00 0.00 3.86
400 425 2.029964 GGTCCGCCGAGACAACAA 59.970 61.111 7.77 0.00 38.59 2.83
457 482 3.433306 ACCTTTGCAACAGCTACCATA 57.567 42.857 0.00 0.00 0.00 2.74
459 484 1.953686 GAACCTTTGCAACAGCTACCA 59.046 47.619 0.00 0.00 0.00 3.25
478 503 2.583441 CCGACCCAGCCAGTTGAGA 61.583 63.158 0.00 0.00 0.00 3.27
484 509 1.144936 GATCTTCCGACCCAGCCAG 59.855 63.158 0.00 0.00 0.00 4.85
495 520 5.062809 GTCTGAAACAATCGTCTGATCTTCC 59.937 44.000 0.00 0.00 32.24 3.46
509 534 4.156922 ACCGTCAAATGTTGTCTGAAACAA 59.843 37.500 8.65 0.00 45.60 2.83
516 541 1.336755 GGCAACCGTCAAATGTTGTCT 59.663 47.619 0.00 0.00 42.33 3.41
545 570 5.279006 GCCGGATGATAACTCAACTAGATCA 60.279 44.000 5.05 0.00 34.37 2.92
548 573 3.004419 CGCCGGATGATAACTCAACTAGA 59.996 47.826 5.05 0.00 34.37 2.43
549 574 3.309388 CGCCGGATGATAACTCAACTAG 58.691 50.000 5.05 0.00 34.37 2.57
568 593 3.186047 ACAATGCTACGCGTCCGC 61.186 61.111 18.63 20.84 38.22 5.54
575 600 0.881118 AACAAGGGCACAATGCTACG 59.119 50.000 0.13 0.00 44.28 3.51
609 634 4.268359 AGAAGCAATGAACCAATCTCTCC 58.732 43.478 0.00 0.00 0.00 3.71
611 636 6.008960 AGAAAGAAGCAATGAACCAATCTCT 58.991 36.000 0.00 0.00 0.00 3.10
612 637 6.264841 AGAAAGAAGCAATGAACCAATCTC 57.735 37.500 0.00 0.00 0.00 2.75
639 664 5.350504 TGAACCAATTTTCTTGCCTCAAA 57.649 34.783 0.00 0.00 0.00 2.69
640 665 5.549742 ATGAACCAATTTTCTTGCCTCAA 57.450 34.783 0.00 0.00 0.00 3.02
642 667 4.152938 GCAATGAACCAATTTTCTTGCCTC 59.847 41.667 11.77 0.00 35.65 4.70
652 677 4.096382 GGTGATCGTAGCAATGAACCAATT 59.904 41.667 0.00 0.00 0.00 2.32
670 695 5.332743 TCATTGCTTTTTCTTAGGGGTGAT 58.667 37.500 0.00 0.00 0.00 3.06
672 697 5.230182 GTTCATTGCTTTTTCTTAGGGGTG 58.770 41.667 0.00 0.00 0.00 4.61
675 700 5.467035 TGGTTCATTGCTTTTTCTTAGGG 57.533 39.130 0.00 0.00 0.00 3.53
677 702 9.654417 CAAAATTGGTTCATTGCTTTTTCTTAG 57.346 29.630 0.00 0.00 0.00 2.18
678 703 9.171877 ACAAAATTGGTTCATTGCTTTTTCTTA 57.828 25.926 0.00 0.00 0.00 2.10
679 704 8.054152 ACAAAATTGGTTCATTGCTTTTTCTT 57.946 26.923 0.00 0.00 0.00 2.52
680 705 7.628769 ACAAAATTGGTTCATTGCTTTTTCT 57.371 28.000 0.00 0.00 0.00 2.52
683 708 6.541641 TGCTACAAAATTGGTTCATTGCTTTT 59.458 30.769 0.00 0.00 0.00 2.27
684 709 6.054295 TGCTACAAAATTGGTTCATTGCTTT 58.946 32.000 0.00 0.00 0.00 3.51
685 710 5.609423 TGCTACAAAATTGGTTCATTGCTT 58.391 33.333 0.00 0.00 0.00 3.91
686 711 5.212532 TGCTACAAAATTGGTTCATTGCT 57.787 34.783 0.00 0.00 0.00 3.91
687 712 5.921004 TTGCTACAAAATTGGTTCATTGC 57.079 34.783 0.00 0.00 0.00 3.56
688 713 7.655236 TCATTGCTACAAAATTGGTTCATTG 57.345 32.000 0.00 0.00 0.00 2.82
689 714 7.173047 GGTTCATTGCTACAAAATTGGTTCATT 59.827 33.333 0.00 0.00 0.00 2.57
690 715 6.650390 GGTTCATTGCTACAAAATTGGTTCAT 59.350 34.615 0.00 0.00 0.00 2.57
691 716 5.988561 GGTTCATTGCTACAAAATTGGTTCA 59.011 36.000 0.00 0.00 0.00 3.18
693 718 5.923204 TGGTTCATTGCTACAAAATTGGTT 58.077 33.333 0.00 0.00 0.00 3.67
694 719 5.543507 TGGTTCATTGCTACAAAATTGGT 57.456 34.783 0.00 0.00 0.00 3.67
696 721 9.171701 CAAAATTGGTTCATTGCTACAAAATTG 57.828 29.630 0.00 0.00 0.00 2.32
698 723 8.449251 ACAAAATTGGTTCATTGCTACAAAAT 57.551 26.923 0.00 0.00 0.00 1.82
699 724 7.856145 ACAAAATTGGTTCATTGCTACAAAA 57.144 28.000 0.00 0.00 0.00 2.44
700 725 8.948631 TTACAAAATTGGTTCATTGCTACAAA 57.051 26.923 0.00 0.00 0.00 2.83
701 726 7.170658 GCTTACAAAATTGGTTCATTGCTACAA 59.829 33.333 0.00 0.00 0.00 2.41
702 727 6.644592 GCTTACAAAATTGGTTCATTGCTACA 59.355 34.615 0.00 0.00 0.00 2.74
703 728 6.868339 AGCTTACAAAATTGGTTCATTGCTAC 59.132 34.615 0.00 0.00 0.00 3.58
704 729 6.991938 AGCTTACAAAATTGGTTCATTGCTA 58.008 32.000 0.00 0.00 0.00 3.49
705 730 5.857268 AGCTTACAAAATTGGTTCATTGCT 58.143 33.333 0.00 0.00 0.00 3.91
706 731 6.365050 CAAGCTTACAAAATTGGTTCATTGC 58.635 36.000 0.00 0.00 0.00 3.56
707 732 6.566376 GCCAAGCTTACAAAATTGGTTCATTG 60.566 38.462 0.00 0.00 43.37 2.82
708 733 5.469760 GCCAAGCTTACAAAATTGGTTCATT 59.530 36.000 0.00 0.00 43.37 2.57
709 734 4.996758 GCCAAGCTTACAAAATTGGTTCAT 59.003 37.500 0.00 0.00 43.37 2.57
710 735 4.376146 GCCAAGCTTACAAAATTGGTTCA 58.624 39.130 0.00 0.00 43.37 3.18
711 736 3.745975 GGCCAAGCTTACAAAATTGGTTC 59.254 43.478 0.00 0.00 43.37 3.62
712 737 3.495983 GGGCCAAGCTTACAAAATTGGTT 60.496 43.478 4.39 0.00 43.37 3.67
713 738 2.038426 GGGCCAAGCTTACAAAATTGGT 59.962 45.455 4.39 0.00 43.37 3.67
714 739 2.038295 TGGGCCAAGCTTACAAAATTGG 59.962 45.455 2.13 0.00 44.12 3.16
722 747 2.267045 CCAACTGGGCCAAGCTTAC 58.733 57.895 7.20 0.00 0.00 2.34
735 760 2.936032 GGCCCAGACCTCCCAACT 60.936 66.667 0.00 0.00 0.00 3.16
846 874 2.279120 GGCGCAGAGGAGATCGTG 60.279 66.667 10.83 0.00 0.00 4.35
866 894 2.600731 CTCCGTCCGATCTGATTATGC 58.399 52.381 0.00 0.00 0.00 3.14
872 900 3.889044 GCGCTCCGTCCGATCTGA 61.889 66.667 0.00 0.00 0.00 3.27
978 1012 0.323629 GTTTGGATCGGTGACTGGGA 59.676 55.000 0.00 0.00 0.00 4.37
1017 1061 1.595382 CGTTGCTGGATCGGGGATC 60.595 63.158 0.00 0.00 38.25 3.36
1050 1094 0.833287 CATCCTCCCACCACGATCTT 59.167 55.000 0.00 0.00 0.00 2.40
1159 1203 3.749064 GCGCCGAGGACAGAGACA 61.749 66.667 0.00 0.00 0.00 3.41
1420 1464 1.473434 GCCAAATCTAGCTACCGCAGT 60.473 52.381 0.00 0.00 39.10 4.40
1553 1598 0.390603 TCTACACAAACATCCGCCGG 60.391 55.000 0.00 0.00 0.00 6.13
1684 1729 6.153851 TCAACTCATCGTATTCTTCCTACCAA 59.846 38.462 0.00 0.00 0.00 3.67
1685 1730 5.655090 TCAACTCATCGTATTCTTCCTACCA 59.345 40.000 0.00 0.00 0.00 3.25
1686 1731 5.978322 GTCAACTCATCGTATTCTTCCTACC 59.022 44.000 0.00 0.00 0.00 3.18
1687 1732 6.797454 AGTCAACTCATCGTATTCTTCCTAC 58.203 40.000 0.00 0.00 0.00 3.18
1688 1733 7.406031 AAGTCAACTCATCGTATTCTTCCTA 57.594 36.000 0.00 0.00 0.00 2.94
1689 1734 5.923733 AGTCAACTCATCGTATTCTTCCT 57.076 39.130 0.00 0.00 0.00 3.36
1690 1735 7.033791 TGTAAGTCAACTCATCGTATTCTTCC 58.966 38.462 0.00 0.00 0.00 3.46
1691 1736 8.635877 ATGTAAGTCAACTCATCGTATTCTTC 57.364 34.615 0.00 0.00 0.00 2.87
1692 1737 8.470805 AGATGTAAGTCAACTCATCGTATTCTT 58.529 33.333 6.32 0.00 40.75 2.52
1693 1738 8.001881 AGATGTAAGTCAACTCATCGTATTCT 57.998 34.615 6.32 0.00 40.75 2.40
1694 1739 8.132362 AGAGATGTAAGTCAACTCATCGTATTC 58.868 37.037 7.59 1.19 44.80 1.75
1695 1740 8.001881 AGAGATGTAAGTCAACTCATCGTATT 57.998 34.615 7.59 0.00 44.80 1.89
1696 1741 7.575414 AGAGATGTAAGTCAACTCATCGTAT 57.425 36.000 7.59 0.00 44.80 3.06
1697 1742 7.251281 CAAGAGATGTAAGTCAACTCATCGTA 58.749 38.462 7.59 0.00 44.80 3.43
1698 1743 5.906113 AGAGATGTAAGTCAACTCATCGT 57.094 39.130 7.59 0.00 44.80 3.73
1699 1744 5.518128 CCAAGAGATGTAAGTCAACTCATCG 59.482 44.000 7.59 0.00 44.80 3.84
1700 1745 6.402222 ACCAAGAGATGTAAGTCAACTCATC 58.598 40.000 7.59 4.47 44.80 2.92
1701 1746 6.365970 ACCAAGAGATGTAAGTCAACTCAT 57.634 37.500 7.59 0.00 44.80 2.90
1702 1747 5.808366 ACCAAGAGATGTAAGTCAACTCA 57.192 39.130 7.59 0.00 44.80 3.41
1703 1748 6.153000 TCCTACCAAGAGATGTAAGTCAACTC 59.847 42.308 0.00 0.00 43.39 3.01
1704 1749 6.017192 TCCTACCAAGAGATGTAAGTCAACT 58.983 40.000 0.00 0.00 31.85 3.16
1705 1750 6.282199 TCCTACCAAGAGATGTAAGTCAAC 57.718 41.667 0.00 0.00 0.00 3.18
1706 1751 6.724441 TCTTCCTACCAAGAGATGTAAGTCAA 59.276 38.462 0.00 0.00 0.00 3.18
1707 1752 6.253758 TCTTCCTACCAAGAGATGTAAGTCA 58.746 40.000 0.00 0.00 0.00 3.41
1708 1753 6.777213 TCTTCCTACCAAGAGATGTAAGTC 57.223 41.667 0.00 0.00 0.00 3.01
1709 1754 7.416890 CGATTCTTCCTACCAAGAGATGTAAGT 60.417 40.741 0.00 0.00 33.85 2.24
1710 1755 6.920758 CGATTCTTCCTACCAAGAGATGTAAG 59.079 42.308 0.00 0.00 33.85 2.34
1711 1756 6.183360 CCGATTCTTCCTACCAAGAGATGTAA 60.183 42.308 0.00 0.00 33.85 2.41
1712 1757 5.302059 CCGATTCTTCCTACCAAGAGATGTA 59.698 44.000 0.00 0.00 33.85 2.29
1713 1758 4.100189 CCGATTCTTCCTACCAAGAGATGT 59.900 45.833 0.00 0.00 33.85 3.06
1714 1759 4.342378 TCCGATTCTTCCTACCAAGAGATG 59.658 45.833 0.00 0.00 33.85 2.90
1715 1760 4.342665 GTCCGATTCTTCCTACCAAGAGAT 59.657 45.833 0.00 0.00 33.85 2.75
1716 1761 3.700038 GTCCGATTCTTCCTACCAAGAGA 59.300 47.826 0.00 0.00 33.85 3.10
1717 1762 3.447586 TGTCCGATTCTTCCTACCAAGAG 59.552 47.826 0.00 0.00 33.85 2.85
1718 1763 3.437213 TGTCCGATTCTTCCTACCAAGA 58.563 45.455 0.00 0.00 0.00 3.02
1719 1764 3.887621 TGTCCGATTCTTCCTACCAAG 57.112 47.619 0.00 0.00 0.00 3.61
2349 2400 9.518906 CGTGTACACATACAAACTATACCATAA 57.481 33.333 24.98 0.00 42.99 1.90
2350 2401 8.685427 ACGTGTACACATACAAACTATACCATA 58.315 33.333 24.98 0.00 42.99 2.74
2351 2402 7.490079 CACGTGTACACATACAAACTATACCAT 59.510 37.037 24.98 0.00 42.99 3.55
2352 2403 6.807720 CACGTGTACACATACAAACTATACCA 59.192 38.462 24.98 0.00 42.99 3.25
2353 2404 6.808212 ACACGTGTACACATACAAACTATACC 59.192 38.462 21.98 0.00 42.99 2.73
2354 2405 7.660059 CACACGTGTACACATACAAACTATAC 58.340 38.462 22.90 0.00 42.99 1.47
2355 2406 6.308524 GCACACGTGTACACATACAAACTATA 59.691 38.462 22.90 0.00 42.99 1.31
2356 2407 5.119588 GCACACGTGTACACATACAAACTAT 59.880 40.000 22.90 0.00 42.99 2.12
2357 2408 4.445052 GCACACGTGTACACATACAAACTA 59.555 41.667 22.90 0.00 42.99 2.24
2358 2409 3.246699 GCACACGTGTACACATACAAACT 59.753 43.478 22.90 0.00 42.99 2.66
2379 2441 2.093553 AGGAGAAGTGAAGCAGATGAGC 60.094 50.000 0.00 0.00 0.00 4.26
2536 2623 5.347635 TCATTGTCACGACTTACATAACAGC 59.652 40.000 0.00 0.00 0.00 4.40
2600 2756 1.757682 ACAGAGGAACCGCAAAACAA 58.242 45.000 0.00 0.00 0.00 2.83
2803 2960 6.589907 CCAATTGTAGATGTAAAGCCAAAACC 59.410 38.462 4.43 0.00 0.00 3.27
2854 3011 4.800993 CACTAACATGCTTCTTCCTCTACG 59.199 45.833 0.00 0.00 0.00 3.51
2855 3012 4.568760 GCACTAACATGCTTCTTCCTCTAC 59.431 45.833 0.00 0.00 42.62 2.59
3116 3281 3.392947 TGGTAGACCAAACTTGACATGGA 59.607 43.478 0.00 0.00 44.35 3.41
3361 3536 3.541996 AAAGGCCAACAAAAAGGTGAG 57.458 42.857 5.01 0.00 36.95 3.51
3379 3554 1.403493 CGCTGTTGTATGCGCAAAAA 58.597 45.000 17.11 6.41 45.50 1.94
3380 3555 3.084686 CGCTGTTGTATGCGCAAAA 57.915 47.368 17.11 6.83 45.50 2.44
3381 3556 4.836892 CGCTGTTGTATGCGCAAA 57.163 50.000 17.11 0.01 45.50 3.68
3555 3734 7.769970 ACAAATGTTTTCACAAGATCCAAATGT 59.230 29.630 0.00 0.00 36.16 2.71
3719 3899 5.652452 ACTTATTTGAGGGGCTCATGTTAAC 59.348 40.000 0.00 0.00 40.39 2.01
3762 3945 1.471684 CCAAAGGCTGTCAGAAGCATC 59.528 52.381 3.32 0.00 45.43 3.91
3777 3960 6.973843 TCAGATGTTTTCACAAGATCCAAAG 58.026 36.000 0.00 0.00 36.16 2.77
4209 4392 7.280356 TCTTGAGCCATGGATCATGATATATG 58.720 38.462 33.09 17.24 43.81 1.78
4416 4599 6.068853 TCCCAGATGGATGGAATTAGACTTTT 60.069 38.462 0.00 0.00 43.57 2.27
4703 4886 2.355818 GGGCTTCCACGAGGACTTAATT 60.356 50.000 0.00 0.00 45.73 1.40
4733 4916 2.125350 CCCTCAGAACTCTGGCGC 60.125 66.667 0.00 0.00 43.91 6.53
4751 4934 5.782047 TCTCGGTTTAAATTCGGTAAGTGA 58.218 37.500 11.95 2.66 0.00 3.41
4757 4940 3.000727 CTGCTCTCGGTTTAAATTCGGT 58.999 45.455 11.95 0.00 0.00 4.69
4763 4946 2.543777 AGCACTGCTCTCGGTTTAAA 57.456 45.000 0.00 0.00 30.62 1.52
4764 4947 3.521560 CATAGCACTGCTCTCGGTTTAA 58.478 45.455 6.86 0.00 40.44 1.52
4765 4948 2.159099 CCATAGCACTGCTCTCGGTTTA 60.159 50.000 6.86 0.00 40.44 2.01
4766 4949 1.406069 CCATAGCACTGCTCTCGGTTT 60.406 52.381 6.86 0.00 40.44 3.27
4767 4950 0.176680 CCATAGCACTGCTCTCGGTT 59.823 55.000 6.86 0.00 40.44 4.44
4768 4951 1.680522 CCCATAGCACTGCTCTCGGT 61.681 60.000 6.86 0.00 40.44 4.69
4769 4952 1.068753 CCCATAGCACTGCTCTCGG 59.931 63.158 6.86 6.57 40.44 4.63
4770 4953 1.068753 CCCCATAGCACTGCTCTCG 59.931 63.158 6.86 0.00 40.44 4.04
4771 4954 0.105778 GTCCCCATAGCACTGCTCTC 59.894 60.000 6.86 0.00 40.44 3.20
4772 4955 1.680522 CGTCCCCATAGCACTGCTCT 61.681 60.000 6.86 0.00 40.44 4.09
4773 4956 1.227380 CGTCCCCATAGCACTGCTC 60.227 63.158 6.86 0.00 40.44 4.26
4774 4957 1.050988 ATCGTCCCCATAGCACTGCT 61.051 55.000 8.95 8.95 43.41 4.24
4775 4958 0.679505 TATCGTCCCCATAGCACTGC 59.320 55.000 0.00 0.00 0.00 4.40
4776 4959 3.181465 ACTTTATCGTCCCCATAGCACTG 60.181 47.826 0.00 0.00 0.00 3.66
4777 4960 3.039011 ACTTTATCGTCCCCATAGCACT 58.961 45.455 0.00 0.00 0.00 4.40
4778 4961 3.470645 ACTTTATCGTCCCCATAGCAC 57.529 47.619 0.00 0.00 0.00 4.40
4779 4962 4.196193 CAAACTTTATCGTCCCCATAGCA 58.804 43.478 0.00 0.00 0.00 3.49
4780 4963 3.564225 CCAAACTTTATCGTCCCCATAGC 59.436 47.826 0.00 0.00 0.00 2.97
4781 4964 4.814771 GTCCAAACTTTATCGTCCCCATAG 59.185 45.833 0.00 0.00 0.00 2.23
4782 4965 4.681244 CGTCCAAACTTTATCGTCCCCATA 60.681 45.833 0.00 0.00 0.00 2.74
4783 4966 3.617284 GTCCAAACTTTATCGTCCCCAT 58.383 45.455 0.00 0.00 0.00 4.00
4784 4967 2.613474 CGTCCAAACTTTATCGTCCCCA 60.613 50.000 0.00 0.00 0.00 4.96
4785 4968 2.004733 CGTCCAAACTTTATCGTCCCC 58.995 52.381 0.00 0.00 0.00 4.81
4786 4969 2.669924 GTCGTCCAAACTTTATCGTCCC 59.330 50.000 0.00 0.00 0.00 4.46
4787 4970 3.582780 AGTCGTCCAAACTTTATCGTCC 58.417 45.455 0.00 0.00 0.00 4.79
4788 4971 4.446719 ACAAGTCGTCCAAACTTTATCGTC 59.553 41.667 0.00 0.00 34.79 4.20
4789 4972 4.210537 CACAAGTCGTCCAAACTTTATCGT 59.789 41.667 0.00 0.00 34.79 3.73
4790 4973 4.698276 CACAAGTCGTCCAAACTTTATCG 58.302 43.478 0.00 0.00 34.79 2.92
4791 4974 4.024387 TGCACAAGTCGTCCAAACTTTATC 60.024 41.667 0.00 0.00 34.79 1.75
4792 4975 3.880490 TGCACAAGTCGTCCAAACTTTAT 59.120 39.130 0.00 0.00 34.79 1.40
4793 4976 3.064271 GTGCACAAGTCGTCCAAACTTTA 59.936 43.478 13.17 0.00 34.79 1.85
4794 4977 2.088423 TGCACAAGTCGTCCAAACTTT 58.912 42.857 0.00 0.00 34.79 2.66
4795 4978 1.400494 GTGCACAAGTCGTCCAAACTT 59.600 47.619 13.17 0.00 37.44 2.66
4796 4979 1.014352 GTGCACAAGTCGTCCAAACT 58.986 50.000 13.17 0.00 0.00 2.66
4797 4980 0.315869 CGTGCACAAGTCGTCCAAAC 60.316 55.000 18.64 0.00 0.00 2.93
4798 4981 0.460459 TCGTGCACAAGTCGTCCAAA 60.460 50.000 18.64 0.00 0.00 3.28
4799 4982 0.249699 ATCGTGCACAAGTCGTCCAA 60.250 50.000 18.64 0.00 0.00 3.53
4800 4983 0.943835 CATCGTGCACAAGTCGTCCA 60.944 55.000 18.64 0.00 0.00 4.02
4801 4984 1.626654 CCATCGTGCACAAGTCGTCC 61.627 60.000 18.64 0.00 0.00 4.79
4802 4985 0.944311 ACCATCGTGCACAAGTCGTC 60.944 55.000 18.64 0.00 0.00 4.20
4803 4986 0.531974 AACCATCGTGCACAAGTCGT 60.532 50.000 18.64 2.65 0.00 4.34
4804 4987 1.424403 TAACCATCGTGCACAAGTCG 58.576 50.000 18.64 1.94 0.00 4.18
4805 4988 3.889196 TTTAACCATCGTGCACAAGTC 57.111 42.857 18.64 0.00 0.00 3.01
4806 4989 3.190535 GGATTTAACCATCGTGCACAAGT 59.809 43.478 18.64 4.92 0.00 3.16
4807 4990 3.190327 TGGATTTAACCATCGTGCACAAG 59.810 43.478 18.64 5.40 34.77 3.16
4808 4991 3.149981 TGGATTTAACCATCGTGCACAA 58.850 40.909 18.64 0.00 34.77 3.33
4809 4992 2.746904 CTGGATTTAACCATCGTGCACA 59.253 45.455 18.64 4.45 39.34 4.57
4810 4993 2.477863 GCTGGATTTAACCATCGTGCAC 60.478 50.000 6.82 6.82 39.34 4.57
4811 4994 1.742831 GCTGGATTTAACCATCGTGCA 59.257 47.619 0.00 0.00 39.34 4.57
4812 4995 1.065551 GGCTGGATTTAACCATCGTGC 59.934 52.381 0.00 0.00 39.34 5.34
4813 4996 1.330521 CGGCTGGATTTAACCATCGTG 59.669 52.381 0.00 0.00 39.34 4.35
4814 4997 1.208535 TCGGCTGGATTTAACCATCGT 59.791 47.619 0.00 0.00 39.34 3.73
4815 4998 1.948104 TCGGCTGGATTTAACCATCG 58.052 50.000 0.00 0.00 39.34 3.84
4816 4999 3.541632 TCTTCGGCTGGATTTAACCATC 58.458 45.455 0.00 0.00 39.34 3.51
4817 5000 3.644966 TCTTCGGCTGGATTTAACCAT 57.355 42.857 0.00 0.00 39.34 3.55
4818 5001 3.426787 TTCTTCGGCTGGATTTAACCA 57.573 42.857 0.00 0.00 38.33 3.67
4819 5002 3.694566 ACATTCTTCGGCTGGATTTAACC 59.305 43.478 0.00 0.00 0.00 2.85
4820 5003 4.494199 CGACATTCTTCGGCTGGATTTAAC 60.494 45.833 0.00 0.00 35.26 2.01
4821 5004 3.621268 CGACATTCTTCGGCTGGATTTAA 59.379 43.478 0.00 0.00 35.26 1.52
4822 5005 3.118920 TCGACATTCTTCGGCTGGATTTA 60.119 43.478 0.00 0.00 39.58 1.40
4823 5006 2.009774 CGACATTCTTCGGCTGGATTT 58.990 47.619 0.00 0.00 35.26 2.17
4824 5007 1.207089 TCGACATTCTTCGGCTGGATT 59.793 47.619 0.00 0.00 39.58 3.01
4825 5008 0.824109 TCGACATTCTTCGGCTGGAT 59.176 50.000 0.00 0.00 39.58 3.41
4826 5009 0.173481 CTCGACATTCTTCGGCTGGA 59.827 55.000 0.00 0.00 39.58 3.86
4827 5010 1.424493 GCTCGACATTCTTCGGCTGG 61.424 60.000 0.00 0.00 39.58 4.85
4828 5011 0.737367 TGCTCGACATTCTTCGGCTG 60.737 55.000 0.00 0.00 39.58 4.85
4829 5012 0.737715 GTGCTCGACATTCTTCGGCT 60.738 55.000 0.00 0.00 39.58 5.52
4830 5013 1.014044 TGTGCTCGACATTCTTCGGC 61.014 55.000 0.00 0.00 39.58 5.54
4831 5014 0.994995 CTGTGCTCGACATTCTTCGG 59.005 55.000 0.00 0.00 39.58 4.30
4832 5015 0.368227 GCTGTGCTCGACATTCTTCG 59.632 55.000 0.00 0.00 40.53 3.79
4833 5016 0.723981 GGCTGTGCTCGACATTCTTC 59.276 55.000 0.00 0.00 32.74 2.87
4834 5017 0.674895 GGGCTGTGCTCGACATTCTT 60.675 55.000 0.00 0.00 32.74 2.52
4835 5018 1.078848 GGGCTGTGCTCGACATTCT 60.079 57.895 0.00 0.00 32.74 2.40
4836 5019 1.364626 CTGGGCTGTGCTCGACATTC 61.365 60.000 0.00 0.00 32.74 2.67
4837 5020 1.376424 CTGGGCTGTGCTCGACATT 60.376 57.895 0.00 0.00 32.74 2.71
4838 5021 2.267006 CTGGGCTGTGCTCGACAT 59.733 61.111 0.00 0.00 32.74 3.06
4839 5022 4.687215 GCTGGGCTGTGCTCGACA 62.687 66.667 0.00 0.00 0.00 4.35
4840 5023 4.687215 TGCTGGGCTGTGCTCGAC 62.687 66.667 0.00 0.00 0.00 4.20
4841 5024 4.383861 CTGCTGGGCTGTGCTCGA 62.384 66.667 0.00 0.00 0.00 4.04
4842 5025 4.694233 ACTGCTGGGCTGTGCTCG 62.694 66.667 1.52 0.00 39.15 5.03
4854 5037 4.479993 GATCCAGCGGCCACTGCT 62.480 66.667 15.67 6.52 45.31 4.24
4856 5039 4.864334 GGGATCCAGCGGCCACTG 62.864 72.222 14.15 14.15 37.42 3.66
4858 5041 4.554036 GAGGGATCCAGCGGCCAC 62.554 72.222 15.23 0.00 0.00 5.01
4861 5044 3.581687 GATCGAGGGATCCAGCGGC 62.582 68.421 20.84 12.27 42.72 6.53
4862 5045 2.653702 GATCGAGGGATCCAGCGG 59.346 66.667 20.84 5.52 42.72 5.52
4863 5046 2.256764 CGATCGAGGGATCCAGCG 59.743 66.667 15.23 16.10 45.16 5.18
4864 5047 1.006805 CACGATCGAGGGATCCAGC 60.007 63.158 24.34 3.36 45.16 4.85
4865 5048 1.006805 GCACGATCGAGGGATCCAG 60.007 63.158 24.34 4.35 45.16 3.86
4866 5049 1.738346 CTGCACGATCGAGGGATCCA 61.738 60.000 24.34 5.89 45.16 3.41
4867 5050 1.006805 CTGCACGATCGAGGGATCC 60.007 63.158 24.34 1.92 45.16 3.36
4868 5051 0.103208 AACTGCACGATCGAGGGATC 59.897 55.000 24.34 1.28 44.63 3.36
4869 5052 1.399714 TAACTGCACGATCGAGGGAT 58.600 50.000 24.34 5.75 34.96 3.85
4870 5053 1.337071 GATAACTGCACGATCGAGGGA 59.663 52.381 24.34 13.49 0.00 4.20
4871 5054 1.067060 TGATAACTGCACGATCGAGGG 59.933 52.381 24.34 11.76 0.00 4.30
4872 5055 2.492019 TGATAACTGCACGATCGAGG 57.508 50.000 24.34 14.40 0.00 4.63
4873 5056 2.983136 GGATGATAACTGCACGATCGAG 59.017 50.000 24.34 16.03 0.00 4.04
4874 5057 2.360801 TGGATGATAACTGCACGATCGA 59.639 45.455 24.34 0.00 0.00 3.59
4875 5058 2.742774 TGGATGATAACTGCACGATCG 58.257 47.619 14.88 14.88 0.00 3.69
4876 5059 4.332543 TGTTTGGATGATAACTGCACGATC 59.667 41.667 0.00 0.00 0.00 3.69
4877 5060 4.094887 GTGTTTGGATGATAACTGCACGAT 59.905 41.667 0.00 0.00 0.00 3.73
4878 5061 3.435327 GTGTTTGGATGATAACTGCACGA 59.565 43.478 0.00 0.00 0.00 4.35
4879 5062 3.436704 AGTGTTTGGATGATAACTGCACG 59.563 43.478 0.00 0.00 0.00 5.34
4880 5063 4.216257 ACAGTGTTTGGATGATAACTGCAC 59.784 41.667 0.00 0.00 38.84 4.57
4881 5064 4.397420 ACAGTGTTTGGATGATAACTGCA 58.603 39.130 0.00 0.00 38.84 4.41
4882 5065 4.436050 CGACAGTGTTTGGATGATAACTGC 60.436 45.833 0.00 0.00 38.84 4.40
4883 5066 4.690748 ACGACAGTGTTTGGATGATAACTG 59.309 41.667 0.00 0.00 40.61 3.16
4884 5067 4.690748 CACGACAGTGTTTGGATGATAACT 59.309 41.667 0.00 0.00 43.15 2.24
4885 5068 4.957971 CACGACAGTGTTTGGATGATAAC 58.042 43.478 0.00 0.00 43.15 1.89
4899 5082 1.953559 AATGCTTCACACACGACAGT 58.046 45.000 0.00 0.00 0.00 3.55
4900 5083 3.291585 GAAAATGCTTCACACACGACAG 58.708 45.455 0.00 0.00 0.00 3.51
4901 5084 2.286125 CGAAAATGCTTCACACACGACA 60.286 45.455 0.00 0.00 0.00 4.35
4902 5085 2.286184 ACGAAAATGCTTCACACACGAC 60.286 45.455 0.00 0.00 0.00 4.34
4903 5086 1.937223 ACGAAAATGCTTCACACACGA 59.063 42.857 0.00 0.00 0.00 4.35
4904 5087 2.383298 ACGAAAATGCTTCACACACG 57.617 45.000 0.00 0.00 0.00 4.49
4905 5088 5.051973 GGTTTAACGAAAATGCTTCACACAC 60.052 40.000 0.00 0.00 0.00 3.82
4906 5089 5.038033 GGTTTAACGAAAATGCTTCACACA 58.962 37.500 0.00 0.00 0.00 3.72
4907 5090 4.145756 CGGTTTAACGAAAATGCTTCACAC 59.854 41.667 0.00 0.00 35.47 3.82
4908 5091 4.035324 TCGGTTTAACGAAAATGCTTCACA 59.965 37.500 0.00 0.00 40.34 3.58
4909 5092 4.529446 TCGGTTTAACGAAAATGCTTCAC 58.471 39.130 0.00 0.00 40.34 3.18
4910 5093 4.815040 TCGGTTTAACGAAAATGCTTCA 57.185 36.364 0.00 0.00 40.34 3.02
4911 5094 4.557301 CCATCGGTTTAACGAAAATGCTTC 59.443 41.667 0.00 0.00 46.92 3.86
4912 5095 4.022676 ACCATCGGTTTAACGAAAATGCTT 60.023 37.500 0.00 0.00 46.92 3.91
4913 5096 3.504520 ACCATCGGTTTAACGAAAATGCT 59.495 39.130 0.00 0.00 46.92 3.79
4914 5097 3.828786 ACCATCGGTTTAACGAAAATGC 58.171 40.909 0.00 0.00 46.92 3.56
4976 5159 1.826720 ACAACCATGGCAGCAAATAGG 59.173 47.619 13.04 0.00 0.00 2.57
4994 5501 6.016360 ACAATTGTTCTTGGATGAATCGAACA 60.016 34.615 4.92 7.66 41.30 3.18
5006 5513 1.068434 ACGCCCAACAATTGTTCTTGG 59.932 47.619 20.85 18.94 35.83 3.61
5054 5561 2.206576 AATGTCCAAGTCTCTTGCCC 57.793 50.000 4.22 0.00 0.00 5.36
5056 5563 3.319122 ACCAAAATGTCCAAGTCTCTTGC 59.681 43.478 4.22 0.00 0.00 4.01
5106 5613 1.439543 AGGTCCAAGTCTCTGCCTTT 58.560 50.000 0.00 0.00 0.00 3.11
5189 5730 3.792904 GCAAGAGAAGCGAGCCTC 58.207 61.111 0.00 0.00 0.00 4.70
5213 5754 4.275936 GCGAACACCTCTGCCATATTTATT 59.724 41.667 0.00 0.00 0.00 1.40
5216 5757 2.017049 GCGAACACCTCTGCCATATTT 58.983 47.619 0.00 0.00 0.00 1.40
5226 5767 0.318762 AGACTCCTTGCGAACACCTC 59.681 55.000 0.00 0.00 0.00 3.85
5230 5771 0.976641 ATCCAGACTCCTTGCGAACA 59.023 50.000 0.00 0.00 0.00 3.18
5235 5776 2.235898 AGTGAGAATCCAGACTCCTTGC 59.764 50.000 0.00 0.00 32.84 4.01
5236 5777 4.709397 ACTAGTGAGAATCCAGACTCCTTG 59.291 45.833 0.00 0.00 32.84 3.61
5237 5778 4.941713 ACTAGTGAGAATCCAGACTCCTT 58.058 43.478 0.00 0.00 32.84 3.36
5238 5779 4.601406 ACTAGTGAGAATCCAGACTCCT 57.399 45.455 0.00 0.00 32.84 3.69
5268 5813 7.118723 AGCATACAAAGTGGATTAAAGATCCA 58.881 34.615 3.70 3.70 45.24 3.41
5269 5814 7.573968 AGCATACAAAGTGGATTAAAGATCC 57.426 36.000 0.00 0.00 38.66 3.36
5270 5815 8.897752 AGAAGCATACAAAGTGGATTAAAGATC 58.102 33.333 0.00 0.00 0.00 2.75
5272 5817 9.162764 GTAGAAGCATACAAAGTGGATTAAAGA 57.837 33.333 0.00 0.00 0.00 2.52
5273 5818 8.946085 TGTAGAAGCATACAAAGTGGATTAAAG 58.054 33.333 0.00 0.00 32.80 1.85
5274 5819 8.856153 TGTAGAAGCATACAAAGTGGATTAAA 57.144 30.769 0.00 0.00 32.80 1.52
5275 5820 8.856153 TTGTAGAAGCATACAAAGTGGATTAA 57.144 30.769 6.69 0.00 41.47 1.40
5276 5821 8.100791 ACTTGTAGAAGCATACAAAGTGGATTA 58.899 33.333 0.00 0.00 43.22 1.75
5277 5822 6.942576 ACTTGTAGAAGCATACAAAGTGGATT 59.057 34.615 0.00 0.00 43.22 3.01
5278 5823 6.372659 CACTTGTAGAAGCATACAAAGTGGAT 59.627 38.462 18.32 0.00 43.22 3.41
5279 5824 5.700832 CACTTGTAGAAGCATACAAAGTGGA 59.299 40.000 18.32 0.00 43.22 4.02
5280 5825 5.106555 CCACTTGTAGAAGCATACAAAGTGG 60.107 44.000 23.65 23.65 45.42 4.00
5281 5826 5.106555 CCCACTTGTAGAAGCATACAAAGTG 60.107 44.000 18.68 18.68 43.22 3.16
5282 5827 5.003804 CCCACTTGTAGAAGCATACAAAGT 58.996 41.667 0.00 7.63 43.22 2.66
5283 5828 4.396166 CCCCACTTGTAGAAGCATACAAAG 59.604 45.833 0.00 6.29 43.22 2.77
5284 5829 4.331968 CCCCACTTGTAGAAGCATACAAA 58.668 43.478 0.00 0.00 43.22 2.83
5285 5830 3.308117 CCCCCACTTGTAGAAGCATACAA 60.308 47.826 0.00 8.36 42.01 2.41
5286 5831 2.238646 CCCCCACTTGTAGAAGCATACA 59.761 50.000 0.00 0.00 33.88 2.29
5287 5832 2.504175 TCCCCCACTTGTAGAAGCATAC 59.496 50.000 0.00 0.00 31.68 2.39
5288 5833 2.771943 CTCCCCCACTTGTAGAAGCATA 59.228 50.000 0.00 0.00 31.68 3.14
5289 5834 1.561542 CTCCCCCACTTGTAGAAGCAT 59.438 52.381 0.00 0.00 31.68 3.79
5290 5835 0.984230 CTCCCCCACTTGTAGAAGCA 59.016 55.000 0.00 0.00 31.68 3.91
5291 5836 0.393132 GCTCCCCCACTTGTAGAAGC 60.393 60.000 0.00 0.00 31.68 3.86
5292 5837 0.253327 GGCTCCCCCACTTGTAGAAG 59.747 60.000 0.00 0.00 35.07 2.85
5293 5838 0.474854 TGGCTCCCCCACTTGTAGAA 60.475 55.000 0.00 0.00 39.18 2.10
5294 5839 0.474854 TTGGCTCCCCCACTTGTAGA 60.475 55.000 0.00 0.00 45.34 2.59
5295 5840 0.035056 CTTGGCTCCCCCACTTGTAG 60.035 60.000 0.00 0.00 45.34 2.74
5296 5841 0.770557 ACTTGGCTCCCCCACTTGTA 60.771 55.000 0.00 0.00 45.34 2.41
5297 5842 0.770557 TACTTGGCTCCCCCACTTGT 60.771 55.000 0.00 0.00 45.34 3.16
5298 5843 0.322546 GTACTTGGCTCCCCCACTTG 60.323 60.000 0.00 0.00 45.34 3.16
5299 5844 0.770557 TGTACTTGGCTCCCCCACTT 60.771 55.000 0.00 0.00 45.34 3.16
5300 5845 0.550147 ATGTACTTGGCTCCCCCACT 60.550 55.000 0.00 0.00 45.34 4.00
5301 5846 1.134189 GTATGTACTTGGCTCCCCCAC 60.134 57.143 0.00 0.00 45.34 4.61
5302 5847 1.209621 GTATGTACTTGGCTCCCCCA 58.790 55.000 0.00 0.00 43.51 4.96
5306 5851 2.614057 GCATGTGTATGTACTTGGCTCC 59.386 50.000 0.00 0.00 36.65 4.70
5309 5854 4.574421 TGTATGCATGTGTATGTACTTGGC 59.426 41.667 10.16 0.00 36.65 4.52
5329 5874 3.627123 GTGATACATGGTTGCTGCATGTA 59.373 43.478 14.13 14.13 43.26 2.29
5330 5875 2.424601 GTGATACATGGTTGCTGCATGT 59.575 45.455 1.84 7.54 41.69 3.21
5331 5876 2.424246 TGTGATACATGGTTGCTGCATG 59.576 45.455 1.84 0.58 0.00 4.06
5333 5878 2.197283 TGTGATACATGGTTGCTGCA 57.803 45.000 0.00 0.00 0.00 4.41
5334 5879 3.303329 CGTATGTGATACATGGTTGCTGC 60.303 47.826 4.78 0.00 39.53 5.25
5335 5880 3.303329 GCGTATGTGATACATGGTTGCTG 60.303 47.826 4.78 0.00 39.53 4.41
5336 5881 2.872245 GCGTATGTGATACATGGTTGCT 59.128 45.455 4.78 0.00 39.53 3.91
5338 5883 3.202097 TGGCGTATGTGATACATGGTTG 58.798 45.455 4.78 0.00 39.53 3.77
5340 5885 3.070878 TGATGGCGTATGTGATACATGGT 59.929 43.478 4.78 0.00 39.53 3.55
5341 5886 3.663025 TGATGGCGTATGTGATACATGG 58.337 45.455 4.78 0.00 39.53 3.66
5342 5887 4.931002 TGATGATGGCGTATGTGATACATG 59.069 41.667 4.78 0.00 39.53 3.21
5343 5888 5.151297 TGATGATGGCGTATGTGATACAT 57.849 39.130 0.00 0.00 42.35 2.29
5344 5889 4.599047 TGATGATGGCGTATGTGATACA 57.401 40.909 0.00 0.00 35.48 2.29
5345 5890 5.063944 GGAATGATGATGGCGTATGTGATAC 59.936 44.000 0.00 0.00 0.00 2.24
5346 5891 5.046376 AGGAATGATGATGGCGTATGTGATA 60.046 40.000 0.00 0.00 0.00 2.15
5347 5892 4.005650 GGAATGATGATGGCGTATGTGAT 58.994 43.478 0.00 0.00 0.00 3.06
5348 5893 3.071457 AGGAATGATGATGGCGTATGTGA 59.929 43.478 0.00 0.00 0.00 3.58
5349 5894 3.405831 AGGAATGATGATGGCGTATGTG 58.594 45.455 0.00 0.00 0.00 3.21
5350 5895 3.557898 GGAGGAATGATGATGGCGTATGT 60.558 47.826 0.00 0.00 0.00 2.29
5351 5896 3.005554 GGAGGAATGATGATGGCGTATG 58.994 50.000 0.00 0.00 0.00 2.39
5352 5897 2.026822 GGGAGGAATGATGATGGCGTAT 60.027 50.000 0.00 0.00 0.00 3.06
5356 5901 0.479815 TGGGGAGGAATGATGATGGC 59.520 55.000 0.00 0.00 0.00 4.40
5383 5928 6.505044 ACCTTTAATCATCGGTACCAAAAC 57.495 37.500 13.54 0.00 0.00 2.43
5390 5935 3.102052 GGCGACCTTTAATCATCGGTA 57.898 47.619 0.00 0.00 35.15 4.02
5412 5957 1.340889 ACGCCTTTAACTACGTCCACA 59.659 47.619 0.00 0.00 32.37 4.17
5413 5958 1.988467 GACGCCTTTAACTACGTCCAC 59.012 52.381 10.65 0.00 46.84 4.02
5450 5996 1.289160 CCTCCTTCCCTGACCATTCA 58.711 55.000 0.00 0.00 0.00 2.57
5451 5997 0.548510 CCCTCCTTCCCTGACCATTC 59.451 60.000 0.00 0.00 0.00 2.67
5473 6019 5.848406 AGGTAATGCAGTGATAGAAGCTAC 58.152 41.667 0.00 0.00 0.00 3.58
5482 6028 0.541392 TGCGGAGGTAATGCAGTGAT 59.459 50.000 0.00 0.00 34.03 3.06
5489 6035 0.808755 GTGGGTTTGCGGAGGTAATG 59.191 55.000 0.00 0.00 0.00 1.90
5514 6060 8.965172 CGCAAGGTTATTACTAATATATAGGCG 58.035 37.037 0.00 0.00 0.00 5.52
5521 6067 9.772973 TCATGAACGCAAGGTTATTACTAATAT 57.227 29.630 0.00 0.00 37.50 1.28
5522 6068 9.602568 TTCATGAACGCAAGGTTATTACTAATA 57.397 29.630 3.38 0.00 37.50 0.98
5523 6069 8.500753 TTCATGAACGCAAGGTTATTACTAAT 57.499 30.769 3.38 0.00 37.50 1.73
5525 6071 6.537301 CCTTCATGAACGCAAGGTTATTACTA 59.463 38.462 3.38 0.00 37.50 1.82
5526 6072 5.354234 CCTTCATGAACGCAAGGTTATTACT 59.646 40.000 3.38 0.00 37.50 2.24
5527 6073 5.569413 CCTTCATGAACGCAAGGTTATTAC 58.431 41.667 3.38 0.00 37.50 1.89
5529 6075 3.119495 GCCTTCATGAACGCAAGGTTATT 60.119 43.478 20.32 0.00 37.50 1.40
5531 6077 1.810151 GCCTTCATGAACGCAAGGTTA 59.190 47.619 20.32 0.00 37.50 2.85
5532 6078 0.598065 GCCTTCATGAACGCAAGGTT 59.402 50.000 20.32 0.00 37.50 3.50
5533 6079 3.593704 TTTGCCTTCATGAACGCAAGGT 61.594 45.455 30.32 0.00 41.06 3.50
5534 6080 0.597568 TTGCCTTCATGAACGCAAGG 59.402 50.000 29.35 19.44 46.39 3.61
5535 6081 2.420628 TTTGCCTTCATGAACGCAAG 57.579 45.000 30.32 12.94 41.06 4.01
5536 6082 3.383620 AATTTGCCTTCATGAACGCAA 57.616 38.095 29.35 29.35 39.37 4.85
5537 6083 3.058450 CAAATTTGCCTTCATGAACGCA 58.942 40.909 22.98 22.98 32.11 5.24
5538 6084 3.316283 TCAAATTTGCCTTCATGAACGC 58.684 40.909 18.95 18.95 0.00 4.84
5539 6085 4.383649 CACTCAAATTTGCCTTCATGAACG 59.616 41.667 13.54 1.74 0.00 3.95
5540 6086 4.687483 CCACTCAAATTTGCCTTCATGAAC 59.313 41.667 13.54 0.00 0.00 3.18
5541 6087 4.344679 ACCACTCAAATTTGCCTTCATGAA 59.655 37.500 13.54 8.12 0.00 2.57
5542 6088 3.896888 ACCACTCAAATTTGCCTTCATGA 59.103 39.130 13.54 0.00 0.00 3.07
5561 6107 2.607038 CGATGTTGAGTGAAGTCGACCA 60.607 50.000 13.01 0.37 30.59 4.02
5563 6109 2.911723 CTCGATGTTGAGTGAAGTCGAC 59.088 50.000 7.70 7.70 34.79 4.20
5564 6110 2.812011 TCTCGATGTTGAGTGAAGTCGA 59.188 45.455 0.00 0.00 37.28 4.20
5600 6146 3.407698 TGTTGCATCCTCGTTGTATGTT 58.592 40.909 0.00 0.00 0.00 2.71
5609 6155 3.908189 TGCCATGTTGCATCCTCG 58.092 55.556 0.00 0.00 36.04 4.63
5620 6166 4.517952 TGTTTAGGTGTTGAATGCCATG 57.482 40.909 0.00 0.00 0.00 3.66
5624 6170 8.263940 TCTTAGTATGTTTAGGTGTTGAATGC 57.736 34.615 0.00 0.00 0.00 3.56
5647 6193 5.131142 AGTTTTCACGGATATGGAGGAATCT 59.869 40.000 0.00 0.00 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.