Multiple sequence alignment - TraesCS3B01G246400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G246400 chr3B 100.000 3887 0 0 1 3887 391876168 391872282 0.000000e+00 7179.0
1 TraesCS3B01G246400 chr3B 81.720 279 35 14 489 756 70602501 70602228 6.540000e-53 219.0
2 TraesCS3B01G246400 chr3B 98.438 64 1 0 1666 1729 201562197 201562260 3.170000e-21 113.0
3 TraesCS3B01G246400 chr3A 96.825 1984 51 5 1912 3887 391489384 391491363 0.000000e+00 3304.0
4 TraesCS3B01G246400 chr3A 81.843 369 44 12 1792 2140 569854983 569854618 4.910000e-74 289.0
5 TraesCS3B01G246400 chr3A 82.173 359 40 14 1792 2129 467788440 467788085 1.770000e-73 287.0
6 TraesCS3B01G246400 chr3A 81.616 359 40 15 1792 2129 467773591 467773238 1.380000e-69 274.0
7 TraesCS3B01G246400 chr3A 90.805 174 10 4 1435 1602 662422344 662422517 1.090000e-55 228.0
8 TraesCS3B01G246400 chr3A 92.254 142 5 2 1762 1903 391488989 391489124 3.060000e-46 196.0
9 TraesCS3B01G246400 chr3A 97.196 107 2 1 963 1069 391488334 391488439 3.090000e-41 180.0
10 TraesCS3B01G246400 chr3A 92.105 114 8 1 1326 1439 391488862 391488974 4.020000e-35 159.0
11 TraesCS3B01G246400 chr3A 95.833 96 3 1 784 879 391488189 391488283 1.870000e-33 154.0
12 TraesCS3B01G246400 chr3A 95.349 43 2 0 1729 1771 653512136 653512178 6.970000e-08 69.4
13 TraesCS3B01G246400 chr3D 95.605 1661 58 7 2235 3887 297466564 297464911 0.000000e+00 2649.0
14 TraesCS3B01G246400 chr3D 86.200 529 28 13 952 1443 297467887 297467367 7.390000e-147 531.0
15 TraesCS3B01G246400 chr3D 89.091 385 20 9 61 441 297468647 297468281 3.540000e-125 459.0
16 TraesCS3B01G246400 chr3D 88.571 385 25 9 1762 2128 297467295 297466912 2.130000e-122 449.0
17 TraesCS3B01G246400 chr3D 94.472 199 8 2 733 931 297468073 297467878 1.750000e-78 303.0
18 TraesCS3B01G246400 chr3D 81.550 271 32 16 495 756 90777047 90777308 1.420000e-49 207.0
19 TraesCS3B01G246400 chr3D 78.571 294 40 18 479 756 22360464 22360178 5.160000e-39 172.0
20 TraesCS3B01G246400 chr3D 100.000 64 0 0 1666 1729 559909640 559909577 6.820000e-23 119.0
21 TraesCS3B01G246400 chr3D 90.411 73 6 1 2155 2227 297466913 297466842 1.150000e-15 95.3
22 TraesCS3B01G246400 chr1D 89.086 1017 72 16 2391 3393 44641957 44640966 0.000000e+00 1227.0
23 TraesCS3B01G246400 chr1D 86.611 239 26 2 2953 3190 44640933 44640700 3.850000e-65 259.0
24 TraesCS3B01G246400 chr1D 91.329 173 10 3 1436 1603 68439164 68439336 8.400000e-57 231.0
25 TraesCS3B01G246400 chr1D 91.716 169 10 2 1436 1600 458805541 458805373 8.400000e-57 231.0
26 TraesCS3B01G246400 chr1D 95.349 43 2 0 1727 1769 472174475 472174433 6.970000e-08 69.4
27 TraesCS3B01G246400 chr1B 89.075 897 64 17 2448 3331 63959469 63958594 0.000000e+00 1083.0
28 TraesCS3B01G246400 chr1B 78.397 287 38 19 478 756 573625995 573626265 8.640000e-37 165.0
29 TraesCS3B01G246400 chr1B 98.438 64 1 0 1666 1729 633730286 633730349 3.170000e-21 113.0
30 TraesCS3B01G246400 chr1A 89.610 847 66 12 2391 3230 44407081 44406250 0.000000e+00 1057.0
31 TraesCS3B01G246400 chr1A 82.656 369 42 11 1792 2140 33806830 33807196 1.360000e-79 307.0
32 TraesCS3B01G246400 chr1A 82.895 228 29 6 1435 1655 74014239 74014463 3.060000e-46 196.0
33 TraesCS3B01G246400 chr1A 87.500 160 15 2 3239 3393 44406186 44406027 3.090000e-41 180.0
34 TraesCS3B01G246400 chr1A 100.000 64 0 0 1666 1729 246321281 246321344 6.820000e-23 119.0
35 TraesCS3B01G246400 chr1A 97.436 39 1 0 3192 3230 44406217 44406179 2.510000e-07 67.6
36 TraesCS3B01G246400 chr7A 82.385 369 43 10 1792 2140 546936888 546936522 6.310000e-78 302.0
37 TraesCS3B01G246400 chr7A 82.466 365 42 11 1792 2136 718415471 718415833 2.270000e-77 300.0
38 TraesCS3B01G246400 chr2A 82.402 358 41 9 1792 2129 728718819 728719174 3.800000e-75 292.0
39 TraesCS3B01G246400 chr2A 95.349 43 2 0 1729 1771 66095284 66095242 6.970000e-08 69.4
40 TraesCS3B01G246400 chr5A 81.843 369 45 11 1792 2140 681587042 681587408 1.370000e-74 291.0
41 TraesCS3B01G246400 chr2D 81.616 359 42 14 1792 2129 548512978 548513333 3.830000e-70 276.0
42 TraesCS3B01G246400 chr2D 75.192 520 95 28 240 736 562228397 562227889 8.460000e-52 215.0
43 TraesCS3B01G246400 chr2D 98.438 64 1 0 1666 1729 630267812 630267749 3.170000e-21 113.0
44 TraesCS3B01G246400 chr5D 81.337 359 42 15 1792 2129 235592038 235592392 6.400000e-68 268.0
45 TraesCS3B01G246400 chr5D 93.443 61 3 1 1606 1666 420877346 420877405 5.350000e-14 89.8
46 TraesCS3B01G246400 chr5D 95.349 43 2 0 1729 1771 535868712 535868670 6.970000e-08 69.4
47 TraesCS3B01G246400 chr5B 79.944 359 48 14 1792 2129 607192712 607192357 3.880000e-60 243.0
48 TraesCS3B01G246400 chr5B 85.238 210 20 6 1435 1633 428579362 428579153 5.090000e-49 206.0
49 TraesCS3B01G246400 chr5B 78.445 283 45 13 477 750 644460363 644460088 1.860000e-38 171.0
50 TraesCS3B01G246400 chr5B 90.476 63 6 0 1604 1666 657888573 657888635 2.490000e-12 84.2
51 TraesCS3B01G246400 chr5B 95.556 45 2 0 1727 1771 590457306 590457350 5.390000e-09 73.1
52 TraesCS3B01G246400 chr5B 95.349 43 2 0 1727 1769 411516843 411516885 6.970000e-08 69.4
53 TraesCS3B01G246400 chr4B 93.373 166 8 2 1435 1597 619530939 619530774 3.880000e-60 243.0
54 TraesCS3B01G246400 chr4B 93.789 161 7 1 1436 1593 3868891 3869051 5.020000e-59 239.0
55 TraesCS3B01G246400 chr4B 93.548 62 4 0 1605 1666 189086193 189086254 4.140000e-15 93.5
56 TraesCS3B01G246400 chr4B 88.679 53 5 1 1729 1780 272427609 272427557 3.240000e-06 63.9
57 TraesCS3B01G246400 chr4D 92.121 165 9 2 1436 1596 93336848 93336684 3.020000e-56 230.0
58 TraesCS3B01G246400 chr4D 98.438 64 1 0 1666 1729 148608872 148608935 3.170000e-21 113.0
59 TraesCS3B01G246400 chr6D 90.751 173 11 3 1435 1602 431000181 431000009 3.910000e-55 226.0
60 TraesCS3B01G246400 chr6D 79.273 275 42 11 477 745 331204175 331203910 1.110000e-40 178.0
61 TraesCS3B01G246400 chr6D 94.643 56 3 0 1611 1666 359532986 359532931 1.920000e-13 87.9
62 TraesCS3B01G246400 chr6D 90.769 65 4 2 1612 1675 447247900 447247837 6.920000e-13 86.1
63 TraesCS3B01G246400 chr6B 88.298 188 17 3 1957 2140 506170237 506170423 1.820000e-53 220.0
64 TraesCS3B01G246400 chr7D 80.556 252 29 15 508 746 622437311 622437067 3.990000e-40 176.0
65 TraesCS3B01G246400 chr7D 79.167 264 41 13 496 750 58866548 58866290 1.860000e-38 171.0
66 TraesCS3B01G246400 chr7D 91.803 61 5 0 1606 1666 2524422 2524362 6.920000e-13 86.1
67 TraesCS3B01G246400 chr7D 97.561 41 1 0 1729 1769 34334168 34334208 1.940000e-08 71.3
68 TraesCS3B01G246400 chr7B 100.000 64 0 0 1666 1729 662736098 662736035 6.820000e-23 119.0
69 TraesCS3B01G246400 chr7B 98.438 64 1 0 1666 1729 90401778 90401841 3.170000e-21 113.0
70 TraesCS3B01G246400 chrUn 98.438 64 1 0 1666 1729 416132334 416132397 3.170000e-21 113.0
71 TraesCS3B01G246400 chrUn 97.368 38 1 0 1727 1764 127033459 127033496 9.010000e-07 65.8
72 TraesCS3B01G246400 chr4A 89.041 73 7 1 1594 1666 737382232 737382303 5.350000e-14 89.8
73 TraesCS3B01G246400 chr4A 93.220 59 4 0 1608 1666 543742181 543742123 1.920000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G246400 chr3B 391872282 391876168 3886 True 7179.000000 7179 100.000000 1 3887 1 chr3B.!!$R2 3886
1 TraesCS3B01G246400 chr3A 391488189 391491363 3174 False 798.600000 3304 94.842600 784 3887 5 chr3A.!!$F3 3103
2 TraesCS3B01G246400 chr3D 297464911 297468647 3736 True 747.716667 2649 90.725000 61 3887 6 chr3D.!!$R3 3826
3 TraesCS3B01G246400 chr1D 44640700 44641957 1257 True 743.000000 1227 87.848500 2391 3393 2 chr1D.!!$R3 1002
4 TraesCS3B01G246400 chr1B 63958594 63959469 875 True 1083.000000 1083 89.075000 2448 3331 1 chr1B.!!$R1 883
5 TraesCS3B01G246400 chr1A 44406027 44407081 1054 True 434.866667 1057 91.515333 2391 3393 3 chr1A.!!$R1 1002
6 TraesCS3B01G246400 chr2D 562227889 562228397 508 True 215.000000 215 75.192000 240 736 1 chr2D.!!$R1 496

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
864 1000 0.110486 GTGCCCATCCATAATCGGGT 59.890 55.0 0.00 0.0 41.11 5.28 F
1154 1309 0.107456 CCTAGGTACGCTCCGGACTA 59.893 60.0 0.00 0.0 40.97 2.59 F
1199 1354 0.179156 CAGCAATGCCTAAGCGGTTG 60.179 55.0 10.73 0.0 44.31 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1747 2143 1.076677 AGTCCTACTCCTTCCGTTCCA 59.923 52.381 0.00 0.0 0.0 3.53 R
2133 2797 4.339872 TTTGAAAGGAACATTGCTGCAT 57.660 36.364 1.84 0.0 0.0 3.96 R
3173 4142 5.263599 TGGGAGCAAAGAATGATGTGTATT 58.736 37.500 0.00 0.0 0.0 1.89 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.309296 TGAGATCTCATACAAGTCCCCC 58.691 50.000 21.67 0.00 34.14 5.40
36 37 3.343505 CCCCCTCCCTCTCTCGTA 58.656 66.667 0.00 0.00 0.00 3.43
37 38 1.151908 CCCCCTCCCTCTCTCGTAG 59.848 68.421 0.00 0.00 0.00 3.51
38 39 1.354168 CCCCCTCCCTCTCTCGTAGA 61.354 65.000 0.00 0.00 0.00 2.59
51 52 2.437085 TCGTAGAGAGCCTGATGGAA 57.563 50.000 0.00 0.00 34.57 3.53
52 53 2.302260 TCGTAGAGAGCCTGATGGAAG 58.698 52.381 0.00 0.00 34.57 3.46
53 54 2.092375 TCGTAGAGAGCCTGATGGAAGA 60.092 50.000 0.00 0.00 34.57 2.87
54 55 2.034053 CGTAGAGAGCCTGATGGAAGAC 59.966 54.545 0.00 0.00 34.57 3.01
55 56 2.548464 AGAGAGCCTGATGGAAGACT 57.452 50.000 0.00 0.00 34.57 3.24
56 57 2.387757 AGAGAGCCTGATGGAAGACTC 58.612 52.381 0.00 0.00 34.57 3.36
57 58 1.066908 GAGAGCCTGATGGAAGACTCG 59.933 57.143 0.00 0.00 34.57 4.18
58 59 0.529555 GAGCCTGATGGAAGACTCGC 60.530 60.000 0.00 0.00 34.57 5.03
59 60 1.522580 GCCTGATGGAAGACTCGCC 60.523 63.158 0.00 0.00 34.57 5.54
69 70 4.021229 TGGAAGACTCGCCAAAGTAGATA 58.979 43.478 0.00 0.00 0.00 1.98
82 83 3.963428 AGTAGATAAATAGGGGCAGCG 57.037 47.619 0.00 0.00 0.00 5.18
116 117 2.840038 AGGATGGATCAGTTGTAGTGCA 59.160 45.455 0.00 0.00 0.00 4.57
150 151 1.374252 GTGGCATCGTCAGGTTCGT 60.374 57.895 0.00 0.00 0.00 3.85
187 188 4.446857 TGCGACGTAGTTGAAGAAAAAG 57.553 40.909 0.00 0.00 47.00 2.27
207 208 4.664688 AGAGTTGGTCTTCCATGGATTT 57.335 40.909 17.06 0.00 43.91 2.17
211 212 4.284234 AGTTGGTCTTCCATGGATTTTTGG 59.716 41.667 17.06 2.43 43.91 3.28
212 213 3.855668 TGGTCTTCCATGGATTTTTGGT 58.144 40.909 17.06 0.00 39.03 3.67
213 214 4.230455 TGGTCTTCCATGGATTTTTGGTT 58.770 39.130 17.06 0.00 39.03 3.67
214 215 4.657969 TGGTCTTCCATGGATTTTTGGTTT 59.342 37.500 17.06 0.00 39.03 3.27
215 216 5.131809 TGGTCTTCCATGGATTTTTGGTTTT 59.868 36.000 17.06 0.00 39.03 2.43
216 217 6.061441 GGTCTTCCATGGATTTTTGGTTTTT 58.939 36.000 17.06 0.00 34.48 1.94
217 218 6.017192 GGTCTTCCATGGATTTTTGGTTTTTG 60.017 38.462 17.06 0.00 34.48 2.44
222 223 7.542025 TCCATGGATTTTTGGTTTTTGTTTTG 58.458 30.769 11.44 0.00 34.48 2.44
235 236 7.640240 TGGTTTTTGTTTTGTTTTGTTTTCTCG 59.360 29.630 0.00 0.00 0.00 4.04
243 245 5.462034 TGTTTTGTTTTCTCGCCATTTTG 57.538 34.783 0.00 0.00 0.00 2.44
256 258 7.148641 TCTCGCCATTTTGCTTTGTTTATTTA 58.851 30.769 0.00 0.00 0.00 1.40
319 341 8.940768 TTTCATTGTTTTTCTTAGGGTTTCTG 57.059 30.769 0.00 0.00 0.00 3.02
338 360 8.701540 GGTTTCTGTGTTTCTTTTTCGTTTTTA 58.298 29.630 0.00 0.00 0.00 1.52
342 364 9.763465 TCTGTGTTTCTTTTTCGTTTTTACTAG 57.237 29.630 0.00 0.00 0.00 2.57
458 485 8.439993 TTTTATACTTATGTGTGTGTGTGTGT 57.560 30.769 0.00 0.00 0.00 3.72
459 486 5.922739 ATACTTATGTGTGTGTGTGTGTG 57.077 39.130 0.00 0.00 0.00 3.82
460 487 3.605634 ACTTATGTGTGTGTGTGTGTGT 58.394 40.909 0.00 0.00 0.00 3.72
461 488 3.373748 ACTTATGTGTGTGTGTGTGTGTG 59.626 43.478 0.00 0.00 0.00 3.82
462 489 1.819928 ATGTGTGTGTGTGTGTGTGT 58.180 45.000 0.00 0.00 0.00 3.72
463 490 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
464 491 0.454285 GTGTGTGTGTGTGTGTGTGC 60.454 55.000 0.00 0.00 0.00 4.57
465 492 1.225991 GTGTGTGTGTGTGTGTGCG 60.226 57.895 0.00 0.00 0.00 5.34
467 494 1.225991 GTGTGTGTGTGTGTGCGTG 60.226 57.895 0.00 0.00 0.00 5.34
471 498 1.225991 GTGTGTGTGTGCGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
472 499 1.669437 TGTGTGTGTGCGTGTGTGT 60.669 52.632 0.00 0.00 0.00 3.72
473 500 1.225991 GTGTGTGTGCGTGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
486 513 5.518487 TGCGTGTGTGTGTATCTAATACATG 59.482 40.000 3.33 0.00 46.39 3.21
708 844 8.682936 AATTTTGTTTAATACATTGCCAACCA 57.317 26.923 0.00 0.00 36.44 3.67
709 845 8.860780 ATTTTGTTTAATACATTGCCAACCAT 57.139 26.923 0.00 0.00 36.44 3.55
710 846 8.682936 TTTTGTTTAATACATTGCCAACCATT 57.317 26.923 0.00 0.00 36.44 3.16
711 847 8.682936 TTTGTTTAATACATTGCCAACCATTT 57.317 26.923 0.00 0.00 36.44 2.32
712 848 9.778741 TTTGTTTAATACATTGCCAACCATTTA 57.221 25.926 0.00 0.00 36.44 1.40
713 849 9.950496 TTGTTTAATACATTGCCAACCATTTAT 57.050 25.926 0.00 0.00 36.44 1.40
714 850 9.950496 TGTTTAATACATTGCCAACCATTTATT 57.050 25.926 0.00 0.00 0.00 1.40
721 857 8.940768 ACATTGCCAACCATTTATTTATACAC 57.059 30.769 0.00 0.00 0.00 2.90
722 858 8.535335 ACATTGCCAACCATTTATTTATACACA 58.465 29.630 0.00 0.00 0.00 3.72
723 859 9.545105 CATTGCCAACCATTTATTTATACACAT 57.455 29.630 0.00 0.00 0.00 3.21
725 861 9.950496 TTGCCAACCATTTATTTATACACATTT 57.050 25.926 0.00 0.00 0.00 2.32
790 926 0.737367 CATCGGACTCGCTTGAAGCA 60.737 55.000 18.22 3.68 42.58 3.91
864 1000 0.110486 GTGCCCATCCATAATCGGGT 59.890 55.000 0.00 0.00 41.11 5.28
889 1025 2.543777 TTGTACAGCCTTCCAGTCAC 57.456 50.000 0.00 0.00 0.00 3.67
890 1026 1.419381 TGTACAGCCTTCCAGTCACA 58.581 50.000 0.00 0.00 0.00 3.58
916 1052 1.105167 CGGATGGCTCCATTGCACAT 61.105 55.000 2.53 0.00 42.19 3.21
931 1067 1.186200 CACATCAGGAGGAGGAACGA 58.814 55.000 0.00 0.00 0.00 3.85
932 1068 1.550524 CACATCAGGAGGAGGAACGAA 59.449 52.381 0.00 0.00 0.00 3.85
1056 1211 2.995574 CTGTCGTTCCCGGGGAGT 60.996 66.667 23.50 0.00 31.21 3.85
1149 1304 2.894565 CGCTCCTAGGTACGCTCCG 61.895 68.421 9.08 0.00 0.00 4.63
1150 1305 2.553727 GCTCCTAGGTACGCTCCGG 61.554 68.421 9.08 0.00 0.00 5.14
1151 1306 1.147824 CTCCTAGGTACGCTCCGGA 59.852 63.158 9.08 2.93 0.00 5.14
1152 1307 1.153086 TCCTAGGTACGCTCCGGAC 60.153 63.158 9.08 0.00 40.38 4.79
1153 1308 1.153005 CCTAGGTACGCTCCGGACT 60.153 63.158 0.00 0.00 40.97 3.85
1154 1309 0.107456 CCTAGGTACGCTCCGGACTA 59.893 60.000 0.00 0.00 40.97 2.59
1176 1331 2.354203 GCTTCTCCTTGTGTCGGATTCT 60.354 50.000 0.00 0.00 0.00 2.40
1184 1339 0.390340 GTGTCGGATTCTGCTCAGCA 60.390 55.000 0.00 0.00 36.92 4.41
1195 1350 1.354506 GCTCAGCAATGCCTAAGCG 59.645 57.895 0.00 0.00 44.31 4.68
1196 1351 2.020131 CTCAGCAATGCCTAAGCGG 58.980 57.895 0.00 0.00 44.31 5.52
1197 1352 0.745845 CTCAGCAATGCCTAAGCGGT 60.746 55.000 0.00 0.00 44.31 5.68
1199 1354 0.179156 CAGCAATGCCTAAGCGGTTG 60.179 55.000 10.73 0.00 44.31 3.77
1200 1355 0.609131 AGCAATGCCTAAGCGGTTGT 60.609 50.000 10.73 0.00 44.31 3.32
1202 1357 0.881118 CAATGCCTAAGCGGTTGTGT 59.119 50.000 10.73 0.00 44.31 3.72
1221 1381 3.132801 GCTCTCCTTGCAGCCTGC 61.133 66.667 10.45 10.45 45.29 4.85
1242 1402 3.057734 CGGGTTTCATATCTTCGTAGGC 58.942 50.000 0.00 0.00 0.00 3.93
1291 1451 0.582005 GTTGATCATTACGCCTCGGC 59.418 55.000 0.00 0.00 37.85 5.54
1316 1493 2.057830 ACCAGCGGTGAGATGAACA 58.942 52.632 17.83 0.00 38.85 3.18
1322 1499 1.880027 GCGGTGAGATGAACAGGTTTT 59.120 47.619 0.00 0.00 0.00 2.43
1434 1769 6.690194 AGTTTGCTGCTTCAAATATCTAGG 57.310 37.500 0.00 0.00 38.12 3.02
1435 1770 6.183347 AGTTTGCTGCTTCAAATATCTAGGT 58.817 36.000 0.00 0.00 38.12 3.08
1436 1771 7.338710 AGTTTGCTGCTTCAAATATCTAGGTA 58.661 34.615 0.00 0.00 38.12 3.08
1437 1772 7.281100 AGTTTGCTGCTTCAAATATCTAGGTAC 59.719 37.037 0.00 0.00 38.12 3.34
1438 1773 6.485830 TGCTGCTTCAAATATCTAGGTACT 57.514 37.500 0.00 0.00 46.37 2.73
1439 1774 6.516718 TGCTGCTTCAAATATCTAGGTACTC 58.483 40.000 0.00 0.00 41.75 2.59
1440 1775 5.929415 GCTGCTTCAAATATCTAGGTACTCC 59.071 44.000 0.00 0.00 41.75 3.85
1441 1776 6.420913 TGCTTCAAATATCTAGGTACTCCC 57.579 41.667 0.00 0.00 41.75 4.30
1443 1778 6.267928 TGCTTCAAATATCTAGGTACTCCCTC 59.732 42.308 0.00 0.00 44.81 4.30
1444 1779 6.570764 GCTTCAAATATCTAGGTACTCCCTCG 60.571 46.154 0.00 0.00 44.81 4.63
1445 1780 5.322754 TCAAATATCTAGGTACTCCCTCGG 58.677 45.833 0.00 0.00 44.81 4.63
1446 1781 5.078256 CAAATATCTAGGTACTCCCTCGGT 58.922 45.833 0.00 0.00 44.81 4.69
1447 1782 5.336491 AATATCTAGGTACTCCCTCGGTT 57.664 43.478 0.00 0.00 44.81 4.44
1448 1783 2.725221 TCTAGGTACTCCCTCGGTTC 57.275 55.000 0.00 0.00 44.81 3.62
1449 1784 1.918262 TCTAGGTACTCCCTCGGTTCA 59.082 52.381 0.00 0.00 44.81 3.18
1450 1785 2.309755 TCTAGGTACTCCCTCGGTTCAA 59.690 50.000 0.00 0.00 44.81 2.69
1451 1786 2.249309 AGGTACTCCCTCGGTTCAAT 57.751 50.000 0.00 0.00 40.71 2.57
1452 1787 3.393426 AGGTACTCCCTCGGTTCAATA 57.607 47.619 0.00 0.00 40.71 1.90
1453 1788 3.924922 AGGTACTCCCTCGGTTCAATAT 58.075 45.455 0.00 0.00 40.71 1.28
1454 1789 5.070823 AGGTACTCCCTCGGTTCAATATA 57.929 43.478 0.00 0.00 40.71 0.86
1455 1790 5.461327 AGGTACTCCCTCGGTTCAATATAA 58.539 41.667 0.00 0.00 40.71 0.98
1456 1791 5.539193 AGGTACTCCCTCGGTTCAATATAAG 59.461 44.000 0.00 0.00 40.71 1.73
1457 1792 5.303845 GGTACTCCCTCGGTTCAATATAAGT 59.696 44.000 0.00 0.00 0.00 2.24
1458 1793 5.532664 ACTCCCTCGGTTCAATATAAGTC 57.467 43.478 0.00 0.00 0.00 3.01
1459 1794 5.209659 ACTCCCTCGGTTCAATATAAGTCT 58.790 41.667 0.00 0.00 0.00 3.24
1460 1795 5.661759 ACTCCCTCGGTTCAATATAAGTCTT 59.338 40.000 0.00 0.00 0.00 3.01
1461 1796 6.156429 ACTCCCTCGGTTCAATATAAGTCTTT 59.844 38.462 0.00 0.00 0.00 2.52
1462 1797 6.954232 TCCCTCGGTTCAATATAAGTCTTTT 58.046 36.000 0.00 0.00 0.00 2.27
1463 1798 8.081517 TCCCTCGGTTCAATATAAGTCTTTTA 57.918 34.615 0.00 0.00 0.00 1.52
1464 1799 8.202137 TCCCTCGGTTCAATATAAGTCTTTTAG 58.798 37.037 0.00 0.00 0.00 1.85
1465 1800 7.441458 CCCTCGGTTCAATATAAGTCTTTTAGG 59.559 40.741 0.00 0.00 0.00 2.69
1466 1801 7.041984 CCTCGGTTCAATATAAGTCTTTTAGGC 60.042 40.741 0.00 0.00 0.00 3.93
1467 1802 7.332557 TCGGTTCAATATAAGTCTTTTAGGCA 58.667 34.615 0.00 0.00 0.00 4.75
1468 1803 7.990886 TCGGTTCAATATAAGTCTTTTAGGCAT 59.009 33.333 0.00 0.00 0.00 4.40
1469 1804 8.621286 CGGTTCAATATAAGTCTTTTAGGCATT 58.379 33.333 0.00 0.00 0.00 3.56
1480 1815 8.422577 AGTCTTTTAGGCATTTTAAATGGACT 57.577 30.769 17.89 15.44 33.62 3.85
1481 1816 9.528489 AGTCTTTTAGGCATTTTAAATGGACTA 57.472 29.630 17.89 8.66 34.95 2.59
1482 1817 9.569167 GTCTTTTAGGCATTTTAAATGGACTAC 57.431 33.333 17.89 2.41 0.00 2.73
1483 1818 9.303116 TCTTTTAGGCATTTTAAATGGACTACA 57.697 29.630 17.89 3.19 0.00 2.74
1484 1819 9.921637 CTTTTAGGCATTTTAAATGGACTACAA 57.078 29.630 17.89 9.43 0.00 2.41
1485 1820 9.699703 TTTTAGGCATTTTAAATGGACTACAAC 57.300 29.630 17.89 0.48 0.00 3.32
1486 1821 6.909550 AGGCATTTTAAATGGACTACAACA 57.090 33.333 17.89 0.00 0.00 3.33
1487 1822 7.480760 AGGCATTTTAAATGGACTACAACAT 57.519 32.000 17.89 0.00 0.00 2.71
1488 1823 8.588290 AGGCATTTTAAATGGACTACAACATA 57.412 30.769 17.89 0.00 0.00 2.29
1489 1824 8.466798 AGGCATTTTAAATGGACTACAACATAC 58.533 33.333 17.89 0.00 0.00 2.39
1490 1825 7.431084 GGCATTTTAAATGGACTACAACATACG 59.569 37.037 17.89 0.00 0.00 3.06
1491 1826 7.431084 GCATTTTAAATGGACTACAACATACGG 59.569 37.037 17.89 0.00 0.00 4.02
1492 1827 8.670135 CATTTTAAATGGACTACAACATACGGA 58.330 33.333 9.63 0.00 0.00 4.69
1493 1828 8.795842 TTTTAAATGGACTACAACATACGGAT 57.204 30.769 0.00 0.00 0.00 4.18
1494 1829 7.780008 TTAAATGGACTACAACATACGGATG 57.220 36.000 5.94 5.94 39.16 3.51
1496 1831 6.474140 AATGGACTACAACATACGGATGTA 57.526 37.500 15.10 0.00 45.93 2.29
1497 1832 6.665992 ATGGACTACAACATACGGATGTAT 57.334 37.500 15.10 8.21 45.93 2.29
1537 1872 8.992835 AAGTTTAGATTCATTCATTTTGCTCC 57.007 30.769 0.00 0.00 0.00 4.70
1538 1873 7.253422 AGTTTAGATTCATTCATTTTGCTCCG 58.747 34.615 0.00 0.00 0.00 4.63
1539 1874 6.757897 TTAGATTCATTCATTTTGCTCCGT 57.242 33.333 0.00 0.00 0.00 4.69
1540 1875 7.857734 TTAGATTCATTCATTTTGCTCCGTA 57.142 32.000 0.00 0.00 0.00 4.02
1541 1876 6.949352 AGATTCATTCATTTTGCTCCGTAT 57.051 33.333 0.00 0.00 0.00 3.06
1542 1877 6.732154 AGATTCATTCATTTTGCTCCGTATG 58.268 36.000 0.00 0.00 0.00 2.39
1543 1878 5.895636 TTCATTCATTTTGCTCCGTATGT 57.104 34.783 0.00 0.00 0.00 2.29
1544 1879 6.993786 TTCATTCATTTTGCTCCGTATGTA 57.006 33.333 0.00 0.00 0.00 2.29
1545 1880 6.603237 TCATTCATTTTGCTCCGTATGTAG 57.397 37.500 0.00 0.00 0.00 2.74
1546 1881 6.112734 TCATTCATTTTGCTCCGTATGTAGT 58.887 36.000 0.00 0.00 0.00 2.73
1547 1882 6.257849 TCATTCATTTTGCTCCGTATGTAGTC 59.742 38.462 0.00 0.00 0.00 2.59
1548 1883 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
1549 1884 5.670485 TCATTTTGCTCCGTATGTAGTCAT 58.330 37.500 0.00 0.00 38.00 3.06
1550 1885 6.112734 TCATTTTGCTCCGTATGTAGTCATT 58.887 36.000 0.00 0.00 35.70 2.57
1551 1886 6.597672 TCATTTTGCTCCGTATGTAGTCATTT 59.402 34.615 0.00 0.00 35.70 2.32
1552 1887 5.794687 TTTGCTCCGTATGTAGTCATTTG 57.205 39.130 0.00 0.00 35.70 2.32
1553 1888 4.465632 TGCTCCGTATGTAGTCATTTGT 57.534 40.909 0.00 0.00 35.70 2.83
1554 1889 4.827692 TGCTCCGTATGTAGTCATTTGTT 58.172 39.130 0.00 0.00 35.70 2.83
1555 1890 4.629634 TGCTCCGTATGTAGTCATTTGTTG 59.370 41.667 0.00 0.00 35.70 3.33
1556 1891 4.034048 GCTCCGTATGTAGTCATTTGTTGG 59.966 45.833 0.00 0.00 35.70 3.77
1557 1892 5.408880 TCCGTATGTAGTCATTTGTTGGA 57.591 39.130 0.00 0.00 35.70 3.53
1558 1893 5.795972 TCCGTATGTAGTCATTTGTTGGAA 58.204 37.500 0.00 0.00 35.70 3.53
1559 1894 6.411376 TCCGTATGTAGTCATTTGTTGGAAT 58.589 36.000 0.00 0.00 35.70 3.01
1560 1895 6.315144 TCCGTATGTAGTCATTTGTTGGAATG 59.685 38.462 0.00 0.00 38.16 2.67
1561 1896 6.093495 CCGTATGTAGTCATTTGTTGGAATGT 59.907 38.462 0.00 0.00 38.04 2.71
1562 1897 7.180079 CGTATGTAGTCATTTGTTGGAATGTC 58.820 38.462 0.00 0.00 38.04 3.06
1563 1898 7.064609 CGTATGTAGTCATTTGTTGGAATGTCT 59.935 37.037 0.00 0.00 38.39 3.41
1564 1899 9.378551 GTATGTAGTCATTTGTTGGAATGTCTA 57.621 33.333 0.00 0.00 36.94 2.59
1565 1900 7.905604 TGTAGTCATTTGTTGGAATGTCTAG 57.094 36.000 5.31 0.00 37.89 2.43
1566 1901 7.676004 TGTAGTCATTTGTTGGAATGTCTAGA 58.324 34.615 0.00 0.00 37.89 2.43
1567 1902 8.154203 TGTAGTCATTTGTTGGAATGTCTAGAA 58.846 33.333 0.00 0.00 37.89 2.10
1568 1903 8.999431 GTAGTCATTTGTTGGAATGTCTAGAAA 58.001 33.333 0.00 0.00 37.89 2.52
1569 1904 8.103948 AGTCATTTGTTGGAATGTCTAGAAAG 57.896 34.615 0.00 0.00 38.04 2.62
1570 1905 7.939039 AGTCATTTGTTGGAATGTCTAGAAAGA 59.061 33.333 0.00 0.00 38.04 2.52
1587 1922 8.202137 TCTAGAAAGACTTATATTTGGGAACGG 58.798 37.037 0.00 0.00 0.00 4.44
1588 1923 6.954232 AGAAAGACTTATATTTGGGAACGGA 58.046 36.000 0.00 0.00 0.00 4.69
1589 1924 7.048512 AGAAAGACTTATATTTGGGAACGGAG 58.951 38.462 0.00 0.00 0.00 4.63
1590 1925 5.291905 AGACTTATATTTGGGAACGGAGG 57.708 43.478 0.00 0.00 0.00 4.30
1591 1926 4.102681 AGACTTATATTTGGGAACGGAGGG 59.897 45.833 0.00 0.00 0.00 4.30
1592 1927 4.042174 ACTTATATTTGGGAACGGAGGGA 58.958 43.478 0.00 0.00 0.00 4.20
1593 1928 4.663592 ACTTATATTTGGGAACGGAGGGAT 59.336 41.667 0.00 0.00 0.00 3.85
1621 2017 9.639563 ACTAGTTAACTAATTACTACTCCCTCC 57.360 37.037 15.95 0.00 0.00 4.30
1622 2018 7.579761 AGTTAACTAATTACTACTCCCTCCG 57.420 40.000 6.26 0.00 0.00 4.63
1623 2019 7.122048 AGTTAACTAATTACTACTCCCTCCGT 58.878 38.462 6.26 0.00 0.00 4.69
1624 2020 7.617329 AGTTAACTAATTACTACTCCCTCCGTT 59.383 37.037 6.26 0.00 0.00 4.44
1625 2021 6.462552 AACTAATTACTACTCCCTCCGTTC 57.537 41.667 0.00 0.00 0.00 3.95
1626 2022 4.892345 ACTAATTACTACTCCCTCCGTTCC 59.108 45.833 0.00 0.00 0.00 3.62
1627 2023 2.905415 TTACTACTCCCTCCGTTCCA 57.095 50.000 0.00 0.00 0.00 3.53
1628 2024 2.905415 TACTACTCCCTCCGTTCCAA 57.095 50.000 0.00 0.00 0.00 3.53
1629 2025 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
1630 2026 2.332117 ACTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
1631 2027 2.910977 ACTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
1632 2028 4.098894 ACTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
1633 2029 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
1634 2030 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
1635 2031 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
1636 2032 4.966805 ACTCCCTCCGTTCCAAAATAGATA 59.033 41.667 0.00 0.00 0.00 1.98
1637 2033 5.427481 ACTCCCTCCGTTCCAAAATAGATAA 59.573 40.000 0.00 0.00 0.00 1.75
1638 2034 5.677567 TCCCTCCGTTCCAAAATAGATAAC 58.322 41.667 0.00 0.00 0.00 1.89
1639 2035 5.427481 TCCCTCCGTTCCAAAATAGATAACT 59.573 40.000 0.00 0.00 0.00 2.24
1640 2036 5.758784 CCCTCCGTTCCAAAATAGATAACTC 59.241 44.000 0.00 0.00 0.00 3.01
1641 2037 6.346096 CCTCCGTTCCAAAATAGATAACTCA 58.654 40.000 0.00 0.00 0.00 3.41
1642 2038 6.821665 CCTCCGTTCCAAAATAGATAACTCAA 59.178 38.462 0.00 0.00 0.00 3.02
1643 2039 7.201617 CCTCCGTTCCAAAATAGATAACTCAAC 60.202 40.741 0.00 0.00 0.00 3.18
1644 2040 7.391620 TCCGTTCCAAAATAGATAACTCAACT 58.608 34.615 0.00 0.00 0.00 3.16
1645 2041 7.881232 TCCGTTCCAAAATAGATAACTCAACTT 59.119 33.333 0.00 0.00 0.00 2.66
1646 2042 8.512138 CCGTTCCAAAATAGATAACTCAACTTT 58.488 33.333 0.00 0.00 0.00 2.66
1647 2043 9.329913 CGTTCCAAAATAGATAACTCAACTTTG 57.670 33.333 0.00 0.00 0.00 2.77
1716 2112 8.802267 AGGAAAAAGATCCATTTTAACGAATCA 58.198 29.630 6.77 0.00 42.27 2.57
1717 2113 8.860128 GGAAAAAGATCCATTTTAACGAATCAC 58.140 33.333 6.77 0.00 39.42 3.06
1718 2114 9.405587 GAAAAAGATCCATTTTAACGAATCACA 57.594 29.630 6.77 0.00 32.20 3.58
1719 2115 8.742554 AAAAGATCCATTTTAACGAATCACAC 57.257 30.769 0.00 0.00 30.71 3.82
1720 2116 6.106877 AGATCCATTTTAACGAATCACACG 57.893 37.500 0.00 0.00 0.00 4.49
1721 2117 5.642063 AGATCCATTTTAACGAATCACACGT 59.358 36.000 0.00 0.00 45.89 4.49
1722 2118 6.814644 AGATCCATTTTAACGAATCACACGTA 59.185 34.615 0.00 0.00 43.16 3.57
1723 2119 6.397831 TCCATTTTAACGAATCACACGTAG 57.602 37.500 0.00 0.00 43.16 3.51
1724 2120 6.157904 TCCATTTTAACGAATCACACGTAGA 58.842 36.000 0.00 0.00 43.16 2.59
1725 2121 6.309494 TCCATTTTAACGAATCACACGTAGAG 59.691 38.462 0.00 0.00 43.16 2.43
1726 2122 6.309494 CCATTTTAACGAATCACACGTAGAGA 59.691 38.462 0.00 0.00 43.16 3.10
1727 2123 7.010183 CCATTTTAACGAATCACACGTAGAGAT 59.990 37.037 0.00 0.00 43.16 2.75
1728 2124 9.016623 CATTTTAACGAATCACACGTAGAGATA 57.983 33.333 0.00 0.00 43.16 1.98
1729 2125 8.969121 TTTTAACGAATCACACGTAGAGATAA 57.031 30.769 0.00 0.00 43.16 1.75
1730 2126 8.969121 TTTAACGAATCACACGTAGAGATAAA 57.031 30.769 0.00 0.00 43.16 1.40
1731 2127 8.610855 TTAACGAATCACACGTAGAGATAAAG 57.389 34.615 0.00 0.00 43.16 1.85
1732 2128 6.192234 ACGAATCACACGTAGAGATAAAGT 57.808 37.500 0.00 0.00 42.17 2.66
1733 2129 6.618811 ACGAATCACACGTAGAGATAAAGTT 58.381 36.000 0.00 0.00 42.17 2.66
1734 2130 6.527023 ACGAATCACACGTAGAGATAAAGTTG 59.473 38.462 0.00 0.00 42.17 3.16
1735 2131 6.020599 CGAATCACACGTAGAGATAAAGTTGG 60.021 42.308 0.00 0.00 0.00 3.77
1736 2132 5.068234 TCACACGTAGAGATAAAGTTGGG 57.932 43.478 0.00 0.00 0.00 4.12
1737 2133 4.525487 TCACACGTAGAGATAAAGTTGGGT 59.475 41.667 0.00 0.00 0.00 4.51
1738 2134 4.863131 CACACGTAGAGATAAAGTTGGGTC 59.137 45.833 0.00 0.00 0.00 4.46
1739 2135 4.525487 ACACGTAGAGATAAAGTTGGGTCA 59.475 41.667 0.00 0.00 0.00 4.02
1740 2136 5.187186 ACACGTAGAGATAAAGTTGGGTCAT 59.813 40.000 0.00 0.00 0.00 3.06
1741 2137 5.749109 CACGTAGAGATAAAGTTGGGTCATC 59.251 44.000 0.00 0.00 0.00 2.92
1742 2138 5.657302 ACGTAGAGATAAAGTTGGGTCATCT 59.343 40.000 0.00 0.00 0.00 2.90
1743 2139 6.832384 ACGTAGAGATAAAGTTGGGTCATCTA 59.168 38.462 0.00 0.00 0.00 1.98
1744 2140 7.506261 ACGTAGAGATAAAGTTGGGTCATCTAT 59.494 37.037 0.00 0.00 0.00 1.98
1745 2141 8.361139 CGTAGAGATAAAGTTGGGTCATCTATT 58.639 37.037 0.00 0.00 0.00 1.73
1748 2144 9.401058 AGAGATAAAGTTGGGTCATCTATTTTG 57.599 33.333 0.00 0.00 0.00 2.44
1749 2145 8.525290 AGATAAAGTTGGGTCATCTATTTTGG 57.475 34.615 0.00 0.00 0.00 3.28
1750 2146 8.336235 AGATAAAGTTGGGTCATCTATTTTGGA 58.664 33.333 0.00 0.00 0.00 3.53
1751 2147 8.893563 ATAAAGTTGGGTCATCTATTTTGGAA 57.106 30.769 0.00 0.00 0.00 3.53
1752 2148 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
1753 2149 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
1754 2150 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
1755 2151 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
1756 2152 4.263550 TGGGTCATCTATTTTGGAACGGAA 60.264 41.667 0.00 0.00 0.00 4.30
1757 2153 4.335594 GGGTCATCTATTTTGGAACGGAAG 59.664 45.833 0.00 0.00 0.00 3.46
1758 2154 4.335594 GGTCATCTATTTTGGAACGGAAGG 59.664 45.833 0.00 0.00 0.00 3.46
1759 2155 5.183228 GTCATCTATTTTGGAACGGAAGGA 58.817 41.667 0.00 0.00 0.00 3.36
1760 2156 5.294552 GTCATCTATTTTGGAACGGAAGGAG 59.705 44.000 0.00 0.00 0.00 3.69
1814 2216 9.087424 CACATAACACAGGGATATATAACATCG 57.913 37.037 0.00 0.00 0.00 3.84
2121 2785 2.515398 CGGATTATGCCAGCCCCA 59.485 61.111 0.00 0.00 0.00 4.96
2133 2797 2.422803 GCCAGCCCCAACATAATACTCA 60.423 50.000 0.00 0.00 0.00 3.41
2191 2855 3.567478 AGCTGATGAATTGGGTAGACC 57.433 47.619 0.00 0.00 40.81 3.85
2281 3214 3.417069 TGTCACACTGGTGGGAATAAG 57.583 47.619 7.28 0.00 45.71 1.73
2624 3560 9.562408 TCAGGTAAATTGTTCAGTGTGTTTATA 57.438 29.630 0.00 0.00 0.00 0.98
2736 3680 6.392354 ACCATGTCTGTGCTCATTTATTTTG 58.608 36.000 0.00 0.00 0.00 2.44
3143 4112 5.940192 TGATACATTGTTGCTCGAAGTTT 57.060 34.783 0.00 0.00 0.00 2.66
3173 4142 8.708742 GCACTAATTGTATGATATTCGCACTAA 58.291 33.333 0.00 0.00 0.00 2.24
3231 4270 5.694231 TGATTGTCTGGAACATCACTTTG 57.306 39.130 0.00 0.00 37.82 2.77
3234 4273 2.618241 TGTCTGGAACATCACTTTGTGC 59.382 45.455 0.00 0.00 38.20 4.57
3414 4651 3.117745 TCACCATGACCTCCTTGATCAT 58.882 45.455 0.00 0.00 33.28 2.45
3555 4793 3.438017 AAGCGCAGGATCGAGCCTC 62.438 63.158 21.79 13.75 35.66 4.70
3603 4841 0.545309 TCCTCTCCTCCCCACTTGTG 60.545 60.000 0.00 0.00 0.00 3.33
3690 4928 5.478332 AGGACATCAGAATGGAAAGAAAACC 59.522 40.000 0.00 0.00 37.19 3.27
3697 4937 6.554605 TCAGAATGGAAAGAAAACCAAGGAAT 59.445 34.615 0.00 0.00 39.69 3.01
3776 5016 1.380380 GGATTTGGTGCCCTCCTGG 60.380 63.158 0.00 0.00 37.09 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.309296 GGGGGACTTGTATGAGATCTCA 58.691 50.000 27.03 27.03 44.59 3.27
19 20 1.151908 CTACGAGAGAGGGAGGGGG 59.848 68.421 0.00 0.00 0.00 5.40
20 21 2.232622 TCTACGAGAGAGGGAGGGG 58.767 63.158 0.00 0.00 0.00 4.79
30 31 1.490910 TCCATCAGGCTCTCTACGAGA 59.509 52.381 0.00 0.00 42.62 4.04
31 32 1.974265 TCCATCAGGCTCTCTACGAG 58.026 55.000 0.00 0.00 42.88 4.18
32 33 2.092375 TCTTCCATCAGGCTCTCTACGA 60.092 50.000 0.00 0.00 33.74 3.43
33 34 2.034053 GTCTTCCATCAGGCTCTCTACG 59.966 54.545 0.00 0.00 33.74 3.51
34 35 3.295973 AGTCTTCCATCAGGCTCTCTAC 58.704 50.000 0.00 0.00 33.74 2.59
35 36 3.561143 GAGTCTTCCATCAGGCTCTCTA 58.439 50.000 0.00 0.00 41.61 2.43
36 37 2.387757 GAGTCTTCCATCAGGCTCTCT 58.612 52.381 0.00 0.00 41.61 3.10
37 38 1.066908 CGAGTCTTCCATCAGGCTCTC 59.933 57.143 1.14 0.00 42.52 3.20
38 39 1.110442 CGAGTCTTCCATCAGGCTCT 58.890 55.000 1.14 0.00 42.52 4.09
39 40 0.529555 GCGAGTCTTCCATCAGGCTC 60.530 60.000 0.00 0.00 41.45 4.70
40 41 1.519719 GCGAGTCTTCCATCAGGCT 59.480 57.895 0.00 0.00 33.74 4.58
41 42 1.522580 GGCGAGTCTTCCATCAGGC 60.523 63.158 0.00 0.00 33.74 4.85
42 43 0.250234 TTGGCGAGTCTTCCATCAGG 59.750 55.000 2.37 0.00 31.54 3.86
43 44 2.005451 CTTTGGCGAGTCTTCCATCAG 58.995 52.381 2.37 0.00 31.54 2.90
44 45 1.347707 ACTTTGGCGAGTCTTCCATCA 59.652 47.619 2.37 0.00 31.54 3.07
45 46 2.100605 ACTTTGGCGAGTCTTCCATC 57.899 50.000 2.37 0.00 31.54 3.51
46 47 2.832129 TCTACTTTGGCGAGTCTTCCAT 59.168 45.455 2.37 0.00 31.54 3.41
47 48 2.244695 TCTACTTTGGCGAGTCTTCCA 58.755 47.619 0.00 0.00 0.00 3.53
48 49 3.528597 ATCTACTTTGGCGAGTCTTCC 57.471 47.619 0.00 0.00 0.00 3.46
49 50 7.382759 CCTATTTATCTACTTTGGCGAGTCTTC 59.617 40.741 0.00 0.00 0.00 2.87
50 51 7.210873 CCTATTTATCTACTTTGGCGAGTCTT 58.789 38.462 0.00 0.00 0.00 3.01
51 52 6.239345 CCCTATTTATCTACTTTGGCGAGTCT 60.239 42.308 0.00 0.00 0.00 3.24
52 53 5.927115 CCCTATTTATCTACTTTGGCGAGTC 59.073 44.000 0.00 0.00 0.00 3.36
53 54 5.221661 CCCCTATTTATCTACTTTGGCGAGT 60.222 44.000 0.00 0.00 0.00 4.18
54 55 5.238583 CCCCTATTTATCTACTTTGGCGAG 58.761 45.833 0.00 0.00 0.00 5.03
55 56 4.504340 GCCCCTATTTATCTACTTTGGCGA 60.504 45.833 0.00 0.00 0.00 5.54
56 57 3.751698 GCCCCTATTTATCTACTTTGGCG 59.248 47.826 0.00 0.00 0.00 5.69
57 58 4.725490 TGCCCCTATTTATCTACTTTGGC 58.275 43.478 0.00 0.00 35.75 4.52
58 59 4.762251 GCTGCCCCTATTTATCTACTTTGG 59.238 45.833 0.00 0.00 0.00 3.28
59 60 4.452455 CGCTGCCCCTATTTATCTACTTTG 59.548 45.833 0.00 0.00 0.00 2.77
69 70 0.178990 GATTCCCGCTGCCCCTATTT 60.179 55.000 0.00 0.00 0.00 1.40
82 83 2.770164 CCATCCTATGGTCGATTCCC 57.230 55.000 0.00 0.00 45.54 3.97
116 117 0.251354 CCACAGTGGCTAGCATCAGT 59.749 55.000 18.24 6.27 0.00 3.41
150 151 4.168014 CGTCGCAACATACTAGGTTAACA 58.832 43.478 8.10 0.00 0.00 2.41
162 163 3.021269 TCTTCAACTACGTCGCAACAT 57.979 42.857 0.00 0.00 0.00 2.71
165 166 4.567558 TCTTTTTCTTCAACTACGTCGCAA 59.432 37.500 0.00 0.00 0.00 4.85
207 208 9.639601 AGAAAACAAAACAAAACAAAAACCAAA 57.360 22.222 0.00 0.00 0.00 3.28
211 212 7.356881 GGCGAGAAAACAAAACAAAACAAAAAC 60.357 33.333 0.00 0.00 0.00 2.43
212 213 6.633234 GGCGAGAAAACAAAACAAAACAAAAA 59.367 30.769 0.00 0.00 0.00 1.94
213 214 6.136743 GGCGAGAAAACAAAACAAAACAAAA 58.863 32.000 0.00 0.00 0.00 2.44
214 215 5.236478 TGGCGAGAAAACAAAACAAAACAAA 59.764 32.000 0.00 0.00 0.00 2.83
215 216 4.750098 TGGCGAGAAAACAAAACAAAACAA 59.250 33.333 0.00 0.00 0.00 2.83
216 217 4.307432 TGGCGAGAAAACAAAACAAAACA 58.693 34.783 0.00 0.00 0.00 2.83
217 218 4.912528 TGGCGAGAAAACAAAACAAAAC 57.087 36.364 0.00 0.00 0.00 2.43
222 223 4.033932 AGCAAAATGGCGAGAAAACAAAAC 59.966 37.500 0.00 0.00 39.27 2.43
235 236 8.720562 ACAGATAAATAAACAAAGCAAAATGGC 58.279 29.630 0.00 0.00 0.00 4.40
319 341 8.610855 AGCTAGTAAAAACGAAAAAGAAACAC 57.389 30.769 0.00 0.00 0.00 3.32
441 468 3.126000 CACACACACACACACACACATAA 59.874 43.478 0.00 0.00 0.00 1.90
442 469 2.675348 CACACACACACACACACACATA 59.325 45.455 0.00 0.00 0.00 2.29
445 472 0.454285 GCACACACACACACACACAC 60.454 55.000 0.00 0.00 0.00 3.82
447 474 1.225991 CGCACACACACACACACAC 60.226 57.895 0.00 0.00 0.00 3.82
448 475 1.669437 ACGCACACACACACACACA 60.669 52.632 0.00 0.00 0.00 3.72
449 476 1.225991 CACGCACACACACACACAC 60.226 57.895 0.00 0.00 0.00 3.82
450 477 1.669437 ACACGCACACACACACACA 60.669 52.632 0.00 0.00 0.00 3.72
451 478 1.225991 CACACGCACACACACACAC 60.226 57.895 0.00 0.00 0.00 3.82
452 479 1.669437 ACACACGCACACACACACA 60.669 52.632 0.00 0.00 0.00 3.72
453 480 1.225991 CACACACGCACACACACAC 60.226 57.895 0.00 0.00 0.00 3.82
454 481 1.669437 ACACACACGCACACACACA 60.669 52.632 0.00 0.00 0.00 3.72
455 482 1.225991 CACACACACGCACACACAC 60.226 57.895 0.00 0.00 0.00 3.82
456 483 0.389948 TACACACACACGCACACACA 60.390 50.000 0.00 0.00 0.00 3.72
457 484 0.934496 ATACACACACACGCACACAC 59.066 50.000 0.00 0.00 0.00 3.82
458 485 1.202475 AGATACACACACACGCACACA 60.202 47.619 0.00 0.00 0.00 3.72
459 486 1.497991 AGATACACACACACGCACAC 58.502 50.000 0.00 0.00 0.00 3.82
460 487 3.372660 TTAGATACACACACACGCACA 57.627 42.857 0.00 0.00 0.00 4.57
461 488 4.860352 TGTATTAGATACACACACACGCAC 59.140 41.667 0.00 0.00 40.60 5.34
462 489 5.061920 TGTATTAGATACACACACACGCA 57.938 39.130 0.00 0.00 40.60 5.24
684 820 8.860780 ATGGTTGGCAATGTATTAAACAAAAT 57.139 26.923 1.92 0.00 42.70 1.82
685 821 8.682936 AATGGTTGGCAATGTATTAAACAAAA 57.317 26.923 1.92 0.00 42.70 2.44
686 822 8.682936 AAATGGTTGGCAATGTATTAAACAAA 57.317 26.923 1.92 0.00 42.70 2.83
687 823 9.950496 ATAAATGGTTGGCAATGTATTAAACAA 57.050 25.926 1.92 0.00 42.70 2.83
688 824 9.950496 AATAAATGGTTGGCAATGTATTAAACA 57.050 25.926 1.92 0.00 43.86 2.83
696 832 8.535335 TGTGTATAAATAAATGGTTGGCAATGT 58.465 29.630 1.92 0.00 0.00 2.71
697 833 8.939201 TGTGTATAAATAAATGGTTGGCAATG 57.061 30.769 1.92 0.00 0.00 2.82
699 835 9.950496 AAATGTGTATAAATAAATGGTTGGCAA 57.050 25.926 0.00 0.00 0.00 4.52
743 879 5.023533 AGACTCGCCTAAATGCTAATCAA 57.976 39.130 0.00 0.00 0.00 2.57
750 886 2.609916 GGAAGAAGACTCGCCTAAATGC 59.390 50.000 0.00 0.00 0.00 3.56
755 891 1.676529 CGATGGAAGAAGACTCGCCTA 59.323 52.381 0.00 0.00 0.00 3.93
790 926 3.303928 GGGCGCGGCTATACCTCT 61.304 66.667 32.30 0.00 35.61 3.69
864 1000 2.303022 CTGGAAGGCTGTACAAAGGAGA 59.697 50.000 0.00 0.00 0.00 3.71
889 1025 3.432051 GGAGCCATCCGACGGAGTG 62.432 68.421 22.99 18.42 36.85 3.51
890 1026 3.148279 GGAGCCATCCGACGGAGT 61.148 66.667 22.99 7.82 39.15 3.85
916 1052 1.618837 CAACTTCGTTCCTCCTCCTGA 59.381 52.381 0.00 0.00 0.00 3.86
952 1107 1.107945 CTCTCCTCTTCCGTTCCTCC 58.892 60.000 0.00 0.00 0.00 4.30
953 1108 1.107945 CCTCTCCTCTTCCGTTCCTC 58.892 60.000 0.00 0.00 0.00 3.71
954 1109 0.705253 TCCTCTCCTCTTCCGTTCCT 59.295 55.000 0.00 0.00 0.00 3.36
955 1110 1.783071 ATCCTCTCCTCTTCCGTTCC 58.217 55.000 0.00 0.00 0.00 3.62
956 1111 2.101750 GGAATCCTCTCCTCTTCCGTTC 59.898 54.545 0.00 0.00 32.21 3.95
957 1112 2.112190 GGAATCCTCTCCTCTTCCGTT 58.888 52.381 0.00 0.00 32.21 4.44
958 1113 1.289530 AGGAATCCTCTCCTCTTCCGT 59.710 52.381 0.00 0.00 42.53 4.69
959 1114 2.080654 AGGAATCCTCTCCTCTTCCG 57.919 55.000 0.00 0.00 42.53 4.30
1073 1228 3.083997 GGGACAGGGGTGAGCGAT 61.084 66.667 0.00 0.00 0.00 4.58
1085 1240 2.992689 TGAGGTAAGCGCGGGACA 60.993 61.111 8.83 0.00 0.00 4.02
1097 1252 0.621862 GGGATTGGAGGAGGTGAGGT 60.622 60.000 0.00 0.00 0.00 3.85
1149 1304 2.416162 CGACACAAGGAGAAGCTAGTCC 60.416 54.545 6.20 6.20 0.00 3.85
1150 1305 2.416162 CCGACACAAGGAGAAGCTAGTC 60.416 54.545 0.00 0.00 0.00 2.59
1151 1306 1.546476 CCGACACAAGGAGAAGCTAGT 59.454 52.381 0.00 0.00 0.00 2.57
1152 1307 1.819288 TCCGACACAAGGAGAAGCTAG 59.181 52.381 0.00 0.00 33.19 3.42
1153 1308 1.919240 TCCGACACAAGGAGAAGCTA 58.081 50.000 0.00 0.00 33.19 3.32
1154 1309 1.270907 ATCCGACACAAGGAGAAGCT 58.729 50.000 0.00 0.00 41.66 3.74
1176 1331 1.371337 CGCTTAGGCATTGCTGAGCA 61.371 55.000 21.84 1.40 38.60 4.26
1184 1339 1.269448 CAACACAACCGCTTAGGCATT 59.731 47.619 0.00 0.00 46.52 3.56
1195 1350 0.312102 GCAAGGAGAGCAACACAACC 59.688 55.000 0.00 0.00 0.00 3.77
1196 1351 1.002033 CTGCAAGGAGAGCAACACAAC 60.002 52.381 0.00 0.00 42.17 3.32
1197 1352 1.311859 CTGCAAGGAGAGCAACACAA 58.688 50.000 0.00 0.00 42.17 3.33
1199 1354 1.578423 GCTGCAAGGAGAGCAACAC 59.422 57.895 0.00 0.00 42.17 3.32
1200 1355 1.601759 GGCTGCAAGGAGAGCAACA 60.602 57.895 0.50 0.00 42.17 3.33
1202 1357 1.303074 CAGGCTGCAAGGAGAGCAA 60.303 57.895 0.00 0.00 42.17 3.91
1221 1381 3.057734 GCCTACGAAGATATGAAACCCG 58.942 50.000 0.00 0.00 0.00 5.28
1247 1407 1.413767 CGGAGCACGCACAGACATAC 61.414 60.000 0.00 0.00 34.82 2.39
1300 1460 0.036952 ACCTGTTCATCTCACCGCTG 60.037 55.000 0.00 0.00 0.00 5.18
1301 1461 0.687354 AACCTGTTCATCTCACCGCT 59.313 50.000 0.00 0.00 0.00 5.52
1302 1462 1.523758 AAACCTGTTCATCTCACCGC 58.476 50.000 0.00 0.00 0.00 5.68
1304 1464 3.058914 CACGAAAACCTGTTCATCTCACC 60.059 47.826 0.00 0.00 0.00 4.02
1305 1465 3.607078 GCACGAAAACCTGTTCATCTCAC 60.607 47.826 0.00 0.00 0.00 3.51
1306 1466 2.548057 GCACGAAAACCTGTTCATCTCA 59.452 45.455 0.00 0.00 0.00 3.27
1307 1467 2.808543 AGCACGAAAACCTGTTCATCTC 59.191 45.455 0.00 0.00 0.00 2.75
1308 1468 2.549754 CAGCACGAAAACCTGTTCATCT 59.450 45.455 0.00 0.00 0.00 2.90
1316 1493 2.555547 GCAGGCAGCACGAAAACCT 61.556 57.895 0.00 0.00 44.79 3.50
1415 1750 6.463049 GGAGTACCTAGATATTTGAAGCAGCA 60.463 42.308 0.00 0.00 0.00 4.41
1434 1769 6.264970 AGACTTATATTGAACCGAGGGAGTAC 59.735 42.308 0.00 0.00 0.00 2.73
1435 1770 6.371278 AGACTTATATTGAACCGAGGGAGTA 58.629 40.000 0.00 0.00 0.00 2.59
1436 1771 5.209659 AGACTTATATTGAACCGAGGGAGT 58.790 41.667 0.00 0.00 0.00 3.85
1437 1772 5.793030 AGACTTATATTGAACCGAGGGAG 57.207 43.478 0.00 0.00 0.00 4.30
1438 1773 6.555463 AAAGACTTATATTGAACCGAGGGA 57.445 37.500 0.00 0.00 0.00 4.20
1439 1774 7.441458 CCTAAAAGACTTATATTGAACCGAGGG 59.559 40.741 0.00 0.00 0.00 4.30
1440 1775 7.041984 GCCTAAAAGACTTATATTGAACCGAGG 60.042 40.741 0.00 0.00 0.00 4.63
1441 1776 7.494625 TGCCTAAAAGACTTATATTGAACCGAG 59.505 37.037 0.00 0.00 0.00 4.63
1442 1777 7.332557 TGCCTAAAAGACTTATATTGAACCGA 58.667 34.615 0.00 0.00 0.00 4.69
1443 1778 7.548196 TGCCTAAAAGACTTATATTGAACCG 57.452 36.000 0.00 0.00 0.00 4.44
1454 1789 8.870116 AGTCCATTTAAAATGCCTAAAAGACTT 58.130 29.630 0.00 0.00 35.02 3.01
1455 1790 8.422577 AGTCCATTTAAAATGCCTAAAAGACT 57.577 30.769 0.00 3.42 34.43 3.24
1456 1791 9.569167 GTAGTCCATTTAAAATGCCTAAAAGAC 57.431 33.333 0.00 1.44 31.82 3.01
1457 1792 9.303116 TGTAGTCCATTTAAAATGCCTAAAAGA 57.697 29.630 0.00 0.00 0.00 2.52
1458 1793 9.921637 TTGTAGTCCATTTAAAATGCCTAAAAG 57.078 29.630 0.00 0.00 0.00 2.27
1459 1794 9.699703 GTTGTAGTCCATTTAAAATGCCTAAAA 57.300 29.630 0.00 0.00 0.00 1.52
1460 1795 8.861086 TGTTGTAGTCCATTTAAAATGCCTAAA 58.139 29.630 0.00 0.00 0.00 1.85
1461 1796 8.410673 TGTTGTAGTCCATTTAAAATGCCTAA 57.589 30.769 0.00 0.00 0.00 2.69
1462 1797 8.588290 ATGTTGTAGTCCATTTAAAATGCCTA 57.412 30.769 0.00 0.00 0.00 3.93
1463 1798 6.909550 TGTTGTAGTCCATTTAAAATGCCT 57.090 33.333 0.00 0.00 0.00 4.75
1464 1799 7.431084 CGTATGTTGTAGTCCATTTAAAATGCC 59.569 37.037 0.00 0.00 0.00 4.40
1465 1800 7.431084 CCGTATGTTGTAGTCCATTTAAAATGC 59.569 37.037 0.00 0.00 0.00 3.56
1466 1801 8.670135 TCCGTATGTTGTAGTCCATTTAAAATG 58.330 33.333 0.00 0.00 0.00 2.32
1467 1802 8.795842 TCCGTATGTTGTAGTCCATTTAAAAT 57.204 30.769 0.00 0.00 0.00 1.82
1468 1803 8.670135 CATCCGTATGTTGTAGTCCATTTAAAA 58.330 33.333 0.00 0.00 0.00 1.52
1469 1804 7.825270 ACATCCGTATGTTGTAGTCCATTTAAA 59.175 33.333 0.00 0.00 44.07 1.52
1470 1805 7.332557 ACATCCGTATGTTGTAGTCCATTTAA 58.667 34.615 0.00 0.00 44.07 1.52
1471 1806 6.880484 ACATCCGTATGTTGTAGTCCATTTA 58.120 36.000 0.00 0.00 44.07 1.40
1472 1807 5.741011 ACATCCGTATGTTGTAGTCCATTT 58.259 37.500 0.00 0.00 44.07 2.32
1473 1808 5.353394 ACATCCGTATGTTGTAGTCCATT 57.647 39.130 0.00 0.00 44.07 3.16
1474 1809 6.455647 CATACATCCGTATGTTGTAGTCCAT 58.544 40.000 0.00 0.00 46.70 3.41
1475 1810 5.838529 CATACATCCGTATGTTGTAGTCCA 58.161 41.667 0.00 0.00 46.70 4.02
1512 1847 7.756722 CGGAGCAAAATGAATGAATCTAAACTT 59.243 33.333 0.00 0.00 0.00 2.66
1513 1848 7.094205 ACGGAGCAAAATGAATGAATCTAAACT 60.094 33.333 0.00 0.00 0.00 2.66
1514 1849 7.029563 ACGGAGCAAAATGAATGAATCTAAAC 58.970 34.615 0.00 0.00 0.00 2.01
1515 1850 7.156876 ACGGAGCAAAATGAATGAATCTAAA 57.843 32.000 0.00 0.00 0.00 1.85
1516 1851 6.757897 ACGGAGCAAAATGAATGAATCTAA 57.242 33.333 0.00 0.00 0.00 2.10
1517 1852 7.498900 ACATACGGAGCAAAATGAATGAATCTA 59.501 33.333 0.00 0.00 0.00 1.98
1518 1853 6.319658 ACATACGGAGCAAAATGAATGAATCT 59.680 34.615 0.00 0.00 0.00 2.40
1519 1854 6.498304 ACATACGGAGCAAAATGAATGAATC 58.502 36.000 0.00 0.00 0.00 2.52
1520 1855 6.455360 ACATACGGAGCAAAATGAATGAAT 57.545 33.333 0.00 0.00 0.00 2.57
1521 1856 5.895636 ACATACGGAGCAAAATGAATGAA 57.104 34.783 0.00 0.00 0.00 2.57
1522 1857 6.112734 ACTACATACGGAGCAAAATGAATGA 58.887 36.000 0.00 0.00 0.00 2.57
1523 1858 6.037062 TGACTACATACGGAGCAAAATGAATG 59.963 38.462 0.00 0.00 0.00 2.67
1524 1859 6.112734 TGACTACATACGGAGCAAAATGAAT 58.887 36.000 0.00 0.00 0.00 2.57
1525 1860 5.483811 TGACTACATACGGAGCAAAATGAA 58.516 37.500 0.00 0.00 0.00 2.57
1526 1861 5.079689 TGACTACATACGGAGCAAAATGA 57.920 39.130 0.00 0.00 0.00 2.57
1527 1862 5.991328 ATGACTACATACGGAGCAAAATG 57.009 39.130 0.00 0.00 34.71 2.32
1528 1863 6.374333 ACAAATGACTACATACGGAGCAAAAT 59.626 34.615 0.00 0.00 35.50 1.82
1529 1864 5.703592 ACAAATGACTACATACGGAGCAAAA 59.296 36.000 0.00 0.00 35.50 2.44
1530 1865 5.242434 ACAAATGACTACATACGGAGCAAA 58.758 37.500 0.00 0.00 35.50 3.68
1531 1866 4.827692 ACAAATGACTACATACGGAGCAA 58.172 39.130 0.00 0.00 35.50 3.91
1532 1867 4.465632 ACAAATGACTACATACGGAGCA 57.534 40.909 0.00 0.00 35.50 4.26
1533 1868 4.034048 CCAACAAATGACTACATACGGAGC 59.966 45.833 0.00 0.00 35.50 4.70
1534 1869 5.416083 TCCAACAAATGACTACATACGGAG 58.584 41.667 0.00 0.00 35.50 4.63
1535 1870 5.408880 TCCAACAAATGACTACATACGGA 57.591 39.130 0.00 0.00 35.50 4.69
1536 1871 6.093495 ACATTCCAACAAATGACTACATACGG 59.907 38.462 3.78 0.00 38.64 4.02
1537 1872 7.064609 AGACATTCCAACAAATGACTACATACG 59.935 37.037 3.78 0.00 39.00 3.06
1538 1873 8.268850 AGACATTCCAACAAATGACTACATAC 57.731 34.615 3.78 0.00 39.00 2.39
1539 1874 9.599866 CTAGACATTCCAACAAATGACTACATA 57.400 33.333 3.78 0.00 40.45 2.29
1540 1875 8.321353 TCTAGACATTCCAACAAATGACTACAT 58.679 33.333 3.78 0.00 40.45 2.29
1541 1876 7.676004 TCTAGACATTCCAACAAATGACTACA 58.324 34.615 3.78 0.00 40.45 2.74
1542 1877 8.547967 TTCTAGACATTCCAACAAATGACTAC 57.452 34.615 0.00 0.00 40.45 2.73
1543 1878 9.219603 CTTTCTAGACATTCCAACAAATGACTA 57.780 33.333 0.00 6.23 40.45 2.59
1544 1879 7.939039 TCTTTCTAGACATTCCAACAAATGACT 59.061 33.333 0.00 5.46 41.93 3.41
1545 1880 8.099364 TCTTTCTAGACATTCCAACAAATGAC 57.901 34.615 0.00 0.00 38.64 3.06
1561 1896 8.202137 CCGTTCCCAAATATAAGTCTTTCTAGA 58.798 37.037 0.00 0.00 0.00 2.43
1562 1897 8.202137 TCCGTTCCCAAATATAAGTCTTTCTAG 58.798 37.037 0.00 0.00 0.00 2.43
1563 1898 8.081517 TCCGTTCCCAAATATAAGTCTTTCTA 57.918 34.615 0.00 0.00 0.00 2.10
1564 1899 6.954232 TCCGTTCCCAAATATAAGTCTTTCT 58.046 36.000 0.00 0.00 0.00 2.52
1565 1900 6.260271 CCTCCGTTCCCAAATATAAGTCTTTC 59.740 42.308 0.00 0.00 0.00 2.62
1566 1901 6.120220 CCTCCGTTCCCAAATATAAGTCTTT 58.880 40.000 0.00 0.00 0.00 2.52
1567 1902 5.397559 CCCTCCGTTCCCAAATATAAGTCTT 60.398 44.000 0.00 0.00 0.00 3.01
1568 1903 4.102681 CCCTCCGTTCCCAAATATAAGTCT 59.897 45.833 0.00 0.00 0.00 3.24
1569 1904 4.102054 TCCCTCCGTTCCCAAATATAAGTC 59.898 45.833 0.00 0.00 0.00 3.01
1570 1905 4.042174 TCCCTCCGTTCCCAAATATAAGT 58.958 43.478 0.00 0.00 0.00 2.24
1571 1906 4.699925 TCCCTCCGTTCCCAAATATAAG 57.300 45.455 0.00 0.00 0.00 1.73
1572 1907 5.656549 AATCCCTCCGTTCCCAAATATAA 57.343 39.130 0.00 0.00 0.00 0.98
1573 1908 5.847817 AGTAATCCCTCCGTTCCCAAATATA 59.152 40.000 0.00 0.00 0.00 0.86
1574 1909 4.663592 AGTAATCCCTCCGTTCCCAAATAT 59.336 41.667 0.00 0.00 0.00 1.28
1575 1910 4.042174 AGTAATCCCTCCGTTCCCAAATA 58.958 43.478 0.00 0.00 0.00 1.40
1576 1911 2.850568 AGTAATCCCTCCGTTCCCAAAT 59.149 45.455 0.00 0.00 0.00 2.32
1577 1912 2.271777 AGTAATCCCTCCGTTCCCAAA 58.728 47.619 0.00 0.00 0.00 3.28
1578 1913 1.961133 AGTAATCCCTCCGTTCCCAA 58.039 50.000 0.00 0.00 0.00 4.12
1579 1914 2.023695 ACTAGTAATCCCTCCGTTCCCA 60.024 50.000 0.00 0.00 0.00 4.37
1580 1915 2.675583 ACTAGTAATCCCTCCGTTCCC 58.324 52.381 0.00 0.00 0.00 3.97
1581 1916 5.362143 AGTTAACTAGTAATCCCTCCGTTCC 59.638 44.000 6.26 0.00 0.00 3.62
1582 1917 6.462552 AGTTAACTAGTAATCCCTCCGTTC 57.537 41.667 6.26 0.00 0.00 3.95
1583 1918 7.961326 TTAGTTAACTAGTAATCCCTCCGTT 57.039 36.000 14.73 0.00 0.00 4.44
1584 1919 8.544687 AATTAGTTAACTAGTAATCCCTCCGT 57.455 34.615 14.73 0.00 32.37 4.69
1585 1920 9.905171 GTAATTAGTTAACTAGTAATCCCTCCG 57.095 37.037 14.73 0.00 32.37 4.63
1612 2008 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
1613 2009 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
1614 2010 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
1615 2011 5.427481 AGTTATCTATTTTGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
1616 2012 5.681639 AGTTATCTATTTTGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
1617 2013 6.346096 TGAGTTATCTATTTTGGAACGGAGG 58.654 40.000 0.00 0.00 0.00 4.30
1618 2014 7.549488 AGTTGAGTTATCTATTTTGGAACGGAG 59.451 37.037 0.00 0.00 0.00 4.63
1619 2015 7.391620 AGTTGAGTTATCTATTTTGGAACGGA 58.608 34.615 0.00 0.00 0.00 4.69
1620 2016 7.611213 AGTTGAGTTATCTATTTTGGAACGG 57.389 36.000 0.00 0.00 0.00 4.44
1621 2017 9.329913 CAAAGTTGAGTTATCTATTTTGGAACG 57.670 33.333 0.00 0.00 35.65 3.95
1690 2086 8.802267 TGATTCGTTAAAATGGATCTTTTTCCT 58.198 29.630 9.28 0.00 36.68 3.36
1691 2087 8.860128 GTGATTCGTTAAAATGGATCTTTTTCC 58.140 33.333 9.28 0.00 32.22 3.13
1692 2088 9.405587 TGTGATTCGTTAAAATGGATCTTTTTC 57.594 29.630 9.28 0.00 32.22 2.29
1693 2089 9.191995 GTGTGATTCGTTAAAATGGATCTTTTT 57.808 29.630 10.39 10.39 32.22 1.94
1694 2090 7.537306 CGTGTGATTCGTTAAAATGGATCTTTT 59.463 33.333 5.10 0.00 32.22 2.27
1695 2091 7.021196 CGTGTGATTCGTTAAAATGGATCTTT 58.979 34.615 5.10 0.00 32.22 2.52
1696 2092 6.148811 ACGTGTGATTCGTTAAAATGGATCTT 59.851 34.615 5.10 0.00 38.38 2.40
1697 2093 5.642063 ACGTGTGATTCGTTAAAATGGATCT 59.358 36.000 5.10 0.00 38.38 2.75
1698 2094 5.864986 ACGTGTGATTCGTTAAAATGGATC 58.135 37.500 0.00 0.00 38.38 3.36
1699 2095 5.873179 ACGTGTGATTCGTTAAAATGGAT 57.127 34.783 0.00 0.00 38.38 3.41
1700 2096 6.157904 TCTACGTGTGATTCGTTAAAATGGA 58.842 36.000 0.00 0.00 41.72 3.41
1701 2097 6.309494 TCTCTACGTGTGATTCGTTAAAATGG 59.691 38.462 0.00 0.00 41.72 3.16
1702 2098 7.273188 TCTCTACGTGTGATTCGTTAAAATG 57.727 36.000 0.00 0.00 41.72 2.32
1703 2099 9.577110 TTATCTCTACGTGTGATTCGTTAAAAT 57.423 29.630 0.00 0.00 41.72 1.82
1704 2100 8.969121 TTATCTCTACGTGTGATTCGTTAAAA 57.031 30.769 0.00 0.00 41.72 1.52
1705 2101 8.969121 TTTATCTCTACGTGTGATTCGTTAAA 57.031 30.769 0.00 0.00 41.72 1.52
1706 2102 8.239314 ACTTTATCTCTACGTGTGATTCGTTAA 58.761 33.333 0.00 0.00 41.72 2.01
1707 2103 7.755591 ACTTTATCTCTACGTGTGATTCGTTA 58.244 34.615 0.00 0.00 41.72 3.18
1708 2104 6.618811 ACTTTATCTCTACGTGTGATTCGTT 58.381 36.000 0.00 0.00 41.72 3.85
1709 2105 6.192234 ACTTTATCTCTACGTGTGATTCGT 57.808 37.500 0.00 0.00 43.86 3.85
1710 2106 6.020599 CCAACTTTATCTCTACGTGTGATTCG 60.021 42.308 0.00 0.00 32.05 3.34
1711 2107 6.255887 CCCAACTTTATCTCTACGTGTGATTC 59.744 42.308 0.00 0.00 32.05 2.52
1712 2108 6.106673 CCCAACTTTATCTCTACGTGTGATT 58.893 40.000 0.00 0.00 32.05 2.57
1713 2109 5.187186 ACCCAACTTTATCTCTACGTGTGAT 59.813 40.000 0.00 1.56 33.92 3.06
1714 2110 4.525487 ACCCAACTTTATCTCTACGTGTGA 59.475 41.667 0.00 0.00 0.00 3.58
1715 2111 4.817517 ACCCAACTTTATCTCTACGTGTG 58.182 43.478 0.00 0.00 0.00 3.82
1716 2112 4.525487 TGACCCAACTTTATCTCTACGTGT 59.475 41.667 0.00 0.00 0.00 4.49
1717 2113 5.068234 TGACCCAACTTTATCTCTACGTG 57.932 43.478 0.00 0.00 0.00 4.49
1718 2114 5.657302 AGATGACCCAACTTTATCTCTACGT 59.343 40.000 0.00 0.00 0.00 3.57
1719 2115 6.150396 AGATGACCCAACTTTATCTCTACG 57.850 41.667 0.00 0.00 0.00 3.51
1722 2118 9.401058 CAAAATAGATGACCCAACTTTATCTCT 57.599 33.333 0.00 0.00 31.19 3.10
1723 2119 8.624776 CCAAAATAGATGACCCAACTTTATCTC 58.375 37.037 0.00 0.00 31.19 2.75
1724 2120 8.336235 TCCAAAATAGATGACCCAACTTTATCT 58.664 33.333 0.00 0.00 33.15 1.98
1725 2121 8.519799 TCCAAAATAGATGACCCAACTTTATC 57.480 34.615 0.00 0.00 0.00 1.75
1726 2122 8.749354 GTTCCAAAATAGATGACCCAACTTTAT 58.251 33.333 0.00 0.00 0.00 1.40
1727 2123 7.094549 CGTTCCAAAATAGATGACCCAACTTTA 60.095 37.037 0.00 0.00 0.00 1.85
1728 2124 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
1729 2125 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
1730 2126 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
1731 2127 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
1732 2128 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
1733 2129 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
1734 2130 3.881220 TCCGTTCCAAAATAGATGACCC 58.119 45.455 0.00 0.00 0.00 4.46
1735 2131 4.335594 CCTTCCGTTCCAAAATAGATGACC 59.664 45.833 0.00 0.00 0.00 4.02
1736 2132 5.183228 TCCTTCCGTTCCAAAATAGATGAC 58.817 41.667 0.00 0.00 0.00 3.06
1737 2133 5.045869 ACTCCTTCCGTTCCAAAATAGATGA 60.046 40.000 0.00 0.00 0.00 2.92
1738 2134 5.186198 ACTCCTTCCGTTCCAAAATAGATG 58.814 41.667 0.00 0.00 0.00 2.90
1739 2135 5.437191 ACTCCTTCCGTTCCAAAATAGAT 57.563 39.130 0.00 0.00 0.00 1.98
1740 2136 4.903045 ACTCCTTCCGTTCCAAAATAGA 57.097 40.909 0.00 0.00 0.00 1.98
1741 2137 5.105064 TCCTACTCCTTCCGTTCCAAAATAG 60.105 44.000 0.00 0.00 0.00 1.73
1742 2138 4.778958 TCCTACTCCTTCCGTTCCAAAATA 59.221 41.667 0.00 0.00 0.00 1.40
1743 2139 3.585732 TCCTACTCCTTCCGTTCCAAAAT 59.414 43.478 0.00 0.00 0.00 1.82
1744 2140 2.974099 TCCTACTCCTTCCGTTCCAAAA 59.026 45.455 0.00 0.00 0.00 2.44
1745 2141 2.301009 GTCCTACTCCTTCCGTTCCAAA 59.699 50.000 0.00 0.00 0.00 3.28
1746 2142 1.897802 GTCCTACTCCTTCCGTTCCAA 59.102 52.381 0.00 0.00 0.00 3.53
1747 2143 1.076677 AGTCCTACTCCTTCCGTTCCA 59.923 52.381 0.00 0.00 0.00 3.53
1748 2144 1.849977 AGTCCTACTCCTTCCGTTCC 58.150 55.000 0.00 0.00 0.00 3.62
1749 2145 3.586892 CAAAGTCCTACTCCTTCCGTTC 58.413 50.000 0.00 0.00 0.00 3.95
1750 2146 2.302157 CCAAAGTCCTACTCCTTCCGTT 59.698 50.000 0.00 0.00 0.00 4.44
1751 2147 1.900486 CCAAAGTCCTACTCCTTCCGT 59.100 52.381 0.00 0.00 0.00 4.69
1752 2148 2.094130 GTCCAAAGTCCTACTCCTTCCG 60.094 54.545 0.00 0.00 0.00 4.30
1753 2149 2.236644 GGTCCAAAGTCCTACTCCTTCC 59.763 54.545 0.00 0.00 0.00 3.46
1754 2150 3.055747 CAGGTCCAAAGTCCTACTCCTTC 60.056 52.174 0.00 0.00 29.57 3.46
1755 2151 2.907042 CAGGTCCAAAGTCCTACTCCTT 59.093 50.000 0.00 0.00 29.57 3.36
1756 2152 2.111972 TCAGGTCCAAAGTCCTACTCCT 59.888 50.000 0.00 0.00 29.57 3.69
1757 2153 2.537143 TCAGGTCCAAAGTCCTACTCC 58.463 52.381 0.00 0.00 29.57 3.85
1758 2154 4.618920 TTTCAGGTCCAAAGTCCTACTC 57.381 45.455 0.00 0.00 29.57 2.59
1759 2155 5.546499 TGTATTTCAGGTCCAAAGTCCTACT 59.454 40.000 0.00 0.00 29.57 2.57
1760 2156 5.801380 TGTATTTCAGGTCCAAAGTCCTAC 58.199 41.667 0.00 0.00 29.57 3.18
1814 2216 2.146342 CCAGTGAGTTGACACATGGAC 58.854 52.381 0.00 0.00 42.45 4.02
2059 2723 9.936759 AAGTACAAAACTGAAAGAATGGAAAAA 57.063 25.926 0.00 0.00 38.88 1.94
2121 2785 6.704289 ACATTGCTGCATGAGTATTATGTT 57.296 33.333 1.84 0.00 0.00 2.71
2133 2797 4.339872 TTTGAAAGGAACATTGCTGCAT 57.660 36.364 1.84 0.00 0.00 3.96
2281 3214 7.169308 TCGAGAACAAGAGTTATTTCTGTTCAC 59.831 37.037 13.84 7.92 38.30 3.18
2463 3397 6.441093 TCAAAACTAGCTTCCTGCAATATG 57.559 37.500 0.00 0.00 45.94 1.78
2624 3560 7.461182 TGCTGGCTGTACAAATTAAGTAAAT 57.539 32.000 0.00 0.00 0.00 1.40
2625 3561 6.569610 GCTGCTGGCTGTACAAATTAAGTAAA 60.570 38.462 0.00 0.00 38.06 2.01
2745 3689 8.960591 AGTGCATGTTAGAAAATAATAAGCAGT 58.039 29.630 0.00 0.00 0.00 4.40
2751 3695 7.967854 GTGTGCAGTGCATGTTAGAAAATAATA 59.032 33.333 22.87 0.00 41.91 0.98
3143 4112 6.368791 GCGAATATCATACAATTAGTGCCAGA 59.631 38.462 0.00 0.00 0.00 3.86
3173 4142 5.263599 TGGGAGCAAAGAATGATGTGTATT 58.736 37.500 0.00 0.00 0.00 1.89
3231 4270 4.260170 ACAAGAGAAAGAGATGATGGCAC 58.740 43.478 0.00 0.00 0.00 5.01
3234 4273 6.315891 GGAAGAACAAGAGAAAGAGATGATGG 59.684 42.308 0.00 0.00 0.00 3.51
3414 4651 3.028850 ACATACCCGGAGATCGAAGAAA 58.971 45.455 0.73 0.00 43.58 2.52
3603 4841 0.608035 TCGTTGATGGGCTTTGGTCC 60.608 55.000 0.00 0.00 37.81 4.46
3690 4928 4.081531 TCCCTTGCATTGCTTAATTCCTTG 60.082 41.667 10.49 0.00 0.00 3.61
3697 4937 6.788598 TGATATTTCCCTTGCATTGCTTAA 57.211 33.333 10.49 0.00 0.00 1.85
3776 5016 2.747855 CAACAGCGGGAGGAAGGC 60.748 66.667 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.