Multiple sequence alignment - TraesCS3B01G245500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G245500 chr3B 100.000 5642 0 0 1 5642 389314042 389308401 0.000000e+00 10419.0
1 TraesCS3B01G245500 chr3B 88.651 1075 104 12 4577 5642 734499352 734500417 0.000000e+00 1293.0
2 TraesCS3B01G245500 chr3D 93.887 1505 49 10 817 2308 295153290 295151816 0.000000e+00 2230.0
3 TraesCS3B01G245500 chr3D 90.491 957 81 5 4690 5642 260465064 260464114 0.000000e+00 1254.0
4 TraesCS3B01G245500 chr3D 88.332 1097 61 29 3201 4270 295150795 295149739 0.000000e+00 1254.0
5 TraesCS3B01G245500 chr3D 90.793 391 18 10 2827 3199 295151339 295150949 1.810000e-139 507.0
6 TraesCS3B01G245500 chr3D 86.600 403 28 15 2356 2743 295151813 295151422 6.760000e-114 422.0
7 TraesCS3B01G245500 chr3D 85.921 277 27 4 4255 4530 295149488 295149223 9.250000e-73 285.0
8 TraesCS3B01G245500 chr3A 93.852 1464 55 12 866 2308 393106706 393105257 0.000000e+00 2172.0
9 TraesCS3B01G245500 chr3A 91.536 827 44 8 3286 4108 393104053 393103249 0.000000e+00 1116.0
10 TraesCS3B01G245500 chr3A 96.599 294 4 3 2903 3195 393104678 393104390 3.060000e-132 483.0
11 TraesCS3B01G245500 chr3A 86.352 403 29 15 2356 2743 393105254 393104863 3.140000e-112 416.0
12 TraesCS3B01G245500 chr3A 84.971 173 13 6 4111 4270 393103214 393103042 4.520000e-36 163.0
13 TraesCS3B01G245500 chr3A 90.000 80 8 0 2827 2906 393104780 393104701 2.780000e-18 104.0
14 TraesCS3B01G245500 chr3A 94.545 55 2 1 3201 3255 393104228 393104175 3.620000e-12 84.2
15 TraesCS3B01G245500 chr7D 89.498 1095 82 10 4575 5642 164485000 164483912 0.000000e+00 1354.0
16 TraesCS3B01G245500 chr7D 80.491 692 127 7 49 738 173104137 173103452 1.800000e-144 523.0
17 TraesCS3B01G245500 chr1B 88.605 1097 99 12 4569 5642 19202283 19203376 0.000000e+00 1310.0
18 TraesCS3B01G245500 chr7B 88.395 1103 96 12 4569 5642 686135748 686136847 0.000000e+00 1299.0
19 TraesCS3B01G245500 chr4B 91.109 956 76 5 4690 5642 418755841 418756790 0.000000e+00 1286.0
20 TraesCS3B01G245500 chr2D 91.004 956 74 6 4690 5642 526520951 526521897 0.000000e+00 1279.0
21 TraesCS3B01G245500 chr5D 90.900 956 78 3 4690 5642 394843597 394844546 0.000000e+00 1275.0
22 TraesCS3B01G245500 chr5D 91.188 749 58 5 1 749 540547390 540546650 0.000000e+00 1011.0
23 TraesCS3B01G245500 chr5D 83.085 739 111 12 1 738 36542240 36542965 0.000000e+00 660.0
24 TraesCS3B01G245500 chr6D 88.022 1102 96 16 4569 5642 404320305 404321398 0.000000e+00 1271.0
25 TraesCS3B01G245500 chr6B 91.031 747 59 4 3 749 603862335 603863073 0.000000e+00 1002.0
26 TraesCS3B01G245500 chr1A 90.000 750 65 7 1 749 529989421 529988681 0.000000e+00 961.0
27 TraesCS3B01G245500 chr5A 88.165 752 75 10 1 749 272940420 272939680 0.000000e+00 883.0
28 TraesCS3B01G245500 chr5A 87.717 749 82 7 1 749 669980708 669981446 0.000000e+00 865.0
29 TraesCS3B01G245500 chr2A 85.792 739 95 7 1 738 38685773 38685044 0.000000e+00 774.0
30 TraesCS3B01G245500 chr1D 81.992 733 114 14 1 730 26482670 26483387 1.740000e-169 606.0
31 TraesCS3B01G245500 chr7A 86.036 444 54 4 4 447 651855596 651855161 2.380000e-128 470.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G245500 chr3B 389308401 389314042 5641 True 10419.000000 10419 100.000000 1 5642 1 chr3B.!!$R1 5641
1 TraesCS3B01G245500 chr3B 734499352 734500417 1065 False 1293.000000 1293 88.651000 4577 5642 1 chr3B.!!$F1 1065
2 TraesCS3B01G245500 chr3D 260464114 260465064 950 True 1254.000000 1254 90.491000 4690 5642 1 chr3D.!!$R1 952
3 TraesCS3B01G245500 chr3D 295149223 295153290 4067 True 939.600000 2230 89.106600 817 4530 5 chr3D.!!$R2 3713
4 TraesCS3B01G245500 chr3A 393103042 393106706 3664 True 648.314286 2172 91.122143 866 4270 7 chr3A.!!$R1 3404
5 TraesCS3B01G245500 chr7D 164483912 164485000 1088 True 1354.000000 1354 89.498000 4575 5642 1 chr7D.!!$R1 1067
6 TraesCS3B01G245500 chr7D 173103452 173104137 685 True 523.000000 523 80.491000 49 738 1 chr7D.!!$R2 689
7 TraesCS3B01G245500 chr1B 19202283 19203376 1093 False 1310.000000 1310 88.605000 4569 5642 1 chr1B.!!$F1 1073
8 TraesCS3B01G245500 chr7B 686135748 686136847 1099 False 1299.000000 1299 88.395000 4569 5642 1 chr7B.!!$F1 1073
9 TraesCS3B01G245500 chr4B 418755841 418756790 949 False 1286.000000 1286 91.109000 4690 5642 1 chr4B.!!$F1 952
10 TraesCS3B01G245500 chr2D 526520951 526521897 946 False 1279.000000 1279 91.004000 4690 5642 1 chr2D.!!$F1 952
11 TraesCS3B01G245500 chr5D 394843597 394844546 949 False 1275.000000 1275 90.900000 4690 5642 1 chr5D.!!$F2 952
12 TraesCS3B01G245500 chr5D 540546650 540547390 740 True 1011.000000 1011 91.188000 1 749 1 chr5D.!!$R1 748
13 TraesCS3B01G245500 chr5D 36542240 36542965 725 False 660.000000 660 83.085000 1 738 1 chr5D.!!$F1 737
14 TraesCS3B01G245500 chr6D 404320305 404321398 1093 False 1271.000000 1271 88.022000 4569 5642 1 chr6D.!!$F1 1073
15 TraesCS3B01G245500 chr6B 603862335 603863073 738 False 1002.000000 1002 91.031000 3 749 1 chr6B.!!$F1 746
16 TraesCS3B01G245500 chr1A 529988681 529989421 740 True 961.000000 961 90.000000 1 749 1 chr1A.!!$R1 748
17 TraesCS3B01G245500 chr5A 272939680 272940420 740 True 883.000000 883 88.165000 1 749 1 chr5A.!!$R1 748
18 TraesCS3B01G245500 chr5A 669980708 669981446 738 False 865.000000 865 87.717000 1 749 1 chr5A.!!$F1 748
19 TraesCS3B01G245500 chr2A 38685044 38685773 729 True 774.000000 774 85.792000 1 738 1 chr2A.!!$R1 737
20 TraesCS3B01G245500 chr1D 26482670 26483387 717 False 606.000000 606 81.992000 1 730 1 chr1D.!!$F1 729

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
422 423 0.036952 CTCAGCAACCTCGGACACAT 60.037 55.0 0.00 0.0 0.00 3.21 F
752 753 0.178767 ATGATAGCTTGCGCCAGTGA 59.821 50.0 10.52 0.0 36.60 3.41 F
2256 2284 0.106369 TCGATGGGACGATAGGTGGT 60.106 55.0 0.00 0.0 43.77 4.16 F
3245 3529 0.249741 ACCGCAGTTTGCTAACGAGT 60.250 50.0 5.38 0.0 42.25 4.18 F
3891 4277 0.035056 AGCCAGCGCTTCAAGGTTAT 60.035 50.0 7.50 0.0 45.55 1.89 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1536 1549 0.107654 GTCCTCCTCCACCATTTCCG 60.108 60.0 0.0 0.0 0.00 4.30 R
2721 2770 0.310854 GGGAGCAACCAAACGAACTG 59.689 55.0 0.0 0.0 41.20 3.16 R
3759 4142 0.033208 TTTTAGATGCTGGGCCTGGG 60.033 55.0 12.7 0.0 0.00 4.45 R
4358 5055 0.111832 TGTGGGACTACAGACGGACT 59.888 55.0 0.0 0.0 0.00 3.85 R
5155 5890 0.668535 GGTTCTTTGCTTTCAGCCGT 59.331 50.0 0.0 0.0 41.51 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 1.048601 AAAGCACTGGGAGACTCGAA 58.951 50.000 0.00 0.00 0.00 3.71
41 42 1.048601 AAGCACTGGGAGACTCGAAA 58.951 50.000 0.00 0.00 0.00 3.46
42 43 1.048601 AGCACTGGGAGACTCGAAAA 58.951 50.000 0.00 0.00 0.00 2.29
43 44 1.416401 AGCACTGGGAGACTCGAAAAA 59.584 47.619 0.00 0.00 0.00 1.94
44 45 1.531578 GCACTGGGAGACTCGAAAAAC 59.468 52.381 0.00 0.00 0.00 2.43
45 46 2.833794 CACTGGGAGACTCGAAAAACA 58.166 47.619 0.00 0.00 0.00 2.83
46 47 3.403038 CACTGGGAGACTCGAAAAACAT 58.597 45.455 0.00 0.00 0.00 2.71
47 48 3.433615 CACTGGGAGACTCGAAAAACATC 59.566 47.826 0.00 0.00 0.00 3.06
92 93 2.237643 ACGCCATAAATAGTCACACCCA 59.762 45.455 0.00 0.00 0.00 4.51
103 104 0.888736 TCACACCCAGCAATGGTTCG 60.889 55.000 0.00 0.00 32.46 3.95
239 240 1.209504 TCTCTTTCTTACGGGCCCATG 59.790 52.381 24.92 9.21 0.00 3.66
422 423 0.036952 CTCAGCAACCTCGGACACAT 60.037 55.000 0.00 0.00 0.00 3.21
560 561 2.289444 CCTCTCGGAAGGCTGTAAAACA 60.289 50.000 0.00 0.00 0.00 2.83
596 597 0.250209 ATCGCTCTGCCAAGCATAGG 60.250 55.000 8.02 0.00 42.62 2.57
627 628 1.081041 CCGATGACGACGAACCACA 60.081 57.895 0.00 0.00 42.66 4.17
633 634 1.000052 TGACGACGAACCACAATGCTA 60.000 47.619 0.00 0.00 0.00 3.49
667 668 1.542030 GCATCATATCCGTCGTCTCCT 59.458 52.381 0.00 0.00 0.00 3.69
749 750 0.877649 ACGATGATAGCTTGCGCCAG 60.878 55.000 4.18 3.91 36.60 4.85
750 751 0.877649 CGATGATAGCTTGCGCCAGT 60.878 55.000 10.52 0.00 36.60 4.00
751 752 0.585357 GATGATAGCTTGCGCCAGTG 59.415 55.000 10.52 0.00 36.60 3.66
752 753 0.178767 ATGATAGCTTGCGCCAGTGA 59.821 50.000 10.52 0.00 36.60 3.41
753 754 0.460811 TGATAGCTTGCGCCAGTGAG 60.461 55.000 10.52 0.00 36.60 3.51
754 755 1.153289 ATAGCTTGCGCCAGTGAGG 60.153 57.895 10.52 0.00 41.84 3.86
755 756 1.617018 ATAGCTTGCGCCAGTGAGGA 61.617 55.000 10.52 0.00 41.22 3.71
756 757 1.617018 TAGCTTGCGCCAGTGAGGAT 61.617 55.000 10.52 0.00 41.22 3.24
757 758 2.758089 GCTTGCGCCAGTGAGGATG 61.758 63.158 10.52 0.00 41.22 3.51
758 759 2.046023 TTGCGCCAGTGAGGATGG 60.046 61.111 4.18 0.00 41.22 3.51
763 764 3.303189 CCAGTGAGGATGGCGACT 58.697 61.111 0.00 0.00 41.22 4.18
764 765 1.153489 CCAGTGAGGATGGCGACTG 60.153 63.158 0.00 0.00 41.22 3.51
765 766 1.607801 CCAGTGAGGATGGCGACTGA 61.608 60.000 0.00 0.00 41.22 3.41
766 767 0.247460 CAGTGAGGATGGCGACTGAA 59.753 55.000 0.00 0.00 38.49 3.02
767 768 0.534412 AGTGAGGATGGCGACTGAAG 59.466 55.000 0.00 0.00 0.00 3.02
768 769 0.460987 GTGAGGATGGCGACTGAAGG 60.461 60.000 0.00 0.00 0.00 3.46
769 770 1.144936 GAGGATGGCGACTGAAGGG 59.855 63.158 0.00 0.00 0.00 3.95
770 771 2.190578 GGATGGCGACTGAAGGGG 59.809 66.667 0.00 0.00 0.00 4.79
771 772 2.670148 GGATGGCGACTGAAGGGGT 61.670 63.158 0.00 0.00 0.00 4.95
772 773 1.450312 GATGGCGACTGAAGGGGTG 60.450 63.158 0.00 0.00 0.00 4.61
773 774 1.899437 GATGGCGACTGAAGGGGTGA 61.899 60.000 0.00 0.00 0.00 4.02
774 775 2.047179 GGCGACTGAAGGGGTGAC 60.047 66.667 0.00 0.00 0.00 3.67
775 776 2.584391 GGCGACTGAAGGGGTGACT 61.584 63.158 0.00 0.00 0.00 3.41
776 777 1.374758 GCGACTGAAGGGGTGACTG 60.375 63.158 0.00 0.00 0.00 3.51
777 778 1.816863 GCGACTGAAGGGGTGACTGA 61.817 60.000 0.00 0.00 0.00 3.41
778 779 0.244994 CGACTGAAGGGGTGACTGAG 59.755 60.000 0.00 0.00 0.00 3.35
779 780 0.610687 GACTGAAGGGGTGACTGAGG 59.389 60.000 0.00 0.00 0.00 3.86
780 781 0.838122 ACTGAAGGGGTGACTGAGGG 60.838 60.000 0.00 0.00 0.00 4.30
781 782 1.538876 TGAAGGGGTGACTGAGGGG 60.539 63.158 0.00 0.00 0.00 4.79
782 783 2.204151 AAGGGGTGACTGAGGGGG 60.204 66.667 0.00 0.00 0.00 5.40
786 787 4.083862 GGTGACTGAGGGGGCGAC 62.084 72.222 0.00 0.00 0.00 5.19
787 788 4.436998 GTGACTGAGGGGGCGACG 62.437 72.222 0.00 0.00 0.00 5.12
810 811 4.500265 GGCACCCTTTGAGCTGAA 57.500 55.556 0.00 0.00 0.00 3.02
811 812 2.261215 GGCACCCTTTGAGCTGAAG 58.739 57.895 0.00 0.00 0.00 3.02
812 813 0.250901 GGCACCCTTTGAGCTGAAGA 60.251 55.000 0.00 0.00 0.00 2.87
813 814 0.877743 GCACCCTTTGAGCTGAAGAC 59.122 55.000 0.00 0.00 0.00 3.01
814 815 1.815408 GCACCCTTTGAGCTGAAGACA 60.815 52.381 0.00 0.00 0.00 3.41
815 816 1.876156 CACCCTTTGAGCTGAAGACAC 59.124 52.381 0.00 0.00 0.00 3.67
843 844 5.470777 GTCGTAGCTAGTCATACAGAAGGAT 59.529 44.000 0.00 0.00 0.00 3.24
934 935 4.038080 GCCCGACACGCCCAAAAG 62.038 66.667 0.00 0.00 0.00 2.27
941 942 1.737793 GACACGCCCAAAAGGTAGATG 59.262 52.381 0.00 0.00 38.26 2.90
1056 1057 4.012895 CGTTGCGTTCGCAGGCTT 62.013 61.111 18.64 0.00 42.40 4.35
1057 1058 2.127232 GTTGCGTTCGCAGGCTTC 60.127 61.111 18.64 6.38 42.40 3.86
1058 1059 2.280797 TTGCGTTCGCAGGCTTCT 60.281 55.556 18.64 0.00 42.40 2.85
1334 1338 2.002586 CACGAAGCTACCCATCACAAG 58.997 52.381 0.00 0.00 0.00 3.16
1380 1393 4.058124 GCAAGTTTCTTGGTTTGATTCCC 58.942 43.478 10.76 0.00 0.00 3.97
1404 1417 2.750888 CGGTAGAAAGCCCGCTTGC 61.751 63.158 2.03 0.21 37.43 4.01
1405 1418 2.750888 GGTAGAAAGCCCGCTTGCG 61.751 63.158 8.14 8.14 36.71 4.85
1406 1419 2.435938 TAGAAAGCCCGCTTGCGG 60.436 61.111 25.17 25.17 36.71 5.69
1429 1442 1.142667 TGACAGACAGATTGGCAACCA 59.857 47.619 0.00 0.00 28.62 3.67
1551 1564 2.196997 CTGGCGGAAATGGTGGAGGA 62.197 60.000 0.00 0.00 0.00 3.71
1833 1846 2.919228 AGGTGACGGCCTGAATTAATC 58.081 47.619 0.00 0.00 37.50 1.75
1912 1940 0.606401 GAGTTGCAGGTGGCTTGCTA 60.606 55.000 4.95 0.00 45.15 3.49
2055 2083 3.543460 GCGACCAACATTAACGTCATAGC 60.543 47.826 0.00 0.00 0.00 2.97
2056 2084 3.615056 CGACCAACATTAACGTCATAGCA 59.385 43.478 0.00 0.00 0.00 3.49
2146 2174 4.640771 TTTCCTCTTCACCTGCATAGTT 57.359 40.909 0.00 0.00 0.00 2.24
2246 2274 2.892425 CGCCTTGCTCGATGGGAC 60.892 66.667 0.00 0.00 0.00 4.46
2249 2277 1.443407 CCTTGCTCGATGGGACGAT 59.557 57.895 0.00 0.00 41.39 3.73
2256 2284 0.106369 TCGATGGGACGATAGGTGGT 60.106 55.000 0.00 0.00 43.77 4.16
2257 2285 1.143481 TCGATGGGACGATAGGTGGTA 59.857 52.381 0.00 0.00 43.77 3.25
2258 2286 1.268899 CGATGGGACGATAGGTGGTAC 59.731 57.143 0.00 0.00 43.77 3.34
2294 2322 4.372656 AGAAGCACAACTACTCAGTGTTC 58.627 43.478 0.00 0.00 34.36 3.18
2297 2325 5.127693 AGCACAACTACTCAGTGTTCTAG 57.872 43.478 0.00 0.00 34.36 2.43
2298 2326 4.827835 AGCACAACTACTCAGTGTTCTAGA 59.172 41.667 0.00 0.00 34.36 2.43
2299 2327 4.918583 GCACAACTACTCAGTGTTCTAGAC 59.081 45.833 0.00 0.00 34.36 2.59
2300 2328 5.507482 GCACAACTACTCAGTGTTCTAGACA 60.507 44.000 0.00 0.00 34.36 3.41
2301 2329 6.682746 CACAACTACTCAGTGTTCTAGACAT 58.317 40.000 0.00 0.00 41.10 3.06
2302 2330 6.584184 CACAACTACTCAGTGTTCTAGACATG 59.416 42.308 0.00 0.00 41.10 3.21
2303 2331 6.265649 ACAACTACTCAGTGTTCTAGACATGT 59.734 38.462 0.00 0.00 41.10 3.21
2304 2332 7.447545 ACAACTACTCAGTGTTCTAGACATGTA 59.552 37.037 0.00 0.00 41.10 2.29
2305 2333 7.380431 ACTACTCAGTGTTCTAGACATGTAC 57.620 40.000 0.00 0.00 41.10 2.90
2306 2334 7.169591 ACTACTCAGTGTTCTAGACATGTACT 58.830 38.462 0.00 0.37 41.10 2.73
2307 2335 6.503589 ACTCAGTGTTCTAGACATGTACTC 57.496 41.667 0.00 0.00 41.10 2.59
2308 2336 5.416326 ACTCAGTGTTCTAGACATGTACTCC 59.584 44.000 0.00 0.00 41.10 3.85
2309 2337 4.395231 TCAGTGTTCTAGACATGTACTCCG 59.605 45.833 0.00 0.00 41.10 4.63
2310 2338 4.156190 CAGTGTTCTAGACATGTACTCCGT 59.844 45.833 0.00 0.00 41.10 4.69
2311 2339 5.353400 CAGTGTTCTAGACATGTACTCCGTA 59.647 44.000 0.00 0.00 41.10 4.02
2312 2340 5.353678 AGTGTTCTAGACATGTACTCCGTAC 59.646 44.000 0.00 0.00 41.10 3.67
2324 2352 5.744171 TGTACTCCGTACATCTAGTAACCA 58.256 41.667 2.93 0.00 42.99 3.67
2325 2353 5.586243 TGTACTCCGTACATCTAGTAACCAC 59.414 44.000 2.93 0.00 42.99 4.16
2326 2354 4.853007 ACTCCGTACATCTAGTAACCACT 58.147 43.478 0.00 0.00 38.91 4.00
2327 2355 5.259632 ACTCCGTACATCTAGTAACCACTT 58.740 41.667 0.00 0.00 36.14 3.16
2328 2356 6.418101 ACTCCGTACATCTAGTAACCACTTA 58.582 40.000 0.00 0.00 36.14 2.24
2329 2357 6.317391 ACTCCGTACATCTAGTAACCACTTAC 59.683 42.308 0.00 0.00 36.14 2.34
2330 2358 5.590259 TCCGTACATCTAGTAACCACTTACC 59.410 44.000 0.00 0.00 36.14 2.85
2331 2359 5.357878 CCGTACATCTAGTAACCACTTACCA 59.642 44.000 0.00 0.00 36.14 3.25
2332 2360 6.459298 CCGTACATCTAGTAACCACTTACCAG 60.459 46.154 0.00 0.00 36.14 4.00
2333 2361 6.094603 CGTACATCTAGTAACCACTTACCAGT 59.905 42.308 0.00 0.00 36.14 4.00
2334 2362 7.280876 CGTACATCTAGTAACCACTTACCAGTA 59.719 40.741 0.00 0.00 36.14 2.74
2335 2363 7.642082 ACATCTAGTAACCACTTACCAGTAG 57.358 40.000 0.00 0.00 36.14 2.57
2336 2364 7.180663 ACATCTAGTAACCACTTACCAGTAGT 58.819 38.462 0.00 0.00 36.14 2.73
2337 2365 7.122353 ACATCTAGTAACCACTTACCAGTAGTG 59.878 40.741 0.00 0.00 36.14 2.74
2383 2411 2.760634 TACATGACAGATTGTGGCGT 57.239 45.000 0.00 0.00 36.69 5.68
2417 2445 2.253603 GTGCAGCCGATGAAATTGAAC 58.746 47.619 0.00 0.00 0.00 3.18
2470 2498 5.722021 ACAGTTTGATACCATTGGTTTCC 57.278 39.130 14.78 3.56 37.09 3.13
2471 2499 5.144100 ACAGTTTGATACCATTGGTTTCCA 58.856 37.500 14.78 4.80 37.09 3.53
2472 2500 5.010617 ACAGTTTGATACCATTGGTTTCCAC 59.989 40.000 14.78 13.93 37.09 4.02
2476 2504 4.594970 TGATACCATTGGTTTCCACGAAT 58.405 39.130 14.78 0.00 37.09 3.34
2499 2527 4.593206 TCTCTTTCCTCTTTGGCTAGAACA 59.407 41.667 0.00 0.00 35.26 3.18
2501 2529 5.063880 TCTTTCCTCTTTGGCTAGAACAAC 58.936 41.667 0.00 0.00 35.26 3.32
2514 2542 4.559251 GCTAGAACAACGTGACAGTATGAG 59.441 45.833 0.00 0.00 39.69 2.90
2515 2543 3.318017 AGAACAACGTGACAGTATGAGC 58.682 45.455 0.00 0.00 39.69 4.26
2516 2544 2.812358 ACAACGTGACAGTATGAGCA 57.188 45.000 0.00 0.00 39.69 4.26
2517 2545 3.319137 ACAACGTGACAGTATGAGCAT 57.681 42.857 0.00 0.00 39.69 3.79
2524 2552 2.940410 TGACAGTATGAGCATGCATGTG 59.060 45.455 26.79 17.31 39.69 3.21
2537 2565 1.022735 GCATGTGCAGGAGGAATCAG 58.977 55.000 0.00 0.00 41.59 2.90
2613 2641 5.794894 CCACCCAGGTATGTATATTCAGAC 58.205 45.833 0.00 0.00 0.00 3.51
2617 2645 6.844388 ACCCAGGTATGTATATTCAGACTGAA 59.156 38.462 19.85 19.85 41.09 3.02
2653 2697 6.606395 GGAATATACGGTGGATATAGGACTGT 59.394 42.308 0.00 0.00 33.72 3.55
2664 2708 6.126332 TGGATATAGGACTGTATTTTTGGGCA 60.126 38.462 0.00 0.00 0.00 5.36
2665 2709 6.775629 GGATATAGGACTGTATTTTTGGGCAA 59.224 38.462 0.00 0.00 0.00 4.52
2667 2711 3.571590 AGGACTGTATTTTTGGGCAACA 58.428 40.909 0.00 0.00 39.74 3.33
2671 2715 3.002102 CTGTATTTTTGGGCAACATGGC 58.998 45.455 0.00 0.00 42.88 4.40
2692 2741 2.426651 GCCGGTAGAGCCTGTATGA 58.573 57.895 1.90 0.00 34.25 2.15
2701 2750 5.105675 GGTAGAGCCTGTATGAGCTAATACC 60.106 48.000 17.24 3.72 41.00 2.73
2713 2762 1.762957 GCTAATACCAGGTCTGAGCCA 59.237 52.381 3.17 0.00 0.00 4.75
2721 2770 0.536006 AGGTCTGAGCCAAGTTGTGC 60.536 55.000 2.76 5.24 0.00 4.57
2743 2792 1.339929 GTTCGTTTGGTTGCTCCCATT 59.660 47.619 0.00 0.00 33.60 3.16
2744 2793 1.698506 TCGTTTGGTTGCTCCCATTT 58.301 45.000 0.00 0.00 33.60 2.32
2745 2794 1.611491 TCGTTTGGTTGCTCCCATTTC 59.389 47.619 0.00 0.00 33.60 2.17
2746 2795 1.336795 CGTTTGGTTGCTCCCATTTCC 60.337 52.381 0.00 0.00 33.60 3.13
2747 2796 1.970640 GTTTGGTTGCTCCCATTTCCT 59.029 47.619 0.00 0.00 33.60 3.36
2748 2797 1.923356 TTGGTTGCTCCCATTTCCTC 58.077 50.000 0.00 0.00 33.60 3.71
2751 2800 1.683319 GGTTGCTCCCATTTCCTCTCC 60.683 57.143 0.00 0.00 0.00 3.71
2752 2801 1.283321 GTTGCTCCCATTTCCTCTCCT 59.717 52.381 0.00 0.00 0.00 3.69
2754 2803 0.915364 GCTCCCATTTCCTCTCCTGT 59.085 55.000 0.00 0.00 0.00 4.00
2755 2804 1.134250 GCTCCCATTTCCTCTCCTGTC 60.134 57.143 0.00 0.00 0.00 3.51
2756 2805 1.488393 CTCCCATTTCCTCTCCTGTCC 59.512 57.143 0.00 0.00 0.00 4.02
2757 2806 1.081174 TCCCATTTCCTCTCCTGTCCT 59.919 52.381 0.00 0.00 0.00 3.85
2758 2807 1.488393 CCCATTTCCTCTCCTGTCCTC 59.512 57.143 0.00 0.00 0.00 3.71
2759 2808 2.191400 CCATTTCCTCTCCTGTCCTCA 58.809 52.381 0.00 0.00 0.00 3.86
2760 2809 2.093235 CCATTTCCTCTCCTGTCCTCAC 60.093 54.545 0.00 0.00 0.00 3.51
2761 2810 2.398754 TTTCCTCTCCTGTCCTCACA 57.601 50.000 0.00 0.00 0.00 3.58
2762 2811 2.630889 TTCCTCTCCTGTCCTCACAT 57.369 50.000 0.00 0.00 0.00 3.21
2763 2812 2.630889 TCCTCTCCTGTCCTCACATT 57.369 50.000 0.00 0.00 0.00 2.71
2764 2813 2.182827 TCCTCTCCTGTCCTCACATTG 58.817 52.381 0.00 0.00 0.00 2.82
2765 2814 1.209019 CCTCTCCTGTCCTCACATTGG 59.791 57.143 0.00 0.00 0.00 3.16
2766 2815 0.615331 TCTCCTGTCCTCACATTGGC 59.385 55.000 0.00 0.00 0.00 4.52
2767 2816 0.393537 CTCCTGTCCTCACATTGGCC 60.394 60.000 0.00 0.00 0.00 5.36
2768 2817 0.842030 TCCTGTCCTCACATTGGCCT 60.842 55.000 3.32 0.00 0.00 5.19
2769 2818 0.911769 CCTGTCCTCACATTGGCCTA 59.088 55.000 3.32 0.00 0.00 3.93
2770 2819 1.281867 CCTGTCCTCACATTGGCCTAA 59.718 52.381 3.32 0.00 0.00 2.69
2771 2820 2.092212 CCTGTCCTCACATTGGCCTAAT 60.092 50.000 3.32 0.00 0.00 1.73
2772 2821 3.136443 CCTGTCCTCACATTGGCCTAATA 59.864 47.826 3.32 0.00 0.00 0.98
2773 2822 4.384056 CTGTCCTCACATTGGCCTAATAG 58.616 47.826 3.32 0.00 0.00 1.73
2774 2823 4.037222 TGTCCTCACATTGGCCTAATAGA 58.963 43.478 3.32 3.66 0.00 1.98
2775 2824 4.101585 TGTCCTCACATTGGCCTAATAGAG 59.898 45.833 3.32 11.93 33.35 2.43
2776 2825 3.071602 TCCTCACATTGGCCTAATAGAGC 59.928 47.826 3.32 0.00 32.74 4.09
2784 2833 3.717400 GGCCTAATAGAGCCTTTTTGC 57.283 47.619 11.05 0.00 46.14 3.68
2785 2834 3.023832 GGCCTAATAGAGCCTTTTTGCA 58.976 45.455 11.05 0.00 46.14 4.08
2786 2835 3.181486 GGCCTAATAGAGCCTTTTTGCAC 60.181 47.826 11.05 0.00 46.14 4.57
2787 2836 3.696548 GCCTAATAGAGCCTTTTTGCACT 59.303 43.478 0.00 0.00 36.18 4.40
2788 2837 4.158579 GCCTAATAGAGCCTTTTTGCACTT 59.841 41.667 0.00 0.00 34.02 3.16
2789 2838 5.644644 CCTAATAGAGCCTTTTTGCACTTG 58.355 41.667 0.00 0.00 34.02 3.16
2790 2839 5.183904 CCTAATAGAGCCTTTTTGCACTTGT 59.816 40.000 0.00 0.00 34.02 3.16
2791 2840 5.535753 AATAGAGCCTTTTTGCACTTGTT 57.464 34.783 0.00 0.00 34.02 2.83
2792 2841 3.443099 AGAGCCTTTTTGCACTTGTTC 57.557 42.857 0.00 0.00 0.00 3.18
2793 2842 2.119457 GAGCCTTTTTGCACTTGTTCG 58.881 47.619 0.00 0.00 0.00 3.95
2794 2843 1.202405 AGCCTTTTTGCACTTGTTCGG 60.202 47.619 0.00 0.00 0.00 4.30
2795 2844 1.202359 GCCTTTTTGCACTTGTTCGGA 60.202 47.619 0.00 0.00 0.00 4.55
2796 2845 2.459934 CCTTTTTGCACTTGTTCGGAC 58.540 47.619 0.00 0.00 0.00 4.79
2797 2846 2.459934 CTTTTTGCACTTGTTCGGACC 58.540 47.619 0.00 0.00 0.00 4.46
2798 2847 1.757682 TTTTGCACTTGTTCGGACCT 58.242 45.000 0.00 0.00 0.00 3.85
2799 2848 1.021202 TTTGCACTTGTTCGGACCTG 58.979 50.000 0.00 0.00 0.00 4.00
2800 2849 1.444119 TTGCACTTGTTCGGACCTGC 61.444 55.000 0.00 0.00 0.00 4.85
2801 2850 1.598130 GCACTTGTTCGGACCTGCT 60.598 57.895 0.00 0.00 0.00 4.24
2802 2851 1.166531 GCACTTGTTCGGACCTGCTT 61.167 55.000 0.00 0.00 0.00 3.91
2803 2852 0.588252 CACTTGTTCGGACCTGCTTG 59.412 55.000 0.00 0.00 0.00 4.01
2804 2853 0.535102 ACTTGTTCGGACCTGCTTGG 60.535 55.000 0.00 0.00 42.93 3.61
2816 2865 4.404654 GCTTGGCTGGAAACCGCG 62.405 66.667 0.00 0.00 0.00 6.46
2824 2873 0.878416 CTGGAAACCGCGGATTTGAA 59.122 50.000 35.90 14.61 0.00 2.69
2825 2874 0.594110 TGGAAACCGCGGATTTGAAC 59.406 50.000 35.90 17.65 0.00 3.18
2834 2932 2.472397 CGCGGATTTGAACGTTTCTCTC 60.472 50.000 0.46 0.00 0.00 3.20
2840 2938 1.865865 TGAACGTTTCTCTCTGTGGC 58.134 50.000 0.46 0.00 0.00 5.01
2842 2940 0.759346 AACGTTTCTCTCTGTGGCCT 59.241 50.000 3.32 0.00 0.00 5.19
2851 2949 0.682209 CTCTGTGGCCTGGATTTGGG 60.682 60.000 3.32 0.00 0.00 4.12
2895 2993 1.028905 TGCTAGCAACCAAACACACC 58.971 50.000 16.84 0.00 0.00 4.16
2906 3004 5.659440 ACCAAACACACCCATAATGAATC 57.341 39.130 0.00 0.00 0.00 2.52
2930 3056 8.715191 TCTGTTTGAACTAAATGCATTTTGTT 57.285 26.923 35.81 35.81 44.25 2.83
2931 3057 9.160496 TCTGTTTGAACTAAATGCATTTTGTTT 57.840 25.926 35.64 25.39 42.62 2.83
2932 3058 9.424659 CTGTTTGAACTAAATGCATTTTGTTTC 57.575 29.630 35.64 29.30 42.62 2.78
2933 3059 8.113062 TGTTTGAACTAAATGCATTTTGTTTCG 58.887 29.630 35.64 19.32 42.62 3.46
2934 3060 7.763172 TTGAACTAAATGCATTTTGTTTCGT 57.237 28.000 35.64 23.14 42.62 3.85
2935 3061 7.388290 TGAACTAAATGCATTTTGTTTCGTC 57.612 32.000 35.64 27.68 42.62 4.20
3195 3322 9.673283 TTGGGGATCTGATTGGAATTTTTATAT 57.327 29.630 0.00 0.00 0.00 0.86
3230 3514 0.793861 TAAGCGACAACATGAACCGC 59.206 50.000 0.00 8.97 45.39 5.68
3242 3526 0.584396 TGAACCGCAGTTTGCTAACG 59.416 50.000 5.38 2.53 42.25 3.18
3245 3529 0.249741 ACCGCAGTTTGCTAACGAGT 60.250 50.000 5.38 0.00 42.25 4.18
3246 3530 1.000060 ACCGCAGTTTGCTAACGAGTA 60.000 47.619 5.38 0.00 42.25 2.59
3247 3531 2.063266 CCGCAGTTTGCTAACGAGTAA 58.937 47.619 5.38 0.00 42.25 2.24
3248 3532 2.477375 CCGCAGTTTGCTAACGAGTAAA 59.523 45.455 5.38 0.00 42.25 2.01
3249 3533 3.059461 CCGCAGTTTGCTAACGAGTAAAA 60.059 43.478 5.38 0.00 42.25 1.52
3250 3534 4.520078 CGCAGTTTGCTAACGAGTAAAAA 58.480 39.130 5.38 0.00 42.25 1.94
3251 3535 5.144359 CGCAGTTTGCTAACGAGTAAAAAT 58.856 37.500 5.38 0.00 42.25 1.82
3252 3536 6.301108 CGCAGTTTGCTAACGAGTAAAAATA 58.699 36.000 5.38 0.00 42.25 1.40
3253 3537 6.793203 CGCAGTTTGCTAACGAGTAAAAATAA 59.207 34.615 5.38 0.00 42.25 1.40
3284 3568 8.677148 ATAATTGTGGGTATGCTAACAAGTAG 57.323 34.615 12.01 0.00 36.77 2.57
3316 3699 3.762823 ACCGAGACCTGTACCTTTTCTAG 59.237 47.826 0.00 0.00 0.00 2.43
3402 3785 2.469826 CTTCGCATCACGCATAACCTA 58.530 47.619 0.00 0.00 42.60 3.08
3532 3915 2.045926 CCGGGCTTCTGTTCCTGG 60.046 66.667 0.00 0.00 42.07 4.45
3552 3935 2.762327 GGTTGGGTTCATGCTGATCATT 59.238 45.455 0.00 0.00 31.79 2.57
3555 3938 2.756207 TGGGTTCATGCTGATCATTGTG 59.244 45.455 0.00 0.00 31.79 3.33
3759 4142 4.238514 GTGATGCGTGTCTCCTTATATCC 58.761 47.826 0.00 0.00 0.00 2.59
3760 4143 3.258372 TGATGCGTGTCTCCTTATATCCC 59.742 47.826 0.00 0.00 0.00 3.85
3761 4144 1.968493 TGCGTGTCTCCTTATATCCCC 59.032 52.381 0.00 0.00 0.00 4.81
3762 4145 1.968493 GCGTGTCTCCTTATATCCCCA 59.032 52.381 0.00 0.00 0.00 4.96
3763 4146 2.028930 GCGTGTCTCCTTATATCCCCAG 60.029 54.545 0.00 0.00 0.00 4.45
3764 4147 2.563179 CGTGTCTCCTTATATCCCCAGG 59.437 54.545 0.00 0.00 0.00 4.45
3837 4223 1.655484 TGCATCCATCAGTGCGTAAG 58.345 50.000 0.00 0.00 44.11 2.34
3891 4277 0.035056 AGCCAGCGCTTCAAGGTTAT 60.035 50.000 7.50 0.00 45.55 1.89
3923 4309 1.610624 GCTTTGCACCCTGTAGTAGCA 60.611 52.381 0.00 0.00 0.00 3.49
3925 4311 2.178912 TTGCACCCTGTAGTAGCAAC 57.821 50.000 0.00 0.00 39.95 4.17
3957 4343 1.745141 GCACATCCATCCACCAGACTC 60.745 57.143 0.00 0.00 0.00 3.36
3958 4344 0.826715 ACATCCATCCACCAGACTCG 59.173 55.000 0.00 0.00 0.00 4.18
3969 4357 1.326213 CCAGACTCGGCTCTCACCAT 61.326 60.000 0.00 0.00 0.00 3.55
3970 4358 0.179116 CAGACTCGGCTCTCACCATG 60.179 60.000 0.00 0.00 0.00 3.66
3971 4359 1.520342 GACTCGGCTCTCACCATGC 60.520 63.158 0.00 0.00 0.00 4.06
3976 4364 1.676635 GGCTCTCACCATGCTGCAA 60.677 57.895 6.36 0.00 0.00 4.08
3983 4371 0.956633 CACCATGCTGCAAAGTGACT 59.043 50.000 23.34 0.00 0.00 3.41
3997 4385 3.904136 AGTGACTTTGCTGATTTTCCG 57.096 42.857 0.00 0.00 0.00 4.30
4011 4399 1.031571 TTTCCGTGATCCATGCAGGC 61.032 55.000 0.00 0.00 37.29 4.85
4012 4400 2.891941 TTCCGTGATCCATGCAGGCC 62.892 60.000 0.00 0.00 37.29 5.19
4052 4440 1.500512 GGTTGGTTCGTTGCAGCGTA 61.501 55.000 22.48 10.77 0.00 4.42
4058 4446 1.587034 GTTCGTTGCAGCGTATAGACC 59.413 52.381 22.48 0.00 0.00 3.85
4059 4447 0.248336 TCGTTGCAGCGTATAGACCG 60.248 55.000 22.48 0.00 0.00 4.79
4062 4450 0.101759 TTGCAGCGTATAGACCGGTC 59.898 55.000 27.67 27.67 33.14 4.79
4076 4464 0.389948 CCGGTCCTGAAGAAACTCCG 60.390 60.000 0.00 0.00 36.85 4.63
4077 4465 1.014564 CGGTCCTGAAGAAACTCCGC 61.015 60.000 0.00 0.00 0.00 5.54
4078 4466 1.014564 GGTCCTGAAGAAACTCCGCG 61.015 60.000 0.00 0.00 0.00 6.46
4084 4472 0.455633 GAAGAAACTCCGCGAGCGTA 60.456 55.000 8.23 0.00 37.81 4.42
4100 4488 3.131240 GCGTATTGCGGATCAGTTTTT 57.869 42.857 0.00 0.00 41.69 1.94
4102 4490 3.342269 CGTATTGCGGATCAGTTTTTCG 58.658 45.455 0.00 0.00 36.85 3.46
4108 4496 3.226347 GCGGATCAGTTTTTCGTTTCAG 58.774 45.455 0.00 0.00 0.00 3.02
4109 4497 3.810373 CGGATCAGTTTTTCGTTTCAGG 58.190 45.455 0.00 0.00 0.00 3.86
4176 4596 4.097437 TCACAGGATACGGATGTAGTGTTC 59.903 45.833 0.00 0.00 46.39 3.18
4178 4598 3.637229 CAGGATACGGATGTAGTGTTCCT 59.363 47.826 0.00 0.00 46.39 3.36
4179 4599 3.890147 AGGATACGGATGTAGTGTTCCTC 59.110 47.826 0.00 0.00 46.39 3.71
4180 4600 3.304525 GGATACGGATGTAGTGTTCCTCG 60.305 52.174 0.00 0.00 33.17 4.63
4181 4601 1.830279 ACGGATGTAGTGTTCCTCGA 58.170 50.000 0.00 0.00 0.00 4.04
4182 4602 1.743958 ACGGATGTAGTGTTCCTCGAG 59.256 52.381 5.13 5.13 0.00 4.04
4183 4603 1.534175 CGGATGTAGTGTTCCTCGAGC 60.534 57.143 6.99 0.00 0.00 5.03
4184 4604 1.476891 GGATGTAGTGTTCCTCGAGCA 59.523 52.381 6.99 0.00 0.00 4.26
4185 4605 2.531206 GATGTAGTGTTCCTCGAGCAC 58.469 52.381 6.99 10.20 42.61 4.40
4189 4609 3.822607 GTGTTCCTCGAGCACTGAT 57.177 52.632 6.99 0.00 39.92 2.90
4227 4658 1.579698 CAGAGCCCTCGATGTGATTG 58.420 55.000 0.00 0.00 34.09 2.67
4231 4662 3.197766 AGAGCCCTCGATGTGATTGTTAA 59.802 43.478 0.00 0.00 34.09 2.01
4251 4682 8.282455 TGTTAACTTTACTTTCACATGGACAA 57.718 30.769 7.22 0.00 0.00 3.18
4253 4684 5.418310 ACTTTACTTTCACATGGACAACG 57.582 39.130 0.00 0.00 0.00 4.10
4274 4971 1.032794 CAGTGAGGCCGATGTAGCTA 58.967 55.000 0.00 0.00 0.00 3.32
4290 4987 3.214696 AGCTACAACTTTCCAAGTGCT 57.785 42.857 0.00 0.00 41.91 4.40
4297 4994 3.857157 ACTTTCCAAGTGCTACTTCCA 57.143 42.857 0.00 0.00 41.01 3.53
4299 4996 2.859165 TTCCAAGTGCTACTTCCAGG 57.141 50.000 0.00 0.00 36.03 4.45
4300 4997 0.984230 TCCAAGTGCTACTTCCAGGG 59.016 55.000 0.00 0.00 36.03 4.45
4303 5000 1.347707 CAAGTGCTACTTCCAGGGTCA 59.652 52.381 0.00 0.00 36.03 4.02
4316 5013 5.467035 TCCAGGGTCAAAATGTTCAAATC 57.533 39.130 0.00 0.00 0.00 2.17
4344 5041 6.375736 TCTCTATAGTGTTTGTGGAGTCAGAG 59.624 42.308 0.00 0.00 0.00 3.35
4347 5044 2.105477 AGTGTTTGTGGAGTCAGAGCAT 59.895 45.455 0.00 0.00 0.00 3.79
4363 5060 3.312828 GAGCATCTACAGCAATAGTCCG 58.687 50.000 0.00 0.00 0.00 4.79
4364 5061 2.695666 AGCATCTACAGCAATAGTCCGT 59.304 45.455 0.00 0.00 0.00 4.69
4365 5062 3.053455 GCATCTACAGCAATAGTCCGTC 58.947 50.000 0.00 0.00 0.00 4.79
4366 5063 3.243569 GCATCTACAGCAATAGTCCGTCT 60.244 47.826 0.00 0.00 0.00 4.18
4367 5064 4.294232 CATCTACAGCAATAGTCCGTCTG 58.706 47.826 0.00 0.00 0.00 3.51
4375 5072 3.021695 CAATAGTCCGTCTGTAGTCCCA 58.978 50.000 0.00 0.00 0.00 4.37
4385 5082 1.071071 CTGTAGTCCCACAAAACCGGA 59.929 52.381 9.46 0.00 0.00 5.14
4392 5089 1.004979 CCCACAAAACCGGATAAGGGA 59.995 52.381 9.46 0.00 37.22 4.20
4400 5097 4.482952 AACCGGATAAGGGAGTACAAAG 57.517 45.455 9.46 0.00 35.02 2.77
4404 5101 4.161754 CCGGATAAGGGAGTACAAAGTTCT 59.838 45.833 0.00 0.00 0.00 3.01
4441 5138 2.353323 CGGACCTAGCCAAACCTTAAC 58.647 52.381 0.00 0.00 0.00 2.01
4446 5143 1.003928 CTAGCCAAACCTTAACCCGGT 59.996 52.381 0.00 0.00 35.97 5.28
4464 5161 4.386954 CCCGGTTTAACTAGTCGAAACTTC 59.613 45.833 22.77 12.61 36.92 3.01
4468 5165 6.306596 CGGTTTAACTAGTCGAAACTTCTACC 59.693 42.308 22.77 11.94 36.92 3.18
4481 5178 4.604784 ACTTCTACCCCTAGCTTCTACA 57.395 45.455 0.00 0.00 0.00 2.74
4500 5198 4.399004 ACAGTGGCTCAATCTCAGATAC 57.601 45.455 0.00 0.00 0.00 2.24
4502 5200 4.223700 ACAGTGGCTCAATCTCAGATACAA 59.776 41.667 0.00 0.00 0.00 2.41
4515 5213 0.996583 GATACAACACCCCTTCCCCA 59.003 55.000 0.00 0.00 0.00 4.96
4526 5224 2.594303 TTCCCCACGCTTGCACTG 60.594 61.111 0.00 0.00 0.00 3.66
4530 5228 2.646719 CCACGCTTGCACTGCATT 59.353 55.556 4.10 0.00 38.76 3.56
4531 5229 1.585267 CCCACGCTTGCACTGCATTA 61.585 55.000 4.10 0.00 38.76 1.90
4532 5230 0.452987 CCACGCTTGCACTGCATTAT 59.547 50.000 4.10 0.00 38.76 1.28
4533 5231 1.532505 CCACGCTTGCACTGCATTATC 60.533 52.381 4.10 0.00 38.76 1.75
4534 5232 0.374758 ACGCTTGCACTGCATTATCG 59.625 50.000 4.10 8.53 38.76 2.92
4535 5233 0.652071 CGCTTGCACTGCATTATCGA 59.348 50.000 4.10 0.00 38.76 3.59
4536 5234 1.593070 CGCTTGCACTGCATTATCGAC 60.593 52.381 4.10 0.00 38.76 4.20
4537 5235 1.593070 GCTTGCACTGCATTATCGACG 60.593 52.381 4.10 0.00 38.76 5.12
4538 5236 1.660607 CTTGCACTGCATTATCGACGT 59.339 47.619 4.10 0.00 38.76 4.34
4539 5237 2.570442 TGCACTGCATTATCGACGTA 57.430 45.000 0.00 0.00 31.71 3.57
4540 5238 2.459934 TGCACTGCATTATCGACGTAG 58.540 47.619 0.00 0.00 31.71 3.51
4541 5239 1.190323 GCACTGCATTATCGACGTAGC 59.810 52.381 0.00 0.00 0.00 3.58
4542 5240 2.459934 CACTGCATTATCGACGTAGCA 58.540 47.619 0.00 0.00 0.00 3.49
4543 5241 2.216488 CACTGCATTATCGACGTAGCAC 59.784 50.000 0.00 0.00 0.00 4.40
4602 5301 3.373565 CCAGGGCGACTTTTGGGC 61.374 66.667 0.00 0.00 0.00 5.36
4633 5333 2.203294 AAAAAGCCCCAGTCGCGT 60.203 55.556 5.77 0.00 0.00 6.01
4650 5351 2.551644 GTCCCAAGACGCCGAAATT 58.448 52.632 0.00 0.00 32.18 1.82
4687 5388 2.199613 TTTTAGCCCGGCGATCCCAA 62.200 55.000 9.30 0.00 0.00 4.12
4775 5501 0.331278 AATCGTCCAGATTTGCCCCA 59.669 50.000 0.00 0.00 46.80 4.96
4856 5586 1.132817 ACTAGATAGGCCATTCCCCGT 60.133 52.381 5.01 0.00 34.51 5.28
4873 5604 0.173708 CGTCGGAAAGGAGAGAAGGG 59.826 60.000 0.00 0.00 0.00 3.95
4876 5607 2.038689 GTCGGAAAGGAGAGAAGGGTTT 59.961 50.000 0.00 0.00 0.00 3.27
4967 5699 2.732094 GTTGTGCGCCTACGACGT 60.732 61.111 4.18 5.52 43.93 4.34
4977 5709 2.046411 TACGACGTCCGCCAGGTA 60.046 61.111 10.58 2.21 43.32 3.08
5072 5804 4.129737 CCGATGCCGACGTCCAGT 62.130 66.667 10.58 0.00 38.22 4.00
5133 5868 2.175566 CGCGAATGAAAAGCCGCA 59.824 55.556 0.00 0.00 46.99 5.69
5340 6076 2.485814 GCTACTTCAAGTGCAAGAAGGG 59.514 50.000 21.64 16.33 44.20 3.95
5371 6107 4.009675 GCACACTTGGATTCACCTCAATA 58.990 43.478 0.00 0.00 39.86 1.90
5515 6251 2.639286 GCAGTGTTTGGACCGCAG 59.361 61.111 0.00 0.00 0.00 5.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 6.256321 GCACAGAGTTGATGTTTTGATGTTTT 59.744 34.615 0.00 0.00 0.00 2.43
41 42 5.750067 GCACAGAGTTGATGTTTTGATGTTT 59.250 36.000 0.00 0.00 0.00 2.83
42 43 5.163530 TGCACAGAGTTGATGTTTTGATGTT 60.164 36.000 0.00 0.00 0.00 2.71
43 44 4.338964 TGCACAGAGTTGATGTTTTGATGT 59.661 37.500 0.00 0.00 0.00 3.06
44 45 4.862350 TGCACAGAGTTGATGTTTTGATG 58.138 39.130 0.00 0.00 0.00 3.07
45 46 4.558095 GCTGCACAGAGTTGATGTTTTGAT 60.558 41.667 0.81 0.00 0.00 2.57
46 47 3.243168 GCTGCACAGAGTTGATGTTTTGA 60.243 43.478 0.81 0.00 0.00 2.69
47 48 3.047796 GCTGCACAGAGTTGATGTTTTG 58.952 45.455 0.81 0.00 0.00 2.44
92 93 0.664166 CTTTTGCGCGAACCATTGCT 60.664 50.000 12.10 0.00 33.43 3.91
239 240 0.099791 GACGGTGAGAGAGCTAGCAC 59.900 60.000 18.83 11.32 0.00 4.40
422 423 0.892755 CCACCGCCTGTCACTACTAA 59.107 55.000 0.00 0.00 0.00 2.24
627 628 1.072331 CCTATGGCGAGGGTTAGCATT 59.928 52.381 0.00 0.00 32.39 3.56
692 693 3.576118 GGCAGAGATAATAGTCAGGCTGA 59.424 47.826 14.43 14.43 0.00 4.26
741 742 2.046023 CCATCCTCACTGGCGCAA 60.046 61.111 10.83 0.00 35.26 4.85
749 750 0.460987 CCTTCAGTCGCCATCCTCAC 60.461 60.000 0.00 0.00 0.00 3.51
750 751 1.617018 CCCTTCAGTCGCCATCCTCA 61.617 60.000 0.00 0.00 0.00 3.86
751 752 1.144936 CCCTTCAGTCGCCATCCTC 59.855 63.158 0.00 0.00 0.00 3.71
752 753 2.370445 CCCCTTCAGTCGCCATCCT 61.370 63.158 0.00 0.00 0.00 3.24
753 754 2.190578 CCCCTTCAGTCGCCATCC 59.809 66.667 0.00 0.00 0.00 3.51
754 755 1.450312 CACCCCTTCAGTCGCCATC 60.450 63.158 0.00 0.00 0.00 3.51
755 756 1.918293 TCACCCCTTCAGTCGCCAT 60.918 57.895 0.00 0.00 0.00 4.40
756 757 2.525629 TCACCCCTTCAGTCGCCA 60.526 61.111 0.00 0.00 0.00 5.69
757 758 2.047179 GTCACCCCTTCAGTCGCC 60.047 66.667 0.00 0.00 0.00 5.54
758 759 1.374758 CAGTCACCCCTTCAGTCGC 60.375 63.158 0.00 0.00 0.00 5.19
759 760 0.244994 CTCAGTCACCCCTTCAGTCG 59.755 60.000 0.00 0.00 0.00 4.18
760 761 0.610687 CCTCAGTCACCCCTTCAGTC 59.389 60.000 0.00 0.00 0.00 3.51
761 762 0.838122 CCCTCAGTCACCCCTTCAGT 60.838 60.000 0.00 0.00 0.00 3.41
762 763 1.557269 CCCCTCAGTCACCCCTTCAG 61.557 65.000 0.00 0.00 0.00 3.02
763 764 1.538876 CCCCTCAGTCACCCCTTCA 60.539 63.158 0.00 0.00 0.00 3.02
764 765 2.301738 CCCCCTCAGTCACCCCTTC 61.302 68.421 0.00 0.00 0.00 3.46
765 766 2.204151 CCCCCTCAGTCACCCCTT 60.204 66.667 0.00 0.00 0.00 3.95
769 770 4.083862 GTCGCCCCCTCAGTCACC 62.084 72.222 0.00 0.00 0.00 4.02
770 771 4.436998 CGTCGCCCCCTCAGTCAC 62.437 72.222 0.00 0.00 0.00 3.67
791 792 3.058160 CAGCTCAAAGGGTGCCCG 61.058 66.667 0.98 0.00 41.95 6.13
792 793 1.228552 TTCAGCTCAAAGGGTGCCC 60.229 57.895 0.00 0.00 36.68 5.36
793 794 0.250901 TCTTCAGCTCAAAGGGTGCC 60.251 55.000 5.72 0.00 36.68 5.01
794 795 0.877743 GTCTTCAGCTCAAAGGGTGC 59.122 55.000 5.72 0.00 35.04 5.01
795 796 1.876156 GTGTCTTCAGCTCAAAGGGTG 59.124 52.381 5.72 0.00 36.21 4.61
796 797 1.490490 TGTGTCTTCAGCTCAAAGGGT 59.510 47.619 5.72 0.00 0.00 4.34
797 798 1.876156 GTGTGTCTTCAGCTCAAAGGG 59.124 52.381 5.72 0.00 0.00 3.95
798 799 2.547211 CTGTGTGTCTTCAGCTCAAAGG 59.453 50.000 5.72 0.00 0.00 3.11
799 800 3.201290 ACTGTGTGTCTTCAGCTCAAAG 58.799 45.455 0.00 0.00 35.37 2.77
800 801 3.198068 GACTGTGTGTCTTCAGCTCAAA 58.802 45.455 0.00 0.00 42.21 2.69
801 802 2.799562 CGACTGTGTGTCTTCAGCTCAA 60.800 50.000 0.00 0.00 43.25 3.02
802 803 1.269257 CGACTGTGTGTCTTCAGCTCA 60.269 52.381 0.00 0.00 43.25 4.26
803 804 1.269309 ACGACTGTGTGTCTTCAGCTC 60.269 52.381 0.00 0.00 43.25 4.09
804 805 0.747255 ACGACTGTGTGTCTTCAGCT 59.253 50.000 0.00 0.00 43.25 4.24
805 806 2.320367 CTACGACTGTGTGTCTTCAGC 58.680 52.381 0.00 0.00 43.25 4.26
806 807 2.030717 AGCTACGACTGTGTGTCTTCAG 60.031 50.000 0.00 0.00 43.25 3.02
807 808 1.954382 AGCTACGACTGTGTGTCTTCA 59.046 47.619 0.00 0.00 43.25 3.02
808 809 2.708386 AGCTACGACTGTGTGTCTTC 57.292 50.000 0.00 0.00 43.25 2.87
809 810 3.147629 ACTAGCTACGACTGTGTGTCTT 58.852 45.455 0.00 0.00 43.25 3.01
810 811 2.743126 GACTAGCTACGACTGTGTGTCT 59.257 50.000 0.00 0.00 43.25 3.41
811 812 2.483106 TGACTAGCTACGACTGTGTGTC 59.517 50.000 0.00 0.00 42.06 3.67
812 813 2.501261 TGACTAGCTACGACTGTGTGT 58.499 47.619 0.00 0.00 0.00 3.72
813 814 3.766676 ATGACTAGCTACGACTGTGTG 57.233 47.619 0.00 0.00 0.00 3.82
814 815 4.259356 TGTATGACTAGCTACGACTGTGT 58.741 43.478 0.00 0.00 0.00 3.72
815 816 4.571176 TCTGTATGACTAGCTACGACTGTG 59.429 45.833 0.00 0.00 0.00 3.66
843 844 4.063967 CCGTGGCGCTGTACCAGA 62.064 66.667 7.64 0.00 38.04 3.86
857 858 4.936823 GTGACACGTGGCGTCCGT 62.937 66.667 21.57 0.00 38.32 4.69
941 942 4.120331 GGAGCGGTTGCCACATGC 62.120 66.667 0.00 0.00 44.31 4.06
1053 1054 1.502640 CAGCAGCAGAAGCAGAAGC 59.497 57.895 0.00 0.00 45.49 3.86
1054 1055 0.956410 AGCAGCAGCAGAAGCAGAAG 60.956 55.000 3.17 0.00 45.49 2.85
1055 1056 1.072678 AGCAGCAGCAGAAGCAGAA 59.927 52.632 3.17 0.00 45.49 3.02
1056 1057 1.671379 CAGCAGCAGCAGAAGCAGA 60.671 57.895 3.17 0.00 45.49 4.26
1057 1058 1.027255 ATCAGCAGCAGCAGAAGCAG 61.027 55.000 3.17 0.00 45.49 4.24
1058 1059 1.002502 ATCAGCAGCAGCAGAAGCA 60.003 52.632 3.17 0.00 45.49 3.91
1132 1136 2.008329 GAGGCTGTGAATGAGCTCTTG 58.992 52.381 16.19 0.00 36.63 3.02
1334 1338 2.289444 TGAGATGAAACGTCTCCCAACC 60.289 50.000 15.39 0.00 41.08 3.77
1404 1417 1.081892 CCAATCTGTCTGTCAAGCCG 58.918 55.000 0.00 0.00 0.00 5.52
1405 1418 0.807496 GCCAATCTGTCTGTCAAGCC 59.193 55.000 0.00 0.00 0.00 4.35
1406 1419 1.527034 TGCCAATCTGTCTGTCAAGC 58.473 50.000 0.00 0.00 0.00 4.01
1407 1420 2.227388 GGTTGCCAATCTGTCTGTCAAG 59.773 50.000 0.00 0.00 0.00 3.02
1408 1421 2.229792 GGTTGCCAATCTGTCTGTCAA 58.770 47.619 0.00 0.00 0.00 3.18
1409 1422 1.142667 TGGTTGCCAATCTGTCTGTCA 59.857 47.619 0.00 0.00 0.00 3.58
1410 1423 1.808945 CTGGTTGCCAATCTGTCTGTC 59.191 52.381 0.00 0.00 30.80 3.51
1429 1442 1.313812 CGCTGTCCTCCGAACCTACT 61.314 60.000 0.00 0.00 0.00 2.57
1536 1549 0.107654 GTCCTCCTCCACCATTTCCG 60.108 60.000 0.00 0.00 0.00 4.30
1540 1553 2.990479 GCGTCCTCCTCCACCATT 59.010 61.111 0.00 0.00 0.00 3.16
1912 1940 0.839946 ACTGGCCCAATAGCTCGAAT 59.160 50.000 0.00 0.00 0.00 3.34
2055 2083 3.576982 TGGTACCTGAACCTCTGTAACTG 59.423 47.826 14.36 0.00 40.44 3.16
2056 2084 3.853207 TGGTACCTGAACCTCTGTAACT 58.147 45.455 14.36 0.00 40.44 2.24
2246 2274 9.590451 TTAAAAATTCAGTAGTACCACCTATCG 57.410 33.333 0.00 0.00 0.00 2.92
2257 2285 8.903820 AGTTGTGCTTCTTAAAAATTCAGTAGT 58.096 29.630 0.00 0.00 0.00 2.73
2303 2331 5.994250 AGTGGTTACTAGATGTACGGAGTA 58.006 41.667 0.00 0.00 37.38 2.59
2304 2332 4.853007 AGTGGTTACTAGATGTACGGAGT 58.147 43.478 0.00 0.00 39.30 3.85
2305 2333 5.831702 AAGTGGTTACTAGATGTACGGAG 57.168 43.478 0.00 0.00 35.69 4.63
2306 2334 5.590259 GGTAAGTGGTTACTAGATGTACGGA 59.410 44.000 0.00 0.00 38.92 4.69
2307 2335 5.357878 TGGTAAGTGGTTACTAGATGTACGG 59.642 44.000 0.00 0.00 38.92 4.02
2308 2336 6.094603 ACTGGTAAGTGGTTACTAGATGTACG 59.905 42.308 13.64 0.00 45.94 3.67
2309 2337 7.401955 ACTGGTAAGTGGTTACTAGATGTAC 57.598 40.000 13.64 0.00 45.94 2.90
2310 2338 8.331740 ACTACTGGTAAGTGGTTACTAGATGTA 58.668 37.037 13.64 0.00 45.03 2.29
2311 2339 7.122353 CACTACTGGTAAGTGGTTACTAGATGT 59.878 40.741 13.64 9.28 45.03 3.06
2312 2340 7.416438 CCACTACTGGTAAGTGGTTACTAGATG 60.416 44.444 13.02 9.17 45.03 2.90
2313 2341 6.606395 CCACTACTGGTAAGTGGTTACTAGAT 59.394 42.308 13.02 3.57 45.03 1.98
2314 2342 5.948162 CCACTACTGGTAAGTGGTTACTAGA 59.052 44.000 13.02 0.46 45.03 2.43
2315 2343 5.948162 TCCACTACTGGTAAGTGGTTACTAG 59.052 44.000 18.93 7.01 45.03 2.57
2316 2344 5.891198 TCCACTACTGGTAAGTGGTTACTA 58.109 41.667 18.93 0.28 45.03 1.82
2317 2345 4.744237 TCCACTACTGGTAAGTGGTTACT 58.256 43.478 18.93 0.00 45.03 2.24
2318 2346 5.473066 TTCCACTACTGGTAAGTGGTTAC 57.527 43.478 18.93 0.00 45.03 2.50
2319 2347 6.691255 ATTTCCACTACTGGTAAGTGGTTA 57.309 37.500 18.93 10.51 45.03 2.85
2320 2348 5.578157 ATTTCCACTACTGGTAAGTGGTT 57.422 39.130 18.93 5.94 45.03 3.67
2328 2356 9.408648 CCTCAAATATAAATTTCCACTACTGGT 57.591 33.333 0.00 0.00 38.90 4.00
2329 2357 8.352942 GCCTCAAATATAAATTTCCACTACTGG 58.647 37.037 0.00 0.00 39.23 4.00
2330 2358 8.902806 TGCCTCAAATATAAATTTCCACTACTG 58.097 33.333 0.00 0.00 32.87 2.74
2331 2359 9.646522 ATGCCTCAAATATAAATTTCCACTACT 57.353 29.630 0.00 0.00 32.87 2.57
2332 2360 9.899226 GATGCCTCAAATATAAATTTCCACTAC 57.101 33.333 0.00 0.00 32.87 2.73
2333 2361 9.639563 TGATGCCTCAAATATAAATTTCCACTA 57.360 29.630 0.00 0.00 32.87 2.74
2334 2362 8.537728 TGATGCCTCAAATATAAATTTCCACT 57.462 30.769 0.00 0.00 32.87 4.00
2346 2374 9.571816 TGTCATGTAAATATGATGCCTCAAATA 57.428 29.630 0.00 0.00 39.13 1.40
2347 2375 8.467963 TGTCATGTAAATATGATGCCTCAAAT 57.532 30.769 0.00 0.00 39.13 2.32
2348 2376 7.774625 TCTGTCATGTAAATATGATGCCTCAAA 59.225 33.333 0.00 0.00 39.13 2.69
2349 2377 7.281841 TCTGTCATGTAAATATGATGCCTCAA 58.718 34.615 0.00 0.00 39.13 3.02
2350 2378 6.829849 TCTGTCATGTAAATATGATGCCTCA 58.170 36.000 0.00 0.00 39.13 3.86
2351 2379 7.918536 ATCTGTCATGTAAATATGATGCCTC 57.081 36.000 0.00 0.00 39.13 4.70
2352 2380 7.722728 ACAATCTGTCATGTAAATATGATGCCT 59.277 33.333 0.00 0.00 39.13 4.75
2353 2381 7.806487 CACAATCTGTCATGTAAATATGATGCC 59.194 37.037 0.00 0.00 39.13 4.40
2354 2382 7.806487 CCACAATCTGTCATGTAAATATGATGC 59.194 37.037 0.00 0.00 39.13 3.91
2362 2390 3.407698 ACGCCACAATCTGTCATGTAAA 58.592 40.909 0.00 0.00 0.00 2.01
2367 2395 4.270084 CGTATTTACGCCACAATCTGTCAT 59.730 41.667 0.00 0.00 43.14 3.06
2383 2411 2.226912 GGCTGCACCAAACACGTATTTA 59.773 45.455 0.50 0.00 38.86 1.40
2448 2476 5.010617 GTGGAAACCAATGGTATCAAACTGT 59.989 40.000 4.88 0.00 33.12 3.55
2449 2477 5.469479 GTGGAAACCAATGGTATCAAACTG 58.531 41.667 4.88 0.00 33.12 3.16
2450 2478 4.217550 CGTGGAAACCAATGGTATCAAACT 59.782 41.667 4.88 0.00 33.12 2.66
2451 2479 4.216687 TCGTGGAAACCAATGGTATCAAAC 59.783 41.667 4.88 0.26 33.12 2.93
2452 2480 4.399219 TCGTGGAAACCAATGGTATCAAA 58.601 39.130 4.88 0.00 33.12 2.69
2455 2483 4.881850 AGATTCGTGGAAACCAATGGTATC 59.118 41.667 4.88 2.21 33.12 2.24
2461 2489 4.459337 GGAAAGAGATTCGTGGAAACCAAT 59.541 41.667 0.00 0.00 39.05 3.16
2470 2498 3.126000 GCCAAAGAGGAAAGAGATTCGTG 59.874 47.826 0.00 0.00 41.22 4.35
2471 2499 3.008485 AGCCAAAGAGGAAAGAGATTCGT 59.992 43.478 0.00 0.00 41.22 3.85
2472 2500 3.604582 AGCCAAAGAGGAAAGAGATTCG 58.395 45.455 0.00 0.00 41.22 3.34
2476 2504 4.593206 TGTTCTAGCCAAAGAGGAAAGAGA 59.407 41.667 0.00 0.00 41.22 3.10
2499 2527 2.002586 GCATGCTCATACTGTCACGTT 58.997 47.619 11.37 0.00 0.00 3.99
2501 2529 1.643880 TGCATGCTCATACTGTCACG 58.356 50.000 20.33 0.00 0.00 4.35
2524 2552 1.134250 GGTCTTCCTGATTCCTCCTGC 60.134 57.143 0.00 0.00 0.00 4.85
2537 2565 2.427506 CACAGCAGGTTTAGGTCTTCC 58.572 52.381 0.00 0.00 0.00 3.46
2617 2645 8.660295 TCCACCGTATATTCCTATGAACTTAT 57.340 34.615 0.00 0.00 32.13 1.73
2626 2654 7.997223 CAGTCCTATATCCACCGTATATTCCTA 59.003 40.741 0.00 0.00 0.00 2.94
2627 2655 6.834451 CAGTCCTATATCCACCGTATATTCCT 59.166 42.308 0.00 0.00 0.00 3.36
2628 2656 6.606395 ACAGTCCTATATCCACCGTATATTCC 59.394 42.308 0.00 0.00 0.00 3.01
2629 2657 7.642082 ACAGTCCTATATCCACCGTATATTC 57.358 40.000 0.00 0.00 0.00 1.75
2630 2658 9.710818 AATACAGTCCTATATCCACCGTATATT 57.289 33.333 0.00 0.00 0.00 1.28
2631 2659 9.710818 AAATACAGTCCTATATCCACCGTATAT 57.289 33.333 0.00 0.00 0.00 0.86
2632 2660 9.537852 AAAATACAGTCCTATATCCACCGTATA 57.462 33.333 0.00 0.00 0.00 1.47
2633 2661 8.431910 AAAATACAGTCCTATATCCACCGTAT 57.568 34.615 0.00 0.00 0.00 3.06
2637 2665 6.715264 CCCAAAAATACAGTCCTATATCCACC 59.285 42.308 0.00 0.00 0.00 4.61
2653 2697 2.777832 GGCCATGTTGCCCAAAAATA 57.222 45.000 0.00 0.00 46.11 1.40
2664 2708 4.483243 CTACCGGCCGGCCATGTT 62.483 66.667 43.58 25.68 39.32 2.71
2674 2718 0.315568 CTCATACAGGCTCTACCGGC 59.684 60.000 0.00 0.00 46.52 6.13
2692 2741 2.043227 GGCTCAGACCTGGTATTAGCT 58.957 52.381 22.61 3.62 0.00 3.32
2701 2750 1.233019 CACAACTTGGCTCAGACCTG 58.767 55.000 0.00 0.00 0.00 4.00
2713 2762 1.816224 ACCAAACGAACTGCACAACTT 59.184 42.857 0.00 0.00 0.00 2.66
2721 2770 0.310854 GGGAGCAACCAAACGAACTG 59.689 55.000 0.00 0.00 41.20 3.16
2743 2792 2.568956 CAATGTGAGGACAGGAGAGGAA 59.431 50.000 0.00 0.00 34.87 3.36
2744 2793 2.182827 CAATGTGAGGACAGGAGAGGA 58.817 52.381 0.00 0.00 34.87 3.71
2745 2794 1.209019 CCAATGTGAGGACAGGAGAGG 59.791 57.143 0.00 0.00 34.87 3.69
2746 2795 1.406614 GCCAATGTGAGGACAGGAGAG 60.407 57.143 0.00 0.00 34.87 3.20
2747 2796 0.615331 GCCAATGTGAGGACAGGAGA 59.385 55.000 0.00 0.00 34.87 3.71
2748 2797 0.393537 GGCCAATGTGAGGACAGGAG 60.394 60.000 0.00 0.00 34.87 3.69
2751 2800 2.787473 TTAGGCCAATGTGAGGACAG 57.213 50.000 5.01 0.00 36.27 3.51
2752 2801 4.037222 TCTATTAGGCCAATGTGAGGACA 58.963 43.478 5.01 0.00 36.27 4.02
2754 2803 3.071602 GCTCTATTAGGCCAATGTGAGGA 59.928 47.826 5.01 0.00 33.14 3.71
2755 2804 3.406764 GCTCTATTAGGCCAATGTGAGG 58.593 50.000 5.01 0.00 33.14 3.86
2756 2805 3.406764 GGCTCTATTAGGCCAATGTGAG 58.593 50.000 5.01 14.42 46.84 3.51
2757 2806 3.492102 GGCTCTATTAGGCCAATGTGA 57.508 47.619 5.01 5.59 46.84 3.58
2766 2815 5.183904 ACAAGTGCAAAAAGGCTCTATTAGG 59.816 40.000 0.00 0.00 36.67 2.69
2767 2816 6.259550 ACAAGTGCAAAAAGGCTCTATTAG 57.740 37.500 0.00 0.00 36.67 1.73
2768 2817 6.567701 CGAACAAGTGCAAAAAGGCTCTATTA 60.568 38.462 0.00 0.00 36.67 0.98
2769 2818 5.532557 GAACAAGTGCAAAAAGGCTCTATT 58.467 37.500 0.00 0.00 36.67 1.73
2770 2819 4.320494 CGAACAAGTGCAAAAAGGCTCTAT 60.320 41.667 0.00 0.00 36.67 1.98
2771 2820 3.003275 CGAACAAGTGCAAAAAGGCTCTA 59.997 43.478 0.00 0.00 36.67 2.43
2772 2821 2.223572 CGAACAAGTGCAAAAAGGCTCT 60.224 45.455 0.00 0.00 39.12 4.09
2773 2822 2.119457 CGAACAAGTGCAAAAAGGCTC 58.881 47.619 0.00 0.00 34.04 4.70
2774 2823 1.202405 CCGAACAAGTGCAAAAAGGCT 60.202 47.619 0.00 0.00 34.04 4.58
2775 2824 1.202359 TCCGAACAAGTGCAAAAAGGC 60.202 47.619 0.00 0.00 0.00 4.35
2776 2825 2.459934 GTCCGAACAAGTGCAAAAAGG 58.540 47.619 0.00 0.00 0.00 3.11
2777 2826 2.099098 AGGTCCGAACAAGTGCAAAAAG 59.901 45.455 0.00 0.00 0.00 2.27
2778 2827 2.096248 AGGTCCGAACAAGTGCAAAAA 58.904 42.857 0.00 0.00 0.00 1.94
2779 2828 1.403679 CAGGTCCGAACAAGTGCAAAA 59.596 47.619 0.00 0.00 0.00 2.44
2780 2829 1.021202 CAGGTCCGAACAAGTGCAAA 58.979 50.000 0.00 0.00 0.00 3.68
2781 2830 1.444119 GCAGGTCCGAACAAGTGCAA 61.444 55.000 0.00 0.00 31.74 4.08
2782 2831 1.891919 GCAGGTCCGAACAAGTGCA 60.892 57.895 0.00 0.00 31.74 4.57
2783 2832 1.166531 AAGCAGGTCCGAACAAGTGC 61.167 55.000 0.00 0.00 0.00 4.40
2784 2833 0.588252 CAAGCAGGTCCGAACAAGTG 59.412 55.000 0.00 0.00 0.00 3.16
2785 2834 0.535102 CCAAGCAGGTCCGAACAAGT 60.535 55.000 0.00 0.00 0.00 3.16
2786 2835 1.856265 GCCAAGCAGGTCCGAACAAG 61.856 60.000 0.00 0.00 40.61 3.16
2787 2836 1.896660 GCCAAGCAGGTCCGAACAA 60.897 57.895 0.00 0.00 40.61 2.83
2788 2837 2.281484 GCCAAGCAGGTCCGAACA 60.281 61.111 0.00 0.00 40.61 3.18
2789 2838 2.032681 AGCCAAGCAGGTCCGAAC 59.967 61.111 0.00 0.00 40.61 3.95
2790 2839 2.032528 CAGCCAAGCAGGTCCGAA 59.967 61.111 0.00 0.00 40.61 4.30
2791 2840 4.020617 CCAGCCAAGCAGGTCCGA 62.021 66.667 0.00 0.00 40.61 4.55
2792 2841 3.551496 TTCCAGCCAAGCAGGTCCG 62.551 63.158 0.00 0.00 40.61 4.79
2793 2842 1.228552 TTTCCAGCCAAGCAGGTCC 60.229 57.895 0.00 0.00 40.61 4.46
2794 2843 1.527433 GGTTTCCAGCCAAGCAGGTC 61.527 60.000 0.00 0.00 40.61 3.85
2795 2844 1.531602 GGTTTCCAGCCAAGCAGGT 60.532 57.895 0.00 0.00 40.61 4.00
2796 2845 2.629656 CGGTTTCCAGCCAAGCAGG 61.630 63.158 0.00 0.00 36.52 4.85
2797 2846 2.956987 CGGTTTCCAGCCAAGCAG 59.043 61.111 0.00 0.00 0.00 4.24
2798 2847 3.294493 GCGGTTTCCAGCCAAGCA 61.294 61.111 0.00 0.00 0.00 3.91
2799 2848 4.404654 CGCGGTTTCCAGCCAAGC 62.405 66.667 0.00 0.00 0.00 4.01
2800 2849 3.737172 CCGCGGTTTCCAGCCAAG 61.737 66.667 19.50 0.00 0.00 3.61
2801 2850 3.561120 ATCCGCGGTTTCCAGCCAA 62.561 57.895 27.15 0.67 0.00 4.52
2802 2851 3.561120 AATCCGCGGTTTCCAGCCA 62.561 57.895 27.15 1.58 0.00 4.75
2803 2852 2.340328 AAATCCGCGGTTTCCAGCC 61.340 57.895 27.15 0.00 0.00 4.85
2804 2853 1.154035 CAAATCCGCGGTTTCCAGC 60.154 57.895 27.15 0.00 0.00 4.85
2808 2857 0.236449 ACGTTCAAATCCGCGGTTTC 59.764 50.000 27.15 10.02 0.00 2.78
2816 2865 4.083802 CCACAGAGAGAAACGTTCAAATCC 60.084 45.833 0.00 0.00 0.00 3.01
2824 2873 0.034059 CAGGCCACAGAGAGAAACGT 59.966 55.000 5.01 0.00 0.00 3.99
2825 2874 0.671781 CCAGGCCACAGAGAGAAACG 60.672 60.000 5.01 0.00 0.00 3.60
2834 2932 2.353610 GCCCAAATCCAGGCCACAG 61.354 63.158 5.01 0.00 43.76 3.66
2840 2938 3.682409 TGGGGGCCCAAATCCAGG 61.682 66.667 26.86 0.00 44.12 4.45
2851 2949 3.777910 CATGCAGGCTTTGGGGGC 61.778 66.667 0.00 0.00 0.00 5.80
2906 3004 9.424659 GAAACAAAATGCATTTAGTTCAAACAG 57.575 29.630 24.35 7.54 0.00 3.16
2930 3056 4.712829 TCACCCTGATAACCTATTGACGAA 59.287 41.667 0.00 0.00 0.00 3.85
2931 3057 4.283337 TCACCCTGATAACCTATTGACGA 58.717 43.478 0.00 0.00 0.00 4.20
2932 3058 4.665833 TCACCCTGATAACCTATTGACG 57.334 45.455 0.00 0.00 0.00 4.35
2933 3059 6.263168 CCATTTCACCCTGATAACCTATTGAC 59.737 42.308 0.00 0.00 0.00 3.18
2934 3060 6.069088 ACCATTTCACCCTGATAACCTATTGA 60.069 38.462 0.00 0.00 0.00 2.57
2935 3061 6.129179 ACCATTTCACCCTGATAACCTATTG 58.871 40.000 0.00 0.00 0.00 1.90
3195 3322 7.812690 TGTCGCTTATCAATTACTCCTAGTA 57.187 36.000 0.00 0.00 0.00 1.82
3196 3323 6.710597 TGTCGCTTATCAATTACTCCTAGT 57.289 37.500 0.00 0.00 0.00 2.57
3197 3324 6.978659 TGTTGTCGCTTATCAATTACTCCTAG 59.021 38.462 0.00 0.00 0.00 3.02
3198 3325 6.869695 TGTTGTCGCTTATCAATTACTCCTA 58.130 36.000 0.00 0.00 0.00 2.94
3199 3326 5.730550 TGTTGTCGCTTATCAATTACTCCT 58.269 37.500 0.00 0.00 0.00 3.69
3260 3544 7.853299 TCTACTTGTTAGCATACCCACAATTA 58.147 34.615 0.00 0.00 0.00 1.40
3284 3568 5.048852 GGTACAGGTCTCGGTCATATTACTC 60.049 48.000 0.00 0.00 0.00 2.59
3316 3699 8.420222 AGCTCATACTTGCATATATCATACTCC 58.580 37.037 0.00 0.00 0.00 3.85
3331 3714 6.524933 CCGATCGAGTTTATAGCTCATACTTG 59.475 42.308 18.66 0.00 33.45 3.16
3345 3728 2.828877 TCACAACAACCGATCGAGTTT 58.171 42.857 18.66 3.60 0.00 2.66
3402 3785 1.488393 CCACACCCACCAAAAATGGTT 59.512 47.619 0.00 0.00 40.85 3.67
3507 3890 0.250338 ACAGAAGCCCGGAGAACAAC 60.250 55.000 0.73 0.00 0.00 3.32
3552 3935 2.761767 TCCGAAATAGACGATTCCCACA 59.238 45.455 0.00 0.00 0.00 4.17
3555 3938 3.381949 CAGTCCGAAATAGACGATTCCC 58.618 50.000 0.00 0.00 39.31 3.97
3759 4142 0.033208 TTTTAGATGCTGGGCCTGGG 60.033 55.000 12.70 0.00 0.00 4.45
3760 4143 2.077687 ATTTTAGATGCTGGGCCTGG 57.922 50.000 12.70 2.60 0.00 4.45
3761 4144 2.482490 GCAATTTTAGATGCTGGGCCTG 60.482 50.000 4.53 5.32 39.46 4.85
3762 4145 1.758862 GCAATTTTAGATGCTGGGCCT 59.241 47.619 4.53 0.00 39.46 5.19
3763 4146 1.481772 TGCAATTTTAGATGCTGGGCC 59.518 47.619 0.00 0.00 42.97 5.80
3764 4147 2.931969 GTTGCAATTTTAGATGCTGGGC 59.068 45.455 0.59 0.00 42.97 5.36
3815 4201 2.556144 ACGCACTGATGGATGCATAT 57.444 45.000 0.00 0.00 42.17 1.78
3816 4202 3.392882 CTTACGCACTGATGGATGCATA 58.607 45.455 0.00 0.00 42.17 3.14
3837 4223 3.062234 CGAACGAGAAATACCTTCCAAGC 59.938 47.826 0.00 0.00 34.21 4.01
3891 4277 1.098869 TGCAAAGCGAAACCAAGTGA 58.901 45.000 0.00 0.00 0.00 3.41
3957 4343 3.200593 GCAGCATGGTGAGAGCCG 61.201 66.667 28.34 0.06 35.86 5.52
3958 4344 1.246056 TTTGCAGCATGGTGAGAGCC 61.246 55.000 28.34 10.54 35.86 4.70
3976 4364 3.632145 ACGGAAAATCAGCAAAGTCACTT 59.368 39.130 0.00 0.00 0.00 3.16
3983 4371 3.153130 TGGATCACGGAAAATCAGCAAA 58.847 40.909 0.00 0.00 0.00 3.68
3997 4385 0.394762 TCTTGGCCTGCATGGATCAC 60.395 55.000 3.32 0.00 38.35 3.06
4011 4399 1.310933 ATTTGCGGCTGCTCTCTTGG 61.311 55.000 20.27 0.00 43.34 3.61
4012 4400 0.179171 CATTTGCGGCTGCTCTCTTG 60.179 55.000 20.27 5.66 43.34 3.02
4052 4440 3.442076 AGTTTCTTCAGGACCGGTCTAT 58.558 45.455 32.52 19.57 0.00 1.98
4058 4446 1.014564 GCGGAGTTTCTTCAGGACCG 61.015 60.000 0.00 0.00 41.44 4.79
4059 4447 1.014564 CGCGGAGTTTCTTCAGGACC 61.015 60.000 0.00 0.00 0.00 4.46
4062 4450 1.355066 GCTCGCGGAGTTTCTTCAGG 61.355 60.000 6.13 0.00 31.39 3.86
4076 4464 1.880601 CTGATCCGCAATACGCTCGC 61.881 60.000 0.00 0.00 41.76 5.03
4077 4465 0.595053 ACTGATCCGCAATACGCTCG 60.595 55.000 0.00 0.00 41.76 5.03
4078 4466 1.571919 AACTGATCCGCAATACGCTC 58.428 50.000 0.00 0.00 41.76 5.03
4084 4472 3.915437 AACGAAAAACTGATCCGCAAT 57.085 38.095 0.00 0.00 0.00 3.56
4089 4477 4.515567 AGACCTGAAACGAAAAACTGATCC 59.484 41.667 0.00 0.00 0.00 3.36
4100 4488 2.163010 GACGATGGTAGACCTGAAACGA 59.837 50.000 0.00 0.00 36.82 3.85
4102 4490 2.527100 CGACGATGGTAGACCTGAAAC 58.473 52.381 0.00 0.00 36.82 2.78
4108 4496 0.669077 AGATGCGACGATGGTAGACC 59.331 55.000 0.00 0.00 0.00 3.85
4109 4497 1.604755 AGAGATGCGACGATGGTAGAC 59.395 52.381 0.00 0.00 0.00 2.59
4157 4577 3.890147 GAGGAACACTACATCCGTATCCT 59.110 47.826 0.00 0.00 40.78 3.24
4158 4578 3.304525 CGAGGAACACTACATCCGTATCC 60.305 52.174 0.00 0.00 40.78 2.59
4160 4580 3.548770 TCGAGGAACACTACATCCGTAT 58.451 45.455 0.00 0.00 40.78 3.06
4176 4596 3.955291 CACCTATCAGTGCTCGAGG 57.045 57.895 15.58 0.00 0.00 4.63
4183 4603 3.798878 CACGTGAATAGCACCTATCAGTG 59.201 47.826 10.90 0.00 44.85 3.66
4184 4604 3.181475 CCACGTGAATAGCACCTATCAGT 60.181 47.826 19.30 0.00 44.85 3.41
4185 4605 3.384668 CCACGTGAATAGCACCTATCAG 58.615 50.000 19.30 0.00 44.85 2.90
4186 4606 2.483013 GCCACGTGAATAGCACCTATCA 60.483 50.000 19.30 0.00 44.85 2.15
4187 4607 2.135933 GCCACGTGAATAGCACCTATC 58.864 52.381 19.30 0.00 44.85 2.08
4188 4608 1.202651 GGCCACGTGAATAGCACCTAT 60.203 52.381 19.30 0.00 44.85 2.57
4189 4609 0.177141 GGCCACGTGAATAGCACCTA 59.823 55.000 19.30 0.00 44.85 3.08
4195 4626 2.682893 GCTCTGGCCACGTGAATAG 58.317 57.895 19.30 11.54 0.00 1.73
4227 4658 7.375017 CGTTGTCCATGTGAAAGTAAAGTTAAC 59.625 37.037 0.00 0.00 0.00 2.01
4231 4662 5.007332 GTCGTTGTCCATGTGAAAGTAAAGT 59.993 40.000 0.00 0.00 0.00 2.66
4251 4682 0.963856 TACATCGGCCTCACTGTCGT 60.964 55.000 0.00 0.00 0.00 4.34
4253 4684 0.528684 GCTACATCGGCCTCACTGTC 60.529 60.000 0.00 0.00 0.00 3.51
4290 4987 5.055265 TGAACATTTTGACCCTGGAAGTA 57.945 39.130 0.00 0.00 0.00 2.24
4297 4994 7.288621 AGAGAAAGATTTGAACATTTTGACCCT 59.711 33.333 0.00 0.00 0.00 4.34
4316 5013 7.378966 TGACTCCACAAACACTATAGAGAAAG 58.621 38.462 6.78 0.00 0.00 2.62
4344 5041 3.053455 GACGGACTATTGCTGTAGATGC 58.947 50.000 3.45 0.00 0.00 3.91
4347 5044 3.353557 ACAGACGGACTATTGCTGTAGA 58.646 45.455 0.00 0.00 37.98 2.59
4351 5048 3.489398 GGACTACAGACGGACTATTGCTG 60.489 52.174 0.00 0.00 0.00 4.41
4357 5054 1.352017 TGTGGGACTACAGACGGACTA 59.648 52.381 0.00 0.00 0.00 2.59
4358 5055 0.111832 TGTGGGACTACAGACGGACT 59.888 55.000 0.00 0.00 0.00 3.85
4359 5056 0.963962 TTGTGGGACTACAGACGGAC 59.036 55.000 0.00 0.00 0.00 4.79
4360 5057 1.707106 TTTGTGGGACTACAGACGGA 58.293 50.000 0.00 0.00 0.00 4.69
4361 5058 2.140717 GTTTTGTGGGACTACAGACGG 58.859 52.381 0.00 0.00 0.00 4.79
4362 5059 2.140717 GGTTTTGTGGGACTACAGACG 58.859 52.381 0.00 0.00 0.00 4.18
4363 5060 2.140717 CGGTTTTGTGGGACTACAGAC 58.859 52.381 0.00 0.00 0.00 3.51
4364 5061 1.071071 CCGGTTTTGTGGGACTACAGA 59.929 52.381 0.00 0.00 0.00 3.41
4365 5062 1.071071 TCCGGTTTTGTGGGACTACAG 59.929 52.381 0.00 0.00 0.00 2.74
4366 5063 1.129917 TCCGGTTTTGTGGGACTACA 58.870 50.000 0.00 0.00 0.00 2.74
4367 5064 2.484742 ATCCGGTTTTGTGGGACTAC 57.515 50.000 0.00 0.00 31.52 2.73
4375 5072 3.583966 TGTACTCCCTTATCCGGTTTTGT 59.416 43.478 0.00 0.00 0.00 2.83
4385 5082 8.990163 TGAAAAAGAACTTTGTACTCCCTTAT 57.010 30.769 0.45 0.00 32.36 1.73
4400 5097 6.690098 GTCCGGTTTAACTCTTGAAAAAGAAC 59.310 38.462 0.00 0.00 0.00 3.01
4404 5101 5.195185 AGGTCCGGTTTAACTCTTGAAAAA 58.805 37.500 0.00 0.00 0.00 1.94
4441 5138 3.917988 AGTTTCGACTAGTTAAACCGGG 58.082 45.455 21.79 0.00 34.39 5.73
4446 5143 6.494835 AGGGGTAGAAGTTTCGACTAGTTAAA 59.505 38.462 0.00 0.00 33.94 1.52
4453 5150 2.759535 GCTAGGGGTAGAAGTTTCGACT 59.240 50.000 5.35 0.00 33.94 4.18
4454 5151 2.759535 AGCTAGGGGTAGAAGTTTCGAC 59.240 50.000 0.00 0.00 32.87 4.20
4464 5161 2.959707 CCACTGTAGAAGCTAGGGGTAG 59.040 54.545 0.00 0.00 30.23 3.18
4468 5165 1.410882 GAGCCACTGTAGAAGCTAGGG 59.589 57.143 0.00 0.00 35.23 3.53
4481 5178 4.223700 TGTTGTATCTGAGATTGAGCCACT 59.776 41.667 0.00 0.00 0.00 4.00
4500 5198 2.282180 CGTGGGGAAGGGGTGTTG 60.282 66.667 0.00 0.00 0.00 3.33
4515 5213 0.374758 CGATAATGCAGTGCAAGCGT 59.625 50.000 23.90 10.35 43.62 5.07
4522 5220 2.216488 GTGCTACGTCGATAATGCAGTG 59.784 50.000 0.00 0.00 0.00 3.66
4526 5224 0.158928 GCGTGCTACGTCGATAATGC 59.841 55.000 0.00 0.00 44.73 3.56
4633 5333 1.017177 CGAATTTCGGCGTCTTGGGA 61.017 55.000 10.95 0.00 36.00 4.37
4856 5586 2.025636 AACCCTTCTCTCCTTTCCGA 57.974 50.000 0.00 0.00 0.00 4.55
4977 5709 1.376609 GGGCAGACAAATCGCCGAAT 61.377 55.000 0.00 0.00 42.17 3.34
5072 5804 2.603021 GACCATGAGATGCTCCTCCTA 58.397 52.381 0.00 0.00 32.32 2.94
5149 5884 2.125106 GCTTTCAGCCGTCCCGAT 60.125 61.111 0.00 0.00 34.48 4.18
5150 5885 2.668185 TTTGCTTTCAGCCGTCCCGA 62.668 55.000 0.00 0.00 41.51 5.14
5155 5890 0.668535 GGTTCTTTGCTTTCAGCCGT 59.331 50.000 0.00 0.00 41.51 5.68
5371 6107 0.673985 TAGCTGTCGTGCACTTCTGT 59.326 50.000 16.19 0.00 34.99 3.41
5515 6251 1.064060 GCATTGGGTGATCGCAAGTAC 59.936 52.381 8.82 0.00 46.55 2.73
5569 6305 3.359033 CATCCCAGAAAATCCTCTTGCA 58.641 45.455 0.00 0.00 0.00 4.08
5616 6352 7.955918 AGCAAATGGACAGTTCTTCTATTTTT 58.044 30.769 0.00 0.00 33.32 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.