Multiple sequence alignment - TraesCS3B01G243900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G243900 chr3B 100.000 2396 0 0 1 2396 385195034 385192639 0.000000e+00 4425.0
1 TraesCS3B01G243900 chr3B 94.907 589 30 0 1 589 761332229 761332817 0.000000e+00 922.0
2 TraesCS3B01G243900 chr3B 79.927 274 33 11 1986 2238 28313343 28313071 5.260000e-42 182.0
3 TraesCS3B01G243900 chr3D 93.761 1122 40 6 650 1762 291999333 291998233 0.000000e+00 1657.0
4 TraesCS3B01G243900 chr3D 83.912 547 84 1 45 587 62354477 62355023 9.820000e-144 520.0
5 TraesCS3B01G243900 chr3D 95.541 157 7 0 2240 2396 291987562 291987406 3.950000e-63 252.0
6 TraesCS3B01G243900 chr3D 92.308 130 8 2 1751 1879 291987867 291987739 1.460000e-42 183.0
7 TraesCS3B01G243900 chr3A 93.503 862 33 4 760 1617 384737714 384736872 0.000000e+00 1260.0
8 TraesCS3B01G243900 chr3A 93.351 376 25 0 1606 1981 384735309 384734934 7.480000e-155 556.0
9 TraesCS3B01G243900 chr3A 93.631 157 10 0 2240 2396 384734934 384734778 3.980000e-58 235.0
10 TraesCS3B01G243900 chr5B 93.515 586 38 0 1 586 541078046 541078631 0.000000e+00 872.0
11 TraesCS3B01G243900 chr7B 92.650 585 43 0 1 585 506578943 506579527 0.000000e+00 843.0
12 TraesCS3B01G243900 chrUn 93.659 552 35 0 37 588 262814545 262815096 0.000000e+00 826.0
13 TraesCS3B01G243900 chr2B 87.031 586 76 0 1 586 602748587 602748002 0.000000e+00 662.0
14 TraesCS3B01G243900 chr2B 84.982 273 24 1 1984 2239 603410179 603410451 6.570000e-66 261.0
15 TraesCS3B01G243900 chr7D 85.451 543 79 0 45 587 397606645 397607187 1.240000e-157 566.0
16 TraesCS3B01G243900 chr7D 84.783 276 24 5 1986 2243 17861743 17861468 6.570000e-66 261.0
17 TraesCS3B01G243900 chr7A 83.759 548 86 3 49 594 686688329 686687783 1.270000e-142 516.0
18 TraesCS3B01G243900 chr7A 82.721 272 29 2 1986 2240 731010337 731010067 2.400000e-55 226.0
19 TraesCS3B01G243900 chr7A 87.179 78 10 0 1984 2061 63423495 63423572 3.280000e-14 89.8
20 TraesCS3B01G243900 chr5A 83.488 539 87 2 49 586 559099687 559099150 3.560000e-138 501.0
21 TraesCS3B01G243900 chr5A 81.461 178 15 4 2006 2166 675739435 675739611 1.930000e-26 130.0
22 TraesCS3B01G243900 chr1A 87.209 258 30 1 1985 2239 47815136 47814879 8.380000e-75 291.0
23 TraesCS3B01G243900 chr4B 84.502 271 24 9 1986 2239 66802669 66802938 3.950000e-63 252.0
24 TraesCS3B01G243900 chr4B 84.249 273 25 2 1984 2239 637057514 637057785 1.420000e-62 250.0
25 TraesCS3B01G243900 chr6B 83.883 273 27 3 1986 2241 49344312 49344040 6.620000e-61 244.0
26 TraesCS3B01G243900 chr1B 81.915 282 31 4 1977 2239 576744025 576743745 1.110000e-53 220.0
27 TraesCS3B01G243900 chr4D 88.024 167 19 1 2072 2238 50073838 50074003 1.880000e-46 196.0
28 TraesCS3B01G243900 chr5D 87.500 168 20 1 2072 2239 483999216 483999050 2.430000e-45 193.0
29 TraesCS3B01G243900 chr2D 92.308 78 6 0 2072 2149 180890100 180890177 7.000000e-21 111.0
30 TraesCS3B01G243900 chr2D 92.000 50 4 0 2015 2064 622708584 622708633 1.190000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G243900 chr3B 385192639 385195034 2395 True 4425.000000 4425 100.000 1 2396 1 chr3B.!!$R2 2395
1 TraesCS3B01G243900 chr3B 761332229 761332817 588 False 922.000000 922 94.907 1 589 1 chr3B.!!$F1 588
2 TraesCS3B01G243900 chr3D 291998233 291999333 1100 True 1657.000000 1657 93.761 650 1762 1 chr3D.!!$R1 1112
3 TraesCS3B01G243900 chr3D 62354477 62355023 546 False 520.000000 520 83.912 45 587 1 chr3D.!!$F1 542
4 TraesCS3B01G243900 chr3A 384734778 384737714 2936 True 683.666667 1260 93.495 760 2396 3 chr3A.!!$R1 1636
5 TraesCS3B01G243900 chr5B 541078046 541078631 585 False 872.000000 872 93.515 1 586 1 chr5B.!!$F1 585
6 TraesCS3B01G243900 chr7B 506578943 506579527 584 False 843.000000 843 92.650 1 585 1 chr7B.!!$F1 584
7 TraesCS3B01G243900 chrUn 262814545 262815096 551 False 826.000000 826 93.659 37 588 1 chrUn.!!$F1 551
8 TraesCS3B01G243900 chr2B 602748002 602748587 585 True 662.000000 662 87.031 1 586 1 chr2B.!!$R1 585
9 TraesCS3B01G243900 chr7D 397606645 397607187 542 False 566.000000 566 85.451 45 587 1 chr7D.!!$F1 542
10 TraesCS3B01G243900 chr7A 686687783 686688329 546 True 516.000000 516 83.759 49 594 1 chr7A.!!$R1 545
11 TraesCS3B01G243900 chr5A 559099150 559099687 537 True 501.000000 501 83.488 49 586 1 chr5A.!!$R1 537

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
912 922 0.45826 AAACCAACCACCGAAGCAAC 59.542 50.0 0.0 0.0 0.0 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2204 3792 0.035056 CCCGCCTTTCTCCATCAGTT 60.035 55.0 0.0 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.543653 GCAAGACAAGCGTTTTCATGGT 60.544 45.455 0.00 0.00 0.00 3.55
61 62 3.600388 GCTGGCTGCTTATATACCGAAT 58.400 45.455 9.31 0.00 38.95 3.34
85 86 2.880167 GCCTTGGACTAAACCCAGGAAG 60.880 54.545 8.70 0.00 43.13 3.46
142 143 1.076485 AAGTGATGATGCAGGGGCC 60.076 57.895 0.00 0.00 40.13 5.80
243 244 4.445699 GGAGCTATCCGCCTGTTG 57.554 61.111 0.00 0.00 40.39 3.33
253 254 1.971695 CGCCTGTTGGGAGGGTTTC 60.972 63.158 0.00 0.00 37.23 2.78
263 264 2.573462 TGGGAGGGTTTCTCTTCATCAG 59.427 50.000 0.00 0.00 42.10 2.90
415 416 8.630037 TCTTCGCATCAATCTTGTATTACTCTA 58.370 33.333 0.00 0.00 0.00 2.43
525 530 2.803492 CGCCTGAGGTATTGGAGTTAGC 60.803 54.545 0.00 0.00 0.00 3.09
534 539 3.922171 ATTGGAGTTAGCTCAGGAAGG 57.078 47.619 8.96 0.00 43.37 3.46
638 643 4.796038 AAAAATCTGAGCCAGTTCCATG 57.204 40.909 2.68 0.00 32.61 3.66
639 644 3.726557 AAATCTGAGCCAGTTCCATGA 57.273 42.857 0.00 0.00 32.61 3.07
640 645 3.947612 AATCTGAGCCAGTTCCATGAT 57.052 42.857 0.00 0.00 32.61 2.45
641 646 3.947612 ATCTGAGCCAGTTCCATGATT 57.052 42.857 0.00 0.00 32.61 2.57
642 647 5.378230 AATCTGAGCCAGTTCCATGATTA 57.622 39.130 0.00 0.00 32.61 1.75
643 648 4.412796 TCTGAGCCAGTTCCATGATTAG 57.587 45.455 0.00 0.00 32.61 1.73
644 649 3.776969 TCTGAGCCAGTTCCATGATTAGT 59.223 43.478 0.00 0.00 32.61 2.24
645 650 3.875727 CTGAGCCAGTTCCATGATTAGTG 59.124 47.826 0.00 0.00 0.00 2.74
646 651 3.209410 GAGCCAGTTCCATGATTAGTGG 58.791 50.000 0.00 2.81 38.11 4.00
648 653 2.301346 CCAGTTCCATGATTAGTGGCC 58.699 52.381 0.00 0.00 36.66 5.36
658 663 0.544697 ATTAGTGGCCCCAGTTACGG 59.455 55.000 0.00 0.00 0.00 4.02
678 687 3.495670 GCCATTGGCGTGTTGTAATAA 57.504 42.857 12.82 0.00 39.62 1.40
685 694 5.049398 TGGCGTGTTGTAATAACCATTTC 57.951 39.130 0.00 0.00 0.00 2.17
686 695 4.092816 GGCGTGTTGTAATAACCATTTCG 58.907 43.478 0.00 0.00 0.00 3.46
715 724 1.419922 CCTGATTTTGCGTCGACGG 59.580 57.895 36.13 19.71 40.23 4.79
725 734 2.426183 CGTCGACGGAACAAGAGCG 61.426 63.158 29.70 0.00 35.37 5.03
739 748 0.681733 AGAGCGGCAAGAAACAGAGA 59.318 50.000 1.45 0.00 0.00 3.10
779 789 2.941453 TCCTCGATTCTTCCACGAAG 57.059 50.000 0.00 0.00 40.65 3.79
882 892 4.221422 GCGCTAGCGACCCATCCA 62.221 66.667 39.52 0.00 42.83 3.41
883 893 2.279517 CGCTAGCGACCCATCCAC 60.280 66.667 32.98 0.00 42.83 4.02
884 894 2.786495 CGCTAGCGACCCATCCACT 61.786 63.158 32.98 0.00 42.83 4.00
912 922 0.458260 AAACCAACCACCGAAGCAAC 59.542 50.000 0.00 0.00 0.00 4.17
924 934 1.666023 CGAAGCAACACTCGCTCTACA 60.666 52.381 0.00 0.00 39.29 2.74
964 974 1.207593 GTGCTTGCGTTGCGATCTT 59.792 52.632 0.00 0.00 0.00 2.40
980 990 2.229675 TCTTATCTCGCGACCTACGA 57.770 50.000 3.71 0.00 45.77 3.43
1004 1014 3.993614 TAGGCGTGGCTGCAATGGG 62.994 63.158 6.15 0.00 36.28 4.00
1073 1083 3.148279 GCTCCTCGTGGGATCGGT 61.148 66.667 3.23 0.00 44.15 4.69
1461 1471 4.652822 AGGCCGACAAAAACTTTCTAGAT 58.347 39.130 0.00 0.00 0.00 1.98
1484 1494 8.122952 AGATTTTATTTAGAAGTTGATTCCGCG 58.877 33.333 0.00 0.00 38.84 6.46
1503 1513 1.609580 CGAAAGGACGGGATCAACCAA 60.610 52.381 0.00 0.00 41.20 3.67
1622 3210 6.750148 ACCGAATTTGTTAATGCCTTGTTAA 58.250 32.000 0.00 0.00 0.00 2.01
1623 3211 7.382898 ACCGAATTTGTTAATGCCTTGTTAAT 58.617 30.769 0.00 0.00 0.00 1.40
1660 3248 6.069673 TCCACCATATAAAGCAAGAGAAGGAA 60.070 38.462 0.00 0.00 0.00 3.36
1763 3351 1.227342 TGCAAACGCTTCGCTCATCA 61.227 50.000 0.00 0.00 0.00 3.07
1793 3381 5.527214 TCAATTCGATAATGACATGTGGGAC 59.473 40.000 1.15 0.00 0.00 4.46
1810 3398 7.610580 TGTGGGACTTATGTGTGATATCATA 57.389 36.000 9.02 2.88 0.00 2.15
1848 3436 4.142773 GCCATTTTGGAATCATTTGCACTG 60.143 41.667 0.00 0.00 40.96 3.66
1851 3439 5.534207 TTTTGGAATCATTTGCACTGTCT 57.466 34.783 0.00 0.00 32.39 3.41
1852 3440 4.771590 TTGGAATCATTTGCACTGTCTC 57.228 40.909 0.00 0.00 32.39 3.36
1855 3443 3.932710 GGAATCATTTGCACTGTCTCGTA 59.067 43.478 0.00 0.00 0.00 3.43
1880 3468 1.820519 ACGTTAAGGCGATCCACTGTA 59.179 47.619 0.00 0.00 35.59 2.74
1881 3469 2.429610 ACGTTAAGGCGATCCACTGTAT 59.570 45.455 0.00 0.00 35.59 2.29
1890 3478 3.729716 GCGATCCACTGTATTCGTACTTC 59.270 47.826 0.00 0.00 34.24 3.01
1980 3568 2.037121 TGTCATGGTATGTCATAGGGCG 59.963 50.000 0.00 0.00 0.00 6.13
1981 3569 2.037251 GTCATGGTATGTCATAGGGCGT 59.963 50.000 0.00 0.00 0.00 5.68
1982 3570 2.703536 TCATGGTATGTCATAGGGCGTT 59.296 45.455 0.00 0.00 0.00 4.84
1983 3571 2.902705 TGGTATGTCATAGGGCGTTC 57.097 50.000 0.00 0.00 0.00 3.95
1984 3572 2.112190 TGGTATGTCATAGGGCGTTCA 58.888 47.619 0.00 0.00 0.00 3.18
1985 3573 2.703536 TGGTATGTCATAGGGCGTTCAT 59.296 45.455 0.00 0.00 0.00 2.57
1986 3574 3.898741 TGGTATGTCATAGGGCGTTCATA 59.101 43.478 0.00 0.00 0.00 2.15
1987 3575 4.530553 TGGTATGTCATAGGGCGTTCATAT 59.469 41.667 0.00 0.00 0.00 1.78
1988 3576 5.012664 TGGTATGTCATAGGGCGTTCATATT 59.987 40.000 0.00 0.00 0.00 1.28
1989 3577 5.351465 GGTATGTCATAGGGCGTTCATATTG 59.649 44.000 0.00 0.00 0.00 1.90
1990 3578 4.681074 TGTCATAGGGCGTTCATATTGA 57.319 40.909 0.00 0.00 0.00 2.57
1991 3579 5.029807 TGTCATAGGGCGTTCATATTGAA 57.970 39.130 0.00 0.00 33.32 2.69
1992 3580 5.620206 TGTCATAGGGCGTTCATATTGAAT 58.380 37.500 0.00 0.00 38.79 2.57
1993 3581 6.061441 TGTCATAGGGCGTTCATATTGAATT 58.939 36.000 0.00 0.00 38.79 2.17
1994 3582 6.204688 TGTCATAGGGCGTTCATATTGAATTC 59.795 38.462 0.00 0.00 38.79 2.17
1995 3583 6.204688 GTCATAGGGCGTTCATATTGAATTCA 59.795 38.462 3.38 3.38 38.79 2.57
1996 3584 6.942005 TCATAGGGCGTTCATATTGAATTCAT 59.058 34.615 9.40 2.50 38.79 2.57
1997 3585 7.448161 TCATAGGGCGTTCATATTGAATTCATT 59.552 33.333 9.40 8.53 38.79 2.57
1998 3586 6.076981 AGGGCGTTCATATTGAATTCATTC 57.923 37.500 9.40 0.00 38.79 2.67
1999 3587 5.829924 AGGGCGTTCATATTGAATTCATTCT 59.170 36.000 9.40 0.08 38.79 2.40
2000 3588 6.016777 AGGGCGTTCATATTGAATTCATTCTC 60.017 38.462 9.40 0.00 38.79 2.87
2001 3589 6.145535 GGCGTTCATATTGAATTCATTCTCC 58.854 40.000 9.40 0.00 38.79 3.71
2002 3590 6.238731 GGCGTTCATATTGAATTCATTCTCCA 60.239 38.462 9.40 0.00 38.79 3.86
2003 3591 7.195646 GCGTTCATATTGAATTCATTCTCCAA 58.804 34.615 9.40 0.00 38.79 3.53
2004 3592 7.701924 GCGTTCATATTGAATTCATTCTCCAAA 59.298 33.333 9.40 0.00 38.79 3.28
2005 3593 9.013490 CGTTCATATTGAATTCATTCTCCAAAC 57.987 33.333 9.40 7.55 38.79 2.93
2006 3594 9.859427 GTTCATATTGAATTCATTCTCCAAACA 57.141 29.630 9.40 0.00 38.79 2.83
2008 3596 9.859427 TCATATTGAATTCATTCTCCAAACAAC 57.141 29.630 9.40 0.00 37.67 3.32
2009 3597 9.865321 CATATTGAATTCATTCTCCAAACAACT 57.135 29.630 9.40 0.00 37.67 3.16
2011 3599 6.957920 TGAATTCATTCTCCAAACAACTCA 57.042 33.333 3.38 0.00 37.67 3.41
2012 3600 7.528996 TGAATTCATTCTCCAAACAACTCAT 57.471 32.000 3.38 0.00 37.67 2.90
2013 3601 7.596494 TGAATTCATTCTCCAAACAACTCATC 58.404 34.615 3.38 0.00 37.67 2.92
2014 3602 5.964958 TTCATTCTCCAAACAACTCATCC 57.035 39.130 0.00 0.00 0.00 3.51
2015 3603 4.984295 TCATTCTCCAAACAACTCATCCA 58.016 39.130 0.00 0.00 0.00 3.41
2016 3604 5.384336 TCATTCTCCAAACAACTCATCCAA 58.616 37.500 0.00 0.00 0.00 3.53
2017 3605 5.832595 TCATTCTCCAAACAACTCATCCAAA 59.167 36.000 0.00 0.00 0.00 3.28
2018 3606 6.323482 TCATTCTCCAAACAACTCATCCAAAA 59.677 34.615 0.00 0.00 0.00 2.44
2019 3607 6.537453 TTCTCCAAACAACTCATCCAAAAA 57.463 33.333 0.00 0.00 0.00 1.94
2020 3608 6.729690 TCTCCAAACAACTCATCCAAAAAT 57.270 33.333 0.00 0.00 0.00 1.82
2021 3609 6.748132 TCTCCAAACAACTCATCCAAAAATC 58.252 36.000 0.00 0.00 0.00 2.17
2022 3610 5.852827 TCCAAACAACTCATCCAAAAATCC 58.147 37.500 0.00 0.00 0.00 3.01
2023 3611 4.685628 CCAAACAACTCATCCAAAAATCCG 59.314 41.667 0.00 0.00 0.00 4.18
2024 3612 5.508825 CCAAACAACTCATCCAAAAATCCGA 60.509 40.000 0.00 0.00 0.00 4.55
2025 3613 5.782893 AACAACTCATCCAAAAATCCGAA 57.217 34.783 0.00 0.00 0.00 4.30
2026 3614 5.121221 ACAACTCATCCAAAAATCCGAAC 57.879 39.130 0.00 0.00 0.00 3.95
2027 3615 4.158384 CAACTCATCCAAAAATCCGAACG 58.842 43.478 0.00 0.00 0.00 3.95
2028 3616 2.747446 ACTCATCCAAAAATCCGAACGG 59.253 45.455 6.94 6.94 0.00 4.44
2037 3625 4.445832 TCCGAACGGATGGAAGGA 57.554 55.556 12.04 0.00 39.76 3.36
2038 3626 2.199117 TCCGAACGGATGGAAGGAG 58.801 57.895 12.04 0.00 39.76 3.69
2039 3627 1.144057 CCGAACGGATGGAAGGAGG 59.856 63.158 7.53 0.00 37.50 4.30
2040 3628 1.521681 CGAACGGATGGAAGGAGGC 60.522 63.158 0.00 0.00 0.00 4.70
2041 3629 1.521681 GAACGGATGGAAGGAGGCG 60.522 63.158 0.00 0.00 0.00 5.52
2042 3630 2.925162 GAACGGATGGAAGGAGGCGG 62.925 65.000 0.00 0.00 0.00 6.13
2043 3631 4.241555 CGGATGGAAGGAGGCGGG 62.242 72.222 0.00 0.00 0.00 6.13
2044 3632 4.570874 GGATGGAAGGAGGCGGGC 62.571 72.222 0.00 0.00 0.00 6.13
2045 3633 3.797353 GATGGAAGGAGGCGGGCA 61.797 66.667 3.78 0.00 0.00 5.36
2046 3634 3.338250 ATGGAAGGAGGCGGGCAA 61.338 61.111 3.78 0.00 0.00 4.52
2047 3635 2.631012 GATGGAAGGAGGCGGGCAAT 62.631 60.000 3.78 0.00 0.00 3.56
2048 3636 1.352622 ATGGAAGGAGGCGGGCAATA 61.353 55.000 3.78 0.00 0.00 1.90
2049 3637 1.352622 TGGAAGGAGGCGGGCAATAT 61.353 55.000 3.78 0.00 0.00 1.28
2050 3638 0.690762 GGAAGGAGGCGGGCAATATA 59.309 55.000 3.78 0.00 0.00 0.86
2051 3639 1.282157 GGAAGGAGGCGGGCAATATAT 59.718 52.381 3.78 0.00 0.00 0.86
2052 3640 2.290960 GGAAGGAGGCGGGCAATATATT 60.291 50.000 3.78 0.00 0.00 1.28
2053 3641 3.421844 GAAGGAGGCGGGCAATATATTT 58.578 45.455 3.78 0.00 0.00 1.40
2054 3642 3.073274 AGGAGGCGGGCAATATATTTC 57.927 47.619 3.78 0.00 0.00 2.17
2055 3643 2.375174 AGGAGGCGGGCAATATATTTCA 59.625 45.455 3.78 0.00 0.00 2.69
2056 3644 3.153919 GGAGGCGGGCAATATATTTCAA 58.846 45.455 3.78 0.00 0.00 2.69
2057 3645 3.763897 GGAGGCGGGCAATATATTTCAAT 59.236 43.478 3.78 0.00 0.00 2.57
2058 3646 4.947388 GGAGGCGGGCAATATATTTCAATA 59.053 41.667 3.78 0.00 0.00 1.90
2059 3647 5.163652 GGAGGCGGGCAATATATTTCAATAC 60.164 44.000 3.78 0.00 0.00 1.89
2060 3648 5.570320 AGGCGGGCAATATATTTCAATACT 58.430 37.500 3.78 0.00 0.00 2.12
2061 3649 5.648092 AGGCGGGCAATATATTTCAATACTC 59.352 40.000 3.78 0.00 0.00 2.59
2062 3650 5.163652 GGCGGGCAATATATTTCAATACTCC 60.164 44.000 0.00 0.00 0.00 3.85
2063 3651 5.163652 GCGGGCAATATATTTCAATACTCCC 60.164 44.000 0.00 0.00 0.00 4.30
2064 3652 5.357032 CGGGCAATATATTTCAATACTCCCC 59.643 44.000 0.00 0.00 0.00 4.81
2065 3653 5.656859 GGGCAATATATTTCAATACTCCCCC 59.343 44.000 0.00 0.00 0.00 5.40
2066 3654 6.494059 GGCAATATATTTCAATACTCCCCCT 58.506 40.000 0.00 0.00 0.00 4.79
2067 3655 6.603599 GGCAATATATTTCAATACTCCCCCTC 59.396 42.308 0.00 0.00 0.00 4.30
2068 3656 7.175104 GCAATATATTTCAATACTCCCCCTCA 58.825 38.462 0.00 0.00 0.00 3.86
2069 3657 7.121315 GCAATATATTTCAATACTCCCCCTCAC 59.879 40.741 0.00 0.00 0.00 3.51
2070 3658 3.560636 ATTTCAATACTCCCCCTCACG 57.439 47.619 0.00 0.00 0.00 4.35
2071 3659 0.539986 TTCAATACTCCCCCTCACGC 59.460 55.000 0.00 0.00 0.00 5.34
2072 3660 0.325296 TCAATACTCCCCCTCACGCT 60.325 55.000 0.00 0.00 0.00 5.07
2073 3661 0.541863 CAATACTCCCCCTCACGCTT 59.458 55.000 0.00 0.00 0.00 4.68
2074 3662 1.760613 CAATACTCCCCCTCACGCTTA 59.239 52.381 0.00 0.00 0.00 3.09
2075 3663 1.705873 ATACTCCCCCTCACGCTTAG 58.294 55.000 0.00 0.00 0.00 2.18
2076 3664 0.627451 TACTCCCCCTCACGCTTAGA 59.373 55.000 0.00 0.00 0.00 2.10
2077 3665 0.971447 ACTCCCCCTCACGCTTAGAC 60.971 60.000 0.00 0.00 0.00 2.59
2078 3666 2.005960 CTCCCCCTCACGCTTAGACG 62.006 65.000 0.00 0.00 39.50 4.18
2086 3674 1.432251 ACGCTTAGACGTGGGATCG 59.568 57.895 0.00 0.00 46.28 3.69
2087 3675 1.028330 ACGCTTAGACGTGGGATCGA 61.028 55.000 0.00 0.00 46.28 3.59
2088 3676 0.311165 CGCTTAGACGTGGGATCGAT 59.689 55.000 0.00 0.00 34.70 3.59
2089 3677 1.772182 GCTTAGACGTGGGATCGATG 58.228 55.000 0.54 0.00 34.70 3.84
2090 3678 1.067212 GCTTAGACGTGGGATCGATGT 59.933 52.381 0.54 0.00 34.70 3.06
2091 3679 2.292569 GCTTAGACGTGGGATCGATGTA 59.707 50.000 0.54 0.00 34.70 2.29
2092 3680 3.609644 GCTTAGACGTGGGATCGATGTAG 60.610 52.174 0.54 0.00 34.70 2.74
2093 3681 2.343484 AGACGTGGGATCGATGTAGA 57.657 50.000 0.54 0.00 34.70 2.59
2094 3682 2.865079 AGACGTGGGATCGATGTAGAT 58.135 47.619 0.54 0.00 34.70 1.98
2095 3683 2.814919 AGACGTGGGATCGATGTAGATC 59.185 50.000 0.54 0.00 44.62 2.75
2105 3693 2.922384 CGATGTAGATCGCAGAATCGT 58.078 47.619 9.52 0.00 44.75 3.73
2106 3694 3.300857 CGATGTAGATCGCAGAATCGTT 58.699 45.455 9.52 0.00 44.75 3.85
2107 3695 3.731216 CGATGTAGATCGCAGAATCGTTT 59.269 43.478 9.52 0.00 44.75 3.60
2108 3696 4.207224 CGATGTAGATCGCAGAATCGTTTT 59.793 41.667 9.52 0.00 44.75 2.43
2109 3697 5.276395 CGATGTAGATCGCAGAATCGTTTTT 60.276 40.000 9.52 0.00 44.75 1.94
2110 3698 6.075046 CGATGTAGATCGCAGAATCGTTTTTA 60.075 38.462 9.52 0.00 44.75 1.52
2111 3699 7.358435 CGATGTAGATCGCAGAATCGTTTTTAT 60.358 37.037 9.52 0.00 44.75 1.40
2112 3700 7.534085 TGTAGATCGCAGAATCGTTTTTATT 57.466 32.000 0.00 0.00 43.58 1.40
2113 3701 7.970384 TGTAGATCGCAGAATCGTTTTTATTT 58.030 30.769 0.00 0.00 43.58 1.40
2114 3702 9.089601 TGTAGATCGCAGAATCGTTTTTATTTA 57.910 29.630 0.00 0.00 43.58 1.40
2115 3703 9.910511 GTAGATCGCAGAATCGTTTTTATTTAA 57.089 29.630 0.00 0.00 43.58 1.52
2120 3708 9.697250 TCGCAGAATCGTTTTTATTTAATACTG 57.303 29.630 0.00 0.00 0.00 2.74
2121 3709 8.461398 CGCAGAATCGTTTTTATTTAATACTGC 58.539 33.333 0.00 0.00 40.27 4.40
2122 3710 8.461398 GCAGAATCGTTTTTATTTAATACTGCG 58.539 33.333 0.00 0.00 35.93 5.18
2123 3711 9.485591 CAGAATCGTTTTTATTTAATACTGCGT 57.514 29.630 0.00 0.00 0.00 5.24
2126 3714 7.481768 TCGTTTTTATTTAATACTGCGTTGC 57.518 32.000 0.00 0.00 0.00 4.17
2127 3715 6.523893 TCGTTTTTATTTAATACTGCGTTGCC 59.476 34.615 0.00 0.00 0.00 4.52
2128 3716 6.305877 CGTTTTTATTTAATACTGCGTTGCCA 59.694 34.615 0.00 0.00 0.00 4.92
2129 3717 7.460896 CGTTTTTATTTAATACTGCGTTGCCAG 60.461 37.037 0.00 0.00 38.78 4.85
2130 3718 5.493133 TTATTTAATACTGCGTTGCCAGG 57.507 39.130 0.00 0.00 37.16 4.45
2131 3719 1.745232 TTAATACTGCGTTGCCAGGG 58.255 50.000 0.00 0.00 37.16 4.45
2132 3720 0.616371 TAATACTGCGTTGCCAGGGT 59.384 50.000 0.00 0.00 37.16 4.34
2133 3721 0.676782 AATACTGCGTTGCCAGGGTC 60.677 55.000 0.00 0.00 37.16 4.46
2134 3722 1.553690 ATACTGCGTTGCCAGGGTCT 61.554 55.000 0.00 0.00 37.16 3.85
2135 3723 1.764571 TACTGCGTTGCCAGGGTCTT 61.765 55.000 0.00 0.00 37.16 3.01
2136 3724 2.594303 TGCGTTGCCAGGGTCTTG 60.594 61.111 0.00 0.00 0.00 3.02
2137 3725 2.281484 GCGTTGCCAGGGTCTTGA 60.281 61.111 0.00 0.00 0.00 3.02
2138 3726 1.896660 GCGTTGCCAGGGTCTTGAA 60.897 57.895 0.00 0.00 0.00 2.69
2139 3727 1.949257 CGTTGCCAGGGTCTTGAAC 59.051 57.895 0.00 0.00 0.00 3.18
2140 3728 0.535102 CGTTGCCAGGGTCTTGAACT 60.535 55.000 0.00 0.00 0.00 3.01
2141 3729 1.239347 GTTGCCAGGGTCTTGAACTC 58.761 55.000 0.00 0.00 0.00 3.01
2142 3730 0.843309 TTGCCAGGGTCTTGAACTCA 59.157 50.000 0.00 0.00 0.00 3.41
2143 3731 0.843309 TGCCAGGGTCTTGAACTCAA 59.157 50.000 0.00 0.00 0.00 3.02
2154 3742 0.687354 TGAACTCAAGACCTCCTGGC 59.313 55.000 0.00 0.00 36.63 4.85
2155 3743 0.980423 GAACTCAAGACCTCCTGGCT 59.020 55.000 0.00 0.00 36.63 4.75
2156 3744 0.980423 AACTCAAGACCTCCTGGCTC 59.020 55.000 0.00 0.00 36.63 4.70
2157 3745 0.116143 ACTCAAGACCTCCTGGCTCT 59.884 55.000 0.00 0.00 36.63 4.09
2158 3746 1.359474 ACTCAAGACCTCCTGGCTCTA 59.641 52.381 0.00 0.00 36.63 2.43
2159 3747 2.225394 ACTCAAGACCTCCTGGCTCTAA 60.225 50.000 0.00 0.00 36.63 2.10
2160 3748 3.037549 CTCAAGACCTCCTGGCTCTAAT 58.962 50.000 0.00 0.00 36.63 1.73
2161 3749 4.219115 CTCAAGACCTCCTGGCTCTAATA 58.781 47.826 0.00 0.00 36.63 0.98
2162 3750 3.961408 TCAAGACCTCCTGGCTCTAATAC 59.039 47.826 0.00 0.00 36.63 1.89
2163 3751 2.965562 AGACCTCCTGGCTCTAATACC 58.034 52.381 0.00 0.00 36.63 2.73
2164 3752 2.247635 AGACCTCCTGGCTCTAATACCA 59.752 50.000 0.00 0.00 36.63 3.25
2165 3753 3.116551 AGACCTCCTGGCTCTAATACCAT 60.117 47.826 0.00 0.00 34.82 3.55
2166 3754 4.108124 AGACCTCCTGGCTCTAATACCATA 59.892 45.833 0.00 0.00 34.82 2.74
2167 3755 5.026790 GACCTCCTGGCTCTAATACCATAT 58.973 45.833 0.00 0.00 34.82 1.78
2168 3756 5.415961 ACCTCCTGGCTCTAATACCATATT 58.584 41.667 0.00 0.00 34.82 1.28
2169 3757 5.249393 ACCTCCTGGCTCTAATACCATATTG 59.751 44.000 0.00 0.00 34.82 1.90
2170 3758 5.485353 CCTCCTGGCTCTAATACCATATTGA 59.515 44.000 0.00 0.00 34.82 2.57
2171 3759 6.013379 CCTCCTGGCTCTAATACCATATTGAA 60.013 42.308 0.00 0.00 34.82 2.69
2172 3760 7.311549 CCTCCTGGCTCTAATACCATATTGAAT 60.312 40.741 0.00 0.00 34.82 2.57
2173 3761 7.988937 TCCTGGCTCTAATACCATATTGAATT 58.011 34.615 0.00 0.00 34.82 2.17
2174 3762 8.448008 TCCTGGCTCTAATACCATATTGAATTT 58.552 33.333 0.00 0.00 34.82 1.82
2175 3763 9.739276 CCTGGCTCTAATACCATATTGAATTTA 57.261 33.333 0.00 0.00 34.82 1.40
2185 3773 7.790823 ACCATATTGAATTTATTTTGCAGCC 57.209 32.000 0.00 0.00 0.00 4.85
2186 3774 7.337167 ACCATATTGAATTTATTTTGCAGCCA 58.663 30.769 0.00 0.00 0.00 4.75
2187 3775 7.828223 ACCATATTGAATTTATTTTGCAGCCAA 59.172 29.630 0.00 0.00 0.00 4.52
2188 3776 8.124199 CCATATTGAATTTATTTTGCAGCCAAC 58.876 33.333 0.00 0.00 0.00 3.77
2189 3777 8.885722 CATATTGAATTTATTTTGCAGCCAACT 58.114 29.630 0.00 0.00 0.00 3.16
2190 3778 6.783892 TTGAATTTATTTTGCAGCCAACTC 57.216 33.333 0.00 0.00 0.00 3.01
2191 3779 5.851720 TGAATTTATTTTGCAGCCAACTCA 58.148 33.333 0.00 0.00 0.00 3.41
2192 3780 6.465948 TGAATTTATTTTGCAGCCAACTCAT 58.534 32.000 0.00 0.00 0.00 2.90
2193 3781 6.591062 TGAATTTATTTTGCAGCCAACTCATC 59.409 34.615 0.00 0.00 0.00 2.92
2194 3782 4.454728 TTATTTTGCAGCCAACTCATCC 57.545 40.909 0.00 0.00 0.00 3.51
2195 3783 1.702182 TTTTGCAGCCAACTCATCCA 58.298 45.000 0.00 0.00 0.00 3.41
2196 3784 1.702182 TTTGCAGCCAACTCATCCAA 58.298 45.000 0.00 0.00 0.00 3.53
2197 3785 1.702182 TTGCAGCCAACTCATCCAAA 58.298 45.000 0.00 0.00 0.00 3.28
2198 3786 1.702182 TGCAGCCAACTCATCCAAAA 58.298 45.000 0.00 0.00 0.00 2.44
2199 3787 2.037901 TGCAGCCAACTCATCCAAAAA 58.962 42.857 0.00 0.00 0.00 1.94
2200 3788 2.633967 TGCAGCCAACTCATCCAAAAAT 59.366 40.909 0.00 0.00 0.00 1.82
2201 3789 3.071312 TGCAGCCAACTCATCCAAAAATT 59.929 39.130 0.00 0.00 0.00 1.82
2202 3790 3.681417 GCAGCCAACTCATCCAAAAATTC 59.319 43.478 0.00 0.00 0.00 2.17
2203 3791 3.922240 CAGCCAACTCATCCAAAAATTCG 59.078 43.478 0.00 0.00 0.00 3.34
2204 3792 3.826157 AGCCAACTCATCCAAAAATTCGA 59.174 39.130 0.00 0.00 0.00 3.71
2205 3793 4.280677 AGCCAACTCATCCAAAAATTCGAA 59.719 37.500 0.00 0.00 0.00 3.71
2206 3794 4.385748 GCCAACTCATCCAAAAATTCGAAC 59.614 41.667 0.00 0.00 0.00 3.95
2207 3795 5.772521 CCAACTCATCCAAAAATTCGAACT 58.227 37.500 0.00 0.00 0.00 3.01
2208 3796 5.630680 CCAACTCATCCAAAAATTCGAACTG 59.369 40.000 0.00 0.00 0.00 3.16
2209 3797 6.437928 CAACTCATCCAAAAATTCGAACTGA 58.562 36.000 0.00 0.00 0.00 3.41
2210 3798 6.824305 ACTCATCCAAAAATTCGAACTGAT 57.176 33.333 0.00 0.00 0.00 2.90
2211 3799 6.615088 ACTCATCCAAAAATTCGAACTGATG 58.385 36.000 0.00 6.98 0.00 3.07
2212 3800 5.953183 TCATCCAAAAATTCGAACTGATGG 58.047 37.500 0.00 7.75 31.58 3.51
2213 3801 5.709631 TCATCCAAAAATTCGAACTGATGGA 59.290 36.000 20.32 20.32 35.72 3.41
2214 3802 5.627499 TCCAAAAATTCGAACTGATGGAG 57.373 39.130 16.34 0.00 29.48 3.86
2215 3803 5.312895 TCCAAAAATTCGAACTGATGGAGA 58.687 37.500 16.34 1.55 29.48 3.71
2216 3804 5.767665 TCCAAAAATTCGAACTGATGGAGAA 59.232 36.000 16.34 1.00 29.48 2.87
2217 3805 6.264292 TCCAAAAATTCGAACTGATGGAGAAA 59.736 34.615 16.34 0.72 29.48 2.52
2218 3806 6.583806 CCAAAAATTCGAACTGATGGAGAAAG 59.416 38.462 13.73 0.00 0.00 2.62
2219 3807 5.886960 AAATTCGAACTGATGGAGAAAGG 57.113 39.130 0.00 0.00 0.00 3.11
2220 3808 2.386661 TCGAACTGATGGAGAAAGGC 57.613 50.000 0.00 0.00 0.00 4.35
2221 3809 1.002366 CGAACTGATGGAGAAAGGCG 58.998 55.000 0.00 0.00 0.00 5.52
2222 3810 1.373570 GAACTGATGGAGAAAGGCGG 58.626 55.000 0.00 0.00 0.00 6.13
2223 3811 0.035056 AACTGATGGAGAAAGGCGGG 60.035 55.000 0.00 0.00 0.00 6.13
2224 3812 1.821332 CTGATGGAGAAAGGCGGGC 60.821 63.158 0.00 0.00 0.00 6.13
2225 3813 2.272146 GATGGAGAAAGGCGGGCA 59.728 61.111 3.78 0.00 0.00 5.36
2226 3814 1.378514 GATGGAGAAAGGCGGGCAA 60.379 57.895 3.78 0.00 0.00 4.52
2227 3815 0.753111 GATGGAGAAAGGCGGGCAAT 60.753 55.000 3.78 0.00 0.00 3.56
2228 3816 0.550914 ATGGAGAAAGGCGGGCAATA 59.449 50.000 3.78 0.00 0.00 1.90
2229 3817 0.550914 TGGAGAAAGGCGGGCAATAT 59.449 50.000 3.78 0.00 0.00 1.28
2230 3818 1.771854 TGGAGAAAGGCGGGCAATATA 59.228 47.619 3.78 0.00 0.00 0.86
2231 3819 2.375174 TGGAGAAAGGCGGGCAATATAT 59.625 45.455 3.78 0.00 0.00 0.86
2232 3820 3.181434 TGGAGAAAGGCGGGCAATATATT 60.181 43.478 3.78 0.00 0.00 1.28
2233 3821 3.826729 GGAGAAAGGCGGGCAATATATTT 59.173 43.478 3.78 0.00 0.00 1.40
2234 3822 4.082733 GGAGAAAGGCGGGCAATATATTTC 60.083 45.833 3.78 4.09 0.00 2.17
2235 3823 4.469657 AGAAAGGCGGGCAATATATTTCA 58.530 39.130 3.78 0.00 0.00 2.69
2236 3824 4.892934 AGAAAGGCGGGCAATATATTTCAA 59.107 37.500 3.78 0.00 0.00 2.69
2237 3825 4.584327 AAGGCGGGCAATATATTTCAAC 57.416 40.909 3.78 0.00 0.00 3.18
2238 3826 3.561143 AGGCGGGCAATATATTTCAACA 58.439 40.909 3.78 0.00 0.00 3.33
2243 3831 4.935352 GGCAATATATTTCAACAGCCCA 57.065 40.909 9.92 0.00 34.94 5.36
2272 3860 4.924305 ACATATGTGATTGGCCAATGAC 57.076 40.909 33.46 33.46 35.83 3.06
2288 3876 5.105064 GCCAATGACACCCTACTACTCTTTA 60.105 44.000 0.00 0.00 0.00 1.85
2294 3882 4.081807 ACACCCTACTACTCTTTAAAGCCG 60.082 45.833 10.51 6.57 0.00 5.52
2317 3905 4.098914 TGGTCATCAAGCAAGTTAGGTT 57.901 40.909 0.00 0.00 30.91 3.50
2318 3906 4.469657 TGGTCATCAAGCAAGTTAGGTTT 58.530 39.130 0.00 0.00 30.91 3.27
2351 3939 8.173542 TCTTAACAAATTTGTAGAAGGAACCC 57.826 34.615 28.44 0.00 41.31 4.11
2371 3959 3.068590 CCCACCAGAACATTAATCCATGC 59.931 47.826 0.00 0.00 0.00 4.06
2374 3962 3.382546 ACCAGAACATTAATCCATGCAGC 59.617 43.478 0.00 0.00 0.00 5.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 1.515954 GCCAGCTGCTTCGTAGGTA 59.484 57.895 8.66 0.00 36.87 3.08
61 62 2.241176 CCTGGGTTTAGTCCAAGGCATA 59.759 50.000 0.00 0.00 41.27 3.14
85 86 2.956333 AGTGTTTAGTTTGCTCCAACCC 59.044 45.455 0.00 0.00 0.00 4.11
142 143 0.041576 CATCACGCAGAATCATGCCG 60.042 55.000 0.00 0.00 43.49 5.69
241 242 2.986019 TGATGAAGAGAAACCCTCCCAA 59.014 45.455 0.00 0.00 42.97 4.12
243 244 2.573915 ACTGATGAAGAGAAACCCTCCC 59.426 50.000 0.00 0.00 42.97 4.30
253 254 5.461526 TCTGTACGTTGAACTGATGAAGAG 58.538 41.667 0.00 0.00 0.00 2.85
263 264 2.477375 TCGGCAAATCTGTACGTTGAAC 59.523 45.455 0.00 0.00 0.00 3.18
394 395 7.863375 ACGACTAGAGTAATACAAGATTGATGC 59.137 37.037 0.00 0.00 0.00 3.91
415 416 3.416119 TTATTCTGCGATCGAACGACT 57.584 42.857 21.57 7.92 35.09 4.18
444 445 3.243907 ACGACCATAGGAAGCTAAGATGC 60.244 47.826 0.00 0.00 0.00 3.91
525 530 5.867903 AGTCTCATTACATCCTTCCTGAG 57.132 43.478 0.00 0.00 33.16 3.35
617 622 4.410099 TCATGGAACTGGCTCAGATTTTT 58.590 39.130 8.91 0.00 35.18 1.94
618 623 4.038271 TCATGGAACTGGCTCAGATTTT 57.962 40.909 8.91 0.00 35.18 1.82
619 624 3.726557 TCATGGAACTGGCTCAGATTT 57.273 42.857 8.91 0.00 35.18 2.17
620 625 3.947612 ATCATGGAACTGGCTCAGATT 57.052 42.857 8.91 0.96 35.18 2.40
621 626 3.947612 AATCATGGAACTGGCTCAGAT 57.052 42.857 8.91 0.00 35.18 2.90
622 627 3.776969 ACTAATCATGGAACTGGCTCAGA 59.223 43.478 8.91 0.00 35.18 3.27
623 628 3.875727 CACTAATCATGGAACTGGCTCAG 59.124 47.826 0.00 1.16 37.52 3.35
624 629 3.370846 CCACTAATCATGGAACTGGCTCA 60.371 47.826 0.00 0.00 39.87 4.26
625 630 3.209410 CCACTAATCATGGAACTGGCTC 58.791 50.000 0.00 0.00 39.87 4.70
626 631 2.684927 GCCACTAATCATGGAACTGGCT 60.685 50.000 12.40 0.00 39.87 4.75
627 632 1.678101 GCCACTAATCATGGAACTGGC 59.322 52.381 0.00 0.00 39.87 4.85
628 633 2.301346 GGCCACTAATCATGGAACTGG 58.699 52.381 0.00 0.00 39.87 4.00
629 634 2.301346 GGGCCACTAATCATGGAACTG 58.699 52.381 4.39 0.00 39.87 3.16
630 635 1.215423 GGGGCCACTAATCATGGAACT 59.785 52.381 4.39 0.00 39.87 3.01
631 636 1.064017 TGGGGCCACTAATCATGGAAC 60.064 52.381 6.53 0.00 39.87 3.62
632 637 1.215173 CTGGGGCCACTAATCATGGAA 59.785 52.381 6.53 0.00 39.87 3.53
633 638 0.846015 CTGGGGCCACTAATCATGGA 59.154 55.000 6.53 0.00 39.87 3.41
634 639 0.552848 ACTGGGGCCACTAATCATGG 59.447 55.000 6.53 0.00 40.50 3.66
635 640 2.442236 AACTGGGGCCACTAATCATG 57.558 50.000 6.53 0.00 0.00 3.07
636 641 2.158813 CGTAACTGGGGCCACTAATCAT 60.159 50.000 6.53 0.00 0.00 2.45
637 642 1.208535 CGTAACTGGGGCCACTAATCA 59.791 52.381 6.53 0.00 0.00 2.57
638 643 1.474498 CCGTAACTGGGGCCACTAATC 60.474 57.143 6.53 0.00 0.00 1.75
639 644 0.544697 CCGTAACTGGGGCCACTAAT 59.455 55.000 6.53 0.00 0.00 1.73
640 645 1.984817 CCGTAACTGGGGCCACTAA 59.015 57.895 6.53 0.00 0.00 2.24
641 646 2.662070 GCCGTAACTGGGGCCACTA 61.662 63.158 6.53 0.00 43.64 2.74
642 647 4.029809 GCCGTAACTGGGGCCACT 62.030 66.667 6.53 0.00 43.64 4.00
647 652 1.752694 CCAATGGCCGTAACTGGGG 60.753 63.158 6.29 0.00 0.00 4.96
648 653 2.414785 GCCAATGGCCGTAACTGGG 61.415 63.158 14.47 5.88 44.06 4.45
658 663 3.175929 GTTATTACAACACGCCAATGGC 58.824 45.455 15.52 15.52 46.75 4.40
678 687 0.808755 GGATCCGTTTGCGAAATGGT 59.191 50.000 15.20 7.00 45.76 3.55
685 694 1.094785 AAATCAGGGATCCGTTTGCG 58.905 50.000 3.63 0.00 37.95 4.85
686 695 2.879826 CAAAATCAGGGATCCGTTTGC 58.120 47.619 3.63 0.00 0.00 3.68
715 724 1.333619 TGTTTCTTGCCGCTCTTGTTC 59.666 47.619 0.00 0.00 0.00 3.18
725 734 3.793465 GCAACAACTCTCTGTTTCTTGCC 60.793 47.826 0.00 0.00 40.46 4.52
739 748 0.316204 GCAATCTGGCTGCAACAACT 59.684 50.000 0.50 0.00 39.69 3.16
779 789 2.258726 GGTTTGAGTGTGACCGCCC 61.259 63.158 0.00 0.00 0.00 6.13
821 831 0.887933 GTTTCCGTGCATGGATTGGT 59.112 50.000 28.03 0.00 38.00 3.67
873 883 2.125106 GCGGTCAGTGGATGGGTC 60.125 66.667 0.00 0.00 0.00 4.46
874 884 0.980754 TATGCGGTCAGTGGATGGGT 60.981 55.000 0.00 0.00 0.00 4.51
875 885 0.180171 TTATGCGGTCAGTGGATGGG 59.820 55.000 0.00 0.00 0.00 4.00
876 886 1.670811 GTTTATGCGGTCAGTGGATGG 59.329 52.381 0.00 0.00 0.00 3.51
877 887 1.670811 GGTTTATGCGGTCAGTGGATG 59.329 52.381 0.00 0.00 0.00 3.51
878 888 1.280710 TGGTTTATGCGGTCAGTGGAT 59.719 47.619 0.00 0.00 0.00 3.41
879 889 0.687920 TGGTTTATGCGGTCAGTGGA 59.312 50.000 0.00 0.00 0.00 4.02
880 890 1.199097 GTTGGTTTATGCGGTCAGTGG 59.801 52.381 0.00 0.00 0.00 4.00
881 891 1.199097 GGTTGGTTTATGCGGTCAGTG 59.801 52.381 0.00 0.00 0.00 3.66
882 892 1.202830 TGGTTGGTTTATGCGGTCAGT 60.203 47.619 0.00 0.00 0.00 3.41
883 893 1.199097 GTGGTTGGTTTATGCGGTCAG 59.801 52.381 0.00 0.00 0.00 3.51
884 894 1.240256 GTGGTTGGTTTATGCGGTCA 58.760 50.000 0.00 0.00 0.00 4.02
912 922 3.557595 GGATTGGATTTGTAGAGCGAGTG 59.442 47.826 0.00 0.00 0.00 3.51
924 934 1.413517 GGGCAGGGATGGATTGGATTT 60.414 52.381 0.00 0.00 0.00 2.17
964 974 0.940126 GGTTCGTAGGTCGCGAGATA 59.060 55.000 10.24 1.83 45.19 1.98
1050 1060 1.228894 TCCCACGAGGAGCAAGACT 60.229 57.895 0.00 0.00 40.93 3.24
1073 1083 2.435410 CTGCAGCAGCGATCACCA 60.435 61.111 10.14 0.00 46.23 4.17
1179 1189 1.374947 GGAGCACCTGTGGTAGCAA 59.625 57.895 1.41 0.00 41.93 3.91
1379 1389 3.056179 TCAGCATCACATGTCCGAACTTA 60.056 43.478 0.00 0.00 0.00 2.24
1461 1471 7.367159 TCGCGGAATCAACTTCTAAATAAAA 57.633 32.000 6.13 0.00 34.08 1.52
1484 1494 2.194201 TTGGTTGATCCCGTCCTTTC 57.806 50.000 0.00 0.00 34.77 2.62
1503 1513 5.237344 GCGACTTGGCAAATTCTGTATCTAT 59.763 40.000 0.00 0.00 0.00 1.98
1660 3248 2.586425 CACAATGACTCCTTGTTGGGT 58.414 47.619 0.00 0.00 34.69 4.51
1763 3351 5.097742 TGTCATTATCGAATTGACCCACT 57.902 39.130 17.73 0.00 0.00 4.00
1822 3410 4.020039 TGCAAATGATTCCAAAATGGCTCT 60.020 37.500 0.00 0.00 37.47 4.09
1837 3425 2.930887 GCCTACGAGACAGTGCAAATGA 60.931 50.000 7.15 0.00 34.17 2.57
1855 3443 0.388294 GGATCGCCTTAACGTAGCCT 59.612 55.000 0.00 0.00 0.00 4.58
1864 3452 2.691526 ACGAATACAGTGGATCGCCTTA 59.308 45.455 12.50 0.00 38.80 2.69
1900 3488 7.726033 ATAGAGAAGAGAGTGTGTTGGTAAT 57.274 36.000 0.00 0.00 0.00 1.89
1910 3498 8.700051 TCCCTTTATTGAATAGAGAAGAGAGTG 58.300 37.037 4.47 0.00 0.00 3.51
1972 3560 6.558771 TGAATTCAATATGAACGCCCTATG 57.441 37.500 5.45 0.00 39.45 2.23
1973 3561 7.667219 AGAATGAATTCAATATGAACGCCCTAT 59.333 33.333 13.09 0.00 39.45 2.57
1980 3568 9.859427 TGTTTGGAGAATGAATTCAATATGAAC 57.141 29.630 13.09 11.55 39.45 3.18
1982 3570 9.859427 GTTGTTTGGAGAATGAATTCAATATGA 57.141 29.630 13.09 0.00 39.23 2.15
1983 3571 9.865321 AGTTGTTTGGAGAATGAATTCAATATG 57.135 29.630 13.09 0.00 39.23 1.78
1985 3573 9.076781 TGAGTTGTTTGGAGAATGAATTCAATA 57.923 29.630 13.09 0.00 39.23 1.90
1986 3574 7.954835 TGAGTTGTTTGGAGAATGAATTCAAT 58.045 30.769 13.09 3.42 39.23 2.57
1987 3575 7.345422 TGAGTTGTTTGGAGAATGAATTCAA 57.655 32.000 13.09 0.00 39.23 2.69
1988 3576 6.957920 TGAGTTGTTTGGAGAATGAATTCA 57.042 33.333 11.26 11.26 39.23 2.57
1989 3577 7.031975 GGATGAGTTGTTTGGAGAATGAATTC 58.968 38.462 0.00 0.00 37.06 2.17
1990 3578 6.494491 TGGATGAGTTGTTTGGAGAATGAATT 59.506 34.615 0.00 0.00 0.00 2.17
1991 3579 6.012113 TGGATGAGTTGTTTGGAGAATGAAT 58.988 36.000 0.00 0.00 0.00 2.57
1992 3580 5.384336 TGGATGAGTTGTTTGGAGAATGAA 58.616 37.500 0.00 0.00 0.00 2.57
1993 3581 4.984295 TGGATGAGTTGTTTGGAGAATGA 58.016 39.130 0.00 0.00 0.00 2.57
1994 3582 5.710513 TTGGATGAGTTGTTTGGAGAATG 57.289 39.130 0.00 0.00 0.00 2.67
1995 3583 6.729690 TTTTGGATGAGTTGTTTGGAGAAT 57.270 33.333 0.00 0.00 0.00 2.40
1996 3584 6.537453 TTTTTGGATGAGTTGTTTGGAGAA 57.463 33.333 0.00 0.00 0.00 2.87
1997 3585 6.239289 GGATTTTTGGATGAGTTGTTTGGAGA 60.239 38.462 0.00 0.00 0.00 3.71
1998 3586 5.928264 GGATTTTTGGATGAGTTGTTTGGAG 59.072 40.000 0.00 0.00 0.00 3.86
1999 3587 5.508825 CGGATTTTTGGATGAGTTGTTTGGA 60.509 40.000 0.00 0.00 0.00 3.53
2000 3588 4.685628 CGGATTTTTGGATGAGTTGTTTGG 59.314 41.667 0.00 0.00 0.00 3.28
2001 3589 5.527951 TCGGATTTTTGGATGAGTTGTTTG 58.472 37.500 0.00 0.00 0.00 2.93
2002 3590 5.782893 TCGGATTTTTGGATGAGTTGTTT 57.217 34.783 0.00 0.00 0.00 2.83
2003 3591 5.528870 GTTCGGATTTTTGGATGAGTTGTT 58.471 37.500 0.00 0.00 0.00 2.83
2004 3592 4.320202 CGTTCGGATTTTTGGATGAGTTGT 60.320 41.667 0.00 0.00 0.00 3.32
2005 3593 4.158384 CGTTCGGATTTTTGGATGAGTTG 58.842 43.478 0.00 0.00 0.00 3.16
2006 3594 3.190535 CCGTTCGGATTTTTGGATGAGTT 59.809 43.478 5.19 0.00 0.00 3.01
2007 3595 2.747446 CCGTTCGGATTTTTGGATGAGT 59.253 45.455 5.19 0.00 0.00 3.41
2008 3596 3.006940 TCCGTTCGGATTTTTGGATGAG 58.993 45.455 10.00 0.00 0.00 2.90
2009 3597 3.060736 TCCGTTCGGATTTTTGGATGA 57.939 42.857 10.00 0.00 0.00 2.92
2010 3598 3.694734 CATCCGTTCGGATTTTTGGATG 58.305 45.455 21.83 8.15 44.70 3.51
2011 3599 2.687935 CCATCCGTTCGGATTTTTGGAT 59.312 45.455 21.83 0.00 42.60 3.41
2012 3600 2.088423 CCATCCGTTCGGATTTTTGGA 58.912 47.619 21.83 0.00 42.60 3.53
2013 3601 2.088423 TCCATCCGTTCGGATTTTTGG 58.912 47.619 21.83 20.49 42.60 3.28
2014 3602 3.427503 CCTTCCATCCGTTCGGATTTTTG 60.428 47.826 21.83 13.33 42.60 2.44
2015 3603 2.752903 CCTTCCATCCGTTCGGATTTTT 59.247 45.455 21.83 1.81 42.60 1.94
2016 3604 2.026636 TCCTTCCATCCGTTCGGATTTT 60.027 45.455 21.83 2.17 42.60 1.82
2017 3605 1.557832 TCCTTCCATCCGTTCGGATTT 59.442 47.619 21.83 2.89 42.60 2.17
2018 3606 1.139058 CTCCTTCCATCCGTTCGGATT 59.861 52.381 21.83 7.09 42.60 3.01
2019 3607 0.753262 CTCCTTCCATCCGTTCGGAT 59.247 55.000 19.24 19.24 45.10 4.18
2020 3608 1.327690 CCTCCTTCCATCCGTTCGGA 61.328 60.000 16.22 16.22 38.82 4.55
2021 3609 1.144057 CCTCCTTCCATCCGTTCGG 59.856 63.158 4.74 4.74 0.00 4.30
2022 3610 1.521681 GCCTCCTTCCATCCGTTCG 60.522 63.158 0.00 0.00 0.00 3.95
2023 3611 1.521681 CGCCTCCTTCCATCCGTTC 60.522 63.158 0.00 0.00 0.00 3.95
2024 3612 2.584608 CGCCTCCTTCCATCCGTT 59.415 61.111 0.00 0.00 0.00 4.44
2025 3613 3.470888 CCGCCTCCTTCCATCCGT 61.471 66.667 0.00 0.00 0.00 4.69
2026 3614 4.241555 CCCGCCTCCTTCCATCCG 62.242 72.222 0.00 0.00 0.00 4.18
2027 3615 4.570874 GCCCGCCTCCTTCCATCC 62.571 72.222 0.00 0.00 0.00 3.51
2028 3616 2.631012 ATTGCCCGCCTCCTTCCATC 62.631 60.000 0.00 0.00 0.00 3.51
2029 3617 1.352622 TATTGCCCGCCTCCTTCCAT 61.353 55.000 0.00 0.00 0.00 3.41
2030 3618 1.352622 ATATTGCCCGCCTCCTTCCA 61.353 55.000 0.00 0.00 0.00 3.53
2031 3619 0.690762 TATATTGCCCGCCTCCTTCC 59.309 55.000 0.00 0.00 0.00 3.46
2032 3620 2.789409 ATATATTGCCCGCCTCCTTC 57.211 50.000 0.00 0.00 0.00 3.46
2033 3621 3.181434 TGAAATATATTGCCCGCCTCCTT 60.181 43.478 0.00 0.00 0.00 3.36
2034 3622 2.375174 TGAAATATATTGCCCGCCTCCT 59.625 45.455 0.00 0.00 0.00 3.69
2035 3623 2.790433 TGAAATATATTGCCCGCCTCC 58.210 47.619 0.00 0.00 0.00 4.30
2036 3624 5.648092 AGTATTGAAATATATTGCCCGCCTC 59.352 40.000 0.00 0.00 0.00 4.70
2037 3625 5.570320 AGTATTGAAATATATTGCCCGCCT 58.430 37.500 0.00 0.00 0.00 5.52
2038 3626 5.163652 GGAGTATTGAAATATATTGCCCGCC 60.164 44.000 0.00 0.00 0.00 6.13
2039 3627 5.163652 GGGAGTATTGAAATATATTGCCCGC 60.164 44.000 0.00 0.00 0.00 6.13
2040 3628 5.357032 GGGGAGTATTGAAATATATTGCCCG 59.643 44.000 0.00 0.00 38.16 6.13
2041 3629 5.656859 GGGGGAGTATTGAAATATATTGCCC 59.343 44.000 0.00 7.04 43.37 5.36
2042 3630 6.494059 AGGGGGAGTATTGAAATATATTGCC 58.506 40.000 0.00 0.00 30.58 4.52
2043 3631 7.121315 GTGAGGGGGAGTATTGAAATATATTGC 59.879 40.741 0.00 0.00 0.00 3.56
2044 3632 7.334421 CGTGAGGGGGAGTATTGAAATATATTG 59.666 40.741 0.00 0.00 0.00 1.90
2045 3633 7.394816 CGTGAGGGGGAGTATTGAAATATATT 58.605 38.462 0.00 0.00 0.00 1.28
2046 3634 6.576442 GCGTGAGGGGGAGTATTGAAATATAT 60.576 42.308 0.00 0.00 0.00 0.86
2047 3635 5.279809 GCGTGAGGGGGAGTATTGAAATATA 60.280 44.000 0.00 0.00 0.00 0.86
2048 3636 4.505039 GCGTGAGGGGGAGTATTGAAATAT 60.505 45.833 0.00 0.00 0.00 1.28
2049 3637 3.181458 GCGTGAGGGGGAGTATTGAAATA 60.181 47.826 0.00 0.00 0.00 1.40
2050 3638 2.421529 GCGTGAGGGGGAGTATTGAAAT 60.422 50.000 0.00 0.00 0.00 2.17
2051 3639 1.065709 GCGTGAGGGGGAGTATTGAAA 60.066 52.381 0.00 0.00 0.00 2.69
2052 3640 0.539986 GCGTGAGGGGGAGTATTGAA 59.460 55.000 0.00 0.00 0.00 2.69
2053 3641 0.325296 AGCGTGAGGGGGAGTATTGA 60.325 55.000 0.00 0.00 0.00 2.57
2054 3642 0.541863 AAGCGTGAGGGGGAGTATTG 59.458 55.000 0.00 0.00 0.00 1.90
2055 3643 2.040178 CTAAGCGTGAGGGGGAGTATT 58.960 52.381 0.00 0.00 0.00 1.89
2056 3644 1.217183 TCTAAGCGTGAGGGGGAGTAT 59.783 52.381 0.00 0.00 0.00 2.12
2057 3645 0.627451 TCTAAGCGTGAGGGGGAGTA 59.373 55.000 0.00 0.00 0.00 2.59
2058 3646 0.971447 GTCTAAGCGTGAGGGGGAGT 60.971 60.000 0.00 0.00 0.00 3.85
2059 3647 1.817209 GTCTAAGCGTGAGGGGGAG 59.183 63.158 0.00 0.00 0.00 4.30
2060 3648 2.050350 CGTCTAAGCGTGAGGGGGA 61.050 63.158 0.00 0.00 0.00 4.81
2061 3649 2.348888 ACGTCTAAGCGTGAGGGGG 61.349 63.158 0.00 0.00 43.99 5.40
2062 3650 3.285371 ACGTCTAAGCGTGAGGGG 58.715 61.111 0.00 0.00 43.99 4.79
2068 3656 1.028330 TCGATCCCACGTCTAAGCGT 61.028 55.000 0.00 0.00 46.88 5.07
2069 3657 0.311165 ATCGATCCCACGTCTAAGCG 59.689 55.000 0.00 0.00 37.94 4.68
2070 3658 1.067212 ACATCGATCCCACGTCTAAGC 59.933 52.381 0.00 0.00 34.70 3.09
2071 3659 3.813724 TCTACATCGATCCCACGTCTAAG 59.186 47.826 0.00 0.00 34.70 2.18
2072 3660 3.812262 TCTACATCGATCCCACGTCTAA 58.188 45.455 0.00 0.00 34.70 2.10
2073 3661 3.480505 TCTACATCGATCCCACGTCTA 57.519 47.619 0.00 0.00 34.70 2.59
2074 3662 2.343484 TCTACATCGATCCCACGTCT 57.657 50.000 0.00 0.00 34.70 4.18
2075 3663 3.204597 GATCTACATCGATCCCACGTC 57.795 52.381 0.00 0.00 34.98 4.34
2086 3674 5.643339 AAAACGATTCTGCGATCTACATC 57.357 39.130 0.00 0.00 34.83 3.06
2087 3675 7.715265 ATAAAAACGATTCTGCGATCTACAT 57.285 32.000 0.00 0.00 34.83 2.29
2088 3676 7.534085 AATAAAAACGATTCTGCGATCTACA 57.466 32.000 0.00 0.00 34.83 2.74
2089 3677 9.910511 TTAAATAAAAACGATTCTGCGATCTAC 57.089 29.630 0.00 0.00 34.83 2.59
2094 3682 9.697250 CAGTATTAAATAAAAACGATTCTGCGA 57.303 29.630 0.00 0.00 34.83 5.10
2095 3683 8.461398 GCAGTATTAAATAAAAACGATTCTGCG 58.539 33.333 0.00 0.00 34.11 5.18
2096 3684 8.461398 CGCAGTATTAAATAAAAACGATTCTGC 58.539 33.333 0.00 0.00 38.67 4.26
2097 3685 9.485591 ACGCAGTATTAAATAAAAACGATTCTG 57.514 29.630 0.00 0.00 41.94 3.02
2100 3688 8.580431 GCAACGCAGTATTAAATAAAAACGATT 58.420 29.630 0.00 0.00 45.00 3.34
2101 3689 7.219344 GGCAACGCAGTATTAAATAAAAACGAT 59.781 33.333 0.00 0.00 45.00 3.73
2102 3690 6.523893 GGCAACGCAGTATTAAATAAAAACGA 59.476 34.615 0.00 0.00 45.00 3.85
2103 3691 6.305877 TGGCAACGCAGTATTAAATAAAAACG 59.694 34.615 0.00 0.00 45.00 3.60
2104 3692 7.201401 CCTGGCAACGCAGTATTAAATAAAAAC 60.201 37.037 0.00 0.00 45.00 2.43
2105 3693 6.809196 CCTGGCAACGCAGTATTAAATAAAAA 59.191 34.615 0.00 0.00 45.00 1.94
2106 3694 6.326375 CCTGGCAACGCAGTATTAAATAAAA 58.674 36.000 0.00 0.00 45.00 1.52
2107 3695 5.163602 CCCTGGCAACGCAGTATTAAATAAA 60.164 40.000 0.00 0.00 45.00 1.40
2108 3696 4.336993 CCCTGGCAACGCAGTATTAAATAA 59.663 41.667 0.00 0.00 45.00 1.40
2109 3697 3.880490 CCCTGGCAACGCAGTATTAAATA 59.120 43.478 0.00 0.00 45.00 1.40
2110 3698 2.687935 CCCTGGCAACGCAGTATTAAAT 59.312 45.455 0.00 0.00 45.00 1.40
2111 3699 2.088423 CCCTGGCAACGCAGTATTAAA 58.912 47.619 0.00 0.00 45.00 1.52
2112 3700 1.003812 ACCCTGGCAACGCAGTATTAA 59.996 47.619 0.00 0.00 45.00 1.40
2113 3701 0.616371 ACCCTGGCAACGCAGTATTA 59.384 50.000 0.00 0.00 45.00 0.98
2114 3702 0.676782 GACCCTGGCAACGCAGTATT 60.677 55.000 0.00 0.00 45.00 1.89
2115 3703 1.078426 GACCCTGGCAACGCAGTAT 60.078 57.895 0.00 0.00 45.00 2.12
2116 3704 1.764571 AAGACCCTGGCAACGCAGTA 61.765 55.000 0.00 0.00 45.00 2.74
2118 3706 2.281761 AAGACCCTGGCAACGCAG 60.282 61.111 0.00 0.00 42.51 5.18
2119 3707 2.594303 CAAGACCCTGGCAACGCA 60.594 61.111 0.00 0.00 42.51 5.24
2120 3708 1.896660 TTCAAGACCCTGGCAACGC 60.897 57.895 0.00 0.00 42.51 4.84
2121 3709 0.535102 AGTTCAAGACCCTGGCAACG 60.535 55.000 0.00 0.00 42.51 4.10
2122 3710 1.239347 GAGTTCAAGACCCTGGCAAC 58.761 55.000 0.00 0.00 0.00 4.17
2123 3711 0.843309 TGAGTTCAAGACCCTGGCAA 59.157 50.000 0.00 0.00 0.00 4.52
2124 3712 0.843309 TTGAGTTCAAGACCCTGGCA 59.157 50.000 0.00 0.00 0.00 4.92
2125 3713 3.725754 TTGAGTTCAAGACCCTGGC 57.274 52.632 0.00 0.00 0.00 4.85
2133 3721 2.873649 GCCAGGAGGTCTTGAGTTCAAG 60.874 54.545 14.28 14.28 43.95 3.02
2134 3722 1.072331 GCCAGGAGGTCTTGAGTTCAA 59.928 52.381 0.00 0.00 37.19 2.69
2135 3723 0.687354 GCCAGGAGGTCTTGAGTTCA 59.313 55.000 0.00 0.00 37.19 3.18
2136 3724 0.980423 AGCCAGGAGGTCTTGAGTTC 59.020 55.000 0.00 0.00 37.19 3.01
2137 3725 0.980423 GAGCCAGGAGGTCTTGAGTT 59.020 55.000 0.00 0.00 40.01 3.01
2138 3726 2.677508 GAGCCAGGAGGTCTTGAGT 58.322 57.895 0.00 0.00 40.01 3.41
2144 3732 2.679082 TGGTATTAGAGCCAGGAGGTC 58.321 52.381 0.00 0.00 43.67 3.85
2145 3733 2.868964 TGGTATTAGAGCCAGGAGGT 57.131 50.000 0.00 0.00 37.19 3.85
2146 3734 5.485353 TCAATATGGTATTAGAGCCAGGAGG 59.515 44.000 0.00 0.00 38.27 4.30
2147 3735 6.611613 TCAATATGGTATTAGAGCCAGGAG 57.388 41.667 0.00 0.00 38.27 3.69
2148 3736 7.574021 ATTCAATATGGTATTAGAGCCAGGA 57.426 36.000 0.00 0.00 38.27 3.86
2149 3737 8.641498 AAATTCAATATGGTATTAGAGCCAGG 57.359 34.615 0.00 0.00 38.27 4.45
2159 3747 9.492973 GGCTGCAAAATAAATTCAATATGGTAT 57.507 29.630 0.50 0.00 0.00 2.73
2160 3748 8.481314 TGGCTGCAAAATAAATTCAATATGGTA 58.519 29.630 0.50 0.00 0.00 3.25
2161 3749 7.337167 TGGCTGCAAAATAAATTCAATATGGT 58.663 30.769 0.50 0.00 0.00 3.55
2162 3750 7.789273 TGGCTGCAAAATAAATTCAATATGG 57.211 32.000 0.50 0.00 0.00 2.74
2163 3751 8.885722 AGTTGGCTGCAAAATAAATTCAATATG 58.114 29.630 0.50 0.00 0.00 1.78
2164 3752 9.101655 GAGTTGGCTGCAAAATAAATTCAATAT 57.898 29.630 0.50 0.00 0.00 1.28
2165 3753 8.093307 TGAGTTGGCTGCAAAATAAATTCAATA 58.907 29.630 0.50 0.00 0.00 1.90
2166 3754 6.935771 TGAGTTGGCTGCAAAATAAATTCAAT 59.064 30.769 0.50 0.00 0.00 2.57
2167 3755 6.286758 TGAGTTGGCTGCAAAATAAATTCAA 58.713 32.000 0.50 0.00 0.00 2.69
2168 3756 5.851720 TGAGTTGGCTGCAAAATAAATTCA 58.148 33.333 0.50 0.00 0.00 2.57
2169 3757 6.036408 GGATGAGTTGGCTGCAAAATAAATTC 59.964 38.462 0.50 0.00 0.00 2.17
2170 3758 5.876460 GGATGAGTTGGCTGCAAAATAAATT 59.124 36.000 0.50 0.00 0.00 1.82
2171 3759 5.046448 TGGATGAGTTGGCTGCAAAATAAAT 60.046 36.000 0.50 0.00 0.00 1.40
2172 3760 4.282957 TGGATGAGTTGGCTGCAAAATAAA 59.717 37.500 0.50 0.00 0.00 1.40
2173 3761 3.831333 TGGATGAGTTGGCTGCAAAATAA 59.169 39.130 0.50 0.00 0.00 1.40
2174 3762 3.429492 TGGATGAGTTGGCTGCAAAATA 58.571 40.909 0.50 0.00 0.00 1.40
2175 3763 2.250031 TGGATGAGTTGGCTGCAAAAT 58.750 42.857 0.50 0.00 0.00 1.82
2176 3764 1.702182 TGGATGAGTTGGCTGCAAAA 58.298 45.000 0.50 0.00 0.00 2.44
2177 3765 1.702182 TTGGATGAGTTGGCTGCAAA 58.298 45.000 0.50 0.00 0.00 3.68
2178 3766 1.702182 TTTGGATGAGTTGGCTGCAA 58.298 45.000 0.50 0.00 0.00 4.08
2179 3767 1.702182 TTTTGGATGAGTTGGCTGCA 58.298 45.000 0.50 0.00 0.00 4.41
2180 3768 2.818130 TTTTTGGATGAGTTGGCTGC 57.182 45.000 0.00 0.00 0.00 5.25
2181 3769 3.922240 CGAATTTTTGGATGAGTTGGCTG 59.078 43.478 0.00 0.00 0.00 4.85
2182 3770 3.826157 TCGAATTTTTGGATGAGTTGGCT 59.174 39.130 0.00 0.00 0.00 4.75
2183 3771 4.173036 TCGAATTTTTGGATGAGTTGGC 57.827 40.909 0.00 0.00 0.00 4.52
2184 3772 5.630680 CAGTTCGAATTTTTGGATGAGTTGG 59.369 40.000 0.00 0.00 0.00 3.77
2185 3773 6.437928 TCAGTTCGAATTTTTGGATGAGTTG 58.562 36.000 0.00 0.00 0.00 3.16
2186 3774 6.633500 TCAGTTCGAATTTTTGGATGAGTT 57.367 33.333 0.00 0.00 0.00 3.01
2187 3775 6.349611 CCATCAGTTCGAATTTTTGGATGAGT 60.350 38.462 15.75 0.00 34.35 3.41
2188 3776 6.032094 CCATCAGTTCGAATTTTTGGATGAG 58.968 40.000 15.75 6.56 34.35 2.90
2189 3777 5.709631 TCCATCAGTTCGAATTTTTGGATGA 59.290 36.000 15.75 6.20 34.35 2.92
2190 3778 5.953183 TCCATCAGTTCGAATTTTTGGATG 58.047 37.500 14.05 12.06 0.00 3.51
2191 3779 5.945784 TCTCCATCAGTTCGAATTTTTGGAT 59.054 36.000 16.86 4.27 32.00 3.41
2192 3780 5.312895 TCTCCATCAGTTCGAATTTTTGGA 58.687 37.500 16.07 16.07 0.00 3.53
2193 3781 5.627499 TCTCCATCAGTTCGAATTTTTGG 57.373 39.130 0.00 6.71 0.00 3.28
2194 3782 6.583806 CCTTTCTCCATCAGTTCGAATTTTTG 59.416 38.462 0.00 0.00 0.00 2.44
2195 3783 6.681777 CCTTTCTCCATCAGTTCGAATTTTT 58.318 36.000 0.00 0.00 0.00 1.94
2196 3784 5.335976 GCCTTTCTCCATCAGTTCGAATTTT 60.336 40.000 0.00 0.00 0.00 1.82
2197 3785 4.156739 GCCTTTCTCCATCAGTTCGAATTT 59.843 41.667 0.00 0.00 0.00 1.82
2198 3786 3.691609 GCCTTTCTCCATCAGTTCGAATT 59.308 43.478 0.00 0.00 0.00 2.17
2199 3787 3.274288 GCCTTTCTCCATCAGTTCGAAT 58.726 45.455 0.00 0.00 0.00 3.34
2200 3788 2.699954 GCCTTTCTCCATCAGTTCGAA 58.300 47.619 0.00 0.00 0.00 3.71
2201 3789 1.404181 CGCCTTTCTCCATCAGTTCGA 60.404 52.381 0.00 0.00 0.00 3.71
2202 3790 1.002366 CGCCTTTCTCCATCAGTTCG 58.998 55.000 0.00 0.00 0.00 3.95
2203 3791 1.373570 CCGCCTTTCTCCATCAGTTC 58.626 55.000 0.00 0.00 0.00 3.01
2204 3792 0.035056 CCCGCCTTTCTCCATCAGTT 60.035 55.000 0.00 0.00 0.00 3.16
2205 3793 1.604378 CCCGCCTTTCTCCATCAGT 59.396 57.895 0.00 0.00 0.00 3.41
2206 3794 1.821332 GCCCGCCTTTCTCCATCAG 60.821 63.158 0.00 0.00 0.00 2.90
2207 3795 2.135903 TTGCCCGCCTTTCTCCATCA 62.136 55.000 0.00 0.00 0.00 3.07
2208 3796 0.753111 ATTGCCCGCCTTTCTCCATC 60.753 55.000 0.00 0.00 0.00 3.51
2209 3797 0.550914 TATTGCCCGCCTTTCTCCAT 59.449 50.000 0.00 0.00 0.00 3.41
2210 3798 0.550914 ATATTGCCCGCCTTTCTCCA 59.449 50.000 0.00 0.00 0.00 3.86
2211 3799 2.561478 TATATTGCCCGCCTTTCTCC 57.439 50.000 0.00 0.00 0.00 3.71
2212 3800 4.518970 TGAAATATATTGCCCGCCTTTCTC 59.481 41.667 0.00 0.00 0.00 2.87
2213 3801 4.469657 TGAAATATATTGCCCGCCTTTCT 58.530 39.130 0.00 0.00 0.00 2.52
2214 3802 4.846779 TGAAATATATTGCCCGCCTTTC 57.153 40.909 0.00 0.00 0.00 2.62
2215 3803 4.404073 TGTTGAAATATATTGCCCGCCTTT 59.596 37.500 0.00 0.00 0.00 3.11
2216 3804 3.957497 TGTTGAAATATATTGCCCGCCTT 59.043 39.130 0.00 0.00 0.00 4.35
2217 3805 3.561143 TGTTGAAATATATTGCCCGCCT 58.439 40.909 0.00 0.00 0.00 5.52
2218 3806 3.857010 GCTGTTGAAATATATTGCCCGCC 60.857 47.826 0.00 0.00 0.00 6.13
2219 3807 3.308530 GCTGTTGAAATATATTGCCCGC 58.691 45.455 0.00 0.00 0.00 6.13
2220 3808 3.900941 GGCTGTTGAAATATATTGCCCG 58.099 45.455 9.92 0.00 33.66 6.13
2222 3810 4.584325 TCTGGGCTGTTGAAATATATTGCC 59.416 41.667 11.87 11.87 38.49 4.52
2223 3811 5.772825 TCTGGGCTGTTGAAATATATTGC 57.227 39.130 0.00 0.00 0.00 3.56
2224 3812 9.252962 GAAATTCTGGGCTGTTGAAATATATTG 57.747 33.333 0.00 0.00 0.00 1.90
2225 3813 8.980596 TGAAATTCTGGGCTGTTGAAATATATT 58.019 29.630 0.00 0.00 0.00 1.28
2226 3814 8.416329 GTGAAATTCTGGGCTGTTGAAATATAT 58.584 33.333 0.00 0.00 0.00 0.86
2227 3815 7.395772 TGTGAAATTCTGGGCTGTTGAAATATA 59.604 33.333 0.00 0.00 0.00 0.86
2228 3816 6.211184 TGTGAAATTCTGGGCTGTTGAAATAT 59.789 34.615 0.00 0.00 0.00 1.28
2229 3817 5.538053 TGTGAAATTCTGGGCTGTTGAAATA 59.462 36.000 0.00 0.00 0.00 1.40
2230 3818 4.344679 TGTGAAATTCTGGGCTGTTGAAAT 59.655 37.500 0.00 0.00 0.00 2.17
2231 3819 3.703556 TGTGAAATTCTGGGCTGTTGAAA 59.296 39.130 0.00 0.00 0.00 2.69
2232 3820 3.295093 TGTGAAATTCTGGGCTGTTGAA 58.705 40.909 0.00 0.00 0.00 2.69
2233 3821 2.942804 TGTGAAATTCTGGGCTGTTGA 58.057 42.857 0.00 0.00 0.00 3.18
2234 3822 3.947910 ATGTGAAATTCTGGGCTGTTG 57.052 42.857 0.00 0.00 0.00 3.33
2235 3823 5.018809 ACATATGTGAAATTCTGGGCTGTT 58.981 37.500 7.78 0.00 0.00 3.16
2236 3824 4.603131 ACATATGTGAAATTCTGGGCTGT 58.397 39.130 7.78 0.00 0.00 4.40
2267 3855 7.104290 GCTTTAAAGAGTAGTAGGGTGTCATT 58.896 38.462 19.48 0.00 0.00 2.57
2272 3860 4.159135 TCGGCTTTAAAGAGTAGTAGGGTG 59.841 45.833 19.48 0.00 0.00 4.61
2288 3876 1.098050 GCTTGATGACCATCGGCTTT 58.902 50.000 15.35 0.00 40.63 3.51
2294 3882 4.265073 ACCTAACTTGCTTGATGACCATC 58.735 43.478 3.17 3.17 38.29 3.51
2351 3939 4.735578 GCTGCATGGATTAATGTTCTGGTG 60.736 45.833 0.00 0.00 0.00 4.17
2371 3959 1.002379 AAGCAAGAGGGAGCAGCTG 60.002 57.895 10.11 10.11 35.42 4.24
2374 3962 0.615331 TACCAAGCAAGAGGGAGCAG 59.385 55.000 0.00 0.00 0.00 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.