Multiple sequence alignment - TraesCS3B01G245400
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G245400 | chr3B | 100.000 | 3554 | 0 | 0 | 1 | 3554 | 389265713 | 389262160 | 0.000000e+00 | 6564.0 |
1 | TraesCS3B01G245400 | chr3B | 83.655 | 881 | 69 | 30 | 66 | 903 | 650840711 | 650839863 | 0.000000e+00 | 760.0 |
2 | TraesCS3B01G245400 | chr3B | 91.667 | 60 | 3 | 1 | 1966 | 2025 | 5951316 | 5951373 | 8.180000e-12 | 82.4 |
3 | TraesCS3B01G245400 | chr3A | 92.716 | 1112 | 37 | 12 | 905 | 1984 | 392804316 | 392803217 | 0.000000e+00 | 1565.0 |
4 | TraesCS3B01G245400 | chr3A | 97.033 | 910 | 25 | 2 | 2067 | 2974 | 392803096 | 392802187 | 0.000000e+00 | 1530.0 |
5 | TraesCS3B01G245400 | chr3A | 98.124 | 533 | 10 | 0 | 3022 | 3554 | 392802208 | 392801676 | 0.000000e+00 | 929.0 |
6 | TraesCS3B01G245400 | chr3A | 86.552 | 699 | 58 | 19 | 243 | 914 | 447509921 | 447509232 | 0.000000e+00 | 737.0 |
7 | TraesCS3B01G245400 | chr3A | 100.000 | 30 | 0 | 0 | 2022 | 2051 | 392803074 | 392803045 | 4.960000e-04 | 56.5 |
8 | TraesCS3B01G245400 | chr3D | 92.529 | 1111 | 40 | 9 | 905 | 1984 | 295145469 | 295144371 | 0.000000e+00 | 1552.0 |
9 | TraesCS3B01G245400 | chr3D | 95.254 | 885 | 26 | 7 | 2104 | 2974 | 295144371 | 295143489 | 0.000000e+00 | 1387.0 |
10 | TraesCS3B01G245400 | chr3D | 93.390 | 711 | 33 | 6 | 203 | 906 | 570047475 | 570046772 | 0.000000e+00 | 1040.0 |
11 | TraesCS3B01G245400 | chr3D | 92.958 | 710 | 36 | 6 | 203 | 905 | 54344593 | 54343891 | 0.000000e+00 | 1022.0 |
12 | TraesCS3B01G245400 | chr3D | 97.561 | 533 | 13 | 0 | 3022 | 3554 | 295143510 | 295142978 | 0.000000e+00 | 913.0 |
13 | TraesCS3B01G245400 | chr3D | 95.755 | 212 | 7 | 2 | 1 | 212 | 54344825 | 54344616 | 1.220000e-89 | 340.0 |
14 | TraesCS3B01G245400 | chr3D | 95.283 | 212 | 8 | 2 | 1 | 212 | 570047707 | 570047498 | 5.690000e-88 | 335.0 |
15 | TraesCS3B01G245400 | chr4D | 92.877 | 702 | 36 | 6 | 203 | 897 | 278384915 | 278384221 | 0.000000e+00 | 1007.0 |
16 | TraesCS3B01G245400 | chr4D | 94.811 | 212 | 6 | 4 | 1 | 212 | 278385144 | 278384938 | 3.420000e-85 | 326.0 |
17 | TraesCS3B01G245400 | chr2A | 84.073 | 879 | 67 | 29 | 66 | 903 | 41587938 | 41588784 | 0.000000e+00 | 780.0 |
18 | TraesCS3B01G245400 | chr2A | 93.103 | 58 | 1 | 3 | 1975 | 2032 | 394759744 | 394759690 | 8.180000e-12 | 82.4 |
19 | TraesCS3B01G245400 | chr2A | 96.078 | 51 | 1 | 1 | 1975 | 2025 | 406450444 | 406450493 | 8.180000e-12 | 82.4 |
20 | TraesCS3B01G245400 | chr7B | 83.732 | 879 | 70 | 30 | 66 | 903 | 688746475 | 688747321 | 0.000000e+00 | 763.0 |
21 | TraesCS3B01G245400 | chr4A | 86.695 | 699 | 57 | 19 | 243 | 914 | 372314278 | 372313589 | 0.000000e+00 | 743.0 |
22 | TraesCS3B01G245400 | chr2B | 85.673 | 691 | 63 | 19 | 243 | 905 | 595162444 | 595163126 | 0.000000e+00 | 695.0 |
23 | TraesCS3B01G245400 | chr2B | 97.826 | 46 | 1 | 0 | 1981 | 2026 | 372955399 | 372955354 | 2.940000e-11 | 80.5 |
24 | TraesCS3B01G245400 | chrUn | 94.937 | 158 | 8 | 0 | 748 | 905 | 117285912 | 117285755 | 7.620000e-62 | 248.0 |
25 | TraesCS3B01G245400 | chr5B | 94.937 | 158 | 8 | 0 | 748 | 905 | 581763995 | 581763838 | 7.620000e-62 | 248.0 |
26 | TraesCS3B01G245400 | chr5B | 94.304 | 158 | 9 | 0 | 748 | 905 | 420935839 | 420935682 | 3.540000e-60 | 243.0 |
27 | TraesCS3B01G245400 | chr5B | 86.111 | 72 | 7 | 3 | 1957 | 2025 | 180913284 | 180913355 | 1.370000e-09 | 75.0 |
28 | TraesCS3B01G245400 | chr4B | 100.000 | 47 | 0 | 0 | 1979 | 2025 | 43788386 | 43788340 | 1.760000e-13 | 87.9 |
29 | TraesCS3B01G245400 | chr4B | 96.226 | 53 | 2 | 0 | 1973 | 2025 | 296169164 | 296169216 | 1.760000e-13 | 87.9 |
30 | TraesCS3B01G245400 | chr2D | 94.643 | 56 | 0 | 3 | 1971 | 2025 | 7661714 | 7661661 | 2.270000e-12 | 84.2 |
31 | TraesCS3B01G245400 | chr6B | 92.727 | 55 | 4 | 0 | 1971 | 2025 | 651412741 | 651412687 | 2.940000e-11 | 80.5 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G245400 | chr3B | 389262160 | 389265713 | 3553 | True | 6564.000 | 6564 | 100.000000 | 1 | 3554 | 1 | chr3B.!!$R1 | 3553 |
1 | TraesCS3B01G245400 | chr3B | 650839863 | 650840711 | 848 | True | 760.000 | 760 | 83.655000 | 66 | 903 | 1 | chr3B.!!$R2 | 837 |
2 | TraesCS3B01G245400 | chr3A | 392801676 | 392804316 | 2640 | True | 1020.125 | 1565 | 96.968250 | 905 | 3554 | 4 | chr3A.!!$R2 | 2649 |
3 | TraesCS3B01G245400 | chr3A | 447509232 | 447509921 | 689 | True | 737.000 | 737 | 86.552000 | 243 | 914 | 1 | chr3A.!!$R1 | 671 |
4 | TraesCS3B01G245400 | chr3D | 295142978 | 295145469 | 2491 | True | 1284.000 | 1552 | 95.114667 | 905 | 3554 | 3 | chr3D.!!$R2 | 2649 |
5 | TraesCS3B01G245400 | chr3D | 570046772 | 570047707 | 935 | True | 687.500 | 1040 | 94.336500 | 1 | 906 | 2 | chr3D.!!$R3 | 905 |
6 | TraesCS3B01G245400 | chr3D | 54343891 | 54344825 | 934 | True | 681.000 | 1022 | 94.356500 | 1 | 905 | 2 | chr3D.!!$R1 | 904 |
7 | TraesCS3B01G245400 | chr4D | 278384221 | 278385144 | 923 | True | 666.500 | 1007 | 93.844000 | 1 | 897 | 2 | chr4D.!!$R1 | 896 |
8 | TraesCS3B01G245400 | chr2A | 41587938 | 41588784 | 846 | False | 780.000 | 780 | 84.073000 | 66 | 903 | 1 | chr2A.!!$F1 | 837 |
9 | TraesCS3B01G245400 | chr7B | 688746475 | 688747321 | 846 | False | 763.000 | 763 | 83.732000 | 66 | 903 | 1 | chr7B.!!$F1 | 837 |
10 | TraesCS3B01G245400 | chr4A | 372313589 | 372314278 | 689 | True | 743.000 | 743 | 86.695000 | 243 | 914 | 1 | chr4A.!!$R1 | 671 |
11 | TraesCS3B01G245400 | chr2B | 595162444 | 595163126 | 682 | False | 695.000 | 695 | 85.673000 | 243 | 905 | 1 | chr2B.!!$F1 | 662 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
357 | 411 | 0.036022 | AGAGAAGGCACAGCTTGGAC | 59.964 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 | F |
1126 | 1214 | 0.029433 | GGCTGCGGCTGCTATAAAAC | 59.971 | 55.000 | 27.14 | 8.68 | 43.34 | 2.43 | F |
1455 | 1572 | 1.003580 | TGAGGCCTTGATGTCTTCCAC | 59.996 | 52.381 | 6.77 | 0.00 | 0.00 | 4.02 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1641 | 1759 | 0.036164 | CCACCGTCAAGATCCAACCA | 59.964 | 55.000 | 0.0 | 0.0 | 0.0 | 3.67 | R |
2268 | 2495 | 1.148498 | GCAGTAATCCCCCTTCCCG | 59.852 | 63.158 | 0.0 | 0.0 | 0.0 | 5.14 | R |
2679 | 2907 | 1.811965 | TGCAGAAAATCCACCGACATG | 59.188 | 47.619 | 0.0 | 0.0 | 0.0 | 3.21 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
44 | 45 | 4.245660 | CTGATTCAGACAAGGCGAGTAAA | 58.754 | 43.478 | 8.00 | 0.00 | 32.44 | 2.01 |
199 | 204 | 0.659957 | GCATCTAGCGGCAAAAGGAG | 59.340 | 55.000 | 1.45 | 0.00 | 0.00 | 3.69 |
240 | 276 | 1.127766 | CGCGCTGCACAACTACAAATA | 59.872 | 47.619 | 5.56 | 0.00 | 0.00 | 1.40 |
299 | 342 | 2.772568 | TTGGCTGTGTTTTGTCATCG | 57.227 | 45.000 | 0.00 | 0.00 | 0.00 | 3.84 |
307 | 350 | 3.996363 | TGTGTTTTGTCATCGATCTCCTG | 59.004 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
330 | 380 | 1.832912 | CAAGAATCCGAGGAGGGGG | 59.167 | 63.158 | 0.00 | 0.00 | 41.52 | 5.40 |
337 | 387 | 1.534235 | CCGAGGAGGGGGTATCTGG | 60.534 | 68.421 | 0.00 | 0.00 | 35.97 | 3.86 |
338 | 388 | 1.542175 | CGAGGAGGGGGTATCTGGA | 59.458 | 63.158 | 0.00 | 0.00 | 0.00 | 3.86 |
349 | 399 | 2.111384 | GGTATCTGGAGAGAAGGCACA | 58.889 | 52.381 | 0.00 | 0.00 | 0.00 | 4.57 |
357 | 411 | 0.036022 | AGAGAAGGCACAGCTTGGAC | 59.964 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
440 | 507 | 3.895041 | TGGTATTCCATGAGCTGTCGATA | 59.105 | 43.478 | 0.00 | 0.00 | 39.03 | 2.92 |
526 | 595 | 2.574322 | GACATGCTGCACACGTTTTAG | 58.426 | 47.619 | 3.57 | 0.00 | 0.00 | 1.85 |
641 | 715 | 5.980116 | CAGACCTAGGATTTAGTTCATGTCG | 59.020 | 44.000 | 17.98 | 0.00 | 0.00 | 4.35 |
642 | 716 | 5.657302 | AGACCTAGGATTTAGTTCATGTCGT | 59.343 | 40.000 | 17.98 | 0.00 | 0.00 | 4.34 |
643 | 717 | 5.661458 | ACCTAGGATTTAGTTCATGTCGTG | 58.339 | 41.667 | 17.98 | 0.00 | 0.00 | 4.35 |
730 | 806 | 8.311395 | TCTTATGGACACATGAGAACTTATCT | 57.689 | 34.615 | 0.00 | 0.00 | 44.01 | 1.98 |
798 | 876 | 9.877137 | GAAACGTATGTGCATAAATTGATATCA | 57.123 | 29.630 | 0.00 | 0.00 | 0.00 | 2.15 |
802 | 880 | 9.533983 | CGTATGTGCATAAATTGATATCAGAAC | 57.466 | 33.333 | 5.39 | 0.00 | 0.00 | 3.01 |
931 | 1016 | 6.451064 | AATAAACTTTCCGATGAACCATCC | 57.549 | 37.500 | 0.00 | 0.00 | 37.57 | 3.51 |
932 | 1017 | 2.420058 | ACTTTCCGATGAACCATCCC | 57.580 | 50.000 | 0.00 | 0.00 | 37.57 | 3.85 |
989 | 1074 | 1.959042 | AAGGCAGCCAATCGAGTATG | 58.041 | 50.000 | 15.80 | 0.00 | 0.00 | 2.39 |
990 | 1075 | 0.533755 | AGGCAGCCAATCGAGTATGC | 60.534 | 55.000 | 15.80 | 7.99 | 0.00 | 3.14 |
1031 | 1116 | 0.889186 | AGGGCGAACAAAGCGAATGT | 60.889 | 50.000 | 0.00 | 0.00 | 35.00 | 2.71 |
1036 | 1121 | 2.334454 | GCGAACAAAGCGAATGTAAACG | 59.666 | 45.455 | 0.00 | 0.00 | 0.00 | 3.60 |
1054 | 1142 | 1.633852 | CGCAAGCACAAGAGAGAGGC | 61.634 | 60.000 | 0.00 | 0.00 | 0.00 | 4.70 |
1126 | 1214 | 0.029433 | GGCTGCGGCTGCTATAAAAC | 59.971 | 55.000 | 27.14 | 8.68 | 43.34 | 2.43 |
1189 | 1277 | 2.099831 | CACGCCGGAGTCTCGTAC | 59.900 | 66.667 | 8.30 | 0.00 | 34.81 | 3.67 |
1455 | 1572 | 1.003580 | TGAGGCCTTGATGTCTTCCAC | 59.996 | 52.381 | 6.77 | 0.00 | 0.00 | 4.02 |
1456 | 1573 | 1.280421 | GAGGCCTTGATGTCTTCCACT | 59.720 | 52.381 | 6.77 | 0.00 | 0.00 | 4.00 |
1457 | 1574 | 1.707427 | AGGCCTTGATGTCTTCCACTT | 59.293 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
1458 | 1575 | 2.087646 | GGCCTTGATGTCTTCCACTTC | 58.912 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
1459 | 1576 | 2.087646 | GCCTTGATGTCTTCCACTTCC | 58.912 | 52.381 | 0.00 | 0.00 | 0.00 | 3.46 |
1460 | 1577 | 2.553028 | GCCTTGATGTCTTCCACTTCCA | 60.553 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
1602 | 1719 | 2.106511 | AGGGTATGAAATGGACCGATGG | 59.893 | 50.000 | 0.00 | 0.00 | 33.77 | 3.51 |
1884 | 2008 | 3.749226 | TGACAACATGTGCAAGGTATGA | 58.251 | 40.909 | 0.00 | 0.00 | 0.00 | 2.15 |
1904 | 2028 | 3.118629 | TGAACAGTAGGATGGCAGATCAC | 60.119 | 47.826 | 0.00 | 0.00 | 0.00 | 3.06 |
1909 | 2033 | 3.972638 | AGTAGGATGGCAGATCACTTCAT | 59.027 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
1917 | 2041 | 5.255687 | TGGCAGATCACTTCATGTGTTAAT | 58.744 | 37.500 | 0.00 | 0.00 | 46.27 | 1.40 |
1992 | 2118 | 7.941431 | ATTCACTTAGTATATACTCCCTCCG | 57.059 | 40.000 | 18.68 | 4.94 | 37.73 | 4.63 |
1993 | 2119 | 6.445451 | TCACTTAGTATATACTCCCTCCGT | 57.555 | 41.667 | 18.68 | 5.91 | 37.73 | 4.69 |
1994 | 2120 | 6.471146 | TCACTTAGTATATACTCCCTCCGTC | 58.529 | 44.000 | 18.68 | 0.00 | 37.73 | 4.79 |
1995 | 2121 | 6.271857 | TCACTTAGTATATACTCCCTCCGTCT | 59.728 | 42.308 | 18.68 | 0.00 | 37.73 | 4.18 |
1996 | 2122 | 6.594937 | CACTTAGTATATACTCCCTCCGTCTC | 59.405 | 46.154 | 18.68 | 0.00 | 37.73 | 3.36 |
1997 | 2123 | 6.271857 | ACTTAGTATATACTCCCTCCGTCTCA | 59.728 | 42.308 | 18.68 | 0.00 | 37.73 | 3.27 |
1998 | 2124 | 5.579753 | AGTATATACTCCCTCCGTCTCAA | 57.420 | 43.478 | 9.71 | 0.00 | 0.00 | 3.02 |
1999 | 2125 | 5.950023 | AGTATATACTCCCTCCGTCTCAAA | 58.050 | 41.667 | 9.71 | 0.00 | 0.00 | 2.69 |
2000 | 2126 | 6.371278 | AGTATATACTCCCTCCGTCTCAAAA | 58.629 | 40.000 | 9.71 | 0.00 | 0.00 | 2.44 |
2001 | 2127 | 7.011382 | AGTATATACTCCCTCCGTCTCAAAAT | 58.989 | 38.462 | 9.71 | 0.00 | 0.00 | 1.82 |
2002 | 2128 | 8.168725 | AGTATATACTCCCTCCGTCTCAAAATA | 58.831 | 37.037 | 9.71 | 0.00 | 0.00 | 1.40 |
2003 | 2129 | 7.850935 | ATATACTCCCTCCGTCTCAAAATAA | 57.149 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2004 | 2130 | 4.473477 | ACTCCCTCCGTCTCAAAATAAG | 57.527 | 45.455 | 0.00 | 0.00 | 0.00 | 1.73 |
2005 | 2131 | 3.838903 | ACTCCCTCCGTCTCAAAATAAGT | 59.161 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
2006 | 2132 | 4.184629 | CTCCCTCCGTCTCAAAATAAGTG | 58.815 | 47.826 | 0.00 | 0.00 | 0.00 | 3.16 |
2007 | 2133 | 3.581332 | TCCCTCCGTCTCAAAATAAGTGT | 59.419 | 43.478 | 0.00 | 0.00 | 0.00 | 3.55 |
2008 | 2134 | 3.933332 | CCCTCCGTCTCAAAATAAGTGTC | 59.067 | 47.826 | 0.00 | 0.00 | 0.00 | 3.67 |
2009 | 2135 | 4.322801 | CCCTCCGTCTCAAAATAAGTGTCT | 60.323 | 45.833 | 0.00 | 0.00 | 0.00 | 3.41 |
2010 | 2136 | 5.238583 | CCTCCGTCTCAAAATAAGTGTCTT | 58.761 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
2011 | 2137 | 5.120830 | CCTCCGTCTCAAAATAAGTGTCTTG | 59.879 | 44.000 | 0.00 | 0.00 | 0.00 | 3.02 |
2012 | 2138 | 5.849510 | TCCGTCTCAAAATAAGTGTCTTGA | 58.150 | 37.500 | 0.00 | 0.00 | 0.00 | 3.02 |
2013 | 2139 | 5.926542 | TCCGTCTCAAAATAAGTGTCTTGAG | 59.073 | 40.000 | 4.63 | 4.63 | 43.97 | 3.02 |
2014 | 2140 | 5.389935 | CCGTCTCAAAATAAGTGTCTTGAGC | 60.390 | 44.000 | 5.91 | 1.95 | 42.87 | 4.26 |
2015 | 2141 | 5.406780 | CGTCTCAAAATAAGTGTCTTGAGCT | 59.593 | 40.000 | 5.91 | 0.00 | 42.87 | 4.09 |
2016 | 2142 | 6.073548 | CGTCTCAAAATAAGTGTCTTGAGCTT | 60.074 | 38.462 | 5.91 | 0.00 | 42.87 | 3.74 |
2017 | 2143 | 7.116376 | CGTCTCAAAATAAGTGTCTTGAGCTTA | 59.884 | 37.037 | 5.91 | 0.00 | 42.87 | 3.09 |
2018 | 2144 | 8.439286 | GTCTCAAAATAAGTGTCTTGAGCTTAG | 58.561 | 37.037 | 5.91 | 0.00 | 42.87 | 2.18 |
2019 | 2145 | 8.150945 | TCTCAAAATAAGTGTCTTGAGCTTAGT | 58.849 | 33.333 | 5.91 | 0.00 | 42.87 | 2.24 |
2020 | 2146 | 9.424319 | CTCAAAATAAGTGTCTTGAGCTTAGTA | 57.576 | 33.333 | 0.00 | 0.00 | 38.63 | 1.82 |
2021 | 2147 | 9.204570 | TCAAAATAAGTGTCTTGAGCTTAGTAC | 57.795 | 33.333 | 0.00 | 0.00 | 0.00 | 2.73 |
2022 | 2148 | 8.988934 | CAAAATAAGTGTCTTGAGCTTAGTACA | 58.011 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
2023 | 2149 | 9.555727 | AAAATAAGTGTCTTGAGCTTAGTACAA | 57.444 | 29.630 | 0.00 | 0.00 | 0.00 | 2.41 |
2024 | 2150 | 9.555727 | AAATAAGTGTCTTGAGCTTAGTACAAA | 57.444 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
2025 | 2151 | 6.846325 | AAGTGTCTTGAGCTTAGTACAAAC | 57.154 | 37.500 | 0.00 | 0.00 | 0.00 | 2.93 |
2026 | 2152 | 4.982916 | AGTGTCTTGAGCTTAGTACAAACG | 59.017 | 41.667 | 0.00 | 0.00 | 0.00 | 3.60 |
2027 | 2153 | 4.980434 | GTGTCTTGAGCTTAGTACAAACGA | 59.020 | 41.667 | 0.00 | 0.00 | 0.00 | 3.85 |
2028 | 2154 | 5.634020 | GTGTCTTGAGCTTAGTACAAACGAT | 59.366 | 40.000 | 0.00 | 0.00 | 0.00 | 3.73 |
2029 | 2155 | 6.145696 | GTGTCTTGAGCTTAGTACAAACGATT | 59.854 | 38.462 | 0.00 | 0.00 | 0.00 | 3.34 |
2030 | 2156 | 6.145534 | TGTCTTGAGCTTAGTACAAACGATTG | 59.854 | 38.462 | 3.59 | 3.59 | 42.46 | 2.67 |
2031 | 2157 | 6.365247 | GTCTTGAGCTTAGTACAAACGATTGA | 59.635 | 38.462 | 12.79 | 0.00 | 38.94 | 2.57 |
2032 | 2158 | 7.063544 | GTCTTGAGCTTAGTACAAACGATTGAT | 59.936 | 37.037 | 12.79 | 0.62 | 38.94 | 2.57 |
2033 | 2159 | 8.248253 | TCTTGAGCTTAGTACAAACGATTGATA | 58.752 | 33.333 | 12.79 | 0.00 | 38.94 | 2.15 |
2034 | 2160 | 8.766000 | TTGAGCTTAGTACAAACGATTGATAA | 57.234 | 30.769 | 12.79 | 7.22 | 38.94 | 1.75 |
2035 | 2161 | 8.766000 | TGAGCTTAGTACAAACGATTGATAAA | 57.234 | 30.769 | 12.79 | 0.72 | 38.94 | 1.40 |
2036 | 2162 | 9.210329 | TGAGCTTAGTACAAACGATTGATAAAA | 57.790 | 29.630 | 12.79 | 1.04 | 38.94 | 1.52 |
2059 | 2185 | 4.852134 | ATTGTGTGTGCTGCATTTAGAA | 57.148 | 36.364 | 5.27 | 0.38 | 0.00 | 2.10 |
2064 | 2190 | 4.855388 | GTGTGTGCTGCATTTAGAATCTTG | 59.145 | 41.667 | 5.27 | 0.00 | 0.00 | 3.02 |
2065 | 2191 | 4.520111 | TGTGTGCTGCATTTAGAATCTTGT | 59.480 | 37.500 | 5.27 | 0.00 | 0.00 | 3.16 |
2093 | 2309 | 4.989279 | AGGCATGATGTATTGTCAAACC | 57.011 | 40.909 | 0.00 | 0.00 | 0.00 | 3.27 |
2165 | 2390 | 3.564053 | AAGTGGTGAAAACCGACCTTA | 57.436 | 42.857 | 0.00 | 0.00 | 32.98 | 2.69 |
2268 | 2495 | 4.621991 | AGCACTTCATATACATCGGTGAC | 58.378 | 43.478 | 0.65 | 0.00 | 0.00 | 3.67 |
2592 | 2819 | 2.699954 | CTCACGGTACAGGCAAGATTT | 58.300 | 47.619 | 0.00 | 0.00 | 0.00 | 2.17 |
2679 | 2907 | 5.049398 | TGTAACAAATAATTGCACCGACC | 57.951 | 39.130 | 0.00 | 0.00 | 40.34 | 4.79 |
2715 | 2943 | 7.977789 | TTTTCTGCACATTGTGTCTCTTATA | 57.022 | 32.000 | 17.64 | 0.00 | 35.75 | 0.98 |
2793 | 3021 | 1.352622 | ACAGGCAAGTTCAGGGACCA | 61.353 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
2968 | 3196 | 1.786937 | CCAGCTCCTGGTCTCATAGT | 58.213 | 55.000 | 3.09 | 0.00 | 45.82 | 2.12 |
2969 | 3197 | 2.114616 | CCAGCTCCTGGTCTCATAGTT | 58.885 | 52.381 | 3.09 | 0.00 | 45.82 | 2.24 |
2970 | 3198 | 2.503356 | CCAGCTCCTGGTCTCATAGTTT | 59.497 | 50.000 | 3.09 | 0.00 | 45.82 | 2.66 |
2971 | 3199 | 3.054802 | CCAGCTCCTGGTCTCATAGTTTT | 60.055 | 47.826 | 3.09 | 0.00 | 45.82 | 2.43 |
2972 | 3200 | 3.937706 | CAGCTCCTGGTCTCATAGTTTTG | 59.062 | 47.826 | 0.00 | 0.00 | 0.00 | 2.44 |
2973 | 3201 | 3.584848 | AGCTCCTGGTCTCATAGTTTTGT | 59.415 | 43.478 | 0.00 | 0.00 | 0.00 | 2.83 |
2974 | 3202 | 4.042187 | AGCTCCTGGTCTCATAGTTTTGTT | 59.958 | 41.667 | 0.00 | 0.00 | 0.00 | 2.83 |
2975 | 3203 | 4.762251 | GCTCCTGGTCTCATAGTTTTGTTT | 59.238 | 41.667 | 0.00 | 0.00 | 0.00 | 2.83 |
2976 | 3204 | 5.241728 | GCTCCTGGTCTCATAGTTTTGTTTT | 59.758 | 40.000 | 0.00 | 0.00 | 0.00 | 2.43 |
2977 | 3205 | 6.633500 | TCCTGGTCTCATAGTTTTGTTTTG | 57.367 | 37.500 | 0.00 | 0.00 | 0.00 | 2.44 |
2978 | 3206 | 6.126409 | TCCTGGTCTCATAGTTTTGTTTTGT | 58.874 | 36.000 | 0.00 | 0.00 | 0.00 | 2.83 |
2979 | 3207 | 6.605594 | TCCTGGTCTCATAGTTTTGTTTTGTT | 59.394 | 34.615 | 0.00 | 0.00 | 0.00 | 2.83 |
2980 | 3208 | 7.123547 | TCCTGGTCTCATAGTTTTGTTTTGTTT | 59.876 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
2981 | 3209 | 7.763985 | CCTGGTCTCATAGTTTTGTTTTGTTTT | 59.236 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
2982 | 3210 | 9.150348 | CTGGTCTCATAGTTTTGTTTTGTTTTT | 57.850 | 29.630 | 0.00 | 0.00 | 0.00 | 1.94 |
3004 | 3232 | 3.611766 | TTTTTGCGGGAAAAACCTTCA | 57.388 | 38.095 | 14.93 | 0.00 | 38.38 | 3.02 |
3005 | 3233 | 3.611766 | TTTTGCGGGAAAAACCTTCAA | 57.388 | 38.095 | 4.86 | 0.00 | 38.98 | 2.69 |
3006 | 3234 | 3.828875 | TTTGCGGGAAAAACCTTCAAT | 57.171 | 38.095 | 0.00 | 0.00 | 38.98 | 2.57 |
3007 | 3235 | 3.378911 | TTGCGGGAAAAACCTTCAATC | 57.621 | 42.857 | 0.00 | 0.00 | 38.98 | 2.67 |
3008 | 3236 | 2.593026 | TGCGGGAAAAACCTTCAATCT | 58.407 | 42.857 | 0.00 | 0.00 | 38.98 | 2.40 |
3009 | 3237 | 3.757270 | TGCGGGAAAAACCTTCAATCTA | 58.243 | 40.909 | 0.00 | 0.00 | 38.98 | 1.98 |
3010 | 3238 | 4.340617 | TGCGGGAAAAACCTTCAATCTAT | 58.659 | 39.130 | 0.00 | 0.00 | 38.98 | 1.98 |
3011 | 3239 | 4.770010 | TGCGGGAAAAACCTTCAATCTATT | 59.230 | 37.500 | 0.00 | 0.00 | 38.98 | 1.73 |
3012 | 3240 | 5.105917 | TGCGGGAAAAACCTTCAATCTATTC | 60.106 | 40.000 | 0.00 | 0.00 | 38.98 | 1.75 |
3013 | 3241 | 5.105917 | GCGGGAAAAACCTTCAATCTATTCA | 60.106 | 40.000 | 0.00 | 0.00 | 38.98 | 2.57 |
3014 | 3242 | 6.405842 | GCGGGAAAAACCTTCAATCTATTCAT | 60.406 | 38.462 | 0.00 | 0.00 | 38.98 | 2.57 |
3015 | 3243 | 7.196331 | CGGGAAAAACCTTCAATCTATTCATC | 58.804 | 38.462 | 0.00 | 0.00 | 38.98 | 2.92 |
3016 | 3244 | 7.196331 | GGGAAAAACCTTCAATCTATTCATCG | 58.804 | 38.462 | 0.00 | 0.00 | 38.98 | 3.84 |
3017 | 3245 | 7.148069 | GGGAAAAACCTTCAATCTATTCATCGT | 60.148 | 37.037 | 0.00 | 0.00 | 38.98 | 3.73 |
3018 | 3246 | 7.910683 | GGAAAAACCTTCAATCTATTCATCGTC | 59.089 | 37.037 | 0.00 | 0.00 | 35.41 | 4.20 |
3019 | 3247 | 7.921786 | AAAACCTTCAATCTATTCATCGTCA | 57.078 | 32.000 | 0.00 | 0.00 | 0.00 | 4.35 |
3020 | 3248 | 6.910536 | AACCTTCAATCTATTCATCGTCAC | 57.089 | 37.500 | 0.00 | 0.00 | 0.00 | 3.67 |
3021 | 3249 | 5.360591 | ACCTTCAATCTATTCATCGTCACC | 58.639 | 41.667 | 0.00 | 0.00 | 0.00 | 4.02 |
3022 | 3250 | 5.129485 | ACCTTCAATCTATTCATCGTCACCT | 59.871 | 40.000 | 0.00 | 0.00 | 0.00 | 4.00 |
3023 | 3251 | 5.694006 | CCTTCAATCTATTCATCGTCACCTC | 59.306 | 44.000 | 0.00 | 0.00 | 0.00 | 3.85 |
3024 | 3252 | 5.201713 | TCAATCTATTCATCGTCACCTCC | 57.798 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
3025 | 3253 | 4.895889 | TCAATCTATTCATCGTCACCTCCT | 59.104 | 41.667 | 0.00 | 0.00 | 0.00 | 3.69 |
3026 | 3254 | 4.862902 | ATCTATTCATCGTCACCTCCTG | 57.137 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
3046 | 3274 | 7.233553 | CCTCCTGGTCTCATAGTTTATGTATGA | 59.766 | 40.741 | 0.00 | 0.00 | 37.45 | 2.15 |
3318 | 3546 | 7.094634 | GGATCTAACTCAAACAATCTTTCTGCA | 60.095 | 37.037 | 0.00 | 0.00 | 0.00 | 4.41 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
88 | 89 | 3.118811 | TCATCTCCATGCATGTTGTACGA | 60.119 | 43.478 | 24.58 | 12.58 | 0.00 | 3.43 |
199 | 204 | 0.104671 | CAAGAGCCCTAGAGAGCTGC | 59.895 | 60.000 | 6.62 | 0.00 | 40.11 | 5.25 |
240 | 276 | 4.501058 | GGAGAGAAAGAAACACGTACCTGT | 60.501 | 45.833 | 0.00 | 0.00 | 0.00 | 4.00 |
299 | 342 | 3.497640 | CGGATTCTTGCAATCAGGAGATC | 59.502 | 47.826 | 0.00 | 0.81 | 31.90 | 2.75 |
307 | 350 | 2.216898 | CCTCCTCGGATTCTTGCAATC | 58.783 | 52.381 | 0.00 | 0.00 | 33.16 | 2.67 |
330 | 380 | 2.482839 | GCTGTGCCTTCTCTCCAGATAC | 60.483 | 54.545 | 0.00 | 0.00 | 0.00 | 2.24 |
337 | 387 | 0.322975 | TCCAAGCTGTGCCTTCTCTC | 59.677 | 55.000 | 0.00 | 0.00 | 0.00 | 3.20 |
338 | 388 | 0.036022 | GTCCAAGCTGTGCCTTCTCT | 59.964 | 55.000 | 0.00 | 0.00 | 0.00 | 3.10 |
349 | 399 | 1.202330 | CCTCTCCAGATGTCCAAGCT | 58.798 | 55.000 | 0.00 | 0.00 | 0.00 | 3.74 |
357 | 411 | 1.070445 | CCTAAGCAGCCTCTCCAGATG | 59.930 | 57.143 | 0.00 | 0.00 | 0.00 | 2.90 |
440 | 507 | 5.596836 | TGGAAGACAATTTTCTGCAACTT | 57.403 | 34.783 | 2.01 | 0.00 | 0.00 | 2.66 |
526 | 595 | 3.058639 | GGAATGGAAATCTGCTATGTCGC | 60.059 | 47.826 | 0.00 | 0.00 | 0.00 | 5.19 |
641 | 715 | 2.017049 | CTAGGCATACCCACAAAGCAC | 58.983 | 52.381 | 0.00 | 0.00 | 36.11 | 4.40 |
642 | 716 | 1.064758 | CCTAGGCATACCCACAAAGCA | 60.065 | 52.381 | 0.00 | 0.00 | 36.11 | 3.91 |
643 | 717 | 1.211949 | TCCTAGGCATACCCACAAAGC | 59.788 | 52.381 | 2.96 | 0.00 | 36.11 | 3.51 |
776 | 852 | 9.533983 | GTTCTGATATCAATTTATGCACATACG | 57.466 | 33.333 | 6.90 | 0.00 | 0.00 | 3.06 |
798 | 876 | 8.383175 | TCCCACATCTTAAACTTTGATAGTTCT | 58.617 | 33.333 | 0.00 | 0.00 | 46.34 | 3.01 |
918 | 1003 | 1.618837 | ACGATAGGGATGGTTCATCGG | 59.381 | 52.381 | 7.14 | 0.00 | 42.02 | 4.18 |
931 | 1016 | 2.609459 | GGTGCTTTGTCATCACGATAGG | 59.391 | 50.000 | 0.00 | 0.00 | 43.77 | 2.57 |
932 | 1017 | 3.261580 | TGGTGCTTTGTCATCACGATAG | 58.738 | 45.455 | 0.00 | 0.00 | 46.19 | 2.08 |
989 | 1074 | 1.129811 | GCCGTACCATAACTGTTGTGC | 59.870 | 52.381 | 11.29 | 0.42 | 0.00 | 4.57 |
990 | 1075 | 1.392168 | CGCCGTACCATAACTGTTGTG | 59.608 | 52.381 | 9.97 | 9.97 | 0.00 | 3.33 |
1031 | 1116 | 3.059884 | CTCTCTCTTGTGCTTGCGTTTA | 58.940 | 45.455 | 0.00 | 0.00 | 0.00 | 2.01 |
1036 | 1121 | 1.304509 | GGCCTCTCTCTTGTGCTTGC | 61.305 | 60.000 | 0.00 | 0.00 | 0.00 | 4.01 |
1040 | 1125 | 0.250467 | TTGTGGCCTCTCTCTTGTGC | 60.250 | 55.000 | 3.32 | 0.00 | 0.00 | 4.57 |
1105 | 1193 | 2.587322 | TTTATAGCAGCCGCAGCCGT | 62.587 | 55.000 | 3.83 | 0.00 | 42.27 | 5.68 |
1106 | 1194 | 1.436195 | TTTTATAGCAGCCGCAGCCG | 61.436 | 55.000 | 3.83 | 0.00 | 42.27 | 5.52 |
1107 | 1195 | 0.029433 | GTTTTATAGCAGCCGCAGCC | 59.971 | 55.000 | 3.83 | 0.00 | 42.27 | 4.85 |
1108 | 1196 | 0.029433 | GGTTTTATAGCAGCCGCAGC | 59.971 | 55.000 | 0.00 | 0.00 | 42.27 | 5.25 |
1109 | 1197 | 1.064060 | GTGGTTTTATAGCAGCCGCAG | 59.936 | 52.381 | 0.00 | 0.00 | 42.27 | 5.18 |
1110 | 1198 | 1.091537 | GTGGTTTTATAGCAGCCGCA | 58.908 | 50.000 | 0.00 | 0.00 | 42.27 | 5.69 |
1111 | 1199 | 1.091537 | TGTGGTTTTATAGCAGCCGC | 58.908 | 50.000 | 0.00 | 0.00 | 34.32 | 6.53 |
1112 | 1200 | 1.400494 | GGTGTGGTTTTATAGCAGCCG | 59.600 | 52.381 | 0.00 | 0.00 | 34.32 | 5.52 |
1126 | 1214 | 1.674651 | TCTCGGACTCTCGGTGTGG | 60.675 | 63.158 | 0.00 | 0.00 | 0.00 | 4.17 |
1368 | 1477 | 1.922570 | ATCGTGTTCGTACCATGAGC | 58.077 | 50.000 | 0.00 | 0.00 | 38.33 | 4.26 |
1455 | 1572 | 1.142465 | CCCATCATCCTGTCCTGGAAG | 59.858 | 57.143 | 0.00 | 0.00 | 39.85 | 3.46 |
1456 | 1573 | 1.216064 | CCCATCATCCTGTCCTGGAA | 58.784 | 55.000 | 0.00 | 0.00 | 39.85 | 3.53 |
1457 | 1574 | 0.695462 | CCCCATCATCCTGTCCTGGA | 60.695 | 60.000 | 0.00 | 0.00 | 40.82 | 3.86 |
1458 | 1575 | 1.713005 | CCCCCATCATCCTGTCCTGG | 61.713 | 65.000 | 0.00 | 0.00 | 0.00 | 4.45 |
1459 | 1576 | 0.695462 | TCCCCCATCATCCTGTCCTG | 60.695 | 60.000 | 0.00 | 0.00 | 0.00 | 3.86 |
1460 | 1577 | 0.401105 | CTCCCCCATCATCCTGTCCT | 60.401 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1602 | 1719 | 0.447801 | AGAACACATCGGCAAATCGC | 59.552 | 50.000 | 0.00 | 0.00 | 41.28 | 4.58 |
1641 | 1759 | 0.036164 | CCACCGTCAAGATCCAACCA | 59.964 | 55.000 | 0.00 | 0.00 | 0.00 | 3.67 |
1642 | 1760 | 0.036306 | ACCACCGTCAAGATCCAACC | 59.964 | 55.000 | 0.00 | 0.00 | 0.00 | 3.77 |
1853 | 1977 | 0.538057 | CATGTTGTCAGGGCACAGGT | 60.538 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
1884 | 2008 | 3.110705 | AGTGATCTGCCATCCTACTGTT | 58.889 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
1909 | 2033 | 6.220201 | TCGAGTGAATCTGTGAATTAACACA | 58.780 | 36.000 | 0.00 | 0.00 | 46.45 | 3.72 |
1917 | 2041 | 2.995939 | GTGCATCGAGTGAATCTGTGAA | 59.004 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
1975 | 2101 | 6.692849 | TTGAGACGGAGGGAGTATATACTA | 57.307 | 41.667 | 15.42 | 0.00 | 36.50 | 1.82 |
1984 | 2110 | 4.184629 | CACTTATTTTGAGACGGAGGGAG | 58.815 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
1985 | 2111 | 3.581332 | ACACTTATTTTGAGACGGAGGGA | 59.419 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
1986 | 2112 | 3.933332 | GACACTTATTTTGAGACGGAGGG | 59.067 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
1988 | 2114 | 5.926542 | TCAAGACACTTATTTTGAGACGGAG | 59.073 | 40.000 | 0.00 | 0.00 | 0.00 | 4.63 |
1989 | 2115 | 5.849510 | TCAAGACACTTATTTTGAGACGGA | 58.150 | 37.500 | 0.00 | 0.00 | 0.00 | 4.69 |
1990 | 2116 | 5.389935 | GCTCAAGACACTTATTTTGAGACGG | 60.390 | 44.000 | 15.10 | 0.00 | 45.82 | 4.79 |
1991 | 2117 | 5.406780 | AGCTCAAGACACTTATTTTGAGACG | 59.593 | 40.000 | 15.10 | 0.00 | 45.82 | 4.18 |
1992 | 2118 | 6.793492 | AGCTCAAGACACTTATTTTGAGAC | 57.207 | 37.500 | 15.10 | 7.85 | 45.82 | 3.36 |
1993 | 2119 | 8.150945 | ACTAAGCTCAAGACACTTATTTTGAGA | 58.849 | 33.333 | 15.10 | 0.00 | 45.82 | 3.27 |
1994 | 2120 | 8.316640 | ACTAAGCTCAAGACACTTATTTTGAG | 57.683 | 34.615 | 8.33 | 8.33 | 45.75 | 3.02 |
1995 | 2121 | 9.204570 | GTACTAAGCTCAAGACACTTATTTTGA | 57.795 | 33.333 | 3.19 | 0.00 | 0.00 | 2.69 |
1996 | 2122 | 8.988934 | TGTACTAAGCTCAAGACACTTATTTTG | 58.011 | 33.333 | 3.19 | 0.00 | 0.00 | 2.44 |
1997 | 2123 | 9.555727 | TTGTACTAAGCTCAAGACACTTATTTT | 57.444 | 29.630 | 3.19 | 0.00 | 0.00 | 1.82 |
1998 | 2124 | 9.555727 | TTTGTACTAAGCTCAAGACACTTATTT | 57.444 | 29.630 | 3.19 | 0.00 | 0.00 | 1.40 |
1999 | 2125 | 8.989980 | GTTTGTACTAAGCTCAAGACACTTATT | 58.010 | 33.333 | 3.19 | 0.00 | 0.00 | 1.40 |
2000 | 2126 | 7.328737 | CGTTTGTACTAAGCTCAAGACACTTAT | 59.671 | 37.037 | 3.19 | 0.00 | 0.00 | 1.73 |
2001 | 2127 | 6.639686 | CGTTTGTACTAAGCTCAAGACACTTA | 59.360 | 38.462 | 3.19 | 0.00 | 0.00 | 2.24 |
2002 | 2128 | 5.462398 | CGTTTGTACTAAGCTCAAGACACTT | 59.538 | 40.000 | 3.19 | 0.00 | 0.00 | 3.16 |
2003 | 2129 | 4.982916 | CGTTTGTACTAAGCTCAAGACACT | 59.017 | 41.667 | 3.19 | 0.00 | 0.00 | 3.55 |
2004 | 2130 | 4.980434 | TCGTTTGTACTAAGCTCAAGACAC | 59.020 | 41.667 | 3.19 | 2.09 | 0.00 | 3.67 |
2005 | 2131 | 5.190992 | TCGTTTGTACTAAGCTCAAGACA | 57.809 | 39.130 | 3.19 | 0.00 | 0.00 | 3.41 |
2006 | 2132 | 6.365247 | TCAATCGTTTGTACTAAGCTCAAGAC | 59.635 | 38.462 | 6.14 | 0.00 | 34.32 | 3.01 |
2007 | 2133 | 6.452242 | TCAATCGTTTGTACTAAGCTCAAGA | 58.548 | 36.000 | 6.14 | 0.00 | 34.32 | 3.02 |
2008 | 2134 | 6.706055 | TCAATCGTTTGTACTAAGCTCAAG | 57.294 | 37.500 | 6.14 | 0.00 | 34.32 | 3.02 |
2009 | 2135 | 8.766000 | TTATCAATCGTTTGTACTAAGCTCAA | 57.234 | 30.769 | 6.14 | 0.00 | 34.32 | 3.02 |
2010 | 2136 | 8.766000 | TTTATCAATCGTTTGTACTAAGCTCA | 57.234 | 30.769 | 6.14 | 0.00 | 34.32 | 4.26 |
2020 | 2146 | 9.906660 | ACACACAATATTTTATCAATCGTTTGT | 57.093 | 25.926 | 6.14 | 0.00 | 34.32 | 2.83 |
2022 | 2148 | 8.859156 | GCACACACAATATTTTATCAATCGTTT | 58.141 | 29.630 | 0.00 | 0.00 | 0.00 | 3.60 |
2023 | 2149 | 8.243426 | AGCACACACAATATTTTATCAATCGTT | 58.757 | 29.630 | 0.00 | 0.00 | 0.00 | 3.85 |
2024 | 2150 | 7.697710 | CAGCACACACAATATTTTATCAATCGT | 59.302 | 33.333 | 0.00 | 0.00 | 0.00 | 3.73 |
2025 | 2151 | 7.305590 | GCAGCACACACAATATTTTATCAATCG | 60.306 | 37.037 | 0.00 | 0.00 | 0.00 | 3.34 |
2026 | 2152 | 7.488792 | TGCAGCACACACAATATTTTATCAATC | 59.511 | 33.333 | 0.00 | 0.00 | 0.00 | 2.67 |
2027 | 2153 | 7.321908 | TGCAGCACACACAATATTTTATCAAT | 58.678 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
2028 | 2154 | 6.685657 | TGCAGCACACACAATATTTTATCAA | 58.314 | 32.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2029 | 2155 | 6.264841 | TGCAGCACACACAATATTTTATCA | 57.735 | 33.333 | 0.00 | 0.00 | 0.00 | 2.15 |
2030 | 2156 | 7.760131 | AATGCAGCACACACAATATTTTATC | 57.240 | 32.000 | 0.00 | 0.00 | 0.00 | 1.75 |
2031 | 2157 | 9.304731 | CTAAATGCAGCACACACAATATTTTAT | 57.695 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
2032 | 2158 | 8.518702 | TCTAAATGCAGCACACACAATATTTTA | 58.481 | 29.630 | 0.00 | 0.00 | 0.00 | 1.52 |
2033 | 2159 | 7.377398 | TCTAAATGCAGCACACACAATATTTT | 58.623 | 30.769 | 0.00 | 0.00 | 0.00 | 1.82 |
2034 | 2160 | 6.923012 | TCTAAATGCAGCACACACAATATTT | 58.077 | 32.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2035 | 2161 | 6.513806 | TCTAAATGCAGCACACACAATATT | 57.486 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
2036 | 2162 | 6.513806 | TTCTAAATGCAGCACACACAATAT | 57.486 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
2037 | 2163 | 5.956068 | TTCTAAATGCAGCACACACAATA | 57.044 | 34.783 | 0.00 | 0.00 | 0.00 | 1.90 |
2038 | 2164 | 4.852134 | TTCTAAATGCAGCACACACAAT | 57.148 | 36.364 | 0.00 | 0.00 | 0.00 | 2.71 |
2039 | 2165 | 4.520111 | AGATTCTAAATGCAGCACACACAA | 59.480 | 37.500 | 0.00 | 0.00 | 0.00 | 3.33 |
2040 | 2166 | 4.074259 | AGATTCTAAATGCAGCACACACA | 58.926 | 39.130 | 0.00 | 0.00 | 0.00 | 3.72 |
2041 | 2167 | 4.691860 | AGATTCTAAATGCAGCACACAC | 57.308 | 40.909 | 0.00 | 0.00 | 0.00 | 3.82 |
2064 | 2190 | 9.489084 | TTGACAATACATCATGCCTAATACTAC | 57.511 | 33.333 | 0.00 | 0.00 | 0.00 | 2.73 |
2093 | 2309 | 8.914328 | TCAGCACACACAATATTTTATCAATG | 57.086 | 30.769 | 0.00 | 0.00 | 0.00 | 2.82 |
2165 | 2390 | 5.393866 | AGTGAAATTTAGTTCATGGGTGGT | 58.606 | 37.500 | 0.00 | 0.00 | 39.61 | 4.16 |
2225 | 2452 | 1.486310 | TGTTCTTGGCACTGTCTGTCT | 59.514 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
2268 | 2495 | 1.148498 | GCAGTAATCCCCCTTCCCG | 59.852 | 63.158 | 0.00 | 0.00 | 0.00 | 5.14 |
2427 | 2654 | 2.880890 | CAGCTTGTTCACCAGCTTAAGT | 59.119 | 45.455 | 4.02 | 0.00 | 35.17 | 2.24 |
2679 | 2907 | 1.811965 | TGCAGAAAATCCACCGACATG | 59.188 | 47.619 | 0.00 | 0.00 | 0.00 | 3.21 |
2705 | 2933 | 6.986817 | GCTATCCTGCAGTTTTATAAGAGACA | 59.013 | 38.462 | 13.81 | 0.00 | 0.00 | 3.41 |
2715 | 2943 | 3.251729 | CGCATATGCTATCCTGCAGTTTT | 59.748 | 43.478 | 24.56 | 0.00 | 46.71 | 2.43 |
2984 | 3212 | 3.611766 | TGAAGGTTTTTCCCGCAAAAA | 57.388 | 38.095 | 0.46 | 0.46 | 40.93 | 1.94 |
2985 | 3213 | 3.611766 | TTGAAGGTTTTTCCCGCAAAA | 57.388 | 38.095 | 0.00 | 0.00 | 36.75 | 2.44 |
2986 | 3214 | 3.386402 | AGATTGAAGGTTTTTCCCGCAAA | 59.614 | 39.130 | 0.00 | 0.00 | 34.83 | 3.68 |
2987 | 3215 | 2.962421 | AGATTGAAGGTTTTTCCCGCAA | 59.038 | 40.909 | 0.00 | 0.00 | 36.75 | 4.85 |
2988 | 3216 | 2.593026 | AGATTGAAGGTTTTTCCCGCA | 58.407 | 42.857 | 0.00 | 0.00 | 36.75 | 5.69 |
2989 | 3217 | 4.983671 | ATAGATTGAAGGTTTTTCCCGC | 57.016 | 40.909 | 0.00 | 0.00 | 36.75 | 6.13 |
2990 | 3218 | 6.509418 | TGAATAGATTGAAGGTTTTTCCCG | 57.491 | 37.500 | 0.00 | 0.00 | 36.75 | 5.14 |
2991 | 3219 | 7.148069 | ACGATGAATAGATTGAAGGTTTTTCCC | 60.148 | 37.037 | 0.00 | 0.00 | 36.75 | 3.97 |
2992 | 3220 | 7.762382 | ACGATGAATAGATTGAAGGTTTTTCC | 58.238 | 34.615 | 0.00 | 0.00 | 0.00 | 3.13 |
2993 | 3221 | 8.450964 | TGACGATGAATAGATTGAAGGTTTTTC | 58.549 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
2994 | 3222 | 8.237267 | GTGACGATGAATAGATTGAAGGTTTTT | 58.763 | 33.333 | 0.00 | 0.00 | 0.00 | 1.94 |
2995 | 3223 | 7.148239 | GGTGACGATGAATAGATTGAAGGTTTT | 60.148 | 37.037 | 0.00 | 0.00 | 0.00 | 2.43 |
2996 | 3224 | 6.316390 | GGTGACGATGAATAGATTGAAGGTTT | 59.684 | 38.462 | 0.00 | 0.00 | 0.00 | 3.27 |
2997 | 3225 | 5.817816 | GGTGACGATGAATAGATTGAAGGTT | 59.182 | 40.000 | 0.00 | 0.00 | 0.00 | 3.50 |
2998 | 3226 | 5.129485 | AGGTGACGATGAATAGATTGAAGGT | 59.871 | 40.000 | 0.00 | 0.00 | 0.00 | 3.50 |
2999 | 3227 | 5.605534 | AGGTGACGATGAATAGATTGAAGG | 58.394 | 41.667 | 0.00 | 0.00 | 0.00 | 3.46 |
3000 | 3228 | 5.694006 | GGAGGTGACGATGAATAGATTGAAG | 59.306 | 44.000 | 0.00 | 0.00 | 0.00 | 3.02 |
3001 | 3229 | 5.363868 | AGGAGGTGACGATGAATAGATTGAA | 59.636 | 40.000 | 0.00 | 0.00 | 0.00 | 2.69 |
3002 | 3230 | 4.895889 | AGGAGGTGACGATGAATAGATTGA | 59.104 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
3003 | 3231 | 4.987285 | CAGGAGGTGACGATGAATAGATTG | 59.013 | 45.833 | 0.00 | 0.00 | 0.00 | 2.67 |
3004 | 3232 | 4.039730 | CCAGGAGGTGACGATGAATAGATT | 59.960 | 45.833 | 0.00 | 0.00 | 0.00 | 2.40 |
3005 | 3233 | 3.576118 | CCAGGAGGTGACGATGAATAGAT | 59.424 | 47.826 | 0.00 | 0.00 | 0.00 | 1.98 |
3006 | 3234 | 2.959030 | CCAGGAGGTGACGATGAATAGA | 59.041 | 50.000 | 0.00 | 0.00 | 0.00 | 1.98 |
3007 | 3235 | 3.377346 | CCAGGAGGTGACGATGAATAG | 57.623 | 52.381 | 0.00 | 0.00 | 0.00 | 1.73 |
3015 | 3243 | 9.753591 | CATAAACTATGAGACCAGGAGGTGACG | 62.754 | 48.148 | 0.00 | 0.00 | 42.92 | 4.35 |
3016 | 3244 | 6.684111 | CATAAACTATGAGACCAGGAGGTGAC | 60.684 | 46.154 | 0.00 | 0.00 | 42.92 | 3.67 |
3017 | 3245 | 5.363868 | CATAAACTATGAGACCAGGAGGTGA | 59.636 | 44.000 | 0.00 | 0.00 | 42.92 | 4.02 |
3018 | 3246 | 5.129485 | ACATAAACTATGAGACCAGGAGGTG | 59.871 | 44.000 | 0.00 | 0.00 | 43.11 | 4.00 |
3019 | 3247 | 5.281314 | ACATAAACTATGAGACCAGGAGGT | 58.719 | 41.667 | 0.00 | 0.00 | 44.54 | 3.85 |
3020 | 3248 | 5.878406 | ACATAAACTATGAGACCAGGAGG | 57.122 | 43.478 | 0.00 | 0.00 | 39.45 | 4.30 |
3021 | 3249 | 8.183104 | TCATACATAAACTATGAGACCAGGAG | 57.817 | 38.462 | 0.00 | 0.00 | 39.45 | 3.69 |
3022 | 3250 | 7.255977 | GCTCATACATAAACTATGAGACCAGGA | 60.256 | 40.741 | 16.25 | 0.00 | 45.78 | 3.86 |
3023 | 3251 | 6.870965 | GCTCATACATAAACTATGAGACCAGG | 59.129 | 42.308 | 16.25 | 0.00 | 45.78 | 4.45 |
3024 | 3252 | 7.383572 | GTGCTCATACATAAACTATGAGACCAG | 59.616 | 40.741 | 16.25 | 0.00 | 45.78 | 4.00 |
3025 | 3253 | 7.210174 | GTGCTCATACATAAACTATGAGACCA | 58.790 | 38.462 | 16.25 | 5.90 | 45.78 | 4.02 |
3026 | 3254 | 6.363626 | CGTGCTCATACATAAACTATGAGACC | 59.636 | 42.308 | 16.25 | 6.99 | 45.78 | 3.85 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.