Multiple sequence alignment - TraesCS3B01G244300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G244300 chr3B 100.000 5450 0 0 1 5450 386384526 386379077 0.000000e+00 10065.0
1 TraesCS3B01G244300 chr3B 100.000 2813 0 0 5828 8640 386378699 386375887 0.000000e+00 5195.0
2 TraesCS3B01G244300 chr3B 83.713 571 46 8 5 553 762891394 762890849 6.020000e-136 496.0
3 TraesCS3B01G244300 chr3B 82.984 382 54 5 4625 4996 418440323 418439943 1.390000e-87 335.0
4 TraesCS3B01G244300 chr3B 83.333 84 12 2 7482 7564 691448353 691448271 9.300000e-10 76.8
5 TraesCS3B01G244300 chr3D 97.284 3424 75 7 2039 5450 292367588 292371005 0.000000e+00 5792.0
6 TraesCS3B01G244300 chr3D 94.868 2728 89 22 5828 8522 292371050 292373759 0.000000e+00 4215.0
7 TraesCS3B01G244300 chr3D 95.284 1145 18 8 796 1932 292366473 292367589 0.000000e+00 1783.0
8 TraesCS3B01G244300 chr3D 80.857 350 53 7 4625 4960 302947107 302947456 6.650000e-66 263.0
9 TraesCS3B01G244300 chr3D 94.915 118 5 1 1927 2043 381640923 381640806 5.330000e-42 183.0
10 TraesCS3B01G244300 chr3D 93.878 49 3 0 7514 7562 498118800 498118752 3.350000e-09 75.0
11 TraesCS3B01G244300 chr3A 96.749 2861 70 9 2039 4885 385530786 385527935 0.000000e+00 4747.0
12 TraesCS3B01G244300 chr3A 96.448 2703 78 11 5828 8522 385527284 385524592 0.000000e+00 4444.0
13 TraesCS3B01G244300 chr3A 94.906 962 23 4 796 1751 385531940 385530999 0.000000e+00 1482.0
14 TraesCS3B01G244300 chr3A 96.791 561 17 1 4890 5450 385527888 385527329 0.000000e+00 935.0
15 TraesCS3B01G244300 chr3A 95.082 183 8 1 1750 1932 385530966 385530785 3.950000e-73 287.0
16 TraesCS3B01G244300 chr3A 93.600 125 6 1 1920 2044 707385979 707385857 1.480000e-42 185.0
17 TraesCS3B01G244300 chr3A 96.396 111 4 0 1934 2044 65345866 65345756 5.330000e-42 183.0
18 TraesCS3B01G244300 chr3A 94.017 117 7 0 1924 2040 114429434 114429550 2.480000e-40 178.0
19 TraesCS3B01G244300 chr2D 88.225 552 40 4 1 552 102961654 102962180 3.400000e-178 636.0
20 TraesCS3B01G244300 chr2D 87.283 519 40 5 1 519 96676933 96676441 3.500000e-158 569.0
21 TraesCS3B01G244300 chr2D 87.379 103 12 1 7449 7551 622228277 622228378 5.480000e-22 117.0
22 TraesCS3B01G244300 chr4D 87.884 553 42 4 1 553 301537455 301537982 2.050000e-175 627.0
23 TraesCS3B01G244300 chr4D 98.361 61 1 0 8559 8619 207361828 207361888 3.300000e-19 108.0
24 TraesCS3B01G244300 chr4D 98.361 61 1 0 8559 8619 393153647 393153587 3.300000e-19 108.0
25 TraesCS3B01G244300 chr1A 87.770 556 42 5 1 555 589693900 589693370 2.050000e-175 627.0
26 TraesCS3B01G244300 chr6B 87.184 554 63 5 1 553 284656157 284655611 2.650000e-174 623.0
27 TraesCS3B01G244300 chr6B 96.296 135 5 0 1 135 452090379 452090513 1.130000e-53 222.0
28 TraesCS3B01G244300 chr5B 86.933 551 43 10 5 553 531556121 531555598 7.470000e-165 592.0
29 TraesCS3B01G244300 chr5B 86.182 550 49 10 5 553 244151902 244151379 3.500000e-158 569.0
30 TraesCS3B01G244300 chr5B 86.047 516 44 6 38 553 63564396 63564883 5.940000e-146 529.0
31 TraesCS3B01G244300 chr5B 90.000 250 16 2 2579 2825 56071090 56071333 1.810000e-81 315.0
32 TraesCS3B01G244300 chr5B 93.023 129 7 2 1913 2040 167283553 167283426 4.120000e-43 187.0
33 TraesCS3B01G244300 chr5B 96.396 111 4 0 1934 2044 677288734 677288624 5.330000e-42 183.0
34 TraesCS3B01G244300 chr5B 88.785 107 11 1 7458 7564 190119477 190119372 7.040000e-26 130.0
35 TraesCS3B01G244300 chr5B 100.000 28 0 0 8531 8558 303230859 303230886 1.600000e-02 52.8
36 TraesCS3B01G244300 chr6D 86.051 552 50 7 5 555 13672143 13671618 1.260000e-157 568.0
37 TraesCS3B01G244300 chr6D 92.308 234 15 2 2580 2810 459190562 459190329 6.470000e-86 329.0
38 TraesCS3B01G244300 chr6D 98.361 61 1 0 8559 8619 389248327 389248267 3.300000e-19 108.0
39 TraesCS3B01G244300 chr6D 98.361 61 1 0 8559 8619 389253122 389253062 3.300000e-19 108.0
40 TraesCS3B01G244300 chr6D 100.000 37 0 0 8559 8595 253593047 253593011 1.560000e-07 69.4
41 TraesCS3B01G244300 chr7B 85.895 553 50 7 1 553 595289960 595289436 1.630000e-156 564.0
42 TraesCS3B01G244300 chr7B 100.000 28 0 0 8531 8558 20054386 20054359 1.600000e-02 52.8
43 TraesCS3B01G244300 chr1B 85.974 549 51 5 5 553 550415422 550414900 1.630000e-156 564.0
44 TraesCS3B01G244300 chr1B 100.000 29 0 0 8530 8558 503812464 503812436 4.000000e-03 54.7
45 TraesCS3B01G244300 chr4B 85.740 554 53 5 1 553 498934644 498935172 5.860000e-156 562.0
46 TraesCS3B01G244300 chr4A 90.650 246 20 2 2578 2820 109786851 109787096 3.010000e-84 324.0
47 TraesCS3B01G244300 chr4A 88.940 217 20 4 579 794 17027253 17027466 1.850000e-66 265.0
48 TraesCS3B01G244300 chr4A 88.288 222 24 2 574 794 685299205 685299425 1.850000e-66 265.0
49 TraesCS3B01G244300 chr4A 94.828 116 6 0 1931 2046 649897876 649897991 1.920000e-41 182.0
50 TraesCS3B01G244300 chr4A 82.540 126 22 0 7366 7491 579436538 579436413 2.550000e-20 111.0
51 TraesCS3B01G244300 chr7A 88.710 248 25 1 2580 2824 127913960 127913713 5.070000e-77 300.0
52 TraesCS3B01G244300 chr7A 88.636 220 19 6 579 794 271157037 271157254 6.650000e-66 263.0
53 TraesCS3B01G244300 chr7A 94.958 119 5 1 1926 2043 645026174 645026056 1.480000e-42 185.0
54 TraesCS3B01G244300 chr2A 90.777 206 16 3 586 789 180208010 180208214 1.110000e-68 272.0
55 TraesCS3B01G244300 chr5D 90.000 210 19 2 586 794 297733300 297733508 3.980000e-68 270.0
56 TraesCS3B01G244300 chr5D 100.000 29 0 0 8530 8558 110618035 110618007 4.000000e-03 54.7
57 TraesCS3B01G244300 chr2B 88.789 223 21 4 578 797 677810507 677810286 3.980000e-68 270.0
58 TraesCS3B01G244300 chr2B 94.815 135 7 0 1 135 770178434 770178568 2.440000e-50 211.0
59 TraesCS3B01G244300 chr2B 100.000 28 0 0 7337 7364 133682439 133682412 1.600000e-02 52.8
60 TraesCS3B01G244300 chr6A 89.671 213 19 3 586 797 163099123 163098913 1.430000e-67 268.0
61 TraesCS3B01G244300 chr1D 88.940 217 21 3 579 794 227919515 227919729 1.850000e-66 265.0
62 TraesCS3B01G244300 chr1D 98.361 61 1 0 8559 8619 176205693 176205633 3.300000e-19 108.0
63 TraesCS3B01G244300 chr1D 98.361 61 1 0 8559 8619 254386641 254386701 3.300000e-19 108.0
64 TraesCS3B01G244300 chr1D 97.143 35 0 1 8524 8558 335031407 335031440 3.370000e-04 58.4
65 TraesCS3B01G244300 chr5A 88.000 225 24 3 572 794 675940187 675940410 6.650000e-66 263.0
66 TraesCS3B01G244300 chr5A 88.889 108 10 2 7458 7564 232834355 232834249 1.960000e-26 132.0
67 TraesCS3B01G244300 chr5A 100.000 32 0 0 8527 8558 101414211 101414180 9.370000e-05 60.2
68 TraesCS3B01G244300 chr5A 100.000 28 0 0 7541 7568 370099297 370099324 1.600000e-02 52.8
69 TraesCS3B01G244300 chr7D 95.614 114 5 0 1932 2045 555213443 555213330 5.330000e-42 183.0
70 TraesCS3B01G244300 chrUn 98.361 61 1 0 8559 8619 216510166 216510226 3.300000e-19 108.0
71 TraesCS3B01G244300 chrUn 98.361 61 1 0 8559 8619 397078352 397078412 3.300000e-19 108.0
72 TraesCS3B01G244300 chrUn 98.361 61 1 0 8559 8619 424751203 424751263 3.300000e-19 108.0
73 TraesCS3B01G244300 chrUn 98.361 61 1 0 8559 8619 455551844 455551784 3.300000e-19 108.0
74 TraesCS3B01G244300 chrUn 97.619 42 1 0 8559 8600 390488748 390488707 1.200000e-08 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G244300 chr3B 386375887 386384526 8639 True 7630 10065 100.0000 1 8640 2 chr3B.!!$R4 8639
1 TraesCS3B01G244300 chr3B 762890849 762891394 545 True 496 496 83.7130 5 553 1 chr3B.!!$R3 548
2 TraesCS3B01G244300 chr3D 292366473 292373759 7286 False 3930 5792 95.8120 796 8522 3 chr3D.!!$F2 7726
3 TraesCS3B01G244300 chr3A 385524592 385531940 7348 True 2379 4747 95.9952 796 8522 5 chr3A.!!$R3 7726
4 TraesCS3B01G244300 chr2D 102961654 102962180 526 False 636 636 88.2250 1 552 1 chr2D.!!$F1 551
5 TraesCS3B01G244300 chr4D 301537455 301537982 527 False 627 627 87.8840 1 553 1 chr4D.!!$F2 552
6 TraesCS3B01G244300 chr1A 589693370 589693900 530 True 627 627 87.7700 1 555 1 chr1A.!!$R1 554
7 TraesCS3B01G244300 chr6B 284655611 284656157 546 True 623 623 87.1840 1 553 1 chr6B.!!$R1 552
8 TraesCS3B01G244300 chr5B 531555598 531556121 523 True 592 592 86.9330 5 553 1 chr5B.!!$R4 548
9 TraesCS3B01G244300 chr5B 244151379 244151902 523 True 569 569 86.1820 5 553 1 chr5B.!!$R3 548
10 TraesCS3B01G244300 chr6D 13671618 13672143 525 True 568 568 86.0510 5 555 1 chr6D.!!$R1 550
11 TraesCS3B01G244300 chr7B 595289436 595289960 524 True 564 564 85.8950 1 553 1 chr7B.!!$R2 552
12 TraesCS3B01G244300 chr1B 550414900 550415422 522 True 564 564 85.9740 5 553 1 chr1B.!!$R2 548
13 TraesCS3B01G244300 chr4B 498934644 498935172 528 False 562 562 85.7400 1 553 1 chr4B.!!$F1 552

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
162 163 0.109086 TGCTCGAAGAAGCTCGAAGG 60.109 55.000 0.00 0.00 46.53 3.46 F
933 978 0.179081 CCCTTCGATTCGAACTCCCC 60.179 60.000 17.08 0.00 41.05 4.81 F
1292 1337 0.458669 GATTACGAGGGCGAAGTGGA 59.541 55.000 0.00 0.00 41.64 4.02 F
1293 1338 0.460311 ATTACGAGGGCGAAGTGGAG 59.540 55.000 0.00 0.00 41.64 3.86 F
1494 1551 0.546267 AGAAGAAGGAGCAGGAGCCA 60.546 55.000 0.00 0.00 43.56 4.75 F
2826 2919 0.112412 ACCAAACAGCCCCTTAGTGG 59.888 55.000 0.00 0.00 0.00 4.00 F
3399 3499 0.603569 ACAAGATCTCGCGAACTGGT 59.396 50.000 11.33 10.80 0.00 4.00 F
3539 3639 0.954452 CTCTGGTGCCTCAAACCAAC 59.046 55.000 0.00 0.00 46.85 3.77 F
3965 4065 1.280133 TGAGAATCCCAACTCAGCAGG 59.720 52.381 0.00 0.00 38.08 4.85 F
4986 5131 1.619332 GTTCTTCCACTCGGAGGACTT 59.381 52.381 10.23 0.00 46.46 3.01 F
5300 5445 1.347221 GGCGCACGTACTGTAATGC 59.653 57.895 10.83 12.88 34.66 3.56 F
6905 7052 1.974265 TTTGAATCAGCCACCGTCAA 58.026 45.000 0.00 0.00 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2022 2112 0.038744 ACTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30 R
2023 2113 0.038744 AACTACTCCCTCCGTTCGGA 59.961 55.000 13.34 13.34 0.00 4.55 R
2779 2872 0.335019 AGGTTAGCCCCACCAAATCC 59.665 55.000 0.00 0.00 36.67 3.01 R
2787 2880 1.431195 TTCAGCCAAGGTTAGCCCCA 61.431 55.000 0.00 0.00 34.57 4.96 R
3165 3265 1.543871 GGCCGGTTCTGGTTTTCACTA 60.544 52.381 1.90 0.00 0.00 2.74 R
3979 4079 0.037975 CACTTGGTGAAGCATTGCCC 60.038 55.000 4.70 0.00 35.23 5.36 R
4801 4904 0.744771 GCCTCGGGGAGAATGACAAC 60.745 60.000 4.80 0.00 33.58 3.32 R
5040 5185 1.007964 CTGGACAGAGATAGCCGCG 60.008 63.158 0.00 0.00 0.00 6.46 R
5300 5445 1.086067 CACATACCAGCAGCTCGTGG 61.086 60.000 2.41 9.04 39.98 4.94 R
6185 6331 1.746787 ACGCCATTTCGTTATTTCCCC 59.253 47.619 0.00 0.00 40.07 4.81 R
6972 7119 3.282885 GGAACAGGGGCAGAGAAAATAG 58.717 50.000 0.00 0.00 0.00 1.73 R
8148 8324 0.179179 GTGCATTTCTTCGCTGCTCC 60.179 55.000 0.00 0.00 36.84 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
135 136 4.371786 AGAAGCGCGATTGATAGAAATCA 58.628 39.130 17.15 0.00 40.43 2.57
145 146 5.808042 TTGATAGAAATCAACTGAGCTGC 57.192 39.130 0.00 0.00 45.17 5.25
146 147 5.095145 TGATAGAAATCAACTGAGCTGCT 57.905 39.130 0.00 0.00 39.20 4.24
147 148 5.114780 TGATAGAAATCAACTGAGCTGCTC 58.885 41.667 22.38 22.38 39.20 4.26
148 149 2.344950 AGAAATCAACTGAGCTGCTCG 58.655 47.619 23.35 19.36 32.35 5.03
149 150 2.028658 AGAAATCAACTGAGCTGCTCGA 60.029 45.455 23.35 15.02 32.35 4.04
150 151 2.462456 AATCAACTGAGCTGCTCGAA 57.538 45.000 23.35 7.31 32.35 3.71
151 152 2.007360 ATCAACTGAGCTGCTCGAAG 57.993 50.000 23.35 18.19 32.35 3.79
152 153 0.961753 TCAACTGAGCTGCTCGAAGA 59.038 50.000 23.35 15.47 32.35 2.87
153 154 1.341209 TCAACTGAGCTGCTCGAAGAA 59.659 47.619 23.35 5.85 34.09 2.52
154 155 1.725706 CAACTGAGCTGCTCGAAGAAG 59.274 52.381 23.35 16.85 34.09 2.85
155 156 0.389687 ACTGAGCTGCTCGAAGAAGC 60.390 55.000 23.35 6.72 40.41 3.86
157 158 4.908790 AGCTGCTCGAAGAAGCTC 57.091 55.556 10.54 0.00 46.50 4.09
158 159 1.153862 AGCTGCTCGAAGAAGCTCG 60.154 57.895 10.54 0.00 46.50 5.03
159 160 1.153939 GCTGCTCGAAGAAGCTCGA 60.154 57.895 7.40 0.00 45.22 4.04
160 161 0.734253 GCTGCTCGAAGAAGCTCGAA 60.734 55.000 7.40 0.00 46.53 3.71
161 162 1.267365 CTGCTCGAAGAAGCTCGAAG 58.733 55.000 0.00 0.00 46.53 3.79
162 163 0.109086 TGCTCGAAGAAGCTCGAAGG 60.109 55.000 0.00 0.00 46.53 3.46
163 164 0.804156 GCTCGAAGAAGCTCGAAGGG 60.804 60.000 0.00 0.00 46.53 3.95
247 267 8.850452 GTGAGAACCGAATTAATCAAAATCAAC 58.150 33.333 0.00 0.00 0.00 3.18
249 269 7.891561 AGAACCGAATTAATCAAAATCAACCA 58.108 30.769 0.00 0.00 0.00 3.67
253 273 6.701400 CCGAATTAATCAAAATCAACCATCCC 59.299 38.462 0.00 0.00 0.00 3.85
278 298 1.737838 TGACATAAGCTTGCCCTTCG 58.262 50.000 9.86 0.00 0.00 3.79
319 339 8.118976 TCTCAAATCAATCTTCAATGCTCTTT 57.881 30.769 0.00 0.00 0.00 2.52
349 391 4.252878 TGTTAGAAAGCTTGCGATGATGA 58.747 39.130 0.00 0.00 0.00 2.92
360 403 5.180117 GCTTGCGATGATGAATTGGTATACT 59.820 40.000 2.25 0.00 0.00 2.12
392 435 8.398878 TGTGAAGGGTAAAGATTTTAATTCGT 57.601 30.769 0.00 0.00 0.00 3.85
395 438 9.504708 TGAAGGGTAAAGATTTTAATTCGTACA 57.495 29.630 0.00 0.00 0.00 2.90
420 463 6.691388 ACGAACAATTCTTTGTAAGCTTGTTC 59.309 34.615 21.71 21.71 45.30 3.18
426 469 9.305925 CAATTCTTTGTAAGCTTGTTCTTCTTT 57.694 29.630 9.86 0.00 0.00 2.52
575 619 9.774742 AGATAAAACTTCATATTTCGAACAAGC 57.225 29.630 0.00 0.00 0.00 4.01
576 620 9.554724 GATAAAACTTCATATTTCGAACAAGCA 57.445 29.630 0.00 0.00 0.00 3.91
579 623 9.906660 AAAACTTCATATTTCGAACAAGCATAA 57.093 25.926 0.00 0.00 0.00 1.90
580 624 9.906660 AAACTTCATATTTCGAACAAGCATAAA 57.093 25.926 0.00 0.00 0.00 1.40
581 625 9.906660 AACTTCATATTTCGAACAAGCATAAAA 57.093 25.926 0.00 0.00 0.00 1.52
582 626 9.341899 ACTTCATATTTCGAACAAGCATAAAAC 57.658 29.630 0.00 0.00 0.00 2.43
583 627 9.559958 CTTCATATTTCGAACAAGCATAAAACT 57.440 29.630 0.00 0.00 0.00 2.66
588 632 8.950403 ATTTCGAACAAGCATAAAACTAACTC 57.050 30.769 0.00 0.00 0.00 3.01
589 633 6.476243 TCGAACAAGCATAAAACTAACTCC 57.524 37.500 0.00 0.00 0.00 3.85
590 634 5.410439 TCGAACAAGCATAAAACTAACTCCC 59.590 40.000 0.00 0.00 0.00 4.30
591 635 5.411669 CGAACAAGCATAAAACTAACTCCCT 59.588 40.000 0.00 0.00 0.00 4.20
592 636 6.402226 CGAACAAGCATAAAACTAACTCCCTC 60.402 42.308 0.00 0.00 0.00 4.30
593 637 5.254115 ACAAGCATAAAACTAACTCCCTCC 58.746 41.667 0.00 0.00 0.00 4.30
594 638 5.014228 ACAAGCATAAAACTAACTCCCTCCT 59.986 40.000 0.00 0.00 0.00 3.69
595 639 5.780958 AGCATAAAACTAACTCCCTCCTT 57.219 39.130 0.00 0.00 0.00 3.36
596 640 5.746284 AGCATAAAACTAACTCCCTCCTTC 58.254 41.667 0.00 0.00 0.00 3.46
597 641 5.489278 AGCATAAAACTAACTCCCTCCTTCT 59.511 40.000 0.00 0.00 0.00 2.85
598 642 6.672657 AGCATAAAACTAACTCCCTCCTTCTA 59.327 38.462 0.00 0.00 0.00 2.10
599 643 7.348537 AGCATAAAACTAACTCCCTCCTTCTAT 59.651 37.037 0.00 0.00 0.00 1.98
600 644 7.658167 GCATAAAACTAACTCCCTCCTTCTATC 59.342 40.741 0.00 0.00 0.00 2.08
601 645 8.929487 CATAAAACTAACTCCCTCCTTCTATCT 58.071 37.037 0.00 0.00 0.00 1.98
602 646 6.800072 AAACTAACTCCCTCCTTCTATCTG 57.200 41.667 0.00 0.00 0.00 2.90
603 647 5.475398 ACTAACTCCCTCCTTCTATCTGT 57.525 43.478 0.00 0.00 0.00 3.41
604 648 6.593759 ACTAACTCCCTCCTTCTATCTGTA 57.406 41.667 0.00 0.00 0.00 2.74
605 649 7.169287 ACTAACTCCCTCCTTCTATCTGTAT 57.831 40.000 0.00 0.00 0.00 2.29
606 650 8.290463 ACTAACTCCCTCCTTCTATCTGTATA 57.710 38.462 0.00 0.00 0.00 1.47
607 651 8.387813 ACTAACTCCCTCCTTCTATCTGTATAG 58.612 40.741 0.00 0.00 37.08 1.31
608 652 6.147437 ACTCCCTCCTTCTATCTGTATAGG 57.853 45.833 0.00 0.00 36.49 2.57
609 653 5.015817 ACTCCCTCCTTCTATCTGTATAGGG 59.984 48.000 0.00 0.00 43.23 3.53
610 654 5.538082 CCCTCCTTCTATCTGTATAGGGA 57.462 47.826 0.00 0.00 44.39 4.20
611 655 5.015391 TCCCTCCTTCTATCTGTATAGGGAC 59.985 48.000 0.00 0.00 45.07 4.46
612 656 5.015817 CCCTCCTTCTATCTGTATAGGGACT 59.984 48.000 0.00 0.00 44.39 3.85
613 657 7.927806 TCCCTCCTTCTATCTGTATAGGGACTA 60.928 44.444 0.00 0.00 45.07 2.59
627 671 4.563140 AGGGACTAATGCGTTTTTAGGA 57.437 40.909 0.00 0.00 36.02 2.94
628 672 4.259356 AGGGACTAATGCGTTTTTAGGAC 58.741 43.478 0.00 0.00 36.02 3.85
629 673 3.376234 GGGACTAATGCGTTTTTAGGACC 59.624 47.826 0.00 0.00 32.15 4.46
630 674 3.063045 GGACTAATGCGTTTTTAGGACCG 59.937 47.826 0.00 0.00 32.15 4.79
631 675 2.417586 ACTAATGCGTTTTTAGGACCGC 59.582 45.455 0.00 0.00 45.92 5.68
632 676 0.524414 AATGCGTTTTTAGGACCGCC 59.476 50.000 0.00 0.00 45.18 6.13
634 678 0.535553 TGCGTTTTTAGGACCGCCTT 60.536 50.000 0.00 0.00 43.90 4.35
635 679 0.594602 GCGTTTTTAGGACCGCCTTT 59.405 50.000 0.00 0.00 43.90 3.11
636 680 1.664874 GCGTTTTTAGGACCGCCTTTG 60.665 52.381 0.00 0.00 43.90 2.77
637 681 1.874872 CGTTTTTAGGACCGCCTTTGA 59.125 47.619 0.00 0.00 43.90 2.69
638 682 2.350102 CGTTTTTAGGACCGCCTTTGAC 60.350 50.000 0.00 0.00 43.90 3.18
639 683 2.882761 GTTTTTAGGACCGCCTTTGACT 59.117 45.455 0.00 0.00 43.90 3.41
640 684 4.067192 GTTTTTAGGACCGCCTTTGACTA 58.933 43.478 0.00 0.00 43.90 2.59
641 685 4.563140 TTTTAGGACCGCCTTTGACTAT 57.437 40.909 0.00 0.00 43.90 2.12
642 686 4.563140 TTTAGGACCGCCTTTGACTATT 57.437 40.909 0.00 0.00 43.90 1.73
643 687 2.403252 AGGACCGCCTTTGACTATTG 57.597 50.000 0.00 0.00 43.90 1.90
644 688 1.906574 AGGACCGCCTTTGACTATTGA 59.093 47.619 0.00 0.00 43.90 2.57
645 689 2.007608 GGACCGCCTTTGACTATTGAC 58.992 52.381 0.00 0.00 0.00 3.18
646 690 2.614481 GGACCGCCTTTGACTATTGACA 60.614 50.000 0.00 0.00 0.00 3.58
647 691 3.071479 GACCGCCTTTGACTATTGACAA 58.929 45.455 0.00 0.00 0.00 3.18
648 692 3.074412 ACCGCCTTTGACTATTGACAAG 58.926 45.455 0.00 0.00 0.00 3.16
649 693 3.244422 ACCGCCTTTGACTATTGACAAGA 60.244 43.478 0.00 0.00 0.00 3.02
650 694 3.941483 CCGCCTTTGACTATTGACAAGAT 59.059 43.478 0.00 0.00 0.00 2.40
651 695 4.396166 CCGCCTTTGACTATTGACAAGATT 59.604 41.667 0.00 0.00 0.00 2.40
652 696 5.584649 CCGCCTTTGACTATTGACAAGATTA 59.415 40.000 0.00 0.00 0.00 1.75
653 697 6.093495 CCGCCTTTGACTATTGACAAGATTAA 59.907 38.462 0.00 0.00 0.00 1.40
654 698 7.201732 CCGCCTTTGACTATTGACAAGATTAAT 60.202 37.037 0.00 0.00 0.00 1.40
655 699 8.826710 CGCCTTTGACTATTGACAAGATTAATA 58.173 33.333 0.00 0.00 0.00 0.98
710 754 8.227119 TGTCATTGTAAGTTCATTTCACATACG 58.773 33.333 0.00 0.00 0.00 3.06
711 755 8.440059 GTCATTGTAAGTTCATTTCACATACGA 58.560 33.333 0.00 0.00 0.00 3.43
712 756 8.994170 TCATTGTAAGTTCATTTCACATACGAA 58.006 29.630 0.00 0.00 0.00 3.85
713 757 9.773328 CATTGTAAGTTCATTTCACATACGAAT 57.227 29.630 0.00 0.00 0.00 3.34
740 784 9.920133 TTAATGATATGCTTTGTTTAAGTTGCA 57.080 25.926 0.00 0.00 36.19 4.08
742 786 7.815398 TGATATGCTTTGTTTAAGTTGCATG 57.185 32.000 8.29 0.00 40.65 4.06
743 787 7.377398 TGATATGCTTTGTTTAAGTTGCATGT 58.623 30.769 8.29 2.03 40.65 3.21
744 788 7.541783 TGATATGCTTTGTTTAAGTTGCATGTC 59.458 33.333 13.01 13.01 43.91 3.06
745 789 5.003692 TGCTTTGTTTAAGTTGCATGTCA 57.996 34.783 0.00 0.00 36.19 3.58
746 790 5.599732 TGCTTTGTTTAAGTTGCATGTCAT 58.400 33.333 0.00 0.00 36.19 3.06
747 791 6.743110 TGCTTTGTTTAAGTTGCATGTCATA 58.257 32.000 0.00 0.00 36.19 2.15
748 792 7.377398 TGCTTTGTTTAAGTTGCATGTCATAT 58.623 30.769 0.00 0.00 36.19 1.78
749 793 8.518702 TGCTTTGTTTAAGTTGCATGTCATATA 58.481 29.630 0.00 0.00 36.19 0.86
750 794 9.520204 GCTTTGTTTAAGTTGCATGTCATATAT 57.480 29.630 0.00 0.00 36.19 0.86
759 803 8.859236 AGTTGCATGTCATATATTATTGCTCT 57.141 30.769 0.00 0.00 0.00 4.09
760 804 9.948964 AGTTGCATGTCATATATTATTGCTCTA 57.051 29.630 0.00 0.00 0.00 2.43
761 805 9.979270 GTTGCATGTCATATATTATTGCTCTAC 57.021 33.333 0.00 0.00 0.00 2.59
762 806 8.722480 TGCATGTCATATATTATTGCTCTACC 57.278 34.615 0.00 0.00 0.00 3.18
763 807 8.320617 TGCATGTCATATATTATTGCTCTACCA 58.679 33.333 0.00 0.00 0.00 3.25
764 808 9.334947 GCATGTCATATATTATTGCTCTACCAT 57.665 33.333 0.00 0.00 0.00 3.55
786 830 8.485976 CCATTTGGTGAAAGTTAAACTTGAAA 57.514 30.769 0.00 0.00 38.66 2.69
787 831 8.940952 CCATTTGGTGAAAGTTAAACTTGAAAA 58.059 29.630 0.00 0.00 38.66 2.29
855 899 0.969917 TCCCGTCCGTTCCCGAAATA 60.970 55.000 0.00 0.00 35.63 1.40
933 978 0.179081 CCCTTCGATTCGAACTCCCC 60.179 60.000 17.08 0.00 41.05 4.81
1292 1337 0.458669 GATTACGAGGGCGAAGTGGA 59.541 55.000 0.00 0.00 41.64 4.02
1293 1338 0.460311 ATTACGAGGGCGAAGTGGAG 59.540 55.000 0.00 0.00 41.64 3.86
1294 1339 1.601419 TTACGAGGGCGAAGTGGAGG 61.601 60.000 0.00 0.00 41.64 4.30
1295 1340 2.488771 TACGAGGGCGAAGTGGAGGA 62.489 60.000 0.00 0.00 41.64 3.71
1296 1341 2.896443 GAGGGCGAAGTGGAGGAG 59.104 66.667 0.00 0.00 0.00 3.69
1297 1342 2.685380 AGGGCGAAGTGGAGGAGG 60.685 66.667 0.00 0.00 0.00 4.30
1341 1386 8.908786 AATACTACGATGATTTGTTGGATGAT 57.091 30.769 0.00 0.00 0.00 2.45
1386 1431 1.050988 AGGAGTATGATGGCCACGCT 61.051 55.000 8.16 1.14 0.00 5.07
1452 1497 4.101077 CCTGGGGAGGAGGGAGCT 62.101 72.222 0.00 0.00 0.00 4.09
1470 1527 4.828925 GAGGCTGAGGCTGACGGC 62.829 72.222 15.18 0.00 38.98 5.68
1494 1551 0.546267 AGAAGAAGGAGCAGGAGCCA 60.546 55.000 0.00 0.00 43.56 4.75
1533 1590 0.907171 GCGCGTTTTACATGCATGAC 59.093 50.000 32.75 18.59 37.23 3.06
1632 1689 5.592282 TCATAGTTTCTGGACAACTTGCAAA 59.408 36.000 0.00 0.00 35.95 3.68
1652 1709 7.319646 TGCAAATTATTCGAGGCAAACTAAAT 58.680 30.769 0.00 0.00 0.00 1.40
1708 1765 1.077716 GCAGGGCTGGGTTCGTATT 60.078 57.895 0.00 0.00 0.00 1.89
1769 1859 3.632604 TGAACTAGGAAGCTCCAGTATCG 59.367 47.826 0.00 0.00 39.61 2.92
1886 1976 7.497595 TGCTGTTATGGTAGTAAAGACTATGG 58.502 38.462 0.00 0.00 40.32 2.74
1933 2023 8.676397 AGTCCCAACCTTTACTAATTACTACT 57.324 34.615 0.00 0.00 0.00 2.57
1934 2024 9.774071 AGTCCCAACCTTTACTAATTACTACTA 57.226 33.333 0.00 0.00 0.00 1.82
1935 2025 9.809096 GTCCCAACCTTTACTAATTACTACTAC 57.191 37.037 0.00 0.00 0.00 2.73
1936 2026 9.774071 TCCCAACCTTTACTAATTACTACTACT 57.226 33.333 0.00 0.00 0.00 2.57
1941 2031 9.639563 ACCTTTACTAATTACTACTACTCCCTC 57.360 37.037 0.00 0.00 0.00 4.30
1942 2032 9.076781 CCTTTACTAATTACTACTACTCCCTCC 57.923 40.741 0.00 0.00 0.00 4.30
1943 2033 8.682936 TTTACTAATTACTACTACTCCCTCCG 57.317 38.462 0.00 0.00 0.00 4.63
1944 2034 6.259346 ACTAATTACTACTACTCCCTCCGT 57.741 41.667 0.00 0.00 0.00 4.69
1945 2035 6.667661 ACTAATTACTACTACTCCCTCCGTT 58.332 40.000 0.00 0.00 0.00 4.44
1946 2036 7.122048 ACTAATTACTACTACTCCCTCCGTTT 58.878 38.462 0.00 0.00 0.00 3.60
1947 2037 5.848833 ATTACTACTACTCCCTCCGTTTG 57.151 43.478 0.00 0.00 0.00 2.93
1948 2038 2.454538 ACTACTACTCCCTCCGTTTGG 58.545 52.381 0.00 0.00 0.00 3.28
1949 2039 2.042162 ACTACTACTCCCTCCGTTTGGA 59.958 50.000 0.00 0.00 43.88 3.53
1950 2040 2.019807 ACTACTCCCTCCGTTTGGAA 57.980 50.000 0.00 0.00 45.87 3.53
1951 2041 2.547990 ACTACTCCCTCCGTTTGGAAT 58.452 47.619 0.00 0.00 45.87 3.01
1952 2042 2.910977 ACTACTCCCTCCGTTTGGAATT 59.089 45.455 0.00 0.00 45.87 2.17
1953 2043 4.098894 ACTACTCCCTCCGTTTGGAATTA 58.901 43.478 0.00 0.00 45.87 1.40
1954 2044 3.345508 ACTCCCTCCGTTTGGAATTAC 57.654 47.619 0.00 0.00 45.87 1.89
1955 2045 2.640826 ACTCCCTCCGTTTGGAATTACA 59.359 45.455 0.00 0.00 45.87 2.41
1956 2046 3.265995 ACTCCCTCCGTTTGGAATTACAT 59.734 43.478 0.00 0.00 45.87 2.29
1957 2047 3.616219 TCCCTCCGTTTGGAATTACATG 58.384 45.455 0.00 0.00 45.87 3.21
1958 2048 3.009695 TCCCTCCGTTTGGAATTACATGT 59.990 43.478 2.69 2.69 45.87 3.21
1959 2049 3.377172 CCCTCCGTTTGGAATTACATGTC 59.623 47.826 0.00 0.00 45.87 3.06
1960 2050 4.261801 CCTCCGTTTGGAATTACATGTCT 58.738 43.478 0.00 0.00 45.87 3.41
1961 2051 4.332819 CCTCCGTTTGGAATTACATGTCTC 59.667 45.833 0.00 0.00 45.87 3.36
1962 2052 3.930229 TCCGTTTGGAATTACATGTCTCG 59.070 43.478 0.00 0.00 42.85 4.04
1963 2053 3.930229 CCGTTTGGAATTACATGTCTCGA 59.070 43.478 0.00 0.00 37.49 4.04
1964 2054 4.390603 CCGTTTGGAATTACATGTCTCGAA 59.609 41.667 0.00 0.00 37.49 3.71
1965 2055 5.106869 CCGTTTGGAATTACATGTCTCGAAA 60.107 40.000 0.00 5.21 37.49 3.46
1966 2056 6.367421 CGTTTGGAATTACATGTCTCGAAAA 58.633 36.000 0.00 0.57 0.00 2.29
1967 2057 7.021196 CGTTTGGAATTACATGTCTCGAAAAT 58.979 34.615 0.00 0.00 0.00 1.82
1968 2058 7.007367 CGTTTGGAATTACATGTCTCGAAAATG 59.993 37.037 0.00 4.82 0.00 2.32
1969 2059 6.435430 TGGAATTACATGTCTCGAAAATGG 57.565 37.500 0.00 0.00 0.00 3.16
1970 2060 6.176896 TGGAATTACATGTCTCGAAAATGGA 58.823 36.000 0.00 0.00 0.00 3.41
1971 2061 6.828273 TGGAATTACATGTCTCGAAAATGGAT 59.172 34.615 0.00 0.00 0.00 3.41
1972 2062 7.134815 GGAATTACATGTCTCGAAAATGGATG 58.865 38.462 0.00 0.00 0.00 3.51
1973 2063 7.201732 GGAATTACATGTCTCGAAAATGGATGT 60.202 37.037 0.00 0.00 0.00 3.06
1974 2064 8.731275 AATTACATGTCTCGAAAATGGATGTA 57.269 30.769 0.00 0.00 0.00 2.29
1975 2065 8.908786 ATTACATGTCTCGAAAATGGATGTAT 57.091 30.769 0.00 0.00 0.00 2.29
1976 2066 6.851222 ACATGTCTCGAAAATGGATGTATC 57.149 37.500 0.00 0.00 0.00 2.24
1977 2067 6.586344 ACATGTCTCGAAAATGGATGTATCT 58.414 36.000 0.00 0.00 0.00 1.98
1978 2068 7.726216 ACATGTCTCGAAAATGGATGTATCTA 58.274 34.615 0.00 0.00 0.00 1.98
1979 2069 7.869937 ACATGTCTCGAAAATGGATGTATCTAG 59.130 37.037 0.00 0.00 0.00 2.43
1980 2070 7.582667 TGTCTCGAAAATGGATGTATCTAGA 57.417 36.000 0.00 0.00 0.00 2.43
1981 2071 8.007405 TGTCTCGAAAATGGATGTATCTAGAA 57.993 34.615 0.00 0.00 0.00 2.10
1982 2072 7.921214 TGTCTCGAAAATGGATGTATCTAGAAC 59.079 37.037 0.00 0.00 0.00 3.01
1983 2073 8.138712 GTCTCGAAAATGGATGTATCTAGAACT 58.861 37.037 0.00 0.00 0.00 3.01
1984 2074 9.350951 TCTCGAAAATGGATGTATCTAGAACTA 57.649 33.333 0.00 0.00 0.00 2.24
1985 2075 9.967346 CTCGAAAATGGATGTATCTAGAACTAA 57.033 33.333 0.00 0.00 0.00 2.24
2013 2103 6.851222 AGTCTAGATACATCCATTTTTGCG 57.149 37.500 0.00 0.00 0.00 4.85
2014 2104 6.582636 AGTCTAGATACATCCATTTTTGCGA 58.417 36.000 0.00 0.00 0.00 5.10
2015 2105 6.480320 AGTCTAGATACATCCATTTTTGCGAC 59.520 38.462 0.00 0.00 0.00 5.19
2016 2106 6.257849 GTCTAGATACATCCATTTTTGCGACA 59.742 38.462 0.00 0.00 0.00 4.35
2017 2107 5.895636 AGATACATCCATTTTTGCGACAA 57.104 34.783 0.00 0.00 0.00 3.18
2018 2108 5.883661 AGATACATCCATTTTTGCGACAAG 58.116 37.500 0.00 0.00 0.00 3.16
2019 2109 5.415701 AGATACATCCATTTTTGCGACAAGT 59.584 36.000 0.00 0.00 0.00 3.16
2020 2110 6.597672 AGATACATCCATTTTTGCGACAAGTA 59.402 34.615 0.00 0.00 0.00 2.24
2021 2111 5.446143 ACATCCATTTTTGCGACAAGTAA 57.554 34.783 0.00 0.00 0.00 2.24
2022 2112 6.024552 ACATCCATTTTTGCGACAAGTAAT 57.975 33.333 0.00 0.00 0.00 1.89
2023 2113 6.454795 ACATCCATTTTTGCGACAAGTAATT 58.545 32.000 0.00 0.00 0.00 1.40
2024 2114 6.586082 ACATCCATTTTTGCGACAAGTAATTC 59.414 34.615 0.00 0.00 0.00 2.17
2025 2115 5.465935 TCCATTTTTGCGACAAGTAATTCC 58.534 37.500 0.00 0.00 0.00 3.01
2026 2116 4.323336 CCATTTTTGCGACAAGTAATTCCG 59.677 41.667 0.00 0.00 0.00 4.30
2027 2117 4.815040 TTTTTGCGACAAGTAATTCCGA 57.185 36.364 0.00 0.00 0.00 4.55
2028 2118 4.815040 TTTTGCGACAAGTAATTCCGAA 57.185 36.364 0.00 0.00 0.00 4.30
2029 2119 3.799137 TTGCGACAAGTAATTCCGAAC 57.201 42.857 0.00 0.00 0.00 3.95
2030 2120 1.722464 TGCGACAAGTAATTCCGAACG 59.278 47.619 0.00 0.00 0.00 3.95
2031 2121 1.060122 GCGACAAGTAATTCCGAACGG 59.940 52.381 6.94 6.94 0.00 4.44
2032 2122 2.598589 CGACAAGTAATTCCGAACGGA 58.401 47.619 12.04 12.04 43.52 4.69
2033 2123 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
2034 2124 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
2035 2125 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
2036 2126 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
2037 2127 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
2038 2128 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
2039 2129 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
2174 2264 4.042809 TCCAGTACAATCATGTTTGGAGGT 59.957 41.667 18.35 2.84 42.43 3.85
2246 2336 3.010138 ACAGGGTTAGGCACATACATGTT 59.990 43.478 2.30 0.00 39.39 2.71
2270 2360 5.481473 TCCAGCTCTTTCTGCCAAAATTATT 59.519 36.000 0.00 0.00 32.87 1.40
2383 2473 1.150567 TGTTGTGTTGCATTTGCGGC 61.151 50.000 0.00 0.00 45.83 6.53
2581 2671 4.022416 TGTTGGCTGTAATTGTTGCTTAGG 60.022 41.667 0.00 0.00 0.00 2.69
2799 2892 1.273041 GGATTTGGTGGGGCTAACCTT 60.273 52.381 9.91 0.00 38.60 3.50
2825 2918 1.995376 AACCAAACAGCCCCTTAGTG 58.005 50.000 0.00 0.00 0.00 2.74
2826 2919 0.112412 ACCAAACAGCCCCTTAGTGG 59.888 55.000 0.00 0.00 0.00 4.00
3165 3265 5.220662 CGAAGATAGCGACAACCAAAATCAT 60.221 40.000 0.00 0.00 0.00 2.45
3316 3416 8.498575 TGGGACAATTGGATTCATGTAATACTA 58.501 33.333 10.83 0.00 31.92 1.82
3396 3496 1.000955 ACCAACAAGATCTCGCGAACT 59.999 47.619 11.33 7.30 0.00 3.01
3399 3499 0.603569 ACAAGATCTCGCGAACTGGT 59.396 50.000 11.33 10.80 0.00 4.00
3539 3639 0.954452 CTCTGGTGCCTCAAACCAAC 59.046 55.000 0.00 0.00 46.85 3.77
3676 3776 1.518572 CACGGACTATGGTGGACGC 60.519 63.158 0.00 0.00 0.00 5.19
3769 3869 4.712829 TCAGGGTTTGCATCATCATCAATT 59.287 37.500 0.00 0.00 0.00 2.32
3868 3968 4.586001 ACACCATCATTTCAGCAAACTTCT 59.414 37.500 0.00 0.00 0.00 2.85
3871 3971 6.149973 CACCATCATTTCAGCAAACTTCTAGA 59.850 38.462 0.00 0.00 0.00 2.43
3965 4065 1.280133 TGAGAATCCCAACTCAGCAGG 59.720 52.381 0.00 0.00 38.08 4.85
3979 4079 2.202797 CAGGTGAGCCATCGGACG 60.203 66.667 0.00 0.00 37.19 4.79
4186 4286 2.416747 GAGCAAAATTTTCCTGGCACC 58.583 47.619 6.43 2.25 0.00 5.01
4245 4345 4.552166 ACGTTCTTGTTTTCTGGTGATG 57.448 40.909 0.00 0.00 0.00 3.07
4423 4523 6.392354 CCATCTCAGCTCTATTTTGCAAAAA 58.608 36.000 27.10 15.47 0.00 1.94
4526 4626 3.637273 GGGAGTCGGCAGGGTTGT 61.637 66.667 0.00 0.00 0.00 3.32
4702 4804 2.501316 CAAAACCCCATTCCTTCCATCC 59.499 50.000 0.00 0.00 0.00 3.51
4733 4836 4.307908 GGCGCACACAACCGACAC 62.308 66.667 10.83 0.00 31.50 3.67
4801 4904 2.232298 GAAGCCCCTGTGAGTCCTCG 62.232 65.000 0.00 0.00 0.00 4.63
4986 5131 1.619332 GTTCTTCCACTCGGAGGACTT 59.381 52.381 10.23 0.00 46.46 3.01
5300 5445 1.347221 GGCGCACGTACTGTAATGC 59.653 57.895 10.83 12.88 34.66 3.56
5383 5528 3.626983 CCATGTGGGTGGAATCATACCAA 60.627 47.826 7.94 0.00 42.02 3.67
6062 6208 7.554959 TTTCTTCTAATCTAGTCACTTGGGT 57.445 36.000 0.00 0.00 0.00 4.51
6342 6488 4.574674 AGACAGTAAATGGATCAAGCCA 57.425 40.909 0.00 0.00 43.23 4.75
6367 6513 9.749490 CAAAACATAATTTGCACTGAATCATTC 57.251 29.630 0.00 0.00 33.90 2.67
6458 6604 7.095607 CGTAAACTATGACTTCAAGAGTTGCTT 60.096 37.037 9.49 0.00 39.19 3.91
6731 6878 9.030452 ACACTTTTAAATGATGGCAATAGGTTA 57.970 29.630 8.00 0.00 0.00 2.85
6905 7052 1.974265 TTTGAATCAGCCACCGTCAA 58.026 45.000 0.00 0.00 0.00 3.18
6937 7084 7.278868 GCTGATATTACTTCTTGTTAGCTGTGT 59.721 37.037 0.00 0.00 0.00 3.72
6972 7119 2.683362 GCTTTACTTGGGGTGCTCATAC 59.317 50.000 0.00 0.00 0.00 2.39
6994 7141 0.250727 TTTTCTCTGCCCCTGTTCCG 60.251 55.000 0.00 0.00 0.00 4.30
7134 7281 1.074566 CATGGGGCTAAATCTCCTCCC 59.925 57.143 0.00 0.00 36.25 4.30
7166 7313 3.248024 AGTTGTGAGATCCCCTGTTACA 58.752 45.455 0.00 0.00 0.00 2.41
7169 7316 1.134788 GTGAGATCCCCTGTTACACCG 60.135 57.143 0.00 0.00 0.00 4.94
7304 7451 9.438228 GCATAGGAGGTAAGATATTTTTACTCC 57.562 37.037 15.33 15.33 33.40 3.85
7351 7498 6.432107 ACTACGCACGTTTCAAAATAATTGT 58.568 32.000 0.00 0.00 0.00 2.71
7607 7782 7.982354 GTGAGCTTATTTATGTCCTCTTGTACT 59.018 37.037 0.00 0.00 0.00 2.73
7680 7855 9.128404 TGAATTTCATCTGAATAAGCTGCTTAT 57.872 29.630 25.19 25.19 38.17 1.73
7695 7870 2.154462 GCTTATGGTCAGTTGCACACT 58.846 47.619 0.00 0.00 35.35 3.55
7729 7905 5.737860 TGATATTTCTTCTCTGCTCTGCAA 58.262 37.500 0.00 0.00 38.41 4.08
7751 7927 1.465777 CTCATTGTGACATGCGCTCAA 59.534 47.619 9.73 5.17 0.00 3.02
7805 7981 5.543020 TGATCTCTGGTTATGATCTGAGCAT 59.457 40.000 13.44 13.44 37.89 3.79
7866 8042 4.057406 TCTGTTCTGGCATTTTTGGTTG 57.943 40.909 0.00 0.00 0.00 3.77
7942 8118 2.158519 TGTTCCCCCTTTTCTCTGGTTC 60.159 50.000 0.00 0.00 0.00 3.62
7999 8175 6.520021 TCTCCCAATCATGTAAATCCTGAT 57.480 37.500 0.00 0.00 33.89 2.90
8148 8324 4.097892 AGTTGTGGTAAGCCTGTTTTTCAG 59.902 41.667 0.00 0.00 43.27 3.02
8156 8332 3.761481 CTGTTTTTCAGGAGCAGCG 57.239 52.632 0.00 0.00 40.23 5.18
8157 8333 1.229428 CTGTTTTTCAGGAGCAGCGA 58.771 50.000 0.00 0.00 40.23 4.93
8236 8415 1.335872 GGTGTTGCTTGGTCGAAATGG 60.336 52.381 0.00 0.00 0.00 3.16
8327 8506 8.587608 TGTTGATTGATAAAGAAAGGCAAGAAT 58.412 29.630 0.00 0.00 0.00 2.40
8370 8549 3.119919 AGTGACTCGAGTTTATGTCGGTC 60.120 47.826 21.08 3.27 38.02 4.79
8375 8554 3.079578 TCGAGTTTATGTCGGTCTGAGT 58.920 45.455 0.00 0.00 38.02 3.41
8390 8569 5.506483 CGGTCTGAGTTCTGATGTACCTATG 60.506 48.000 0.00 0.00 0.00 2.23
8514 8695 1.442526 GCCTGATGAGTGCCCAATCG 61.443 60.000 0.00 0.00 0.00 3.34
8522 8703 1.812571 GAGTGCCCAATCGATTGTGTT 59.187 47.619 30.71 15.02 36.06 3.32
8523 8704 1.812571 AGTGCCCAATCGATTGTGTTC 59.187 47.619 30.71 19.70 36.06 3.18
8524 8705 1.539388 GTGCCCAATCGATTGTGTTCA 59.461 47.619 30.71 20.52 36.06 3.18
8525 8706 2.030363 GTGCCCAATCGATTGTGTTCAA 60.030 45.455 30.71 11.80 36.06 2.69
8526 8707 2.824936 TGCCCAATCGATTGTGTTCAAT 59.175 40.909 30.71 0.00 45.57 2.57
8527 8708 3.257873 TGCCCAATCGATTGTGTTCAATT 59.742 39.130 30.71 0.00 43.33 2.32
8528 8709 3.613737 GCCCAATCGATTGTGTTCAATTG 59.386 43.478 30.71 15.37 43.33 2.32
8529 8710 4.808558 CCCAATCGATTGTGTTCAATTGT 58.191 39.130 30.71 0.00 43.33 2.71
8530 8711 4.622313 CCCAATCGATTGTGTTCAATTGTG 59.378 41.667 30.71 14.32 43.33 3.33
8531 8712 5.221880 CCAATCGATTGTGTTCAATTGTGT 58.778 37.500 30.71 0.00 43.33 3.72
8532 8713 5.117440 CCAATCGATTGTGTTCAATTGTGTG 59.883 40.000 30.71 11.08 43.33 3.82
8533 8714 3.626977 TCGATTGTGTTCAATTGTGTGC 58.373 40.909 5.13 0.00 43.33 4.57
8534 8715 3.314913 TCGATTGTGTTCAATTGTGTGCT 59.685 39.130 5.13 0.00 43.33 4.40
8535 8716 4.513318 TCGATTGTGTTCAATTGTGTGCTA 59.487 37.500 5.13 0.00 43.33 3.49
8536 8717 4.612614 CGATTGTGTTCAATTGTGTGCTAC 59.387 41.667 5.13 0.00 43.33 3.58
8537 8718 5.560760 CGATTGTGTTCAATTGTGTGCTACT 60.561 40.000 5.13 0.00 43.33 2.57
8538 8719 4.811555 TGTGTTCAATTGTGTGCTACTC 57.188 40.909 5.13 0.00 0.00 2.59
8539 8720 3.563808 TGTGTTCAATTGTGTGCTACTCC 59.436 43.478 5.13 0.00 0.00 3.85
8540 8721 3.058224 GTGTTCAATTGTGTGCTACTCCC 60.058 47.826 5.13 0.00 0.00 4.30
8541 8722 3.181445 TGTTCAATTGTGTGCTACTCCCT 60.181 43.478 5.13 0.00 0.00 4.20
8542 8723 3.334583 TCAATTGTGTGCTACTCCCTC 57.665 47.619 5.13 0.00 0.00 4.30
8543 8724 2.027192 TCAATTGTGTGCTACTCCCTCC 60.027 50.000 5.13 0.00 0.00 4.30
8544 8725 0.537188 ATTGTGTGCTACTCCCTCCG 59.463 55.000 0.00 0.00 0.00 4.63
8545 8726 0.830444 TTGTGTGCTACTCCCTCCGT 60.830 55.000 0.00 0.00 0.00 4.69
8546 8727 1.248785 TGTGTGCTACTCCCTCCGTC 61.249 60.000 0.00 0.00 0.00 4.79
8547 8728 1.681327 TGTGCTACTCCCTCCGTCC 60.681 63.158 0.00 0.00 0.00 4.79
8548 8729 2.439701 TGCTACTCCCTCCGTCCG 60.440 66.667 0.00 0.00 0.00 4.79
8549 8730 2.124403 GCTACTCCCTCCGTCCGA 60.124 66.667 0.00 0.00 0.00 4.55
8550 8731 1.751927 GCTACTCCCTCCGTCCGAA 60.752 63.158 0.00 0.00 0.00 4.30
8551 8732 1.318158 GCTACTCCCTCCGTCCGAAA 61.318 60.000 0.00 0.00 0.00 3.46
8552 8733 1.180029 CTACTCCCTCCGTCCGAAAA 58.820 55.000 0.00 0.00 0.00 2.29
8553 8734 1.755380 CTACTCCCTCCGTCCGAAAAT 59.245 52.381 0.00 0.00 0.00 1.82
8554 8735 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
8555 8736 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
8556 8737 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
8557 8738 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
8558 8739 2.167075 TCCCTCCGTCCGAAAATACTTC 59.833 50.000 0.00 0.00 0.00 3.01
8559 8740 2.547826 CCTCCGTCCGAAAATACTTCC 58.452 52.381 0.00 0.00 0.00 3.46
8560 8741 2.093869 CCTCCGTCCGAAAATACTTCCA 60.094 50.000 0.00 0.00 0.00 3.53
8561 8742 3.187700 CTCCGTCCGAAAATACTTCCAG 58.812 50.000 0.00 0.00 0.00 3.86
8562 8743 2.827322 TCCGTCCGAAAATACTTCCAGA 59.173 45.455 0.00 0.00 0.00 3.86
8563 8744 3.449737 TCCGTCCGAAAATACTTCCAGAT 59.550 43.478 0.00 0.00 0.00 2.90
8564 8745 4.081309 TCCGTCCGAAAATACTTCCAGATT 60.081 41.667 0.00 0.00 0.00 2.40
8565 8746 4.270325 CCGTCCGAAAATACTTCCAGATTC 59.730 45.833 0.00 0.00 0.00 2.52
8566 8747 4.270325 CGTCCGAAAATACTTCCAGATTCC 59.730 45.833 0.00 0.00 0.00 3.01
8567 8748 5.183228 GTCCGAAAATACTTCCAGATTCCA 58.817 41.667 0.00 0.00 0.00 3.53
8568 8749 5.646360 GTCCGAAAATACTTCCAGATTCCAA 59.354 40.000 0.00 0.00 0.00 3.53
8569 8750 6.150474 GTCCGAAAATACTTCCAGATTCCAAA 59.850 38.462 0.00 0.00 0.00 3.28
8570 8751 6.889722 TCCGAAAATACTTCCAGATTCCAAAT 59.110 34.615 0.00 0.00 0.00 2.32
8571 8752 6.974622 CCGAAAATACTTCCAGATTCCAAATG 59.025 38.462 0.00 0.00 0.00 2.32
8572 8753 7.148086 CCGAAAATACTTCCAGATTCCAAATGA 60.148 37.037 0.00 0.00 0.00 2.57
8573 8754 8.243426 CGAAAATACTTCCAGATTCCAAATGAA 58.757 33.333 0.00 0.00 37.38 2.57
8574 8755 9.578439 GAAAATACTTCCAGATTCCAAATGAAG 57.422 33.333 0.00 0.00 36.14 3.02
8575 8756 8.884124 AAATACTTCCAGATTCCAAATGAAGA 57.116 30.769 0.00 0.00 36.14 2.87
8576 8757 8.884124 AATACTTCCAGATTCCAAATGAAGAA 57.116 30.769 0.00 0.00 36.14 2.52
8577 8758 8.884124 ATACTTCCAGATTCCAAATGAAGAAA 57.116 30.769 0.00 0.00 36.14 2.52
8578 8759 7.787623 ACTTCCAGATTCCAAATGAAGAAAT 57.212 32.000 0.00 0.00 36.14 2.17
8579 8760 7.609056 ACTTCCAGATTCCAAATGAAGAAATG 58.391 34.615 0.00 0.00 36.14 2.32
8580 8761 6.534475 TCCAGATTCCAAATGAAGAAATGG 57.466 37.500 0.00 0.00 36.14 3.16
8581 8762 6.255287 TCCAGATTCCAAATGAAGAAATGGA 58.745 36.000 0.00 0.00 38.55 3.41
8587 8768 6.012658 TCCAAATGAAGAAATGGAAACTCG 57.987 37.500 0.00 0.00 38.95 4.18
8588 8769 5.767665 TCCAAATGAAGAAATGGAAACTCGA 59.232 36.000 0.00 0.00 38.95 4.04
8589 8770 6.264292 TCCAAATGAAGAAATGGAAACTCGAA 59.736 34.615 0.00 0.00 38.95 3.71
8590 8771 6.922957 CCAAATGAAGAAATGGAAACTCGAAA 59.077 34.615 0.00 0.00 34.82 3.46
8591 8772 7.437862 CCAAATGAAGAAATGGAAACTCGAAAA 59.562 33.333 0.00 0.00 34.82 2.29
8592 8773 8.482429 CAAATGAAGAAATGGAAACTCGAAAAG 58.518 33.333 0.00 0.00 0.00 2.27
8593 8774 6.072112 TGAAGAAATGGAAACTCGAAAAGG 57.928 37.500 0.00 0.00 0.00 3.11
8594 8775 5.825679 TGAAGAAATGGAAACTCGAAAAGGA 59.174 36.000 0.00 0.00 0.00 3.36
8595 8776 6.490040 TGAAGAAATGGAAACTCGAAAAGGAT 59.510 34.615 0.00 0.00 0.00 3.24
8596 8777 6.502136 AGAAATGGAAACTCGAAAAGGATC 57.498 37.500 0.00 0.00 0.00 3.36
8597 8778 5.416013 AGAAATGGAAACTCGAAAAGGATCC 59.584 40.000 2.48 2.48 35.48 3.36
8598 8779 4.576330 ATGGAAACTCGAAAAGGATCCT 57.424 40.909 9.02 9.02 35.77 3.24
8599 8780 4.367039 TGGAAACTCGAAAAGGATCCTT 57.633 40.909 21.89 21.89 35.77 3.36
8600 8781 4.324267 TGGAAACTCGAAAAGGATCCTTC 58.676 43.478 27.20 15.03 35.77 3.46
8601 8782 4.041691 TGGAAACTCGAAAAGGATCCTTCT 59.958 41.667 27.20 14.65 35.77 2.85
8602 8783 4.393371 GGAAACTCGAAAAGGATCCTTCTG 59.607 45.833 27.20 18.60 34.84 3.02
8603 8784 4.891992 AACTCGAAAAGGATCCTTCTGA 57.108 40.909 27.20 21.38 34.84 3.27
8604 8785 5.428184 AACTCGAAAAGGATCCTTCTGAT 57.572 39.130 27.20 13.74 34.84 2.90
8605 8786 5.428184 ACTCGAAAAGGATCCTTCTGATT 57.572 39.130 27.20 17.36 34.84 2.57
8606 8787 5.423886 ACTCGAAAAGGATCCTTCTGATTC 58.576 41.667 27.20 23.01 34.84 2.52
8607 8788 5.188751 ACTCGAAAAGGATCCTTCTGATTCT 59.811 40.000 27.20 7.13 41.42 2.40
8609 8790 7.093289 ACTCGAAAAGGATCCTTCTGATTCTTA 60.093 37.037 27.20 15.04 46.74 2.10
8610 8791 7.620880 TCGAAAAGGATCCTTCTGATTCTTAA 58.379 34.615 27.20 11.76 46.74 1.85
8611 8792 8.100791 TCGAAAAGGATCCTTCTGATTCTTAAA 58.899 33.333 27.20 9.68 46.74 1.52
8612 8793 8.394121 CGAAAAGGATCCTTCTGATTCTTAAAG 58.606 37.037 27.20 9.97 46.74 1.85
8613 8794 9.454859 GAAAAGGATCCTTCTGATTCTTAAAGA 57.545 33.333 27.20 0.00 46.74 2.52
8614 8795 9.813826 AAAAGGATCCTTCTGATTCTTAAAGAA 57.186 29.630 27.20 0.00 46.74 2.52
8615 8796 9.987726 AAAGGATCCTTCTGATTCTTAAAGAAT 57.012 29.630 27.20 2.49 46.74 2.40
8616 8797 8.977267 AGGATCCTTCTGATTCTTAAAGAATG 57.023 34.615 9.02 0.00 44.41 2.67
8617 8798 8.776119 AGGATCCTTCTGATTCTTAAAGAATGA 58.224 33.333 9.02 0.00 44.41 2.57
8618 8799 9.054922 GGATCCTTCTGATTCTTAAAGAATGAG 57.945 37.037 3.84 0.00 44.41 2.90
8619 8800 9.612066 GATCCTTCTGATTCTTAAAGAATGAGT 57.388 33.333 0.00 0.00 44.41 3.41
8620 8801 9.612066 ATCCTTCTGATTCTTAAAGAATGAGTC 57.388 33.333 0.00 1.04 44.41 3.36
8621 8802 8.597167 TCCTTCTGATTCTTAAAGAATGAGTCA 58.403 33.333 0.00 0.00 44.41 3.41
8622 8803 9.393512 CCTTCTGATTCTTAAAGAATGAGTCAT 57.606 33.333 0.00 0.00 44.41 3.06
8624 8805 9.948964 TTCTGATTCTTAAAGAATGAGTCATCA 57.051 29.630 5.98 0.00 44.41 3.07
8625 8806 9.948964 TCTGATTCTTAAAGAATGAGTCATCAA 57.051 29.630 5.98 0.00 44.41 2.57
8631 8812 9.519191 TCTTAAAGAATGAGTCATCAAAATGGA 57.481 29.630 5.98 0.00 39.39 3.41
8632 8813 9.565213 CTTAAAGAATGAGTCATCAAAATGGAC 57.435 33.333 5.98 0.00 39.39 4.02
8633 8814 7.528996 AAAGAATGAGTCATCAAAATGGACA 57.471 32.000 5.98 0.00 39.39 4.02
8634 8815 7.528996 AAGAATGAGTCATCAAAATGGACAA 57.471 32.000 5.98 0.00 39.39 3.18
8635 8816 7.528996 AGAATGAGTCATCAAAATGGACAAA 57.471 32.000 5.98 0.00 39.39 2.83
8636 8817 7.954835 AGAATGAGTCATCAAAATGGACAAAA 58.045 30.769 5.98 0.00 39.39 2.44
8637 8818 8.423349 AGAATGAGTCATCAAAATGGACAAAAA 58.577 29.630 5.98 0.00 39.39 1.94
8638 8819 8.597662 AATGAGTCATCAAAATGGACAAAAAG 57.402 30.769 5.98 0.00 39.39 2.27
8639 8820 6.514947 TGAGTCATCAAAATGGACAAAAAGG 58.485 36.000 0.00 0.00 33.42 3.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 8.037166 GGCATTGAAAATTTAGAGGTGAAGAAT 58.963 33.333 0.00 0.00 0.00 2.40
135 136 1.938926 GCTTCTTCGAGCAGCTCAGTT 60.939 52.381 22.49 0.00 42.25 3.16
137 138 0.108709 AGCTTCTTCGAGCAGCTCAG 60.109 55.000 22.49 12.84 45.12 3.35
138 139 1.970639 AGCTTCTTCGAGCAGCTCA 59.029 52.632 22.49 6.83 45.12 4.26
139 140 4.908790 AGCTTCTTCGAGCAGCTC 57.091 55.556 12.94 12.94 45.12 4.09
140 141 1.153862 CGAGCTTCTTCGAGCAGCT 60.154 57.895 13.25 13.25 46.82 4.24
141 142 1.153939 TCGAGCTTCTTCGAGCAGC 60.154 57.895 4.78 4.78 44.00 5.25
146 147 1.215647 GCCCTTCGAGCTTCTTCGA 59.784 57.895 0.00 0.00 46.86 3.71
147 148 1.216710 AGCCCTTCGAGCTTCTTCG 59.783 57.895 0.00 0.00 37.24 3.79
153 154 2.206576 ATGAAAAAGCCCTTCGAGCT 57.793 45.000 0.00 0.00 44.19 4.09
154 155 2.097629 GGTATGAAAAAGCCCTTCGAGC 59.902 50.000 0.00 0.00 0.00 5.03
155 156 2.683362 GGGTATGAAAAAGCCCTTCGAG 59.317 50.000 0.00 0.00 38.12 4.04
156 157 2.718563 GGGTATGAAAAAGCCCTTCGA 58.281 47.619 0.00 0.00 38.12 3.71
162 163 2.233676 CCAGTTGGGGTATGAAAAAGCC 59.766 50.000 0.00 0.00 0.00 4.35
163 164 2.897326 ACCAGTTGGGGTATGAAAAAGC 59.103 45.455 2.79 0.00 40.07 3.51
208 228 4.891168 TCGGTTCTCACAAGTATGCCTATA 59.109 41.667 0.00 0.00 0.00 1.31
247 267 3.267812 AGCTTATGTCATATGGGGGATGG 59.732 47.826 2.13 0.00 0.00 3.51
249 269 4.812096 GCAAGCTTATGTCATATGGGGGAT 60.812 45.833 0.00 0.00 0.00 3.85
253 273 2.821969 GGGCAAGCTTATGTCATATGGG 59.178 50.000 0.00 0.00 0.00 4.00
319 339 4.024893 CGCAAGCTTTCTAACAAAGAGTGA 60.025 41.667 0.00 0.00 35.05 3.41
349 391 9.354673 CCCTTCACATATTTGAGTATACCAATT 57.645 33.333 0.00 3.61 0.00 2.32
426 469 7.759489 TTATTCTGCTTTGGAAGAGCTAAAA 57.241 32.000 0.00 0.00 40.75 1.52
555 599 9.906660 TTTTATGCTTGTTCGAAATATGAAGTT 57.093 25.926 0.00 0.00 0.00 2.66
556 600 9.341899 GTTTTATGCTTGTTCGAAATATGAAGT 57.658 29.630 0.00 0.00 0.00 3.01
557 601 9.559958 AGTTTTATGCTTGTTCGAAATATGAAG 57.440 29.630 0.00 0.00 0.00 3.02
563 607 8.021396 GGAGTTAGTTTTATGCTTGTTCGAAAT 58.979 33.333 0.00 0.00 0.00 2.17
564 608 7.357303 GGAGTTAGTTTTATGCTTGTTCGAAA 58.643 34.615 0.00 0.00 0.00 3.46
565 609 6.072893 GGGAGTTAGTTTTATGCTTGTTCGAA 60.073 38.462 0.00 0.00 0.00 3.71
566 610 5.410439 GGGAGTTAGTTTTATGCTTGTTCGA 59.590 40.000 0.00 0.00 0.00 3.71
567 611 5.411669 AGGGAGTTAGTTTTATGCTTGTTCG 59.588 40.000 0.00 0.00 0.00 3.95
568 612 6.127980 GGAGGGAGTTAGTTTTATGCTTGTTC 60.128 42.308 0.00 0.00 0.00 3.18
569 613 5.710567 GGAGGGAGTTAGTTTTATGCTTGTT 59.289 40.000 0.00 0.00 0.00 2.83
570 614 5.014228 AGGAGGGAGTTAGTTTTATGCTTGT 59.986 40.000 0.00 0.00 0.00 3.16
571 615 5.501156 AGGAGGGAGTTAGTTTTATGCTTG 58.499 41.667 0.00 0.00 0.00 4.01
572 616 5.780958 AGGAGGGAGTTAGTTTTATGCTT 57.219 39.130 0.00 0.00 0.00 3.91
573 617 5.489278 AGAAGGAGGGAGTTAGTTTTATGCT 59.511 40.000 0.00 0.00 0.00 3.79
574 618 5.746284 AGAAGGAGGGAGTTAGTTTTATGC 58.254 41.667 0.00 0.00 0.00 3.14
575 619 8.929487 AGATAGAAGGAGGGAGTTAGTTTTATG 58.071 37.037 0.00 0.00 0.00 1.90
576 620 8.929487 CAGATAGAAGGAGGGAGTTAGTTTTAT 58.071 37.037 0.00 0.00 0.00 1.40
577 621 7.899709 ACAGATAGAAGGAGGGAGTTAGTTTTA 59.100 37.037 0.00 0.00 0.00 1.52
578 622 6.731448 ACAGATAGAAGGAGGGAGTTAGTTTT 59.269 38.462 0.00 0.00 0.00 2.43
579 623 6.265304 ACAGATAGAAGGAGGGAGTTAGTTT 58.735 40.000 0.00 0.00 0.00 2.66
580 624 5.844601 ACAGATAGAAGGAGGGAGTTAGTT 58.155 41.667 0.00 0.00 0.00 2.24
581 625 5.475398 ACAGATAGAAGGAGGGAGTTAGT 57.525 43.478 0.00 0.00 0.00 2.24
582 626 7.832187 CCTATACAGATAGAAGGAGGGAGTTAG 59.168 44.444 0.00 0.00 37.81 2.34
583 627 7.257455 CCCTATACAGATAGAAGGAGGGAGTTA 60.257 44.444 0.00 0.00 44.48 2.24
584 628 6.469533 CCCTATACAGATAGAAGGAGGGAGTT 60.470 46.154 0.00 0.00 44.48 3.01
585 629 5.015817 CCCTATACAGATAGAAGGAGGGAGT 59.984 48.000 0.00 0.00 44.48 3.85
586 630 5.254267 TCCCTATACAGATAGAAGGAGGGAG 59.746 48.000 2.13 0.00 45.16 4.30
587 631 5.538082 CCCTATACAGATAGAAGGAGGGA 57.462 47.826 0.00 0.00 44.48 4.20
588 632 5.015817 AGTCCCTATACAGATAGAAGGAGGG 59.984 48.000 0.00 0.00 43.29 4.30
589 633 6.147437 AGTCCCTATACAGATAGAAGGAGG 57.853 45.833 0.00 0.00 37.81 4.30
590 634 9.184523 CATTAGTCCCTATACAGATAGAAGGAG 57.815 40.741 0.00 0.00 37.81 3.69
591 635 7.616150 GCATTAGTCCCTATACAGATAGAAGGA 59.384 40.741 0.00 0.00 37.81 3.36
592 636 7.415765 CGCATTAGTCCCTATACAGATAGAAGG 60.416 44.444 0.00 0.00 37.81 3.46
593 637 7.121463 ACGCATTAGTCCCTATACAGATAGAAG 59.879 40.741 0.00 0.00 37.81 2.85
594 638 6.946583 ACGCATTAGTCCCTATACAGATAGAA 59.053 38.462 0.00 0.00 37.81 2.10
595 639 6.482524 ACGCATTAGTCCCTATACAGATAGA 58.517 40.000 0.00 0.00 37.81 1.98
596 640 6.761099 ACGCATTAGTCCCTATACAGATAG 57.239 41.667 0.00 0.00 35.67 2.08
597 641 7.534723 AAACGCATTAGTCCCTATACAGATA 57.465 36.000 0.00 0.00 0.00 1.98
598 642 6.420913 AAACGCATTAGTCCCTATACAGAT 57.579 37.500 0.00 0.00 0.00 2.90
599 643 5.864418 AAACGCATTAGTCCCTATACAGA 57.136 39.130 0.00 0.00 0.00 3.41
600 644 6.920569 AAAAACGCATTAGTCCCTATACAG 57.079 37.500 0.00 0.00 0.00 2.74
601 645 6.987992 CCTAAAAACGCATTAGTCCCTATACA 59.012 38.462 0.00 0.00 0.00 2.29
602 646 7.170489 GTCCTAAAAACGCATTAGTCCCTATAC 59.830 40.741 0.00 0.00 0.00 1.47
603 647 7.212274 GTCCTAAAAACGCATTAGTCCCTATA 58.788 38.462 0.00 0.00 0.00 1.31
604 648 6.053650 GTCCTAAAAACGCATTAGTCCCTAT 58.946 40.000 0.00 0.00 0.00 2.57
605 649 5.422145 GTCCTAAAAACGCATTAGTCCCTA 58.578 41.667 0.00 0.00 0.00 3.53
606 650 4.259356 GTCCTAAAAACGCATTAGTCCCT 58.741 43.478 0.00 0.00 0.00 4.20
607 651 3.376234 GGTCCTAAAAACGCATTAGTCCC 59.624 47.826 0.00 0.00 0.00 4.46
608 652 3.063045 CGGTCCTAAAAACGCATTAGTCC 59.937 47.826 0.00 0.00 0.00 3.85
609 653 4.254745 CGGTCCTAAAAACGCATTAGTC 57.745 45.455 0.00 0.00 0.00 2.59
617 661 1.874872 TCAAAGGCGGTCCTAAAAACG 59.125 47.619 0.00 0.00 43.40 3.60
618 662 2.882761 AGTCAAAGGCGGTCCTAAAAAC 59.117 45.455 0.00 0.00 43.40 2.43
619 663 3.217681 AGTCAAAGGCGGTCCTAAAAA 57.782 42.857 0.00 0.00 43.40 1.94
620 664 2.943036 AGTCAAAGGCGGTCCTAAAA 57.057 45.000 0.00 0.00 43.40 1.52
621 665 4.020039 TCAATAGTCAAAGGCGGTCCTAAA 60.020 41.667 0.00 0.00 43.40 1.85
622 666 3.516300 TCAATAGTCAAAGGCGGTCCTAA 59.484 43.478 0.00 0.00 43.40 2.69
623 667 3.101437 TCAATAGTCAAAGGCGGTCCTA 58.899 45.455 0.00 0.00 43.40 2.94
625 669 2.007608 GTCAATAGTCAAAGGCGGTCC 58.992 52.381 0.00 0.00 0.00 4.46
626 670 2.695359 TGTCAATAGTCAAAGGCGGTC 58.305 47.619 0.00 0.00 0.00 4.79
627 671 2.851263 TGTCAATAGTCAAAGGCGGT 57.149 45.000 0.00 0.00 0.00 5.68
628 672 3.334691 TCTTGTCAATAGTCAAAGGCGG 58.665 45.455 0.00 0.00 0.00 6.13
629 673 5.551760 AATCTTGTCAATAGTCAAAGGCG 57.448 39.130 0.00 0.00 0.00 5.52
684 728 8.227119 CGTATGTGAAATGAACTTACAATGACA 58.773 33.333 0.00 0.00 31.72 3.58
685 729 8.440059 TCGTATGTGAAATGAACTTACAATGAC 58.560 33.333 0.00 0.00 31.72 3.06
686 730 8.541133 TCGTATGTGAAATGAACTTACAATGA 57.459 30.769 0.00 0.00 31.72 2.57
687 731 9.773328 ATTCGTATGTGAAATGAACTTACAATG 57.227 29.630 0.00 0.00 31.72 2.82
714 758 9.920133 TGCAACTTAAACAAAGCATATCATTAA 57.080 25.926 0.00 0.00 38.93 1.40
716 760 8.875803 CATGCAACTTAAACAAAGCATATCATT 58.124 29.630 0.00 0.00 40.38 2.57
717 761 8.036575 ACATGCAACTTAAACAAAGCATATCAT 58.963 29.630 0.00 0.00 40.38 2.45
718 762 7.377398 ACATGCAACTTAAACAAAGCATATCA 58.623 30.769 0.00 0.00 40.38 2.15
719 763 7.541783 TGACATGCAACTTAAACAAAGCATATC 59.458 33.333 0.00 0.00 40.38 1.63
720 764 7.377398 TGACATGCAACTTAAACAAAGCATAT 58.623 30.769 0.00 0.00 40.38 1.78
721 765 6.743110 TGACATGCAACTTAAACAAAGCATA 58.257 32.000 0.00 0.00 40.38 3.14
722 766 5.599732 TGACATGCAACTTAAACAAAGCAT 58.400 33.333 0.00 0.00 42.82 3.79
723 767 5.003692 TGACATGCAACTTAAACAAAGCA 57.996 34.783 0.00 0.00 38.93 3.91
724 768 7.816945 ATATGACATGCAACTTAAACAAAGC 57.183 32.000 0.00 0.00 38.93 3.51
733 777 9.293404 AGAGCAATAATATATGACATGCAACTT 57.707 29.630 10.78 0.00 34.89 2.66
734 778 8.859236 AGAGCAATAATATATGACATGCAACT 57.141 30.769 10.78 7.52 34.89 3.16
735 779 9.979270 GTAGAGCAATAATATATGACATGCAAC 57.021 33.333 10.78 5.96 34.89 4.17
736 780 9.166173 GGTAGAGCAATAATATATGACATGCAA 57.834 33.333 10.78 0.00 34.89 4.08
737 781 8.320617 TGGTAGAGCAATAATATATGACATGCA 58.679 33.333 10.78 0.00 34.89 3.96
738 782 8.722480 TGGTAGAGCAATAATATATGACATGC 57.278 34.615 0.00 2.62 0.00 4.06
756 800 8.630037 AAGTTTAACTTTCACCAAATGGTAGAG 58.370 33.333 4.30 6.19 40.23 2.43
757 801 8.410141 CAAGTTTAACTTTCACCAAATGGTAGA 58.590 33.333 7.71 2.99 40.84 2.59
758 802 8.410141 TCAAGTTTAACTTTCACCAAATGGTAG 58.590 33.333 7.71 2.08 40.84 3.18
759 803 8.294954 TCAAGTTTAACTTTCACCAAATGGTA 57.705 30.769 7.71 0.00 40.84 3.25
760 804 7.176589 TCAAGTTTAACTTTCACCAAATGGT 57.823 32.000 7.71 0.00 42.54 3.55
761 805 8.485976 TTTCAAGTTTAACTTTCACCAAATGG 57.514 30.769 7.71 0.00 36.03 3.16
785 829 4.045783 CGGGTTTTGAATACTGCGTTTTT 58.954 39.130 0.00 0.00 0.00 1.94
786 830 3.067040 ACGGGTTTTGAATACTGCGTTTT 59.933 39.130 0.00 0.00 0.00 2.43
787 831 2.619646 ACGGGTTTTGAATACTGCGTTT 59.380 40.909 0.00 0.00 0.00 3.60
788 832 2.031508 CACGGGTTTTGAATACTGCGTT 60.032 45.455 0.00 0.00 0.00 4.84
789 833 1.533731 CACGGGTTTTGAATACTGCGT 59.466 47.619 0.00 0.00 0.00 5.24
790 834 1.801771 TCACGGGTTTTGAATACTGCG 59.198 47.619 0.00 0.00 0.00 5.18
791 835 2.412325 CGTCACGGGTTTTGAATACTGC 60.412 50.000 0.00 0.00 0.00 4.40
792 836 3.061322 TCGTCACGGGTTTTGAATACTG 58.939 45.455 0.00 0.00 0.00 2.74
793 837 3.323243 CTCGTCACGGGTTTTGAATACT 58.677 45.455 0.00 0.00 0.00 2.12
794 838 2.159747 GCTCGTCACGGGTTTTGAATAC 60.160 50.000 0.00 0.00 0.00 1.89
855 899 0.913924 AAACGGGATGGATTACGGGT 59.086 50.000 0.00 0.00 0.00 5.28
933 978 1.261238 GGTGTGGGGAGAGGTCAGAG 61.261 65.000 0.00 0.00 0.00 3.35
1292 1337 1.619975 TCCTCGTCCTCCTCCTCCT 60.620 63.158 0.00 0.00 0.00 3.69
1293 1338 1.454295 GTCCTCGTCCTCCTCCTCC 60.454 68.421 0.00 0.00 0.00 4.30
1294 1339 1.820481 CGTCCTCGTCCTCCTCCTC 60.820 68.421 0.00 0.00 0.00 3.71
1295 1340 2.260088 CTCGTCCTCGTCCTCCTCCT 62.260 65.000 0.00 0.00 38.33 3.69
1296 1341 1.820481 CTCGTCCTCGTCCTCCTCC 60.820 68.421 0.00 0.00 38.33 4.30
1297 1342 1.820481 CCTCGTCCTCGTCCTCCTC 60.820 68.421 0.00 0.00 38.33 3.71
1427 1472 2.685380 CCTCCCCAGGCTTCTCGT 60.685 66.667 0.00 0.00 30.98 4.18
1452 1497 3.385384 CCGTCAGCCTCAGCCTCA 61.385 66.667 0.00 0.00 41.25 3.86
1470 1527 1.821753 TCCTGCTCCTTCTTCTCTTCG 59.178 52.381 0.00 0.00 0.00 3.79
1533 1590 1.080025 GTCCTCCTGAAACCGGTCG 60.080 63.158 8.04 0.00 0.00 4.79
1652 1709 6.042781 TCTCACCTAAGCCTTCTTCTGTAAAA 59.957 38.462 0.00 0.00 33.85 1.52
1854 1944 9.817809 TCTTTACTACCATAACAGCATCTTAAG 57.182 33.333 0.00 0.00 0.00 1.85
1877 1967 3.091633 ACATTTGCCAGCCATAGTCTT 57.908 42.857 0.00 0.00 0.00 3.01
1886 1976 6.852664 ACTAAATAACACTACATTTGCCAGC 58.147 36.000 0.00 0.00 0.00 4.85
1932 2022 3.629142 AATTCCAAACGGAGGGAGTAG 57.371 47.619 0.00 0.00 34.02 2.57
1933 2023 3.839490 TGTAATTCCAAACGGAGGGAGTA 59.161 43.478 0.00 0.00 34.02 2.59
1934 2024 2.640826 TGTAATTCCAAACGGAGGGAGT 59.359 45.455 0.00 0.00 34.02 3.85
1935 2025 3.343941 TGTAATTCCAAACGGAGGGAG 57.656 47.619 0.00 0.00 34.02 4.30
1936 2026 3.009695 ACATGTAATTCCAAACGGAGGGA 59.990 43.478 0.00 0.00 32.88 4.20
1937 2027 3.352648 ACATGTAATTCCAAACGGAGGG 58.647 45.455 0.00 0.00 32.88 4.30
1938 2028 4.261801 AGACATGTAATTCCAAACGGAGG 58.738 43.478 0.00 0.00 32.88 4.30
1939 2029 4.032900 CGAGACATGTAATTCCAAACGGAG 59.967 45.833 0.00 0.00 32.88 4.63
1940 2030 3.930229 CGAGACATGTAATTCCAAACGGA 59.070 43.478 0.00 0.00 0.00 4.69
1941 2031 3.930229 TCGAGACATGTAATTCCAAACGG 59.070 43.478 0.00 0.00 0.00 4.44
1942 2032 5.524511 TTCGAGACATGTAATTCCAAACG 57.475 39.130 0.00 0.00 0.00 3.60
1943 2033 7.273381 CCATTTTCGAGACATGTAATTCCAAAC 59.727 37.037 0.00 0.00 0.00 2.93
1944 2034 7.175816 TCCATTTTCGAGACATGTAATTCCAAA 59.824 33.333 0.00 0.00 0.00 3.28
1945 2035 6.657117 TCCATTTTCGAGACATGTAATTCCAA 59.343 34.615 0.00 0.00 0.00 3.53
1946 2036 6.176896 TCCATTTTCGAGACATGTAATTCCA 58.823 36.000 0.00 0.00 0.00 3.53
1947 2037 6.677781 TCCATTTTCGAGACATGTAATTCC 57.322 37.500 0.00 0.00 0.00 3.01
1948 2038 7.697691 ACATCCATTTTCGAGACATGTAATTC 58.302 34.615 0.00 0.00 0.00 2.17
1949 2039 7.630242 ACATCCATTTTCGAGACATGTAATT 57.370 32.000 0.00 0.00 0.00 1.40
1950 2040 8.908786 ATACATCCATTTTCGAGACATGTAAT 57.091 30.769 0.00 0.00 31.02 1.89
1951 2041 8.204160 AGATACATCCATTTTCGAGACATGTAA 58.796 33.333 0.00 0.00 31.02 2.41
1952 2042 7.726216 AGATACATCCATTTTCGAGACATGTA 58.274 34.615 0.00 0.00 31.61 2.29
1953 2043 6.586344 AGATACATCCATTTTCGAGACATGT 58.414 36.000 0.00 0.00 0.00 3.21
1954 2044 8.084684 TCTAGATACATCCATTTTCGAGACATG 58.915 37.037 0.00 0.00 0.00 3.21
1955 2045 8.183104 TCTAGATACATCCATTTTCGAGACAT 57.817 34.615 0.00 0.00 0.00 3.06
1956 2046 7.582667 TCTAGATACATCCATTTTCGAGACA 57.417 36.000 0.00 0.00 0.00 3.41
1957 2047 8.138712 AGTTCTAGATACATCCATTTTCGAGAC 58.861 37.037 0.00 0.00 0.00 3.36
1958 2048 8.239038 AGTTCTAGATACATCCATTTTCGAGA 57.761 34.615 0.00 0.00 0.00 4.04
1959 2049 9.967346 TTAGTTCTAGATACATCCATTTTCGAG 57.033 33.333 0.00 0.00 0.00 4.04
1987 2077 8.993121 CGCAAAAATGGATGTATCTAGACTTAT 58.007 33.333 0.00 0.00 0.00 1.73
1988 2078 8.201464 TCGCAAAAATGGATGTATCTAGACTTA 58.799 33.333 0.00 0.00 0.00 2.24
1989 2079 7.011482 GTCGCAAAAATGGATGTATCTAGACTT 59.989 37.037 0.00 0.00 0.00 3.01
1990 2080 6.480320 GTCGCAAAAATGGATGTATCTAGACT 59.520 38.462 0.00 0.00 0.00 3.24
1991 2081 6.257849 TGTCGCAAAAATGGATGTATCTAGAC 59.742 38.462 0.00 0.00 0.00 2.59
1992 2082 6.345298 TGTCGCAAAAATGGATGTATCTAGA 58.655 36.000 0.00 0.00 0.00 2.43
1993 2083 6.603237 TGTCGCAAAAATGGATGTATCTAG 57.397 37.500 0.00 0.00 0.00 2.43
1994 2084 6.597672 ACTTGTCGCAAAAATGGATGTATCTA 59.402 34.615 0.00 0.00 0.00 1.98
1995 2085 5.415701 ACTTGTCGCAAAAATGGATGTATCT 59.584 36.000 0.00 0.00 0.00 1.98
1996 2086 5.640732 ACTTGTCGCAAAAATGGATGTATC 58.359 37.500 0.00 0.00 0.00 2.24
1997 2087 5.643379 ACTTGTCGCAAAAATGGATGTAT 57.357 34.783 0.00 0.00 0.00 2.29
1998 2088 6.561737 TTACTTGTCGCAAAAATGGATGTA 57.438 33.333 0.00 0.00 0.00 2.29
1999 2089 5.446143 TTACTTGTCGCAAAAATGGATGT 57.554 34.783 0.00 0.00 0.00 3.06
2000 2090 6.034898 GGAATTACTTGTCGCAAAAATGGATG 59.965 38.462 0.00 0.00 0.00 3.51
2001 2091 6.099341 GGAATTACTTGTCGCAAAAATGGAT 58.901 36.000 0.00 0.00 0.00 3.41
2002 2092 5.465935 GGAATTACTTGTCGCAAAAATGGA 58.534 37.500 0.00 0.00 0.00 3.41
2003 2093 4.323336 CGGAATTACTTGTCGCAAAAATGG 59.677 41.667 0.00 0.00 0.00 3.16
2004 2094 5.150683 TCGGAATTACTTGTCGCAAAAATG 58.849 37.500 0.00 0.00 0.00 2.32
2005 2095 5.365403 TCGGAATTACTTGTCGCAAAAAT 57.635 34.783 0.00 0.00 0.00 1.82
2006 2096 4.815040 TCGGAATTACTTGTCGCAAAAA 57.185 36.364 0.00 0.00 0.00 1.94
2007 2097 4.529446 GTTCGGAATTACTTGTCGCAAAA 58.471 39.130 0.00 0.00 0.00 2.44
2008 2098 3.363182 CGTTCGGAATTACTTGTCGCAAA 60.363 43.478 0.00 0.00 0.00 3.68
2009 2099 2.156117 CGTTCGGAATTACTTGTCGCAA 59.844 45.455 0.00 0.00 0.00 4.85
2010 2100 1.722464 CGTTCGGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
2011 2101 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19
2012 2102 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
2013 2103 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
2014 2104 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
2015 2105 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
2016 2106 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
2017 2107 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
2018 2108 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
2019 2109 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
2020 2110 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
2021 2111 1.341778 ACTACTCCCTCCGTTCGGAAT 60.342 52.381 14.79 2.09 33.41 3.01
2022 2112 0.038744 ACTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
2023 2113 0.038744 AACTACTCCCTCCGTTCGGA 59.961 55.000 13.34 13.34 0.00 4.55
2024 2114 0.455005 GAACTACTCCCTCCGTTCGG 59.545 60.000 4.74 4.74 0.00 4.30
2025 2115 1.171308 TGAACTACTCCCTCCGTTCG 58.829 55.000 0.00 0.00 38.78 3.95
2026 2116 3.194968 TCATTGAACTACTCCCTCCGTTC 59.805 47.826 0.00 0.00 37.02 3.95
2027 2117 3.170717 TCATTGAACTACTCCCTCCGTT 58.829 45.455 0.00 0.00 0.00 4.44
2028 2118 2.816411 TCATTGAACTACTCCCTCCGT 58.184 47.619 0.00 0.00 0.00 4.69
2029 2119 3.493350 CCATCATTGAACTACTCCCTCCG 60.493 52.174 0.00 0.00 0.00 4.63
2030 2120 3.745797 GCCATCATTGAACTACTCCCTCC 60.746 52.174 0.00 0.00 0.00 4.30
2031 2121 3.118261 TGCCATCATTGAACTACTCCCTC 60.118 47.826 0.00 0.00 0.00 4.30
2032 2122 2.846206 TGCCATCATTGAACTACTCCCT 59.154 45.455 0.00 0.00 0.00 4.20
2033 2123 3.209410 CTGCCATCATTGAACTACTCCC 58.791 50.000 0.00 0.00 0.00 4.30
2034 2124 3.624861 CACTGCCATCATTGAACTACTCC 59.375 47.826 0.00 0.00 0.00 3.85
2035 2125 4.256920 ACACTGCCATCATTGAACTACTC 58.743 43.478 0.00 0.00 0.00 2.59
2036 2126 4.292186 ACACTGCCATCATTGAACTACT 57.708 40.909 0.00 0.00 0.00 2.57
2037 2127 5.376854 AAACACTGCCATCATTGAACTAC 57.623 39.130 0.00 0.00 0.00 2.73
2038 2128 6.403866 AAAAACACTGCCATCATTGAACTA 57.596 33.333 0.00 0.00 0.00 2.24
2039 2129 4.942761 AAAACACTGCCATCATTGAACT 57.057 36.364 0.00 0.00 0.00 3.01
2064 2154 4.245660 CTCTTGAGGCACGATTTGAAGTA 58.754 43.478 0.00 0.00 0.00 2.24
2074 2164 2.163818 TAACAACCTCTTGAGGCACG 57.836 50.000 15.93 7.62 0.00 5.34
2161 2251 4.343231 ACATTGCATACCTCCAAACATGA 58.657 39.130 0.00 0.00 0.00 3.07
2246 2336 2.363306 TTTTGGCAGAAAGAGCTGGA 57.637 45.000 0.00 0.00 36.41 3.86
2270 2360 3.500448 TTGCAGACCAACAATGTAGGA 57.500 42.857 0.00 0.00 0.00 2.94
2365 2455 0.875474 AGCCGCAAATGCAACACAAC 60.875 50.000 6.18 0.00 42.21 3.32
2383 2473 2.119801 ACCAAGATACCAGCTTGCAG 57.880 50.000 0.00 0.00 41.00 4.41
2764 2857 3.866379 ATCCTTGGCGCTGTTGGCA 62.866 57.895 7.64 0.00 43.36 4.92
2779 2872 0.335019 AGGTTAGCCCCACCAAATCC 59.665 55.000 0.00 0.00 36.67 3.01
2787 2880 1.431195 TTCAGCCAAGGTTAGCCCCA 61.431 55.000 0.00 0.00 34.57 4.96
2825 2918 5.859205 ACAAAAATATCAGCATTCCTCCC 57.141 39.130 0.00 0.00 0.00 4.30
3104 3204 3.203934 CCTCCCTCCTCTTGAAAATCCAT 59.796 47.826 0.00 0.00 0.00 3.41
3165 3265 1.543871 GGCCGGTTCTGGTTTTCACTA 60.544 52.381 1.90 0.00 0.00 2.74
3344 3444 5.295292 AGTGATGACAAGAAAAGTGTGTGAG 59.705 40.000 0.00 0.00 0.00 3.51
3396 3496 1.742880 GCTGCAGAATGAGCGACCA 60.743 57.895 20.43 0.00 39.69 4.02
3539 3639 0.987294 TCCCTTCTTTGAGCTCCCAG 59.013 55.000 12.15 7.10 0.00 4.45
3676 3776 1.502231 CCTCGGCATGAAACCTATCG 58.498 55.000 0.00 0.00 0.00 2.92
3769 3869 8.108378 TGTTATTAGGGGATTGACCAGAATTA 57.892 34.615 0.00 0.00 41.20 1.40
3868 3968 3.653539 TGCTGTTGCGTAGAAACTCTA 57.346 42.857 0.00 0.00 43.34 2.43
3871 3971 4.036262 TGATTTTGCTGTTGCGTAGAAACT 59.964 37.500 0.00 0.00 43.34 2.66
3979 4079 0.037975 CACTTGGTGAAGCATTGCCC 60.038 55.000 4.70 0.00 35.23 5.36
4016 4116 3.914312 TCTCGTCACTTTCAGTTGATCC 58.086 45.455 0.00 0.00 0.00 3.36
4186 4286 3.795041 CCTGGCAGGAGAGCTGGG 61.795 72.222 29.96 0.00 37.67 4.45
4245 4345 8.248253 CCTTGGGTACATTTTACTCATTAAACC 58.752 37.037 0.00 0.00 28.84 3.27
4526 4626 4.088634 CCATTGGAGAACTTCCCATTGAA 58.911 43.478 15.64 0.00 46.19 2.69
4580 4680 1.662629 CTTACTTGACTCTGCATGGCG 59.337 52.381 0.00 0.00 0.00 5.69
4584 4684 5.468072 CACTGTTTCTTACTTGACTCTGCAT 59.532 40.000 0.00 0.00 0.00 3.96
4702 4804 0.969149 TGCGCCTATGTATGGAGGAG 59.031 55.000 4.18 0.00 34.46 3.69
4801 4904 0.744771 GCCTCGGGGAGAATGACAAC 60.745 60.000 4.80 0.00 33.58 3.32
5040 5185 1.007964 CTGGACAGAGATAGCCGCG 60.008 63.158 0.00 0.00 0.00 6.46
5087 5232 1.748879 CCATACAGGTTGCCGGTGG 60.749 63.158 1.90 0.00 33.35 4.61
5247 5392 1.283793 CAGTTTTCTGCCCACTGCG 59.716 57.895 0.00 0.00 45.60 5.18
5300 5445 1.086067 CACATACCAGCAGCTCGTGG 61.086 60.000 2.41 9.04 39.98 4.94
5867 6012 7.761409 TGCCATGTAAGCTCTATTTTGTAAAG 58.239 34.615 0.00 0.00 0.00 1.85
6062 6208 9.056005 CGTGAAGGATAAATAGGAAATGAATGA 57.944 33.333 0.00 0.00 0.00 2.57
6185 6331 1.746787 ACGCCATTTCGTTATTTCCCC 59.253 47.619 0.00 0.00 40.07 4.81
6236 6382 7.173218 GGTGATGAAAATCTAACAGACAGAACA 59.827 37.037 0.00 0.00 0.00 3.18
6342 6488 8.649841 CGAATGATTCAGTGCAAATTATGTTTT 58.350 29.630 5.95 0.00 0.00 2.43
6367 6513 5.292834 AGAGACAACAAGATACATGCATTCG 59.707 40.000 0.00 0.00 0.00 3.34
6503 6650 4.963318 TCAGCTATCAAGTATCCCCTTG 57.037 45.455 0.00 0.00 42.57 3.61
6937 7084 8.091449 CCCCAAGTAAAGCAAATTACATGTTTA 58.909 33.333 2.30 0.00 38.07 2.01
6972 7119 3.282885 GGAACAGGGGCAGAGAAAATAG 58.717 50.000 0.00 0.00 0.00 1.73
7134 7281 4.083484 GGATCTCACAACTTACCGTTTTGG 60.083 45.833 0.00 0.00 46.41 3.28
7166 7313 5.407691 GCTAAGAGTTTTTAAGCAGTACGGT 59.592 40.000 0.00 0.00 0.00 4.83
7169 7316 7.746475 CACATGCTAAGAGTTTTTAAGCAGTAC 59.254 37.037 0.00 0.00 34.23 2.73
7331 7478 6.904954 ACTACAATTATTTTGAAACGTGCG 57.095 33.333 0.00 0.00 0.00 5.34
7351 7498 7.973048 ATACTTGGTCACAATCCTAGAACTA 57.027 36.000 0.00 0.00 35.73 2.24
7592 7767 6.129874 AGTATCTGCAGTACAAGAGGACATA 58.870 40.000 14.67 0.00 0.00 2.29
7607 7782 5.420104 TGAAGTTCATCTCTGAGTATCTGCA 59.580 40.000 0.08 0.00 34.92 4.41
7680 7855 6.892658 AAAATAATAGTGTGCAACTGACCA 57.107 33.333 10.59 0.00 40.26 4.02
7729 7905 1.466167 GAGCGCATGTCACAATGAGTT 59.534 47.619 11.47 0.00 30.82 3.01
7751 7927 0.405585 ACAACAGGGCCTGCATAAGT 59.594 50.000 33.04 20.06 34.37 2.24
7805 7981 1.045911 GGACACCAAGCCACCCAAAA 61.046 55.000 0.00 0.00 0.00 2.44
7942 8118 3.904965 GGGGATAGAAGGGTAAAGGAGAG 59.095 52.174 0.00 0.00 0.00 3.20
8148 8324 0.179179 GTGCATTTCTTCGCTGCTCC 60.179 55.000 0.00 0.00 36.84 4.70
8156 8332 7.168135 CACCAAAACTCTAAAGTGCATTTCTTC 59.832 37.037 0.00 0.00 35.36 2.87
8157 8333 6.980397 CACCAAAACTCTAAAGTGCATTTCTT 59.020 34.615 0.00 0.00 35.36 2.52
8200 8379 6.996509 AGCAACACCTAAAATTTCATGATGT 58.003 32.000 0.00 0.00 0.00 3.06
8236 8415 3.193267 TCAGATGCCACCAACAAATTAGC 59.807 43.478 0.00 0.00 0.00 3.09
8327 8506 8.347035 GTCACTAACAAAATGTACTAAAAGCCA 58.653 33.333 0.00 0.00 0.00 4.75
8370 8549 8.402798 AGATACATAGGTACATCAGAACTCAG 57.597 38.462 0.00 0.00 30.94 3.35
8375 8554 9.688091 GAGGATAGATACATAGGTACATCAGAA 57.312 37.037 0.00 0.00 30.94 3.02
8514 8695 5.762045 AGTAGCACACAATTGAACACAATC 58.238 37.500 13.59 0.00 33.78 2.67
8522 8703 2.027192 GGAGGGAGTAGCACACAATTGA 60.027 50.000 13.59 0.00 0.00 2.57
8523 8704 2.359900 GGAGGGAGTAGCACACAATTG 58.640 52.381 3.24 3.24 0.00 2.32
8524 8705 1.066143 CGGAGGGAGTAGCACACAATT 60.066 52.381 0.00 0.00 0.00 2.32
8525 8706 0.537188 CGGAGGGAGTAGCACACAAT 59.463 55.000 0.00 0.00 0.00 2.71
8526 8707 0.830444 ACGGAGGGAGTAGCACACAA 60.830 55.000 0.00 0.00 0.00 3.33
8527 8708 1.228769 ACGGAGGGAGTAGCACACA 60.229 57.895 0.00 0.00 0.00 3.72
8528 8709 1.511768 GACGGAGGGAGTAGCACAC 59.488 63.158 0.00 0.00 0.00 3.82
8529 8710 1.681327 GGACGGAGGGAGTAGCACA 60.681 63.158 0.00 0.00 0.00 4.57
8530 8711 2.772691 CGGACGGAGGGAGTAGCAC 61.773 68.421 0.00 0.00 0.00 4.40
8531 8712 2.439701 CGGACGGAGGGAGTAGCA 60.440 66.667 0.00 0.00 0.00 3.49
8532 8713 1.318158 TTTCGGACGGAGGGAGTAGC 61.318 60.000 0.00 0.00 0.00 3.58
8533 8714 1.180029 TTTTCGGACGGAGGGAGTAG 58.820 55.000 0.00 0.00 0.00 2.57
8534 8715 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
8535 8716 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
8536 8717 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
8537 8718 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
8538 8719 2.547826 GAAGTATTTTCGGACGGAGGG 58.452 52.381 0.00 0.00 0.00 4.30
8539 8720 2.093869 TGGAAGTATTTTCGGACGGAGG 60.094 50.000 0.00 0.00 0.00 4.30
8540 8721 3.119245 TCTGGAAGTATTTTCGGACGGAG 60.119 47.826 0.00 0.00 33.76 4.63
8541 8722 2.827322 TCTGGAAGTATTTTCGGACGGA 59.173 45.455 0.00 0.00 33.76 4.69
8542 8723 3.241067 TCTGGAAGTATTTTCGGACGG 57.759 47.619 0.00 0.00 33.76 4.79
8543 8724 4.270325 GGAATCTGGAAGTATTTTCGGACG 59.730 45.833 0.00 0.00 33.76 4.79
8544 8725 5.183228 TGGAATCTGGAAGTATTTTCGGAC 58.817 41.667 0.00 0.00 33.76 4.79
8545 8726 5.429681 TGGAATCTGGAAGTATTTTCGGA 57.570 39.130 0.00 0.00 33.76 4.55
8546 8727 6.509418 TTTGGAATCTGGAAGTATTTTCGG 57.491 37.500 0.00 0.00 33.76 4.30
8547 8728 7.761409 TCATTTGGAATCTGGAAGTATTTTCG 58.239 34.615 0.00 0.00 33.76 3.46
8548 8729 9.578439 CTTCATTTGGAATCTGGAAGTATTTTC 57.422 33.333 0.00 0.00 34.32 2.29
8549 8730 9.312904 TCTTCATTTGGAATCTGGAAGTATTTT 57.687 29.630 0.00 0.00 34.32 1.82
8550 8731 8.884124 TCTTCATTTGGAATCTGGAAGTATTT 57.116 30.769 0.00 0.00 34.32 1.40
8551 8732 8.884124 TTCTTCATTTGGAATCTGGAAGTATT 57.116 30.769 0.00 0.00 34.32 1.89
8552 8733 8.884124 TTTCTTCATTTGGAATCTGGAAGTAT 57.116 30.769 0.00 0.00 34.32 2.12
8553 8734 8.742777 CATTTCTTCATTTGGAATCTGGAAGTA 58.257 33.333 0.00 0.00 34.32 2.24
8554 8735 7.310237 CCATTTCTTCATTTGGAATCTGGAAGT 60.310 37.037 0.00 0.00 34.32 3.01
8555 8736 7.039882 CCATTTCTTCATTTGGAATCTGGAAG 58.960 38.462 0.00 0.00 34.32 3.46
8556 8737 6.725369 TCCATTTCTTCATTTGGAATCTGGAA 59.275 34.615 0.00 0.00 35.38 3.53
8557 8738 6.255287 TCCATTTCTTCATTTGGAATCTGGA 58.745 36.000 0.00 0.00 35.38 3.86
8558 8739 6.534475 TCCATTTCTTCATTTGGAATCTGG 57.466 37.500 0.00 0.00 35.38 3.86
8559 8740 8.092687 AGTTTCCATTTCTTCATTTGGAATCTG 58.907 33.333 11.41 0.00 45.14 2.90
8560 8741 8.198807 AGTTTCCATTTCTTCATTTGGAATCT 57.801 30.769 4.24 6.26 45.14 2.40
8561 8742 7.274250 CGAGTTTCCATTTCTTCATTTGGAATC 59.726 37.037 4.24 4.26 45.14 2.52
8562 8743 7.039784 TCGAGTTTCCATTTCTTCATTTGGAAT 60.040 33.333 4.24 0.00 45.14 3.01
8563 8744 6.264292 TCGAGTTTCCATTTCTTCATTTGGAA 59.736 34.615 0.00 0.00 44.38 3.53
8564 8745 5.767665 TCGAGTTTCCATTTCTTCATTTGGA 59.232 36.000 0.00 0.00 36.49 3.53
8565 8746 6.012658 TCGAGTTTCCATTTCTTCATTTGG 57.987 37.500 0.00 0.00 0.00 3.28
8566 8747 7.928908 TTTCGAGTTTCCATTTCTTCATTTG 57.071 32.000 0.00 0.00 0.00 2.32
8567 8748 7.653311 CCTTTTCGAGTTTCCATTTCTTCATTT 59.347 33.333 0.00 0.00 0.00 2.32
8568 8749 7.014230 TCCTTTTCGAGTTTCCATTTCTTCATT 59.986 33.333 0.00 0.00 0.00 2.57
8569 8750 6.490040 TCCTTTTCGAGTTTCCATTTCTTCAT 59.510 34.615 0.00 0.00 0.00 2.57
8570 8751 5.825679 TCCTTTTCGAGTTTCCATTTCTTCA 59.174 36.000 0.00 0.00 0.00 3.02
8571 8752 6.313744 TCCTTTTCGAGTTTCCATTTCTTC 57.686 37.500 0.00 0.00 0.00 2.87
8572 8753 6.071896 GGATCCTTTTCGAGTTTCCATTTCTT 60.072 38.462 3.84 0.00 0.00 2.52
8573 8754 5.416013 GGATCCTTTTCGAGTTTCCATTTCT 59.584 40.000 3.84 0.00 0.00 2.52
8574 8755 5.416013 AGGATCCTTTTCGAGTTTCCATTTC 59.584 40.000 9.02 0.00 30.59 2.17
8575 8756 5.325239 AGGATCCTTTTCGAGTTTCCATTT 58.675 37.500 9.02 0.00 30.59 2.32
8576 8757 4.923415 AGGATCCTTTTCGAGTTTCCATT 58.077 39.130 9.02 0.00 30.59 3.16
8577 8758 4.576330 AGGATCCTTTTCGAGTTTCCAT 57.424 40.909 9.02 0.00 30.59 3.41
8578 8759 4.041691 AGAAGGATCCTTTTCGAGTTTCCA 59.958 41.667 27.68 0.00 36.26 3.53
8579 8760 4.393371 CAGAAGGATCCTTTTCGAGTTTCC 59.607 45.833 27.68 10.99 36.26 3.13
8580 8761 5.238583 TCAGAAGGATCCTTTTCGAGTTTC 58.761 41.667 27.68 11.96 36.26 2.78
8581 8762 5.228945 TCAGAAGGATCCTTTTCGAGTTT 57.771 39.130 27.68 2.05 36.26 2.66
8582 8763 4.891992 TCAGAAGGATCCTTTTCGAGTT 57.108 40.909 27.68 2.88 36.26 3.01
8583 8764 5.188751 AGAATCAGAAGGATCCTTTTCGAGT 59.811 40.000 27.68 21.28 36.26 4.18
8584 8765 5.669477 AGAATCAGAAGGATCCTTTTCGAG 58.331 41.667 27.68 15.31 36.26 4.04
8585 8766 5.683876 AGAATCAGAAGGATCCTTTTCGA 57.316 39.130 27.68 22.24 36.26 3.71
8586 8767 7.849804 TTAAGAATCAGAAGGATCCTTTTCG 57.150 36.000 27.68 18.14 32.29 3.46
8587 8768 9.454859 TCTTTAAGAATCAGAAGGATCCTTTTC 57.545 33.333 27.68 24.14 32.29 2.29
8588 8769 9.813826 TTCTTTAAGAATCAGAAGGATCCTTTT 57.186 29.630 27.68 19.87 32.29 2.27
8589 8770 9.987726 ATTCTTTAAGAATCAGAAGGATCCTTT 57.012 29.630 27.68 11.94 40.75 3.11
8590 8771 9.406113 CATTCTTTAAGAATCAGAAGGATCCTT 57.594 33.333 27.39 27.39 42.67 3.36
8591 8772 8.776119 TCATTCTTTAAGAATCAGAAGGATCCT 58.224 33.333 16.36 9.02 42.67 3.24
8592 8773 8.970859 TCATTCTTTAAGAATCAGAAGGATCC 57.029 34.615 16.36 2.48 42.67 3.36
8593 8774 9.612066 ACTCATTCTTTAAGAATCAGAAGGATC 57.388 33.333 22.10 0.00 42.67 3.36
8594 8775 9.612066 GACTCATTCTTTAAGAATCAGAAGGAT 57.388 33.333 22.10 2.52 42.67 3.24
8595 8776 8.597167 TGACTCATTCTTTAAGAATCAGAAGGA 58.403 33.333 22.10 12.40 42.67 3.36
8596 8777 8.783833 TGACTCATTCTTTAAGAATCAGAAGG 57.216 34.615 22.10 9.21 42.67 3.46
8598 8779 9.948964 TGATGACTCATTCTTTAAGAATCAGAA 57.051 29.630 22.10 11.79 42.67 3.02
8599 8780 9.948964 TTGATGACTCATTCTTTAAGAATCAGA 57.051 29.630 22.10 14.18 42.67 3.27
8605 8786 9.519191 TCCATTTTGATGACTCATTCTTTAAGA 57.481 29.630 0.00 0.00 0.00 2.10
8606 8787 9.565213 GTCCATTTTGATGACTCATTCTTTAAG 57.435 33.333 0.00 0.00 0.00 1.85
8607 8788 9.076781 TGTCCATTTTGATGACTCATTCTTTAA 57.923 29.630 0.00 0.00 0.00 1.52
8608 8789 8.634335 TGTCCATTTTGATGACTCATTCTTTA 57.366 30.769 0.00 0.00 0.00 1.85
8609 8790 7.528996 TGTCCATTTTGATGACTCATTCTTT 57.471 32.000 0.00 0.00 0.00 2.52
8610 8791 7.528996 TTGTCCATTTTGATGACTCATTCTT 57.471 32.000 0.00 0.00 0.00 2.52
8611 8792 7.528996 TTTGTCCATTTTGATGACTCATTCT 57.471 32.000 0.00 0.00 0.00 2.40
8612 8793 8.592105 TTTTTGTCCATTTTGATGACTCATTC 57.408 30.769 0.00 0.00 0.00 2.67
8613 8794 7.658575 CCTTTTTGTCCATTTTGATGACTCATT 59.341 33.333 0.00 0.00 0.00 2.57
8614 8795 7.156673 CCTTTTTGTCCATTTTGATGACTCAT 58.843 34.615 0.00 0.00 0.00 2.90
8615 8796 6.514947 CCTTTTTGTCCATTTTGATGACTCA 58.485 36.000 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.