Multiple sequence alignment - TraesCS3B01G243800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G243800 chr3B 100.000 2856 0 0 1 2856 385190871 385188016 0.000000e+00 5275.0
1 TraesCS3B01G243800 chr3B 91.882 1047 82 3 1812 2856 528629491 528628446 0.000000e+00 1459.0
2 TraesCS3B01G243800 chr3B 100.000 82 0 0 388 469 385190448 385190367 4.930000e-33 152.0
3 TraesCS3B01G243800 chr3B 100.000 82 0 0 424 505 385190484 385190403 4.930000e-33 152.0
4 TraesCS3B01G243800 chr3B 100.000 46 0 0 388 433 385190412 385190367 5.070000e-13 86.1
5 TraesCS3B01G243800 chr3B 100.000 46 0 0 460 505 385190484 385190439 5.070000e-13 86.1
6 TraesCS3B01G243800 chr3D 93.713 1368 50 16 460 1812 291976721 291975375 0.000000e+00 2017.0
7 TraesCS3B01G243800 chr3D 92.952 454 11 4 1 433 291977129 291976676 2.400000e-180 641.0
8 TraesCS3B01G243800 chr3D 97.826 46 1 0 424 469 291976721 291976676 2.360000e-11 80.5
9 TraesCS3B01G243800 chr3A 90.545 1375 84 23 460 1804 384732858 384731500 0.000000e+00 1777.0
10 TraesCS3B01G243800 chr3A 92.823 1045 73 2 1813 2856 481698585 481697542 0.000000e+00 1513.0
11 TraesCS3B01G243800 chr3A 94.010 384 19 4 1 382 384733269 384732888 1.910000e-161 579.0
12 TraesCS3B01G243800 chr2B 94.923 1044 51 2 1814 2856 183244383 183245425 0.000000e+00 1633.0
13 TraesCS3B01G243800 chr4B 94.061 1044 60 2 1814 2856 191652394 191653436 0.000000e+00 1583.0
14 TraesCS3B01G243800 chr1A 93.021 1046 71 2 1812 2856 481671078 481670034 0.000000e+00 1526.0
15 TraesCS3B01G243800 chr6B 92.529 1044 75 3 1814 2856 653772863 653773904 0.000000e+00 1493.0
16 TraesCS3B01G243800 chr6B 85.065 154 15 4 1050 1196 23605917 23605765 1.770000e-32 150.0
17 TraesCS3B01G243800 chr6B 85.517 145 15 2 1219 1359 23605583 23605441 2.290000e-31 147.0
18 TraesCS3B01G243800 chr6B 80.402 199 22 10 1409 1606 23605217 23605035 4.960000e-28 135.0
19 TraesCS3B01G243800 chr2D 91.866 1045 82 2 1813 2854 644537688 644538732 0.000000e+00 1456.0
20 TraesCS3B01G243800 chr4D 90.900 1044 90 2 1814 2856 342715244 342714205 0.000000e+00 1397.0
21 TraesCS3B01G243800 chr4D 91.749 909 73 2 1949 2856 433355865 433354958 0.000000e+00 1262.0
22 TraesCS3B01G243800 chr6D 77.833 203 37 5 181 382 13153160 13153355 5.000000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G243800 chr3B 385188016 385190871 2855 True 1150.240000 5275 100.000000 1 2856 5 chr3B.!!$R2 2855
1 TraesCS3B01G243800 chr3B 528628446 528629491 1045 True 1459.000000 1459 91.882000 1812 2856 1 chr3B.!!$R1 1044
2 TraesCS3B01G243800 chr3D 291975375 291977129 1754 True 912.833333 2017 94.830333 1 1812 3 chr3D.!!$R1 1811
3 TraesCS3B01G243800 chr3A 481697542 481698585 1043 True 1513.000000 1513 92.823000 1813 2856 1 chr3A.!!$R1 1043
4 TraesCS3B01G243800 chr3A 384731500 384733269 1769 True 1178.000000 1777 92.277500 1 1804 2 chr3A.!!$R2 1803
5 TraesCS3B01G243800 chr2B 183244383 183245425 1042 False 1633.000000 1633 94.923000 1814 2856 1 chr2B.!!$F1 1042
6 TraesCS3B01G243800 chr4B 191652394 191653436 1042 False 1583.000000 1583 94.061000 1814 2856 1 chr4B.!!$F1 1042
7 TraesCS3B01G243800 chr1A 481670034 481671078 1044 True 1526.000000 1526 93.021000 1812 2856 1 chr1A.!!$R1 1044
8 TraesCS3B01G243800 chr6B 653772863 653773904 1041 False 1493.000000 1493 92.529000 1814 2856 1 chr6B.!!$F1 1042
9 TraesCS3B01G243800 chr2D 644537688 644538732 1044 False 1456.000000 1456 91.866000 1813 2854 1 chr2D.!!$F1 1041
10 TraesCS3B01G243800 chr4D 342714205 342715244 1039 True 1397.000000 1397 90.900000 1814 2856 1 chr4D.!!$R1 1042
11 TraesCS3B01G243800 chr4D 433354958 433355865 907 True 1262.000000 1262 91.749000 1949 2856 1 chr4D.!!$R2 907

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
442 472 0.107017 AAGAATGTGCCCCGATCAGG 60.107 55.0 0.0 0.0 40.63 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2063 2140 0.314935 TAGTGTTCGACGGGGTGAAC 59.685 55.0 0.0 0.0 43.67 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 8.430431 TGTTTCCATCATGGTACGGTATATTTA 58.570 33.333 2.79 0.00 39.03 1.40
54 55 9.275398 GTTTCCATCATGGTACGGTATATTTAA 57.725 33.333 2.79 0.00 39.03 1.52
56 57 9.848710 TTCCATCATGGTACGGTATATTTAAAA 57.151 29.630 2.79 0.00 39.03 1.52
146 148 7.615582 AATTCTACAATGACCAGTGTATGTG 57.384 36.000 10.19 1.14 40.46 3.21
363 369 3.311322 TGTTCACGTCAAGGTTAAGCTTG 59.689 43.478 32.10 32.10 0.00 4.01
422 452 5.395768 CCGATCAGGGAGAATTTCTTGTAGT 60.396 44.000 0.00 0.00 35.97 2.73
423 453 6.183360 CCGATCAGGGAGAATTTCTTGTAGTA 60.183 42.308 0.00 0.00 35.97 1.82
424 454 7.265673 CGATCAGGGAGAATTTCTTGTAGTAA 58.734 38.462 0.00 0.00 0.00 2.24
425 455 7.436673 CGATCAGGGAGAATTTCTTGTAGTAAG 59.563 40.741 0.00 0.00 0.00 2.34
426 456 7.792364 TCAGGGAGAATTTCTTGTAGTAAGA 57.208 36.000 0.00 0.00 0.00 2.10
427 457 8.202461 TCAGGGAGAATTTCTTGTAGTAAGAA 57.798 34.615 0.00 0.00 34.73 2.52
428 458 8.826765 TCAGGGAGAATTTCTTGTAGTAAGAAT 58.173 33.333 0.00 0.00 36.30 2.40
429 459 8.887717 CAGGGAGAATTTCTTGTAGTAAGAATG 58.112 37.037 0.00 0.00 36.30 2.67
430 460 8.606830 AGGGAGAATTTCTTGTAGTAAGAATGT 58.393 33.333 0.00 0.00 36.30 2.71
431 461 8.669243 GGGAGAATTTCTTGTAGTAAGAATGTG 58.331 37.037 0.00 0.00 36.30 3.21
432 462 8.178313 GGAGAATTTCTTGTAGTAAGAATGTGC 58.822 37.037 0.00 0.00 36.30 4.57
433 463 8.045176 AGAATTTCTTGTAGTAAGAATGTGCC 57.955 34.615 3.25 0.00 36.30 5.01
434 464 6.759497 ATTTCTTGTAGTAAGAATGTGCCC 57.241 37.500 3.25 0.00 36.30 5.36
435 465 4.216411 TCTTGTAGTAAGAATGTGCCCC 57.784 45.455 0.00 0.00 0.00 5.80
436 466 2.684001 TGTAGTAAGAATGTGCCCCG 57.316 50.000 0.00 0.00 0.00 5.73
437 467 2.181125 TGTAGTAAGAATGTGCCCCGA 58.819 47.619 0.00 0.00 0.00 5.14
438 468 2.769663 TGTAGTAAGAATGTGCCCCGAT 59.230 45.455 0.00 0.00 0.00 4.18
439 469 2.622064 AGTAAGAATGTGCCCCGATC 57.378 50.000 0.00 0.00 0.00 3.69
440 470 1.837439 AGTAAGAATGTGCCCCGATCA 59.163 47.619 0.00 0.00 0.00 2.92
441 471 2.158900 AGTAAGAATGTGCCCCGATCAG 60.159 50.000 0.00 0.00 0.00 2.90
442 472 0.107017 AAGAATGTGCCCCGATCAGG 60.107 55.000 0.00 0.00 40.63 3.86
455 485 3.878778 CCGATCAGGGAGAATTTCTTGT 58.121 45.455 0.00 0.00 35.97 3.16
456 486 5.023533 CCGATCAGGGAGAATTTCTTGTA 57.976 43.478 0.00 0.00 35.97 2.41
457 487 5.053145 CCGATCAGGGAGAATTTCTTGTAG 58.947 45.833 0.00 0.00 35.97 2.74
458 488 5.395768 CCGATCAGGGAGAATTTCTTGTAGT 60.396 44.000 0.00 0.00 35.97 2.73
459 489 6.183360 CCGATCAGGGAGAATTTCTTGTAGTA 60.183 42.308 0.00 0.00 35.97 1.82
460 490 7.265673 CGATCAGGGAGAATTTCTTGTAGTAA 58.734 38.462 0.00 0.00 0.00 2.24
461 491 7.436673 CGATCAGGGAGAATTTCTTGTAGTAAG 59.563 40.741 0.00 0.00 0.00 2.34
462 492 7.792364 TCAGGGAGAATTTCTTGTAGTAAGA 57.208 36.000 0.00 0.00 0.00 2.10
463 493 8.202461 TCAGGGAGAATTTCTTGTAGTAAGAA 57.798 34.615 0.00 0.00 34.73 2.52
464 494 8.826765 TCAGGGAGAATTTCTTGTAGTAAGAAT 58.173 33.333 0.00 0.00 36.30 2.40
465 495 8.887717 CAGGGAGAATTTCTTGTAGTAAGAATG 58.112 37.037 0.00 0.00 36.30 2.67
466 496 8.606830 AGGGAGAATTTCTTGTAGTAAGAATGT 58.393 33.333 0.00 0.00 36.30 2.71
467 497 8.669243 GGGAGAATTTCTTGTAGTAAGAATGTG 58.331 37.037 0.00 0.00 36.30 3.21
468 498 8.178313 GGAGAATTTCTTGTAGTAAGAATGTGC 58.822 37.037 0.00 0.00 36.30 4.57
469 499 8.045176 AGAATTTCTTGTAGTAAGAATGTGCC 57.955 34.615 3.25 0.00 36.30 5.01
470 500 6.759497 ATTTCTTGTAGTAAGAATGTGCCC 57.241 37.500 3.25 0.00 36.30 5.36
471 501 4.216411 TCTTGTAGTAAGAATGTGCCCC 57.784 45.455 0.00 0.00 0.00 5.80
472 502 2.684001 TGTAGTAAGAATGTGCCCCG 57.316 50.000 0.00 0.00 0.00 5.73
473 503 2.181125 TGTAGTAAGAATGTGCCCCGA 58.819 47.619 0.00 0.00 0.00 5.14
474 504 2.769663 TGTAGTAAGAATGTGCCCCGAT 59.230 45.455 0.00 0.00 0.00 4.18
475 505 2.622064 AGTAAGAATGTGCCCCGATC 57.378 50.000 0.00 0.00 0.00 3.69
476 506 1.837439 AGTAAGAATGTGCCCCGATCA 59.163 47.619 0.00 0.00 0.00 2.92
477 507 2.158900 AGTAAGAATGTGCCCCGATCAG 60.159 50.000 0.00 0.00 0.00 2.90
478 508 0.107017 AAGAATGTGCCCCGATCAGG 60.107 55.000 0.00 0.00 40.63 3.86
491 521 3.878778 CCGATCAGGGAGAATTTCTTGT 58.121 45.455 0.00 0.00 35.97 3.16
492 522 5.023533 CCGATCAGGGAGAATTTCTTGTA 57.976 43.478 0.00 0.00 35.97 2.41
493 523 5.053145 CCGATCAGGGAGAATTTCTTGTAG 58.947 45.833 0.00 0.00 35.97 2.74
507 537 5.839262 TTCTTGTAGTAAGAATGTGCACG 57.161 39.130 13.13 0.00 31.86 5.34
579 609 4.307032 TTTCTTGGGAGCTTGCTATTCT 57.693 40.909 0.00 0.00 0.00 2.40
580 610 4.307032 TTCTTGGGAGCTTGCTATTCTT 57.693 40.909 0.00 0.00 0.00 2.52
581 611 4.307032 TCTTGGGAGCTTGCTATTCTTT 57.693 40.909 0.00 0.00 0.00 2.52
582 612 4.265073 TCTTGGGAGCTTGCTATTCTTTC 58.735 43.478 0.00 0.00 0.00 2.62
624 654 3.412386 AGCACGCAAGAAACCTTAGAAT 58.588 40.909 0.00 0.00 43.62 2.40
719 758 2.288152 ACGGTTAATTTGTGGCAAGCAG 60.288 45.455 0.00 0.00 0.00 4.24
721 760 3.057876 CGGTTAATTTGTGGCAAGCAGTA 60.058 43.478 0.00 0.00 0.00 2.74
722 761 4.380444 CGGTTAATTTGTGGCAAGCAGTAT 60.380 41.667 0.00 0.00 0.00 2.12
723 762 5.163703 CGGTTAATTTGTGGCAAGCAGTATA 60.164 40.000 0.00 0.00 0.00 1.47
724 763 6.265577 GGTTAATTTGTGGCAAGCAGTATAG 58.734 40.000 0.00 0.00 0.00 1.31
725 764 6.127730 GGTTAATTTGTGGCAAGCAGTATAGT 60.128 38.462 0.00 0.00 0.00 2.12
726 765 4.970662 ATTTGTGGCAAGCAGTATAGTG 57.029 40.909 2.97 2.97 0.00 2.74
727 766 1.737838 TGTGGCAAGCAGTATAGTGC 58.262 50.000 22.61 22.61 44.35 4.40
792 831 0.887933 CTACGCCCACTTTGCCAAAT 59.112 50.000 0.00 0.00 0.00 2.32
986 1034 8.053355 AGAACCCTATTTATACCACCTTTCTTG 58.947 37.037 0.00 0.00 0.00 3.02
1186 1238 0.465097 GCTACTCCACCTGCATGCAT 60.465 55.000 22.97 3.95 0.00 3.96
1205 1257 0.531753 TAAGTGCGACAACAGCAGCA 60.532 50.000 0.00 0.00 46.10 4.41
1345 1403 4.322385 GCGTGCCACCGTCCAAAC 62.322 66.667 0.00 0.00 0.00 2.93
1349 1407 1.098712 GTGCCACCGTCCAAACAAGA 61.099 55.000 0.00 0.00 0.00 3.02
1376 1434 2.471818 TGCGTTTTACTTGCTCGTACA 58.528 42.857 0.00 0.00 0.00 2.90
1377 1435 2.473609 TGCGTTTTACTTGCTCGTACAG 59.526 45.455 0.00 0.00 0.00 2.74
1466 1525 1.688197 ACCAAATGCTTCCACAACCAG 59.312 47.619 0.00 0.00 0.00 4.00
1494 1553 4.607025 GGCCAAACCCGGGTCCAA 62.607 66.667 30.40 0.00 0.00 3.53
1495 1554 2.522193 GCCAAACCCGGGTCCAAA 60.522 61.111 30.40 0.00 0.00 3.28
1496 1555 2.570284 GCCAAACCCGGGTCCAAAG 61.570 63.158 30.40 15.39 0.00 2.77
1497 1556 2.570284 CCAAACCCGGGTCCAAAGC 61.570 63.158 30.40 0.00 0.00 3.51
1498 1557 2.203582 AAACCCGGGTCCAAAGCC 60.204 61.111 30.40 0.00 39.82 4.35
1553 1621 4.148825 CCCAGACCTCCGAAGCCG 62.149 72.222 0.00 0.00 0.00 5.52
1630 1700 1.803289 GCCCAAGACAAAGCCGATC 59.197 57.895 0.00 0.00 0.00 3.69
1665 1735 0.384477 CTAGCTGTATCCGCGTCGAC 60.384 60.000 5.18 5.18 0.00 4.20
1724 1794 5.120208 ACGTCTATGCACACATACTTTCAAC 59.880 40.000 0.00 0.00 37.74 3.18
1730 1800 4.881273 TGCACACATACTTTCAACTGAACT 59.119 37.500 0.00 0.00 33.13 3.01
1804 1879 6.903534 AGTATATGTAGAGGGGGTATGATTGG 59.096 42.308 0.00 0.00 0.00 3.16
1885 1962 2.125350 GAGAGCCCTCCGCAGTTG 60.125 66.667 0.00 0.00 41.38 3.16
1974 2051 1.342074 CTCCGATGCCCCTATGAAGA 58.658 55.000 0.00 0.00 0.00 2.87
2001 2078 3.181440 TGCAAGGTCTCCTCTCAAAATGT 60.181 43.478 0.00 0.00 30.89 2.71
2004 2081 3.251484 AGGTCTCCTCTCAAAATGTCCA 58.749 45.455 0.00 0.00 0.00 4.02
2296 2375 2.030958 GTAGGTGGCCGGTCGTTTG 61.031 63.158 0.00 0.00 0.00 2.93
2303 2382 2.424302 CCGGTCGTTTGGTCCTGT 59.576 61.111 0.00 0.00 0.00 4.00
2332 2412 3.455469 GGGCAGGCATCTTGGTGC 61.455 66.667 0.00 0.00 44.31 5.01
2730 2810 0.391661 GGTGCGAGCTCTTGAATCCA 60.392 55.000 12.85 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
165 167 1.586422 CATGCGACCAATCCGAAGAT 58.414 50.000 0.00 0.00 0.00 2.40
422 452 1.140852 CCTGATCGGGGCACATTCTTA 59.859 52.381 13.34 0.00 0.00 2.10
423 453 0.107017 CCTGATCGGGGCACATTCTT 60.107 55.000 13.34 0.00 0.00 2.52
424 454 1.528824 CCTGATCGGGGCACATTCT 59.471 57.895 13.34 0.00 0.00 2.40
425 455 4.147701 CCTGATCGGGGCACATTC 57.852 61.111 13.34 0.00 0.00 2.67
434 464 3.878778 ACAAGAAATTCTCCCTGATCGG 58.121 45.455 0.00 0.00 0.00 4.18
435 465 5.665459 ACTACAAGAAATTCTCCCTGATCG 58.335 41.667 0.00 0.00 0.00 3.69
436 466 8.478877 TCTTACTACAAGAAATTCTCCCTGATC 58.521 37.037 0.00 0.00 0.00 2.92
437 467 8.380742 TCTTACTACAAGAAATTCTCCCTGAT 57.619 34.615 0.00 0.00 0.00 2.90
438 468 7.792364 TCTTACTACAAGAAATTCTCCCTGA 57.208 36.000 0.00 0.00 0.00 3.86
439 469 8.887717 CATTCTTACTACAAGAAATTCTCCCTG 58.112 37.037 0.00 0.00 39.43 4.45
440 470 8.606830 ACATTCTTACTACAAGAAATTCTCCCT 58.393 33.333 0.00 0.00 39.43 4.20
441 471 8.669243 CACATTCTTACTACAAGAAATTCTCCC 58.331 37.037 0.00 0.00 39.43 4.30
442 472 8.178313 GCACATTCTTACTACAAGAAATTCTCC 58.822 37.037 0.00 0.00 39.43 3.71
443 473 8.178313 GGCACATTCTTACTACAAGAAATTCTC 58.822 37.037 0.00 0.00 39.43 2.87
444 474 7.121315 GGGCACATTCTTACTACAAGAAATTCT 59.879 37.037 3.75 0.00 39.43 2.40
445 475 7.251281 GGGCACATTCTTACTACAAGAAATTC 58.749 38.462 3.75 0.00 39.43 2.17
446 476 6.152831 GGGGCACATTCTTACTACAAGAAATT 59.847 38.462 3.75 0.00 39.43 1.82
447 477 5.652452 GGGGCACATTCTTACTACAAGAAAT 59.348 40.000 3.75 0.00 39.43 2.17
448 478 5.007682 GGGGCACATTCTTACTACAAGAAA 58.992 41.667 3.75 0.00 39.43 2.52
449 479 4.585879 GGGGCACATTCTTACTACAAGAA 58.414 43.478 2.20 2.20 40.17 2.52
450 480 3.369052 CGGGGCACATTCTTACTACAAGA 60.369 47.826 0.00 0.00 0.00 3.02
451 481 2.936498 CGGGGCACATTCTTACTACAAG 59.064 50.000 0.00 0.00 0.00 3.16
452 482 2.568062 TCGGGGCACATTCTTACTACAA 59.432 45.455 0.00 0.00 0.00 2.41
453 483 2.181125 TCGGGGCACATTCTTACTACA 58.819 47.619 0.00 0.00 0.00 2.74
454 484 2.973694 TCGGGGCACATTCTTACTAC 57.026 50.000 0.00 0.00 0.00 2.73
455 485 3.035363 TGATCGGGGCACATTCTTACTA 58.965 45.455 0.00 0.00 0.00 1.82
456 486 1.837439 TGATCGGGGCACATTCTTACT 59.163 47.619 0.00 0.00 0.00 2.24
457 487 2.213499 CTGATCGGGGCACATTCTTAC 58.787 52.381 0.00 0.00 0.00 2.34
458 488 1.140852 CCTGATCGGGGCACATTCTTA 59.859 52.381 13.34 0.00 0.00 2.10
459 489 0.107017 CCTGATCGGGGCACATTCTT 60.107 55.000 13.34 0.00 0.00 2.52
460 490 1.528824 CCTGATCGGGGCACATTCT 59.471 57.895 13.34 0.00 0.00 2.40
461 491 4.147701 CCTGATCGGGGCACATTC 57.852 61.111 13.34 0.00 0.00 2.67
470 500 3.878778 ACAAGAAATTCTCCCTGATCGG 58.121 45.455 0.00 0.00 0.00 4.18
471 501 5.665459 ACTACAAGAAATTCTCCCTGATCG 58.335 41.667 0.00 0.00 0.00 3.69
472 502 8.478877 TCTTACTACAAGAAATTCTCCCTGATC 58.521 37.037 0.00 0.00 0.00 2.92
473 503 8.380742 TCTTACTACAAGAAATTCTCCCTGAT 57.619 34.615 0.00 0.00 0.00 2.90
474 504 7.792364 TCTTACTACAAGAAATTCTCCCTGA 57.208 36.000 0.00 0.00 0.00 3.86
475 505 8.887717 CATTCTTACTACAAGAAATTCTCCCTG 58.112 37.037 0.00 0.00 39.43 4.45
476 506 8.606830 ACATTCTTACTACAAGAAATTCTCCCT 58.393 33.333 0.00 0.00 39.43 4.20
477 507 8.669243 CACATTCTTACTACAAGAAATTCTCCC 58.331 37.037 0.00 0.00 39.43 4.30
478 508 8.178313 GCACATTCTTACTACAAGAAATTCTCC 58.822 37.037 0.00 0.00 39.43 3.71
479 509 8.721478 TGCACATTCTTACTACAAGAAATTCTC 58.279 33.333 0.00 0.00 39.43 2.87
480 510 8.507249 GTGCACATTCTTACTACAAGAAATTCT 58.493 33.333 13.17 0.00 39.43 2.40
481 511 7.478667 CGTGCACATTCTTACTACAAGAAATTC 59.521 37.037 18.64 0.00 39.43 2.17
482 512 7.298122 CGTGCACATTCTTACTACAAGAAATT 58.702 34.615 18.64 0.00 39.43 1.82
483 513 6.128282 CCGTGCACATTCTTACTACAAGAAAT 60.128 38.462 18.64 0.00 39.43 2.17
484 514 5.178623 CCGTGCACATTCTTACTACAAGAAA 59.821 40.000 18.64 0.00 39.43 2.52
485 515 4.688879 CCGTGCACATTCTTACTACAAGAA 59.311 41.667 18.64 2.20 40.17 2.52
486 516 4.242475 CCGTGCACATTCTTACTACAAGA 58.758 43.478 18.64 0.00 0.00 3.02
487 517 3.181520 GCCGTGCACATTCTTACTACAAG 60.182 47.826 18.64 0.00 0.00 3.16
488 518 2.739913 GCCGTGCACATTCTTACTACAA 59.260 45.455 18.64 0.00 0.00 2.41
489 519 2.343101 GCCGTGCACATTCTTACTACA 58.657 47.619 18.64 0.00 0.00 2.74
490 520 1.664151 GGCCGTGCACATTCTTACTAC 59.336 52.381 18.64 0.00 0.00 2.73
491 521 1.276705 TGGCCGTGCACATTCTTACTA 59.723 47.619 18.64 0.00 0.00 1.82
492 522 0.036164 TGGCCGTGCACATTCTTACT 59.964 50.000 18.64 0.00 0.00 2.24
493 523 1.094785 ATGGCCGTGCACATTCTTAC 58.905 50.000 18.64 0.00 0.00 2.34
507 537 3.520187 CAAGGTTTCTTGCATGGCC 57.480 52.632 0.00 0.00 43.10 5.36
579 609 5.612725 ATTTGCCCAAGTTGAAAGAGAAA 57.387 34.783 3.87 0.00 0.00 2.52
580 610 6.723298 TTATTTGCCCAAGTTGAAAGAGAA 57.277 33.333 3.87 0.00 0.00 2.87
581 611 5.278957 GCTTATTTGCCCAAGTTGAAAGAGA 60.279 40.000 3.87 0.00 0.00 3.10
582 612 4.925646 GCTTATTTGCCCAAGTTGAAAGAG 59.074 41.667 3.87 1.84 0.00 2.85
719 758 3.871594 AGCATCCAAACTTCGCACTATAC 59.128 43.478 0.00 0.00 0.00 1.47
721 760 2.991250 AGCATCCAAACTTCGCACTAT 58.009 42.857 0.00 0.00 0.00 2.12
722 761 2.472695 AGCATCCAAACTTCGCACTA 57.527 45.000 0.00 0.00 0.00 2.74
723 762 1.267806 CAAGCATCCAAACTTCGCACT 59.732 47.619 0.00 0.00 0.00 4.40
724 763 1.001378 ACAAGCATCCAAACTTCGCAC 60.001 47.619 0.00 0.00 0.00 5.34
725 764 1.317613 ACAAGCATCCAAACTTCGCA 58.682 45.000 0.00 0.00 0.00 5.10
726 765 2.053627 CAACAAGCATCCAAACTTCGC 58.946 47.619 0.00 0.00 0.00 4.70
727 766 3.624326 TCAACAAGCATCCAAACTTCG 57.376 42.857 0.00 0.00 0.00 3.79
823 862 0.933097 CTCATGCTTAATGCGCTCGT 59.067 50.000 9.73 0.00 46.63 4.18
888 932 5.577945 GGACAATACGAAACTGAATCGGTTA 59.422 40.000 8.00 0.00 44.32 2.85
951 996 6.589139 GGTATAAATAGGGTTCTTCGATTCGG 59.411 42.308 6.18 0.00 0.00 4.30
986 1034 2.939022 GTGTGACTGCCTTCGCAC 59.061 61.111 11.34 11.34 46.63 5.34
998 1046 0.617535 ATGGAGATGGACGGGTGTGA 60.618 55.000 0.00 0.00 0.00 3.58
1139 1191 0.243636 CACTGGGTTTCATTTCCGGC 59.756 55.000 0.00 0.00 0.00 6.13
1186 1238 0.531753 TGCTGCTGTTGTCGCACTTA 60.532 50.000 0.00 0.00 33.19 2.24
1205 1257 4.421479 CTTCTGGACGTCGCCGCT 62.421 66.667 9.92 0.00 37.70 5.52
1345 1403 3.888934 AGTAAAACGCATGTTGCTCTTG 58.111 40.909 0.00 0.00 42.25 3.02
1349 1407 2.034558 AGCAAGTAAAACGCATGTTGCT 59.965 40.909 9.41 9.41 44.37 3.91
1376 1434 4.401519 AGTCATGCTGGTTATGTACGTACT 59.598 41.667 25.12 13.70 0.00 2.73
1377 1435 4.679662 AGTCATGCTGGTTATGTACGTAC 58.320 43.478 18.90 18.90 0.00 3.67
1517 1585 2.902343 GGTGGCATAGGCTTCGGC 60.902 66.667 0.00 0.00 40.87 5.54
1526 1594 3.792736 GGTCTGGGCGGTGGCATA 61.793 66.667 0.00 0.00 42.47 3.14
1539 1607 3.082579 GCATCGGCTTCGGAGGTCT 62.083 63.158 0.00 0.00 36.96 3.85
1573 1643 2.421314 GGTTGGCTTTGGTGGCAC 59.579 61.111 9.70 9.70 42.23 5.01
1581 1651 4.589675 TTCGGCGGGGTTGGCTTT 62.590 61.111 7.21 0.00 0.00 3.51
1605 1675 1.067915 GCTTTGTCTTGGGCGCATTAA 60.068 47.619 10.83 0.00 0.00 1.40
1641 1711 1.301009 GCGGATACAGCTAGTGGCC 60.301 63.158 0.00 0.00 43.05 5.36
1665 1735 3.646650 CAGTTGTTGCTGGTGTTGG 57.353 52.632 0.00 0.00 33.11 3.77
1724 1794 4.555360 GTGCTGTATATATCGCGAGTTCAG 59.445 45.833 16.66 16.41 0.00 3.02
1730 1800 4.226761 CTGTTGTGCTGTATATATCGCGA 58.773 43.478 13.09 13.09 0.00 5.87
1778 1853 8.065627 CCAATCATACCCCCTCTACATATACTA 58.934 40.741 0.00 0.00 0.00 1.82
1879 1956 6.368213 GCCGGTAATTATGTAATACAACTGC 58.632 40.000 1.90 0.00 0.00 4.40
1885 1962 6.074356 ACGAAACGCCGGTAATTATGTAATAC 60.074 38.462 1.90 0.00 0.00 1.89
1974 2051 2.925170 AGGAGACCTTGCAGCGGT 60.925 61.111 9.28 9.28 37.50 5.68
2001 2078 1.203441 AGAGCTTGGATGCAGGTGGA 61.203 55.000 0.00 0.00 34.99 4.02
2004 2081 1.484240 GAGTAGAGCTTGGATGCAGGT 59.516 52.381 0.00 0.00 34.99 4.00
2063 2140 0.314935 TAGTGTTCGACGGGGTGAAC 59.685 55.000 0.00 0.00 43.67 3.18
2289 2368 2.223377 GTGATCAACAGGACCAAACGAC 59.777 50.000 0.00 0.00 0.00 4.34
2296 2375 2.493278 CCCATTTGTGATCAACAGGACC 59.507 50.000 0.00 0.00 40.74 4.46
2303 2382 0.896923 GCCTGCCCATTTGTGATCAA 59.103 50.000 0.00 0.00 0.00 2.57
2652 2732 1.067582 CGGACAGTATTCGAGGCCC 59.932 63.158 0.00 0.00 0.00 5.80
2730 2810 2.107141 GCTGGCTCGACGGCTATT 59.893 61.111 0.00 0.00 39.64 1.73
2833 2913 1.019805 GGGCGGAGTTCTCCTTTTCG 61.020 60.000 15.60 4.60 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.