Multiple sequence alignment - TraesCS3B01G243500
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G243500 | chr3B | 100.000 | 3683 | 0 | 0 | 1 | 3683 | 384908740 | 384912422 | 0.000000e+00 | 6802.0 |
1 | TraesCS3B01G243500 | chr3A | 94.520 | 2427 | 49 | 24 | 961 | 3359 | 384319779 | 384322149 | 0.000000e+00 | 3668.0 |
2 | TraesCS3B01G243500 | chr3A | 87.075 | 882 | 30 | 38 | 2 | 842 | 384318488 | 384319326 | 0.000000e+00 | 920.0 |
3 | TraesCS3B01G243500 | chr3A | 81.250 | 688 | 112 | 14 | 1190 | 1867 | 88854786 | 88855466 | 1.160000e-149 | 540.0 |
4 | TraesCS3B01G243500 | chr3A | 91.329 | 173 | 15 | 0 | 3511 | 3683 | 57468565 | 57468393 | 1.710000e-58 | 237.0 |
5 | TraesCS3B01G243500 | chr3A | 89.024 | 82 | 8 | 1 | 3431 | 3511 | 57468701 | 57468620 | 2.340000e-17 | 100.0 |
6 | TraesCS3B01G243500 | chr3D | 95.583 | 1562 | 44 | 6 | 730 | 2284 | 291765079 | 291766622 | 0.000000e+00 | 2479.0 |
7 | TraesCS3B01G243500 | chr3D | 92.289 | 1219 | 34 | 14 | 2178 | 3370 | 291766567 | 291767751 | 0.000000e+00 | 1676.0 |
8 | TraesCS3B01G243500 | chr3D | 90.072 | 1108 | 40 | 24 | 1 | 1084 | 291763986 | 291765047 | 0.000000e+00 | 1373.0 |
9 | TraesCS3B01G243500 | chr3D | 78.621 | 856 | 160 | 20 | 1190 | 2032 | 75355829 | 75356674 | 2.500000e-151 | 545.0 |
10 | TraesCS3B01G243500 | chr3D | 96.532 | 173 | 6 | 0 | 3511 | 3683 | 87329993 | 87329821 | 1.670000e-73 | 287.0 |
11 | TraesCS3B01G243500 | chr3D | 96.341 | 82 | 2 | 1 | 3431 | 3511 | 87330129 | 87330048 | 2.310000e-27 | 134.0 |
12 | TraesCS3B01G243500 | chr3D | 83.721 | 86 | 14 | 0 | 2393 | 2478 | 291766872 | 291766957 | 8.480000e-12 | 82.4 |
13 | TraesCS3B01G243500 | chr1D | 77.450 | 949 | 179 | 27 | 1178 | 2107 | 119010745 | 119009813 | 5.410000e-148 | 534.0 |
14 | TraesCS3B01G243500 | chr1D | 89.595 | 173 | 18 | 0 | 3511 | 3683 | 314005743 | 314005571 | 1.720000e-53 | 220.0 |
15 | TraesCS3B01G243500 | chr1B | 77.158 | 950 | 180 | 29 | 1178 | 2107 | 181218220 | 181217288 | 5.450000e-143 | 518.0 |
16 | TraesCS3B01G243500 | chr1A | 77.158 | 950 | 180 | 31 | 1178 | 2107 | 131521533 | 131520601 | 5.450000e-143 | 518.0 |
17 | TraesCS3B01G243500 | chr6D | 77.870 | 723 | 134 | 22 | 1178 | 1884 | 60168240 | 60167528 | 3.400000e-115 | 425.0 |
18 | TraesCS3B01G243500 | chr6D | 97.110 | 173 | 5 | 0 | 3511 | 3683 | 83112382 | 83112210 | 3.600000e-75 | 292.0 |
19 | TraesCS3B01G243500 | chr6D | 95.122 | 82 | 3 | 1 | 3431 | 3511 | 83112518 | 83112437 | 1.070000e-25 | 128.0 |
20 | TraesCS3B01G243500 | chr6B | 77.455 | 723 | 137 | 21 | 1178 | 1884 | 134000283 | 133999571 | 3.420000e-110 | 409.0 |
21 | TraesCS3B01G243500 | chr2D | 93.642 | 173 | 11 | 0 | 3511 | 3683 | 545502465 | 545502637 | 3.650000e-65 | 259.0 |
22 | TraesCS3B01G243500 | chr2D | 93.064 | 173 | 12 | 0 | 3511 | 3683 | 554348529 | 554348357 | 1.700000e-63 | 254.0 |
23 | TraesCS3B01G243500 | chr2A | 91.908 | 173 | 14 | 0 | 3511 | 3683 | 687497089 | 687496917 | 3.670000e-60 | 243.0 |
24 | TraesCS3B01G243500 | chr2A | 91.358 | 81 | 7 | 0 | 3431 | 3511 | 105412981 | 105412901 | 1.080000e-20 | 111.0 |
25 | TraesCS3B01G243500 | chr5A | 90.751 | 173 | 16 | 0 | 3511 | 3683 | 558232432 | 558232260 | 7.950000e-57 | 231.0 |
26 | TraesCS3B01G243500 | chr5A | 90.244 | 82 | 8 | 0 | 3430 | 3511 | 558232568 | 558232487 | 1.400000e-19 | 108.0 |
27 | TraesCS3B01G243500 | chr4A | 90.230 | 174 | 16 | 1 | 3511 | 3683 | 54399266 | 54399093 | 3.700000e-55 | 226.0 |
28 | TraesCS3B01G243500 | chr6A | 90.244 | 82 | 5 | 3 | 3431 | 3510 | 387970974 | 387971054 | 1.810000e-18 | 104.0 |
29 | TraesCS3B01G243500 | chr4B | 87.805 | 82 | 9 | 1 | 3431 | 3511 | 630364943 | 630364862 | 1.090000e-15 | 95.3 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G243500 | chr3B | 384908740 | 384912422 | 3682 | False | 6802.0 | 6802 | 100.00000 | 1 | 3683 | 1 | chr3B.!!$F1 | 3682 |
1 | TraesCS3B01G243500 | chr3A | 384318488 | 384322149 | 3661 | False | 2294.0 | 3668 | 90.79750 | 2 | 3359 | 2 | chr3A.!!$F2 | 3357 |
2 | TraesCS3B01G243500 | chr3A | 88854786 | 88855466 | 680 | False | 540.0 | 540 | 81.25000 | 1190 | 1867 | 1 | chr3A.!!$F1 | 677 |
3 | TraesCS3B01G243500 | chr3D | 291763986 | 291767751 | 3765 | False | 1402.6 | 2479 | 90.41625 | 1 | 3370 | 4 | chr3D.!!$F2 | 3369 |
4 | TraesCS3B01G243500 | chr3D | 75355829 | 75356674 | 845 | False | 545.0 | 545 | 78.62100 | 1190 | 2032 | 1 | chr3D.!!$F1 | 842 |
5 | TraesCS3B01G243500 | chr1D | 119009813 | 119010745 | 932 | True | 534.0 | 534 | 77.45000 | 1178 | 2107 | 1 | chr1D.!!$R1 | 929 |
6 | TraesCS3B01G243500 | chr1B | 181217288 | 181218220 | 932 | True | 518.0 | 518 | 77.15800 | 1178 | 2107 | 1 | chr1B.!!$R1 | 929 |
7 | TraesCS3B01G243500 | chr1A | 131520601 | 131521533 | 932 | True | 518.0 | 518 | 77.15800 | 1178 | 2107 | 1 | chr1A.!!$R1 | 929 |
8 | TraesCS3B01G243500 | chr6D | 60167528 | 60168240 | 712 | True | 425.0 | 425 | 77.87000 | 1178 | 1884 | 1 | chr6D.!!$R1 | 706 |
9 | TraesCS3B01G243500 | chr6B | 133999571 | 134000283 | 712 | True | 409.0 | 409 | 77.45500 | 1178 | 1884 | 1 | chr6B.!!$R1 | 706 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
513 | 556 | 0.458197 | GCACAAACAGCACAGCACAA | 60.458 | 50.0 | 0.0 | 0.0 | 0.0 | 3.33 | F |
1176 | 1940 | 0.460311 | CGTCCTACTCCTTCGCCAAT | 59.540 | 55.0 | 0.0 | 0.0 | 0.0 | 3.16 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1320 | 2087 | 1.153978 | GGCGACGACGGTGATGTAA | 60.154 | 57.895 | 9.67 | 0.0 | 40.15 | 2.41 | R |
3082 | 3951 | 1.052768 | GCAACGCGTCACAAATCGAC | 61.053 | 55.000 | 14.44 | 0.0 | 0.00 | 4.20 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
303 | 342 | 3.518634 | ATGGTTTATTTGCGCGGAAAT | 57.481 | 38.095 | 35.11 | 35.11 | 0.00 | 2.17 |
304 | 343 | 4.640789 | ATGGTTTATTTGCGCGGAAATA | 57.359 | 36.364 | 33.15 | 33.15 | 0.00 | 1.40 |
305 | 344 | 3.760537 | TGGTTTATTTGCGCGGAAATAC | 58.239 | 40.909 | 35.55 | 29.04 | 29.41 | 1.89 |
306 | 345 | 3.440872 | TGGTTTATTTGCGCGGAAATACT | 59.559 | 39.130 | 35.55 | 20.97 | 29.41 | 2.12 |
307 | 346 | 4.033019 | GGTTTATTTGCGCGGAAATACTC | 58.967 | 43.478 | 35.55 | 29.21 | 29.41 | 2.59 |
308 | 347 | 3.955771 | TTATTTGCGCGGAAATACTCC | 57.044 | 42.857 | 35.55 | 6.47 | 41.40 | 3.85 |
309 | 348 | 2.038387 | ATTTGCGCGGAAATACTCCT | 57.962 | 45.000 | 33.02 | 12.55 | 42.85 | 3.69 |
310 | 349 | 2.676632 | TTTGCGCGGAAATACTCCTA | 57.323 | 45.000 | 22.36 | 0.00 | 42.85 | 2.94 |
311 | 350 | 2.902705 | TTGCGCGGAAATACTCCTAT | 57.097 | 45.000 | 11.75 | 0.00 | 42.85 | 2.57 |
312 | 351 | 4.325028 | TTTGCGCGGAAATACTCCTATA | 57.675 | 40.909 | 22.36 | 0.00 | 42.85 | 1.31 |
512 | 555 | 1.139308 | GCACAAACAGCACAGCACA | 59.861 | 52.632 | 0.00 | 0.00 | 0.00 | 4.57 |
513 | 556 | 0.458197 | GCACAAACAGCACAGCACAA | 60.458 | 50.000 | 0.00 | 0.00 | 0.00 | 3.33 |
551 | 597 | 2.961526 | TTTTCTACTAGGGAGCGCAG | 57.038 | 50.000 | 11.47 | 0.00 | 0.00 | 5.18 |
577 | 623 | 4.878397 | AGCTAGCATCGCTTTCTTTGTTAT | 59.122 | 37.500 | 18.83 | 0.00 | 40.44 | 1.89 |
659 | 707 | 2.289547 | AGAAAACACCGTTCGTTGATGG | 59.710 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
698 | 752 | 8.710835 | AAAGAATCGTAAAAAGAAAAAGCCAA | 57.289 | 26.923 | 0.00 | 0.00 | 0.00 | 4.52 |
700 | 754 | 8.887036 | AGAATCGTAAAAAGAAAAAGCCAATT | 57.113 | 26.923 | 0.00 | 0.00 | 0.00 | 2.32 |
701 | 755 | 9.974980 | AGAATCGTAAAAAGAAAAAGCCAATTA | 57.025 | 25.926 | 0.00 | 0.00 | 0.00 | 1.40 |
784 | 842 | 2.964310 | GCTCCTCTTCCAGCTGCCA | 61.964 | 63.158 | 8.66 | 0.00 | 32.48 | 4.92 |
793 | 851 | 2.110967 | CCAGCTGCCAGTTGATCCG | 61.111 | 63.158 | 10.40 | 0.00 | 0.00 | 4.18 |
794 | 852 | 1.376424 | CAGCTGCCAGTTGATCCGT | 60.376 | 57.895 | 1.85 | 0.00 | 0.00 | 4.69 |
795 | 853 | 0.957395 | CAGCTGCCAGTTGATCCGTT | 60.957 | 55.000 | 1.85 | 0.00 | 0.00 | 4.44 |
796 | 854 | 0.957395 | AGCTGCCAGTTGATCCGTTG | 60.957 | 55.000 | 0.00 | 0.00 | 0.00 | 4.10 |
873 | 940 | 2.818274 | GCCGTCCGGTCCAATCAC | 60.818 | 66.667 | 7.66 | 0.00 | 37.65 | 3.06 |
934 | 1001 | 1.360393 | TGCTCCCCCATATGAACCCC | 61.360 | 60.000 | 3.65 | 0.00 | 0.00 | 4.95 |
935 | 1002 | 1.360393 | GCTCCCCCATATGAACCCCA | 61.360 | 60.000 | 3.65 | 0.00 | 0.00 | 4.96 |
969 | 1370 | 2.969238 | GAGCATCCATCCACGCCG | 60.969 | 66.667 | 0.00 | 0.00 | 0.00 | 6.46 |
972 | 1373 | 3.274586 | CATCCATCCACGCCGCAG | 61.275 | 66.667 | 0.00 | 0.00 | 0.00 | 5.18 |
1031 | 1432 | 2.988684 | GGCAATGGCGACCACCAA | 60.989 | 61.111 | 0.50 | 0.00 | 44.65 | 3.67 |
1032 | 1433 | 2.568090 | GCAATGGCGACCACCAAG | 59.432 | 61.111 | 0.50 | 0.00 | 44.65 | 3.61 |
1033 | 1434 | 1.971167 | GCAATGGCGACCACCAAGA | 60.971 | 57.895 | 0.50 | 0.00 | 44.65 | 3.02 |
1034 | 1435 | 1.875963 | CAATGGCGACCACCAAGAC | 59.124 | 57.895 | 0.50 | 0.00 | 44.65 | 3.01 |
1035 | 1436 | 1.671054 | AATGGCGACCACCAAGACG | 60.671 | 57.895 | 0.50 | 0.00 | 44.65 | 4.18 |
1078 | 1836 | 4.671590 | TCCTCGTCCCGCACCTCA | 62.672 | 66.667 | 0.00 | 0.00 | 0.00 | 3.86 |
1165 | 1929 | 1.003355 | TTCGTCGACCCGTCCTACT | 60.003 | 57.895 | 10.58 | 0.00 | 0.00 | 2.57 |
1176 | 1940 | 0.460311 | CGTCCTACTCCTTCGCCAAT | 59.540 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
1324 | 2091 | 1.613928 | TCCCAGGCGGACCATTACA | 60.614 | 57.895 | 0.00 | 0.00 | 39.06 | 2.41 |
1683 | 2456 | 4.021650 | GACAACGTCGGCAACTCA | 57.978 | 55.556 | 0.00 | 0.00 | 0.00 | 3.41 |
1794 | 2567 | 1.855295 | TACTCATGAACACCGGGCTA | 58.145 | 50.000 | 6.32 | 0.00 | 0.00 | 3.93 |
2502 | 3365 | 0.033796 | CACCAGAGGACCGGTACCTA | 60.034 | 60.000 | 21.12 | 0.00 | 37.93 | 3.08 |
2505 | 3368 | 1.133575 | CCAGAGGACCGGTACCTATCA | 60.134 | 57.143 | 21.12 | 0.00 | 37.93 | 2.15 |
2800 | 3666 | 9.143631 | CTTCTTCTTCTTCTTCATTCTTCTCTC | 57.856 | 37.037 | 0.00 | 0.00 | 0.00 | 3.20 |
3079 | 3948 | 0.386858 | CACGTTCACGATGAGACGGT | 60.387 | 55.000 | 6.30 | 0.00 | 43.02 | 4.83 |
3080 | 3949 | 0.109873 | ACGTTCACGATGAGACGGTC | 60.110 | 55.000 | 6.30 | 0.00 | 43.02 | 4.79 |
3081 | 3950 | 0.797249 | CGTTCACGATGAGACGGTCC | 60.797 | 60.000 | 4.14 | 0.00 | 43.02 | 4.46 |
3082 | 3951 | 0.797249 | GTTCACGATGAGACGGTCCG | 60.797 | 60.000 | 10.48 | 10.48 | 37.61 | 4.79 |
3281 | 4159 | 3.242641 | GCGCCTGTATAACTTAACCTTGC | 60.243 | 47.826 | 0.00 | 0.00 | 0.00 | 4.01 |
3352 | 4230 | 0.657077 | CGTCAACACCAACGTGCATG | 60.657 | 55.000 | 3.82 | 3.82 | 44.40 | 4.06 |
3370 | 4248 | 1.108776 | TGCGACTACTCCATGGTACC | 58.891 | 55.000 | 12.58 | 4.43 | 0.00 | 3.34 |
3371 | 4249 | 1.108776 | GCGACTACTCCATGGTACCA | 58.891 | 55.000 | 18.99 | 18.99 | 0.00 | 3.25 |
3372 | 4250 | 1.202382 | GCGACTACTCCATGGTACCAC | 60.202 | 57.143 | 19.09 | 0.00 | 0.00 | 4.16 |
3373 | 4251 | 2.376109 | CGACTACTCCATGGTACCACT | 58.624 | 52.381 | 19.09 | 3.70 | 0.00 | 4.00 |
3374 | 4252 | 3.548770 | CGACTACTCCATGGTACCACTA | 58.451 | 50.000 | 19.09 | 4.52 | 0.00 | 2.74 |
3375 | 4253 | 3.949754 | CGACTACTCCATGGTACCACTAA | 59.050 | 47.826 | 19.09 | 4.15 | 0.00 | 2.24 |
3376 | 4254 | 4.201990 | CGACTACTCCATGGTACCACTAAC | 60.202 | 50.000 | 19.09 | 1.53 | 0.00 | 2.34 |
3377 | 4255 | 4.680407 | ACTACTCCATGGTACCACTAACA | 58.320 | 43.478 | 19.09 | 0.04 | 0.00 | 2.41 |
3378 | 4256 | 5.088730 | ACTACTCCATGGTACCACTAACAA | 58.911 | 41.667 | 19.09 | 0.99 | 0.00 | 2.83 |
3379 | 4257 | 4.553330 | ACTCCATGGTACCACTAACAAG | 57.447 | 45.455 | 19.09 | 11.32 | 0.00 | 3.16 |
3380 | 4258 | 3.908103 | ACTCCATGGTACCACTAACAAGT | 59.092 | 43.478 | 19.09 | 11.95 | 0.00 | 3.16 |
3381 | 4259 | 4.349930 | ACTCCATGGTACCACTAACAAGTT | 59.650 | 41.667 | 19.09 | 0.00 | 0.00 | 2.66 |
3382 | 4260 | 5.163131 | ACTCCATGGTACCACTAACAAGTTT | 60.163 | 40.000 | 19.09 | 0.00 | 0.00 | 2.66 |
3383 | 4261 | 5.697067 | TCCATGGTACCACTAACAAGTTTT | 58.303 | 37.500 | 19.09 | 0.00 | 0.00 | 2.43 |
3384 | 4262 | 6.130569 | TCCATGGTACCACTAACAAGTTTTT | 58.869 | 36.000 | 19.09 | 0.00 | 0.00 | 1.94 |
3425 | 4303 | 5.997385 | GGTACCAGTAACAAGTTGAATGTG | 58.003 | 41.667 | 10.54 | 1.79 | 0.00 | 3.21 |
3426 | 4304 | 5.529800 | GGTACCAGTAACAAGTTGAATGTGT | 59.470 | 40.000 | 10.54 | 2.33 | 0.00 | 3.72 |
3427 | 4305 | 5.499139 | ACCAGTAACAAGTTGAATGTGTG | 57.501 | 39.130 | 10.54 | 0.00 | 0.00 | 3.82 |
3428 | 4306 | 4.202010 | ACCAGTAACAAGTTGAATGTGTGC | 60.202 | 41.667 | 10.54 | 0.00 | 0.00 | 4.57 |
3429 | 4307 | 4.202000 | CCAGTAACAAGTTGAATGTGTGCA | 60.202 | 41.667 | 10.54 | 0.00 | 0.00 | 4.57 |
3430 | 4308 | 5.507817 | CCAGTAACAAGTTGAATGTGTGCAT | 60.508 | 40.000 | 10.54 | 0.00 | 36.80 | 3.96 |
3431 | 4309 | 5.978919 | CAGTAACAAGTTGAATGTGTGCATT | 59.021 | 36.000 | 10.54 | 0.00 | 46.99 | 3.56 |
3432 | 4310 | 6.476380 | CAGTAACAAGTTGAATGTGTGCATTT | 59.524 | 34.615 | 10.54 | 0.00 | 44.61 | 2.32 |
3433 | 4311 | 7.010367 | CAGTAACAAGTTGAATGTGTGCATTTT | 59.990 | 33.333 | 10.54 | 0.00 | 44.61 | 1.82 |
3434 | 4312 | 6.740411 | AACAAGTTGAATGTGTGCATTTTT | 57.260 | 29.167 | 10.54 | 0.00 | 44.61 | 1.94 |
3458 | 4336 | 8.519799 | TTTTTCGGGAATCATAGAGCTTTATT | 57.480 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
3459 | 4337 | 7.730364 | TTTCGGGAATCATAGAGCTTTATTC | 57.270 | 36.000 | 0.00 | 0.00 | 0.00 | 1.75 |
3460 | 4338 | 6.419484 | TCGGGAATCATAGAGCTTTATTCA | 57.581 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
3461 | 4339 | 6.826668 | TCGGGAATCATAGAGCTTTATTCAA | 58.173 | 36.000 | 0.00 | 0.00 | 0.00 | 2.69 |
3462 | 4340 | 7.453393 | TCGGGAATCATAGAGCTTTATTCAAT | 58.547 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
3463 | 4341 | 7.604164 | TCGGGAATCATAGAGCTTTATTCAATC | 59.396 | 37.037 | 0.00 | 0.00 | 0.00 | 2.67 |
3464 | 4342 | 7.388776 | CGGGAATCATAGAGCTTTATTCAATCA | 59.611 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
3465 | 4343 | 9.240734 | GGGAATCATAGAGCTTTATTCAATCAT | 57.759 | 33.333 | 0.00 | 0.00 | 0.00 | 2.45 |
3473 | 4351 | 8.977267 | AGAGCTTTATTCAATCATTTCTAGCT | 57.023 | 30.769 | 0.00 | 0.00 | 37.90 | 3.32 |
3474 | 4352 | 9.054922 | AGAGCTTTATTCAATCATTTCTAGCTC | 57.945 | 33.333 | 0.00 | 0.00 | 46.81 | 4.09 |
3475 | 4353 | 8.164058 | AGCTTTATTCAATCATTTCTAGCTCC | 57.836 | 34.615 | 0.00 | 0.00 | 29.98 | 4.70 |
3476 | 4354 | 7.776969 | AGCTTTATTCAATCATTTCTAGCTCCA | 59.223 | 33.333 | 0.00 | 0.00 | 29.98 | 3.86 |
3477 | 4355 | 8.074972 | GCTTTATTCAATCATTTCTAGCTCCAG | 58.925 | 37.037 | 0.00 | 0.00 | 0.00 | 3.86 |
3478 | 4356 | 7.502120 | TTATTCAATCATTTCTAGCTCCAGC | 57.498 | 36.000 | 0.00 | 0.00 | 42.49 | 4.85 |
3489 | 4367 | 4.519437 | CTCCAGCGCGATCAGCCA | 62.519 | 66.667 | 12.10 | 0.00 | 44.76 | 4.75 |
3490 | 4368 | 3.804153 | CTCCAGCGCGATCAGCCAT | 62.804 | 63.158 | 12.10 | 0.00 | 44.76 | 4.40 |
3491 | 4369 | 3.344215 | CCAGCGCGATCAGCCATC | 61.344 | 66.667 | 12.10 | 0.00 | 44.76 | 3.51 |
3492 | 4370 | 2.586914 | CAGCGCGATCAGCCATCA | 60.587 | 61.111 | 12.10 | 0.00 | 44.76 | 3.07 |
3493 | 4371 | 2.279985 | AGCGCGATCAGCCATCAG | 60.280 | 61.111 | 12.10 | 0.00 | 44.76 | 2.90 |
3494 | 4372 | 3.344215 | GCGCGATCAGCCATCAGG | 61.344 | 66.667 | 12.10 | 0.00 | 44.76 | 3.86 |
3504 | 4382 | 2.885113 | CCATCAGGCTCGTCACGA | 59.115 | 61.111 | 0.00 | 0.00 | 0.00 | 4.35 |
3516 | 4394 | 3.211803 | TCGTCACGAGGAAACACATAG | 57.788 | 47.619 | 0.00 | 0.00 | 0.00 | 2.23 |
3517 | 4395 | 2.094906 | TCGTCACGAGGAAACACATAGG | 60.095 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
3518 | 4396 | 2.352421 | CGTCACGAGGAAACACATAGGT | 60.352 | 50.000 | 0.00 | 0.00 | 0.00 | 3.08 |
3527 | 4405 | 4.919653 | CACATAGGTGCGCTGAGT | 57.080 | 55.556 | 9.73 | 0.00 | 38.37 | 3.41 |
3528 | 4406 | 3.143675 | CACATAGGTGCGCTGAGTT | 57.856 | 52.632 | 9.73 | 0.00 | 38.37 | 3.01 |
3529 | 4407 | 0.723414 | CACATAGGTGCGCTGAGTTG | 59.277 | 55.000 | 9.73 | 3.73 | 38.37 | 3.16 |
3530 | 4408 | 0.321671 | ACATAGGTGCGCTGAGTTGT | 59.678 | 50.000 | 9.73 | 4.43 | 0.00 | 3.32 |
3531 | 4409 | 1.270839 | ACATAGGTGCGCTGAGTTGTT | 60.271 | 47.619 | 9.73 | 0.00 | 0.00 | 2.83 |
3532 | 4410 | 1.129251 | CATAGGTGCGCTGAGTTGTTG | 59.871 | 52.381 | 9.73 | 0.00 | 0.00 | 3.33 |
3533 | 4411 | 0.602638 | TAGGTGCGCTGAGTTGTTGG | 60.603 | 55.000 | 9.73 | 0.00 | 0.00 | 3.77 |
3534 | 4412 | 2.050985 | GTGCGCTGAGTTGTTGGC | 60.051 | 61.111 | 9.73 | 0.00 | 0.00 | 4.52 |
3535 | 4413 | 2.203195 | TGCGCTGAGTTGTTGGCT | 60.203 | 55.556 | 9.73 | 0.00 | 0.00 | 4.75 |
3536 | 4414 | 1.823470 | TGCGCTGAGTTGTTGGCTT | 60.823 | 52.632 | 9.73 | 0.00 | 0.00 | 4.35 |
3537 | 4415 | 1.370900 | GCGCTGAGTTGTTGGCTTG | 60.371 | 57.895 | 0.00 | 0.00 | 0.00 | 4.01 |
3538 | 4416 | 2.024918 | CGCTGAGTTGTTGGCTTGT | 58.975 | 52.632 | 0.00 | 0.00 | 0.00 | 3.16 |
3539 | 4417 | 0.040958 | CGCTGAGTTGTTGGCTTGTC | 60.041 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
3540 | 4418 | 1.312815 | GCTGAGTTGTTGGCTTGTCT | 58.687 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3541 | 4419 | 1.265365 | GCTGAGTTGTTGGCTTGTCTC | 59.735 | 52.381 | 0.00 | 0.00 | 0.00 | 3.36 |
3542 | 4420 | 2.564771 | CTGAGTTGTTGGCTTGTCTCA | 58.435 | 47.619 | 0.00 | 0.00 | 0.00 | 3.27 |
3543 | 4421 | 3.144506 | CTGAGTTGTTGGCTTGTCTCAT | 58.855 | 45.455 | 0.00 | 0.00 | 32.73 | 2.90 |
3544 | 4422 | 3.554934 | TGAGTTGTTGGCTTGTCTCATT | 58.445 | 40.909 | 0.00 | 0.00 | 0.00 | 2.57 |
3545 | 4423 | 4.713553 | TGAGTTGTTGGCTTGTCTCATTA | 58.286 | 39.130 | 0.00 | 0.00 | 0.00 | 1.90 |
3546 | 4424 | 4.515191 | TGAGTTGTTGGCTTGTCTCATTAC | 59.485 | 41.667 | 0.00 | 0.00 | 0.00 | 1.89 |
3547 | 4425 | 4.460263 | AGTTGTTGGCTTGTCTCATTACA | 58.540 | 39.130 | 0.00 | 0.00 | 0.00 | 2.41 |
3548 | 4426 | 5.072741 | AGTTGTTGGCTTGTCTCATTACAT | 58.927 | 37.500 | 0.00 | 0.00 | 0.00 | 2.29 |
3549 | 4427 | 6.237901 | AGTTGTTGGCTTGTCTCATTACATA | 58.762 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
3550 | 4428 | 6.886459 | AGTTGTTGGCTTGTCTCATTACATAT | 59.114 | 34.615 | 0.00 | 0.00 | 0.00 | 1.78 |
3551 | 4429 | 7.394359 | AGTTGTTGGCTTGTCTCATTACATATT | 59.606 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
3552 | 4430 | 7.087409 | TGTTGGCTTGTCTCATTACATATTG | 57.913 | 36.000 | 0.00 | 0.00 | 0.00 | 1.90 |
3553 | 4431 | 6.883756 | TGTTGGCTTGTCTCATTACATATTGA | 59.116 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
3554 | 4432 | 7.392953 | TGTTGGCTTGTCTCATTACATATTGAA | 59.607 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
3555 | 4433 | 7.320443 | TGGCTTGTCTCATTACATATTGAAC | 57.680 | 36.000 | 0.00 | 0.00 | 0.00 | 3.18 |
3556 | 4434 | 6.883756 | TGGCTTGTCTCATTACATATTGAACA | 59.116 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
3557 | 4435 | 7.392953 | TGGCTTGTCTCATTACATATTGAACAA | 59.607 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
3558 | 4436 | 7.698130 | GGCTTGTCTCATTACATATTGAACAAC | 59.302 | 37.037 | 0.00 | 0.00 | 0.00 | 3.32 |
3559 | 4437 | 8.236586 | GCTTGTCTCATTACATATTGAACAACA | 58.763 | 33.333 | 0.00 | 0.00 | 0.00 | 3.33 |
3576 | 4454 | 9.751542 | TTGAACAACAAAACTAAGAAAAGTTGA | 57.248 | 25.926 | 9.09 | 0.00 | 39.62 | 3.18 |
3577 | 4455 | 9.405587 | TGAACAACAAAACTAAGAAAAGTTGAG | 57.594 | 29.630 | 9.09 | 0.00 | 39.62 | 3.02 |
3578 | 4456 | 8.757164 | AACAACAAAACTAAGAAAAGTTGAGG | 57.243 | 30.769 | 9.09 | 0.00 | 39.62 | 3.86 |
3579 | 4457 | 6.811665 | ACAACAAAACTAAGAAAAGTTGAGGC | 59.188 | 34.615 | 9.09 | 0.00 | 39.62 | 4.70 |
3580 | 4458 | 6.775594 | ACAAAACTAAGAAAAGTTGAGGCT | 57.224 | 33.333 | 0.00 | 0.00 | 39.62 | 4.58 |
3581 | 4459 | 7.875327 | ACAAAACTAAGAAAAGTTGAGGCTA | 57.125 | 32.000 | 0.00 | 0.00 | 39.62 | 3.93 |
3582 | 4460 | 7.931275 | ACAAAACTAAGAAAAGTTGAGGCTAG | 58.069 | 34.615 | 0.00 | 0.00 | 39.62 | 3.42 |
3583 | 4461 | 6.561737 | AAACTAAGAAAAGTTGAGGCTAGC | 57.438 | 37.500 | 6.04 | 6.04 | 39.62 | 3.42 |
3584 | 4462 | 4.580868 | ACTAAGAAAAGTTGAGGCTAGCC | 58.419 | 43.478 | 27.19 | 27.19 | 0.00 | 3.93 |
3585 | 4463 | 2.498644 | AGAAAAGTTGAGGCTAGCCC | 57.501 | 50.000 | 30.42 | 21.06 | 36.58 | 5.19 |
3586 | 4464 | 8.168163 | AACTAAGAAAAGTTGAGGCTAGCCCT | 62.168 | 42.308 | 30.42 | 17.04 | 38.31 | 5.19 |
3587 | 4465 | 2.376855 | AGAAAAGTTGAGGCTAGCCCTT | 59.623 | 45.455 | 30.42 | 21.83 | 46.60 | 3.95 |
3588 | 4466 | 2.498644 | AAAGTTGAGGCTAGCCCTTC | 57.501 | 50.000 | 30.42 | 21.84 | 46.60 | 3.46 |
3589 | 4467 | 1.362224 | AAGTTGAGGCTAGCCCTTCA | 58.638 | 50.000 | 30.42 | 24.21 | 46.60 | 3.02 |
3590 | 4468 | 1.362224 | AGTTGAGGCTAGCCCTTCAA | 58.638 | 50.000 | 30.42 | 28.13 | 46.60 | 2.69 |
3591 | 4469 | 1.918957 | AGTTGAGGCTAGCCCTTCAAT | 59.081 | 47.619 | 30.43 | 20.35 | 46.60 | 2.57 |
3592 | 4470 | 2.310052 | AGTTGAGGCTAGCCCTTCAATT | 59.690 | 45.455 | 30.43 | 25.83 | 46.60 | 2.32 |
3593 | 4471 | 3.092301 | GTTGAGGCTAGCCCTTCAATTT | 58.908 | 45.455 | 30.43 | 13.53 | 46.60 | 1.82 |
3594 | 4472 | 3.004752 | TGAGGCTAGCCCTTCAATTTC | 57.995 | 47.619 | 30.42 | 18.17 | 46.60 | 2.17 |
3595 | 4473 | 1.943340 | GAGGCTAGCCCTTCAATTTCG | 59.057 | 52.381 | 30.42 | 0.00 | 46.60 | 3.46 |
3596 | 4474 | 1.559682 | AGGCTAGCCCTTCAATTTCGA | 59.440 | 47.619 | 30.42 | 0.00 | 43.06 | 3.71 |
3597 | 4475 | 1.943340 | GGCTAGCCCTTCAATTTCGAG | 59.057 | 52.381 | 24.19 | 0.00 | 0.00 | 4.04 |
3598 | 4476 | 2.420129 | GGCTAGCCCTTCAATTTCGAGA | 60.420 | 50.000 | 24.19 | 0.00 | 0.00 | 4.04 |
3599 | 4477 | 3.270877 | GCTAGCCCTTCAATTTCGAGAA | 58.729 | 45.455 | 2.29 | 0.00 | 0.00 | 2.87 |
3600 | 4478 | 3.311048 | GCTAGCCCTTCAATTTCGAGAAG | 59.689 | 47.826 | 2.29 | 5.41 | 40.64 | 2.85 |
3601 | 4479 | 3.703001 | AGCCCTTCAATTTCGAGAAGA | 57.297 | 42.857 | 12.36 | 0.00 | 42.95 | 2.87 |
3602 | 4480 | 4.021102 | AGCCCTTCAATTTCGAGAAGAA | 57.979 | 40.909 | 12.36 | 4.39 | 42.95 | 2.52 |
3603 | 4481 | 4.593956 | AGCCCTTCAATTTCGAGAAGAAT | 58.406 | 39.130 | 12.36 | 0.00 | 42.95 | 2.40 |
3604 | 4482 | 4.397417 | AGCCCTTCAATTTCGAGAAGAATG | 59.603 | 41.667 | 12.36 | 2.90 | 42.95 | 2.67 |
3605 | 4483 | 4.439289 | GCCCTTCAATTTCGAGAAGAATGG | 60.439 | 45.833 | 12.36 | 10.88 | 42.95 | 3.16 |
3606 | 4484 | 4.096984 | CCCTTCAATTTCGAGAAGAATGGG | 59.903 | 45.833 | 12.36 | 11.57 | 42.95 | 4.00 |
3607 | 4485 | 4.439289 | CCTTCAATTTCGAGAAGAATGGGC | 60.439 | 45.833 | 12.36 | 0.00 | 42.95 | 5.36 |
3608 | 4486 | 2.677836 | TCAATTTCGAGAAGAATGGGCG | 59.322 | 45.455 | 0.00 | 0.00 | 38.86 | 6.13 |
3609 | 4487 | 1.017387 | ATTTCGAGAAGAATGGGCGC | 58.983 | 50.000 | 0.00 | 0.00 | 38.86 | 6.53 |
3610 | 4488 | 0.036388 | TTTCGAGAAGAATGGGCGCT | 60.036 | 50.000 | 7.64 | 0.00 | 38.86 | 5.92 |
3611 | 4489 | 0.821517 | TTCGAGAAGAATGGGCGCTA | 59.178 | 50.000 | 7.64 | 0.00 | 33.14 | 4.26 |
3612 | 4490 | 1.040646 | TCGAGAAGAATGGGCGCTAT | 58.959 | 50.000 | 7.64 | 0.00 | 0.00 | 2.97 |
3613 | 4491 | 2.235891 | TCGAGAAGAATGGGCGCTATA | 58.764 | 47.619 | 7.64 | 0.00 | 0.00 | 1.31 |
3614 | 4492 | 2.626266 | TCGAGAAGAATGGGCGCTATAA | 59.374 | 45.455 | 7.64 | 0.00 | 0.00 | 0.98 |
3615 | 4493 | 2.731976 | CGAGAAGAATGGGCGCTATAAC | 59.268 | 50.000 | 7.64 | 0.00 | 0.00 | 1.89 |
3616 | 4494 | 3.728845 | GAGAAGAATGGGCGCTATAACA | 58.271 | 45.455 | 7.64 | 0.00 | 0.00 | 2.41 |
3617 | 4495 | 3.733337 | AGAAGAATGGGCGCTATAACAG | 58.267 | 45.455 | 7.64 | 0.00 | 0.00 | 3.16 |
3618 | 4496 | 3.388024 | AGAAGAATGGGCGCTATAACAGA | 59.612 | 43.478 | 7.64 | 0.00 | 0.00 | 3.41 |
3619 | 4497 | 3.393089 | AGAATGGGCGCTATAACAGAG | 57.607 | 47.619 | 7.64 | 0.00 | 0.00 | 3.35 |
3628 | 4506 | 3.861569 | GCTATAACAGAGCGCGAAAAT | 57.138 | 42.857 | 12.10 | 0.00 | 0.00 | 1.82 |
3629 | 4507 | 4.197107 | GCTATAACAGAGCGCGAAAATT | 57.803 | 40.909 | 12.10 | 0.00 | 0.00 | 1.82 |
3630 | 4508 | 3.962481 | GCTATAACAGAGCGCGAAAATTG | 59.038 | 43.478 | 12.10 | 2.32 | 0.00 | 2.32 |
3631 | 4509 | 4.494199 | GCTATAACAGAGCGCGAAAATTGT | 60.494 | 41.667 | 12.10 | 3.05 | 0.00 | 2.71 |
3632 | 4510 | 2.316119 | AACAGAGCGCGAAAATTGTC | 57.684 | 45.000 | 12.10 | 0.00 | 0.00 | 3.18 |
3633 | 4511 | 1.225855 | ACAGAGCGCGAAAATTGTCA | 58.774 | 45.000 | 12.10 | 0.00 | 0.00 | 3.58 |
3634 | 4512 | 1.069906 | ACAGAGCGCGAAAATTGTCAC | 60.070 | 47.619 | 12.10 | 0.00 | 0.00 | 3.67 |
3635 | 4513 | 0.163788 | AGAGCGCGAAAATTGTCACG | 59.836 | 50.000 | 12.10 | 1.57 | 0.00 | 4.35 |
3636 | 4514 | 0.162933 | GAGCGCGAAAATTGTCACGA | 59.837 | 50.000 | 12.10 | 0.00 | 0.00 | 4.35 |
3637 | 4515 | 0.163788 | AGCGCGAAAATTGTCACGAG | 59.836 | 50.000 | 12.10 | 2.42 | 0.00 | 4.18 |
3638 | 4516 | 0.110823 | GCGCGAAAATTGTCACGAGT | 60.111 | 50.000 | 12.10 | 0.00 | 0.00 | 4.18 |
3639 | 4517 | 1.659211 | GCGCGAAAATTGTCACGAGTT | 60.659 | 47.619 | 12.10 | 0.00 | 0.00 | 3.01 |
3640 | 4518 | 2.222624 | CGCGAAAATTGTCACGAGTTC | 58.777 | 47.619 | 0.00 | 0.00 | 0.00 | 3.01 |
3641 | 4519 | 2.571206 | GCGAAAATTGTCACGAGTTCC | 58.429 | 47.619 | 0.00 | 0.00 | 0.00 | 3.62 |
3642 | 4520 | 2.032377 | GCGAAAATTGTCACGAGTTCCA | 60.032 | 45.455 | 0.00 | 0.00 | 0.00 | 3.53 |
3643 | 4521 | 3.799035 | CGAAAATTGTCACGAGTTCCAG | 58.201 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
3644 | 4522 | 3.493129 | CGAAAATTGTCACGAGTTCCAGA | 59.507 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
3645 | 4523 | 4.376413 | CGAAAATTGTCACGAGTTCCAGAG | 60.376 | 45.833 | 0.00 | 0.00 | 0.00 | 3.35 |
3646 | 4524 | 3.753294 | AATTGTCACGAGTTCCAGAGT | 57.247 | 42.857 | 0.00 | 0.00 | 0.00 | 3.24 |
3647 | 4525 | 3.753294 | ATTGTCACGAGTTCCAGAGTT | 57.247 | 42.857 | 0.00 | 0.00 | 0.00 | 3.01 |
3648 | 4526 | 2.509052 | TGTCACGAGTTCCAGAGTTG | 57.491 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
3649 | 4527 | 1.754803 | TGTCACGAGTTCCAGAGTTGT | 59.245 | 47.619 | 0.00 | 0.00 | 0.00 | 3.32 |
3650 | 4528 | 2.953648 | TGTCACGAGTTCCAGAGTTGTA | 59.046 | 45.455 | 0.00 | 0.00 | 0.00 | 2.41 |
3651 | 4529 | 3.243301 | TGTCACGAGTTCCAGAGTTGTAC | 60.243 | 47.826 | 0.00 | 0.00 | 0.00 | 2.90 |
3652 | 4530 | 2.295349 | TCACGAGTTCCAGAGTTGTACC | 59.705 | 50.000 | 0.00 | 0.00 | 0.00 | 3.34 |
3653 | 4531 | 2.035449 | CACGAGTTCCAGAGTTGTACCA | 59.965 | 50.000 | 0.00 | 0.00 | 0.00 | 3.25 |
3654 | 4532 | 2.696707 | ACGAGTTCCAGAGTTGTACCAA | 59.303 | 45.455 | 0.00 | 0.00 | 0.00 | 3.67 |
3655 | 4533 | 3.057734 | CGAGTTCCAGAGTTGTACCAAC | 58.942 | 50.000 | 0.00 | 0.00 | 0.00 | 3.77 |
3656 | 4534 | 3.243771 | CGAGTTCCAGAGTTGTACCAACT | 60.244 | 47.826 | 9.24 | 9.24 | 0.00 | 3.16 |
3657 | 4535 | 4.308265 | GAGTTCCAGAGTTGTACCAACTC | 58.692 | 47.826 | 23.13 | 23.13 | 45.21 | 3.01 |
3658 | 4536 | 3.071167 | AGTTCCAGAGTTGTACCAACTCC | 59.929 | 47.826 | 25.57 | 14.45 | 45.82 | 3.85 |
3659 | 4537 | 2.684943 | TCCAGAGTTGTACCAACTCCA | 58.315 | 47.619 | 25.57 | 12.72 | 45.82 | 3.86 |
3660 | 4538 | 3.042682 | TCCAGAGTTGTACCAACTCCAA | 58.957 | 45.455 | 25.57 | 13.55 | 45.82 | 3.53 |
3661 | 4539 | 3.071023 | TCCAGAGTTGTACCAACTCCAAG | 59.929 | 47.826 | 25.57 | 18.09 | 45.82 | 3.61 |
3662 | 4540 | 2.808543 | CAGAGTTGTACCAACTCCAAGC | 59.191 | 50.000 | 25.57 | 8.49 | 45.82 | 4.01 |
3663 | 4541 | 2.438021 | AGAGTTGTACCAACTCCAAGCA | 59.562 | 45.455 | 25.57 | 0.00 | 45.82 | 3.91 |
3664 | 4542 | 3.118038 | AGAGTTGTACCAACTCCAAGCAA | 60.118 | 43.478 | 25.57 | 0.00 | 45.82 | 3.91 |
3665 | 4543 | 3.821033 | GAGTTGTACCAACTCCAAGCAAT | 59.179 | 43.478 | 21.04 | 0.00 | 40.46 | 3.56 |
3666 | 4544 | 3.821033 | AGTTGTACCAACTCCAAGCAATC | 59.179 | 43.478 | 3.85 | 0.00 | 0.00 | 2.67 |
3667 | 4545 | 3.788227 | TGTACCAACTCCAAGCAATCT | 57.212 | 42.857 | 0.00 | 0.00 | 0.00 | 2.40 |
3668 | 4546 | 4.901197 | TGTACCAACTCCAAGCAATCTA | 57.099 | 40.909 | 0.00 | 0.00 | 0.00 | 1.98 |
3669 | 4547 | 4.575885 | TGTACCAACTCCAAGCAATCTAC | 58.424 | 43.478 | 0.00 | 0.00 | 0.00 | 2.59 |
3670 | 4548 | 4.286032 | TGTACCAACTCCAAGCAATCTACT | 59.714 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
3671 | 4549 | 4.373156 | ACCAACTCCAAGCAATCTACTT | 57.627 | 40.909 | 0.00 | 0.00 | 0.00 | 2.24 |
3672 | 4550 | 4.327680 | ACCAACTCCAAGCAATCTACTTC | 58.672 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
3673 | 4551 | 4.202461 | ACCAACTCCAAGCAATCTACTTCA | 60.202 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
3674 | 4552 | 4.761739 | CCAACTCCAAGCAATCTACTTCAA | 59.238 | 41.667 | 0.00 | 0.00 | 0.00 | 2.69 |
3675 | 4553 | 5.241506 | CCAACTCCAAGCAATCTACTTCAAA | 59.758 | 40.000 | 0.00 | 0.00 | 0.00 | 2.69 |
3676 | 4554 | 5.948992 | ACTCCAAGCAATCTACTTCAAAC | 57.051 | 39.130 | 0.00 | 0.00 | 0.00 | 2.93 |
3677 | 4555 | 5.376625 | ACTCCAAGCAATCTACTTCAAACA | 58.623 | 37.500 | 0.00 | 0.00 | 0.00 | 2.83 |
3678 | 4556 | 5.239525 | ACTCCAAGCAATCTACTTCAAACAC | 59.760 | 40.000 | 0.00 | 0.00 | 0.00 | 3.32 |
3679 | 4557 | 4.518970 | TCCAAGCAATCTACTTCAAACACC | 59.481 | 41.667 | 0.00 | 0.00 | 0.00 | 4.16 |
3680 | 4558 | 4.278170 | CCAAGCAATCTACTTCAAACACCA | 59.722 | 41.667 | 0.00 | 0.00 | 0.00 | 4.17 |
3681 | 4559 | 5.215160 | CAAGCAATCTACTTCAAACACCAC | 58.785 | 41.667 | 0.00 | 0.00 | 0.00 | 4.16 |
3682 | 4560 | 4.718961 | AGCAATCTACTTCAAACACCACT | 58.281 | 39.130 | 0.00 | 0.00 | 0.00 | 4.00 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
22 | 23 | 5.091552 | TCCTGACCACAATTAAGTAGGAGT | 58.908 | 41.667 | 1.14 | 0.00 | 0.00 | 3.85 |
305 | 344 | 9.153721 | CGTAATCCAACTAGAGTAGTATAGGAG | 57.846 | 40.741 | 0.00 | 0.00 | 38.26 | 3.69 |
306 | 345 | 8.099537 | CCGTAATCCAACTAGAGTAGTATAGGA | 58.900 | 40.741 | 0.00 | 5.72 | 38.26 | 2.94 |
307 | 346 | 8.099537 | TCCGTAATCCAACTAGAGTAGTATAGG | 58.900 | 40.741 | 0.00 | 0.00 | 38.26 | 2.57 |
308 | 347 | 9.153721 | CTCCGTAATCCAACTAGAGTAGTATAG | 57.846 | 40.741 | 0.00 | 0.00 | 38.26 | 1.31 |
309 | 348 | 8.099537 | CCTCCGTAATCCAACTAGAGTAGTATA | 58.900 | 40.741 | 0.00 | 0.00 | 38.26 | 1.47 |
310 | 349 | 6.941436 | CCTCCGTAATCCAACTAGAGTAGTAT | 59.059 | 42.308 | 0.00 | 0.00 | 38.26 | 2.12 |
311 | 350 | 6.100279 | TCCTCCGTAATCCAACTAGAGTAGTA | 59.900 | 42.308 | 0.00 | 0.00 | 38.26 | 1.82 |
312 | 351 | 5.104193 | TCCTCCGTAATCCAACTAGAGTAGT | 60.104 | 44.000 | 0.00 | 0.00 | 41.73 | 2.73 |
551 | 597 | 2.147436 | AGAAAGCGATGCTAGCTAGC | 57.853 | 50.000 | 34.20 | 34.20 | 45.31 | 3.42 |
552 | 598 | 3.868077 | ACAAAGAAAGCGATGCTAGCTAG | 59.132 | 43.478 | 16.84 | 16.84 | 45.31 | 3.42 |
553 | 599 | 3.861840 | ACAAAGAAAGCGATGCTAGCTA | 58.138 | 40.909 | 17.23 | 2.58 | 45.31 | 3.32 |
673 | 727 | 8.710835 | TTGGCTTTTTCTTTTTACGATTCTTT | 57.289 | 26.923 | 0.00 | 0.00 | 0.00 | 2.52 |
700 | 754 | 8.977267 | TGATGATTGATGACCAATGTTGTATA | 57.023 | 30.769 | 0.00 | 0.00 | 45.00 | 1.47 |
701 | 755 | 7.776500 | TCTGATGATTGATGACCAATGTTGTAT | 59.224 | 33.333 | 0.00 | 0.00 | 45.00 | 2.29 |
784 | 842 | 0.036010 | CTCCAGCCAACGGATCAACT | 60.036 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
793 | 851 | 2.594592 | ACCAACGCTCCAGCCAAC | 60.595 | 61.111 | 0.00 | 0.00 | 37.91 | 3.77 |
794 | 852 | 2.281484 | GACCAACGCTCCAGCCAA | 60.281 | 61.111 | 0.00 | 0.00 | 37.91 | 4.52 |
795 | 853 | 4.329545 | GGACCAACGCTCCAGCCA | 62.330 | 66.667 | 0.00 | 0.00 | 37.91 | 4.75 |
796 | 854 | 3.628646 | ATGGACCAACGCTCCAGCC | 62.629 | 63.158 | 0.00 | 0.00 | 41.24 | 4.85 |
865 | 932 | 0.179032 | ATAATGGCGCGGTGATTGGA | 60.179 | 50.000 | 8.83 | 0.00 | 0.00 | 3.53 |
873 | 940 | 1.737793 | GGGAATAGAATAATGGCGCGG | 59.262 | 52.381 | 8.83 | 0.00 | 0.00 | 6.46 |
912 | 979 | 1.140312 | GTTCATATGGGGGAGCAGGA | 58.860 | 55.000 | 2.13 | 0.00 | 0.00 | 3.86 |
969 | 1370 | 3.969802 | GGGCTGTGTGTGTGCTGC | 61.970 | 66.667 | 0.00 | 0.00 | 0.00 | 5.25 |
1030 | 1431 | 2.364448 | GAGGAGGAGGGGCGTCTT | 60.364 | 66.667 | 0.00 | 0.00 | 0.00 | 3.01 |
1031 | 1432 | 2.864770 | GAAGAGGAGGAGGGGCGTCT | 62.865 | 65.000 | 0.00 | 0.00 | 0.00 | 4.18 |
1032 | 1433 | 2.364448 | AAGAGGAGGAGGGGCGTC | 60.364 | 66.667 | 0.00 | 0.00 | 0.00 | 5.19 |
1033 | 1434 | 2.364448 | GAAGAGGAGGAGGGGCGT | 60.364 | 66.667 | 0.00 | 0.00 | 0.00 | 5.68 |
1034 | 1435 | 3.157949 | GGAAGAGGAGGAGGGGCG | 61.158 | 72.222 | 0.00 | 0.00 | 0.00 | 6.13 |
1035 | 1436 | 1.764454 | GAGGAAGAGGAGGAGGGGC | 60.764 | 68.421 | 0.00 | 0.00 | 0.00 | 5.80 |
1036 | 1437 | 1.456705 | CGAGGAAGAGGAGGAGGGG | 60.457 | 68.421 | 0.00 | 0.00 | 0.00 | 4.79 |
1037 | 1438 | 2.131067 | GCGAGGAAGAGGAGGAGGG | 61.131 | 68.421 | 0.00 | 0.00 | 0.00 | 4.30 |
1320 | 2087 | 1.153978 | GGCGACGACGGTGATGTAA | 60.154 | 57.895 | 9.67 | 0.00 | 40.15 | 2.41 |
1401 | 2174 | 1.241990 | CGTGGAAGACGGAGAGGTCA | 61.242 | 60.000 | 0.00 | 0.00 | 44.85 | 4.02 |
2617 | 3480 | 3.554692 | CGGCATCTTCCACGTCGC | 61.555 | 66.667 | 0.00 | 0.00 | 0.00 | 5.19 |
2708 | 3571 | 9.645059 | AAACTCGTATATGATCAGAATGTATGG | 57.355 | 33.333 | 0.09 | 0.00 | 37.40 | 2.74 |
2800 | 3666 | 8.675705 | AAAAACAAGAACAAATTAATGGGAGG | 57.324 | 30.769 | 0.00 | 0.00 | 0.00 | 4.30 |
2843 | 3712 | 9.877137 | CATTATCGAATCGATCTTCTATAGGAG | 57.123 | 37.037 | 22.15 | 1.00 | 43.45 | 3.69 |
2844 | 3713 | 9.614792 | TCATTATCGAATCGATCTTCTATAGGA | 57.385 | 33.333 | 22.15 | 5.47 | 43.45 | 2.94 |
2845 | 3714 | 9.877137 | CTCATTATCGAATCGATCTTCTATAGG | 57.123 | 37.037 | 22.15 | 3.34 | 43.45 | 2.57 |
2857 | 3726 | 8.065557 | TGATGAAACTTCTCATTATCGAATCG | 57.934 | 34.615 | 0.00 | 0.00 | 36.15 | 3.34 |
3082 | 3951 | 1.052768 | GCAACGCGTCACAAATCGAC | 61.053 | 55.000 | 14.44 | 0.00 | 0.00 | 4.20 |
3140 | 4009 | 2.355599 | CATCCAGCTAGCGCTCCG | 60.356 | 66.667 | 16.34 | 7.90 | 45.15 | 4.63 |
3171 | 4040 | 2.684843 | GCTTGACCTTGAGCTGGCG | 61.685 | 63.158 | 0.00 | 0.00 | 36.01 | 5.69 |
3237 | 4114 | 4.282703 | GCATCCATTTTGAGGAGCCATATT | 59.717 | 41.667 | 0.00 | 0.00 | 38.83 | 1.28 |
3238 | 4115 | 3.830755 | GCATCCATTTTGAGGAGCCATAT | 59.169 | 43.478 | 0.00 | 0.00 | 38.83 | 1.78 |
3281 | 4159 | 2.299297 | AGACGTGGGTAAAGTCAAGAGG | 59.701 | 50.000 | 0.00 | 0.00 | 37.36 | 3.69 |
3352 | 4230 | 1.108776 | TGGTACCATGGAGTAGTCGC | 58.891 | 55.000 | 21.47 | 0.00 | 0.00 | 5.19 |
3391 | 4269 | 0.845337 | ACTGGTACCCCCGTCAAAAA | 59.155 | 50.000 | 10.07 | 0.00 | 35.15 | 1.94 |
3392 | 4270 | 1.727062 | TACTGGTACCCCCGTCAAAA | 58.273 | 50.000 | 10.07 | 0.00 | 35.15 | 2.44 |
3393 | 4271 | 1.347378 | GTTACTGGTACCCCCGTCAAA | 59.653 | 52.381 | 10.07 | 0.00 | 35.15 | 2.69 |
3394 | 4272 | 0.975887 | GTTACTGGTACCCCCGTCAA | 59.024 | 55.000 | 10.07 | 0.00 | 35.15 | 3.18 |
3395 | 4273 | 0.178938 | TGTTACTGGTACCCCCGTCA | 60.179 | 55.000 | 10.07 | 0.73 | 35.15 | 4.35 |
3396 | 4274 | 0.975887 | TTGTTACTGGTACCCCCGTC | 59.024 | 55.000 | 10.07 | 0.00 | 35.15 | 4.79 |
3397 | 4275 | 0.978907 | CTTGTTACTGGTACCCCCGT | 59.021 | 55.000 | 10.07 | 6.64 | 35.15 | 5.28 |
3398 | 4276 | 0.978907 | ACTTGTTACTGGTACCCCCG | 59.021 | 55.000 | 10.07 | 0.04 | 35.15 | 5.73 |
3399 | 4277 | 2.372837 | TCAACTTGTTACTGGTACCCCC | 59.627 | 50.000 | 10.07 | 0.00 | 0.00 | 5.40 |
3400 | 4278 | 3.775261 | TCAACTTGTTACTGGTACCCC | 57.225 | 47.619 | 10.07 | 0.00 | 0.00 | 4.95 |
3401 | 4279 | 5.048991 | CACATTCAACTTGTTACTGGTACCC | 60.049 | 44.000 | 10.07 | 0.00 | 0.00 | 3.69 |
3402 | 4280 | 5.529800 | ACACATTCAACTTGTTACTGGTACC | 59.470 | 40.000 | 4.43 | 4.43 | 0.00 | 3.34 |
3403 | 4281 | 6.427150 | CACACATTCAACTTGTTACTGGTAC | 58.573 | 40.000 | 0.00 | 0.00 | 0.00 | 3.34 |
3404 | 4282 | 5.008217 | GCACACATTCAACTTGTTACTGGTA | 59.992 | 40.000 | 0.00 | 0.00 | 0.00 | 3.25 |
3405 | 4283 | 4.202010 | GCACACATTCAACTTGTTACTGGT | 60.202 | 41.667 | 0.00 | 0.00 | 0.00 | 4.00 |
3406 | 4284 | 4.202000 | TGCACACATTCAACTTGTTACTGG | 60.202 | 41.667 | 0.00 | 0.00 | 0.00 | 4.00 |
3407 | 4285 | 4.919206 | TGCACACATTCAACTTGTTACTG | 58.081 | 39.130 | 0.00 | 0.00 | 0.00 | 2.74 |
3408 | 4286 | 5.772825 | ATGCACACATTCAACTTGTTACT | 57.227 | 34.783 | 0.00 | 0.00 | 30.07 | 2.24 |
3409 | 4287 | 6.826893 | AAATGCACACATTCAACTTGTTAC | 57.173 | 33.333 | 0.00 | 0.00 | 45.90 | 2.50 |
3410 | 4288 | 7.840342 | AAAAATGCACACATTCAACTTGTTA | 57.160 | 28.000 | 0.00 | 0.00 | 45.90 | 2.41 |
3411 | 4289 | 6.740411 | AAAAATGCACACATTCAACTTGTT | 57.260 | 29.167 | 0.00 | 0.00 | 45.90 | 2.83 |
3433 | 4311 | 8.519799 | AATAAAGCTCTATGATTCCCGAAAAA | 57.480 | 30.769 | 0.00 | 0.00 | 0.00 | 1.94 |
3434 | 4312 | 7.773224 | TGAATAAAGCTCTATGATTCCCGAAAA | 59.227 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
3435 | 4313 | 7.279615 | TGAATAAAGCTCTATGATTCCCGAAA | 58.720 | 34.615 | 0.00 | 0.00 | 0.00 | 3.46 |
3436 | 4314 | 6.826668 | TGAATAAAGCTCTATGATTCCCGAA | 58.173 | 36.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3437 | 4315 | 6.419484 | TGAATAAAGCTCTATGATTCCCGA | 57.581 | 37.500 | 0.00 | 0.00 | 0.00 | 5.14 |
3438 | 4316 | 7.388776 | TGATTGAATAAAGCTCTATGATTCCCG | 59.611 | 37.037 | 0.00 | 0.00 | 0.00 | 5.14 |
3439 | 4317 | 8.627208 | TGATTGAATAAAGCTCTATGATTCCC | 57.373 | 34.615 | 0.00 | 0.00 | 0.00 | 3.97 |
3448 | 4326 | 8.977267 | AGCTAGAAATGATTGAATAAAGCTCT | 57.023 | 30.769 | 0.00 | 0.00 | 31.24 | 4.09 |
3450 | 4328 | 7.776969 | TGGAGCTAGAAATGATTGAATAAAGCT | 59.223 | 33.333 | 0.00 | 0.00 | 39.16 | 3.74 |
3451 | 4329 | 7.934457 | TGGAGCTAGAAATGATTGAATAAAGC | 58.066 | 34.615 | 0.00 | 0.00 | 0.00 | 3.51 |
3452 | 4330 | 8.074972 | GCTGGAGCTAGAAATGATTGAATAAAG | 58.925 | 37.037 | 0.00 | 0.00 | 38.21 | 1.85 |
3453 | 4331 | 7.254898 | CGCTGGAGCTAGAAATGATTGAATAAA | 60.255 | 37.037 | 0.00 | 0.00 | 39.32 | 1.40 |
3454 | 4332 | 6.203530 | CGCTGGAGCTAGAAATGATTGAATAA | 59.796 | 38.462 | 0.00 | 0.00 | 39.32 | 1.40 |
3455 | 4333 | 5.698089 | CGCTGGAGCTAGAAATGATTGAATA | 59.302 | 40.000 | 0.00 | 0.00 | 39.32 | 1.75 |
3456 | 4334 | 4.514441 | CGCTGGAGCTAGAAATGATTGAAT | 59.486 | 41.667 | 0.00 | 0.00 | 39.32 | 2.57 |
3457 | 4335 | 3.873361 | CGCTGGAGCTAGAAATGATTGAA | 59.127 | 43.478 | 0.00 | 0.00 | 39.32 | 2.69 |
3458 | 4336 | 3.461061 | CGCTGGAGCTAGAAATGATTGA | 58.539 | 45.455 | 0.00 | 0.00 | 39.32 | 2.57 |
3459 | 4337 | 2.032204 | GCGCTGGAGCTAGAAATGATTG | 60.032 | 50.000 | 0.00 | 0.00 | 39.32 | 2.67 |
3460 | 4338 | 2.216898 | GCGCTGGAGCTAGAAATGATT | 58.783 | 47.619 | 0.00 | 0.00 | 39.32 | 2.57 |
3461 | 4339 | 1.871408 | CGCGCTGGAGCTAGAAATGAT | 60.871 | 52.381 | 5.56 | 0.00 | 39.32 | 2.45 |
3462 | 4340 | 0.528466 | CGCGCTGGAGCTAGAAATGA | 60.528 | 55.000 | 5.56 | 0.00 | 39.32 | 2.57 |
3463 | 4341 | 0.528466 | TCGCGCTGGAGCTAGAAATG | 60.528 | 55.000 | 5.56 | 0.00 | 39.32 | 2.32 |
3464 | 4342 | 0.390860 | ATCGCGCTGGAGCTAGAAAT | 59.609 | 50.000 | 5.56 | 0.00 | 39.32 | 2.17 |
3465 | 4343 | 0.249073 | GATCGCGCTGGAGCTAGAAA | 60.249 | 55.000 | 5.56 | 0.00 | 39.32 | 2.52 |
3466 | 4344 | 1.360551 | GATCGCGCTGGAGCTAGAA | 59.639 | 57.895 | 5.56 | 0.00 | 39.32 | 2.10 |
3467 | 4345 | 1.790090 | CTGATCGCGCTGGAGCTAGA | 61.790 | 60.000 | 5.56 | 0.00 | 39.32 | 2.43 |
3468 | 4346 | 1.371512 | CTGATCGCGCTGGAGCTAG | 60.372 | 63.158 | 5.56 | 0.00 | 39.32 | 3.42 |
3469 | 4347 | 2.724377 | CTGATCGCGCTGGAGCTA | 59.276 | 61.111 | 5.56 | 0.00 | 39.32 | 3.32 |
3470 | 4348 | 4.887987 | GCTGATCGCGCTGGAGCT | 62.888 | 66.667 | 5.56 | 0.00 | 39.32 | 4.09 |
3472 | 4350 | 3.804153 | ATGGCTGATCGCGCTGGAG | 62.804 | 63.158 | 5.56 | 0.00 | 40.44 | 3.86 |
3473 | 4351 | 3.797225 | GATGGCTGATCGCGCTGGA | 62.797 | 63.158 | 5.56 | 0.00 | 40.44 | 3.86 |
3474 | 4352 | 3.344215 | GATGGCTGATCGCGCTGG | 61.344 | 66.667 | 5.56 | 0.00 | 40.44 | 4.85 |
3475 | 4353 | 2.586914 | TGATGGCTGATCGCGCTG | 60.587 | 61.111 | 5.56 | 0.00 | 40.44 | 5.18 |
3476 | 4354 | 2.279985 | CTGATGGCTGATCGCGCT | 60.280 | 61.111 | 5.56 | 0.00 | 40.44 | 5.92 |
3477 | 4355 | 3.344215 | CCTGATGGCTGATCGCGC | 61.344 | 66.667 | 0.00 | 0.00 | 40.44 | 6.86 |
3487 | 4365 | 1.226802 | CTCGTGACGAGCCTGATGG | 60.227 | 63.158 | 22.72 | 0.00 | 46.75 | 3.51 |
3488 | 4366 | 4.391539 | CTCGTGACGAGCCTGATG | 57.608 | 61.111 | 22.72 | 0.00 | 46.75 | 3.07 |
3496 | 4374 | 2.094906 | CCTATGTGTTTCCTCGTGACGA | 60.095 | 50.000 | 7.70 | 7.70 | 0.00 | 4.20 |
3497 | 4375 | 2.259618 | CCTATGTGTTTCCTCGTGACG | 58.740 | 52.381 | 0.00 | 0.00 | 0.00 | 4.35 |
3498 | 4376 | 2.993899 | CACCTATGTGTTTCCTCGTGAC | 59.006 | 50.000 | 0.00 | 0.00 | 37.72 | 3.67 |
3499 | 4377 | 2.611971 | GCACCTATGTGTTTCCTCGTGA | 60.612 | 50.000 | 0.00 | 0.00 | 44.65 | 4.35 |
3500 | 4378 | 1.732259 | GCACCTATGTGTTTCCTCGTG | 59.268 | 52.381 | 0.00 | 0.00 | 44.65 | 4.35 |
3501 | 4379 | 1.671850 | CGCACCTATGTGTTTCCTCGT | 60.672 | 52.381 | 0.00 | 0.00 | 44.65 | 4.18 |
3502 | 4380 | 0.999406 | CGCACCTATGTGTTTCCTCG | 59.001 | 55.000 | 0.00 | 0.00 | 44.65 | 4.63 |
3503 | 4381 | 0.727398 | GCGCACCTATGTGTTTCCTC | 59.273 | 55.000 | 0.30 | 0.00 | 44.65 | 3.71 |
3504 | 4382 | 0.324943 | AGCGCACCTATGTGTTTCCT | 59.675 | 50.000 | 11.47 | 0.00 | 44.65 | 3.36 |
3505 | 4383 | 0.447801 | CAGCGCACCTATGTGTTTCC | 59.552 | 55.000 | 11.47 | 0.00 | 44.65 | 3.13 |
3506 | 4384 | 1.394917 | CTCAGCGCACCTATGTGTTTC | 59.605 | 52.381 | 11.47 | 0.00 | 44.65 | 2.78 |
3507 | 4385 | 1.270839 | ACTCAGCGCACCTATGTGTTT | 60.271 | 47.619 | 11.47 | 0.00 | 44.65 | 2.83 |
3508 | 4386 | 0.321671 | ACTCAGCGCACCTATGTGTT | 59.678 | 50.000 | 11.47 | 0.00 | 44.65 | 3.32 |
3509 | 4387 | 0.321671 | AACTCAGCGCACCTATGTGT | 59.678 | 50.000 | 11.47 | 2.46 | 44.65 | 3.72 |
3510 | 4388 | 0.723414 | CAACTCAGCGCACCTATGTG | 59.277 | 55.000 | 11.47 | 1.73 | 45.65 | 3.21 |
3511 | 4389 | 0.321671 | ACAACTCAGCGCACCTATGT | 59.678 | 50.000 | 11.47 | 6.23 | 0.00 | 2.29 |
3512 | 4390 | 1.129251 | CAACAACTCAGCGCACCTATG | 59.871 | 52.381 | 11.47 | 5.50 | 0.00 | 2.23 |
3513 | 4391 | 1.442769 | CAACAACTCAGCGCACCTAT | 58.557 | 50.000 | 11.47 | 0.00 | 0.00 | 2.57 |
3514 | 4392 | 0.602638 | CCAACAACTCAGCGCACCTA | 60.603 | 55.000 | 11.47 | 0.00 | 0.00 | 3.08 |
3515 | 4393 | 1.893808 | CCAACAACTCAGCGCACCT | 60.894 | 57.895 | 11.47 | 0.00 | 0.00 | 4.00 |
3516 | 4394 | 2.639286 | CCAACAACTCAGCGCACC | 59.361 | 61.111 | 11.47 | 0.00 | 0.00 | 5.01 |
3517 | 4395 | 2.050985 | GCCAACAACTCAGCGCAC | 60.051 | 61.111 | 11.47 | 0.00 | 0.00 | 5.34 |
3518 | 4396 | 1.823470 | AAGCCAACAACTCAGCGCA | 60.823 | 52.632 | 11.47 | 0.00 | 0.00 | 6.09 |
3519 | 4397 | 1.370900 | CAAGCCAACAACTCAGCGC | 60.371 | 57.895 | 0.00 | 0.00 | 0.00 | 5.92 |
3520 | 4398 | 0.040958 | GACAAGCCAACAACTCAGCG | 60.041 | 55.000 | 0.00 | 0.00 | 0.00 | 5.18 |
3521 | 4399 | 1.265365 | GAGACAAGCCAACAACTCAGC | 59.735 | 52.381 | 0.00 | 0.00 | 0.00 | 4.26 |
3522 | 4400 | 2.564771 | TGAGACAAGCCAACAACTCAG | 58.435 | 47.619 | 0.00 | 0.00 | 32.04 | 3.35 |
3523 | 4401 | 2.708216 | TGAGACAAGCCAACAACTCA | 57.292 | 45.000 | 0.00 | 0.00 | 33.06 | 3.41 |
3524 | 4402 | 4.515191 | TGTAATGAGACAAGCCAACAACTC | 59.485 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
3525 | 4403 | 4.460263 | TGTAATGAGACAAGCCAACAACT | 58.540 | 39.130 | 0.00 | 0.00 | 0.00 | 3.16 |
3526 | 4404 | 4.829064 | TGTAATGAGACAAGCCAACAAC | 57.171 | 40.909 | 0.00 | 0.00 | 0.00 | 3.32 |
3527 | 4405 | 7.392953 | TCAATATGTAATGAGACAAGCCAACAA | 59.607 | 33.333 | 0.00 | 0.00 | 31.83 | 2.83 |
3528 | 4406 | 6.883756 | TCAATATGTAATGAGACAAGCCAACA | 59.116 | 34.615 | 0.00 | 0.00 | 31.83 | 3.33 |
3529 | 4407 | 7.320443 | TCAATATGTAATGAGACAAGCCAAC | 57.680 | 36.000 | 0.00 | 0.00 | 31.83 | 3.77 |
3530 | 4408 | 7.392953 | TGTTCAATATGTAATGAGACAAGCCAA | 59.607 | 33.333 | 0.00 | 0.00 | 31.83 | 4.52 |
3531 | 4409 | 6.883756 | TGTTCAATATGTAATGAGACAAGCCA | 59.116 | 34.615 | 0.00 | 0.00 | 31.83 | 4.75 |
3532 | 4410 | 7.320443 | TGTTCAATATGTAATGAGACAAGCC | 57.680 | 36.000 | 0.00 | 0.00 | 31.83 | 4.35 |
3533 | 4411 | 8.236586 | TGTTGTTCAATATGTAATGAGACAAGC | 58.763 | 33.333 | 0.00 | 0.00 | 32.54 | 4.01 |
3550 | 4428 | 9.751542 | TCAACTTTTCTTAGTTTTGTTGTTCAA | 57.248 | 25.926 | 0.00 | 0.00 | 36.24 | 2.69 |
3551 | 4429 | 9.405587 | CTCAACTTTTCTTAGTTTTGTTGTTCA | 57.594 | 29.630 | 0.00 | 0.00 | 36.24 | 3.18 |
3552 | 4430 | 8.860128 | CCTCAACTTTTCTTAGTTTTGTTGTTC | 58.140 | 33.333 | 0.00 | 0.00 | 36.24 | 3.18 |
3553 | 4431 | 7.330946 | GCCTCAACTTTTCTTAGTTTTGTTGTT | 59.669 | 33.333 | 0.00 | 0.00 | 36.24 | 2.83 |
3554 | 4432 | 6.811665 | GCCTCAACTTTTCTTAGTTTTGTTGT | 59.188 | 34.615 | 0.00 | 0.00 | 36.24 | 3.32 |
3555 | 4433 | 7.035612 | AGCCTCAACTTTTCTTAGTTTTGTTG | 58.964 | 34.615 | 0.00 | 0.00 | 36.24 | 3.33 |
3556 | 4434 | 7.170393 | AGCCTCAACTTTTCTTAGTTTTGTT | 57.830 | 32.000 | 0.00 | 0.00 | 36.24 | 2.83 |
3557 | 4435 | 6.775594 | AGCCTCAACTTTTCTTAGTTTTGT | 57.224 | 33.333 | 0.00 | 0.00 | 36.24 | 2.83 |
3558 | 4436 | 6.858478 | GCTAGCCTCAACTTTTCTTAGTTTTG | 59.142 | 38.462 | 2.29 | 0.00 | 36.24 | 2.44 |
3559 | 4437 | 6.016192 | GGCTAGCCTCAACTTTTCTTAGTTTT | 60.016 | 38.462 | 27.17 | 0.00 | 36.24 | 2.43 |
3560 | 4438 | 5.473846 | GGCTAGCCTCAACTTTTCTTAGTTT | 59.526 | 40.000 | 27.17 | 0.00 | 36.24 | 2.66 |
3561 | 4439 | 5.004448 | GGCTAGCCTCAACTTTTCTTAGTT | 58.996 | 41.667 | 27.17 | 0.00 | 38.87 | 2.24 |
3562 | 4440 | 4.565861 | GGGCTAGCCTCAACTTTTCTTAGT | 60.566 | 45.833 | 32.18 | 0.00 | 36.10 | 2.24 |
3563 | 4441 | 3.942115 | GGGCTAGCCTCAACTTTTCTTAG | 59.058 | 47.826 | 32.18 | 0.00 | 36.10 | 2.18 |
3564 | 4442 | 3.587506 | AGGGCTAGCCTCAACTTTTCTTA | 59.412 | 43.478 | 32.18 | 0.00 | 36.10 | 2.10 |
3565 | 4443 | 2.376855 | AGGGCTAGCCTCAACTTTTCTT | 59.623 | 45.455 | 32.18 | 1.81 | 36.10 | 2.52 |
3566 | 4444 | 1.988846 | AGGGCTAGCCTCAACTTTTCT | 59.011 | 47.619 | 32.18 | 15.03 | 36.10 | 2.52 |
3567 | 4445 | 2.498644 | AGGGCTAGCCTCAACTTTTC | 57.501 | 50.000 | 32.18 | 12.91 | 36.10 | 2.29 |
3568 | 4446 | 2.108250 | TGAAGGGCTAGCCTCAACTTTT | 59.892 | 45.455 | 32.18 | 14.94 | 36.10 | 2.27 |
3569 | 4447 | 1.705186 | TGAAGGGCTAGCCTCAACTTT | 59.295 | 47.619 | 32.18 | 16.54 | 36.10 | 2.66 |
3570 | 4448 | 1.362224 | TGAAGGGCTAGCCTCAACTT | 58.638 | 50.000 | 32.18 | 25.18 | 36.10 | 2.66 |
3571 | 4449 | 1.362224 | TTGAAGGGCTAGCCTCAACT | 58.638 | 50.000 | 32.18 | 18.38 | 36.10 | 3.16 |
3572 | 4450 | 2.426842 | ATTGAAGGGCTAGCCTCAAC | 57.573 | 50.000 | 30.43 | 20.95 | 34.52 | 3.18 |
3573 | 4451 | 3.356290 | GAAATTGAAGGGCTAGCCTCAA | 58.644 | 45.455 | 30.12 | 30.12 | 35.62 | 3.02 |
3574 | 4452 | 2.680805 | CGAAATTGAAGGGCTAGCCTCA | 60.681 | 50.000 | 32.18 | 25.24 | 36.10 | 3.86 |
3575 | 4453 | 1.943340 | CGAAATTGAAGGGCTAGCCTC | 59.057 | 52.381 | 32.18 | 22.95 | 36.10 | 4.70 |
3576 | 4454 | 1.559682 | TCGAAATTGAAGGGCTAGCCT | 59.440 | 47.619 | 32.18 | 14.96 | 36.10 | 4.58 |
3577 | 4455 | 1.943340 | CTCGAAATTGAAGGGCTAGCC | 59.057 | 52.381 | 26.55 | 26.55 | 0.00 | 3.93 |
3578 | 4456 | 2.906354 | TCTCGAAATTGAAGGGCTAGC | 58.094 | 47.619 | 6.04 | 6.04 | 0.00 | 3.42 |
3579 | 4457 | 4.759782 | TCTTCTCGAAATTGAAGGGCTAG | 58.240 | 43.478 | 11.05 | 0.00 | 39.85 | 3.42 |
3580 | 4458 | 4.819105 | TCTTCTCGAAATTGAAGGGCTA | 57.181 | 40.909 | 11.05 | 0.00 | 39.85 | 3.93 |
3581 | 4459 | 3.703001 | TCTTCTCGAAATTGAAGGGCT | 57.297 | 42.857 | 11.05 | 0.00 | 39.85 | 5.19 |
3582 | 4460 | 4.439289 | CCATTCTTCTCGAAATTGAAGGGC | 60.439 | 45.833 | 11.05 | 0.00 | 39.85 | 5.19 |
3583 | 4461 | 4.096984 | CCCATTCTTCTCGAAATTGAAGGG | 59.903 | 45.833 | 11.05 | 11.22 | 39.85 | 3.95 |
3584 | 4462 | 4.439289 | GCCCATTCTTCTCGAAATTGAAGG | 60.439 | 45.833 | 11.05 | 4.28 | 39.85 | 3.46 |
3585 | 4463 | 4.666237 | GCCCATTCTTCTCGAAATTGAAG | 58.334 | 43.478 | 5.93 | 5.93 | 40.53 | 3.02 |
3586 | 4464 | 3.126858 | CGCCCATTCTTCTCGAAATTGAA | 59.873 | 43.478 | 0.00 | 0.00 | 34.79 | 2.69 |
3587 | 4465 | 2.677836 | CGCCCATTCTTCTCGAAATTGA | 59.322 | 45.455 | 0.00 | 0.00 | 34.79 | 2.57 |
3588 | 4466 | 2.792542 | GCGCCCATTCTTCTCGAAATTG | 60.793 | 50.000 | 0.00 | 0.00 | 34.79 | 2.32 |
3589 | 4467 | 1.401905 | GCGCCCATTCTTCTCGAAATT | 59.598 | 47.619 | 0.00 | 0.00 | 34.79 | 1.82 |
3590 | 4468 | 1.017387 | GCGCCCATTCTTCTCGAAAT | 58.983 | 50.000 | 0.00 | 0.00 | 34.79 | 2.17 |
3591 | 4469 | 0.036388 | AGCGCCCATTCTTCTCGAAA | 60.036 | 50.000 | 2.29 | 0.00 | 34.79 | 3.46 |
3592 | 4470 | 0.821517 | TAGCGCCCATTCTTCTCGAA | 59.178 | 50.000 | 2.29 | 0.00 | 35.78 | 3.71 |
3593 | 4471 | 1.040646 | ATAGCGCCCATTCTTCTCGA | 58.959 | 50.000 | 2.29 | 0.00 | 0.00 | 4.04 |
3594 | 4472 | 2.724977 | TATAGCGCCCATTCTTCTCG | 57.275 | 50.000 | 2.29 | 0.00 | 0.00 | 4.04 |
3595 | 4473 | 3.728845 | TGTTATAGCGCCCATTCTTCTC | 58.271 | 45.455 | 2.29 | 0.00 | 0.00 | 2.87 |
3596 | 4474 | 3.388024 | TCTGTTATAGCGCCCATTCTTCT | 59.612 | 43.478 | 2.29 | 0.00 | 0.00 | 2.85 |
3597 | 4475 | 3.728845 | TCTGTTATAGCGCCCATTCTTC | 58.271 | 45.455 | 2.29 | 0.00 | 0.00 | 2.87 |
3598 | 4476 | 3.733337 | CTCTGTTATAGCGCCCATTCTT | 58.267 | 45.455 | 2.29 | 0.00 | 0.00 | 2.52 |
3599 | 4477 | 2.548920 | GCTCTGTTATAGCGCCCATTCT | 60.549 | 50.000 | 2.29 | 0.00 | 30.88 | 2.40 |
3600 | 4478 | 1.801178 | GCTCTGTTATAGCGCCCATTC | 59.199 | 52.381 | 2.29 | 0.00 | 30.88 | 2.67 |
3601 | 4479 | 1.884235 | GCTCTGTTATAGCGCCCATT | 58.116 | 50.000 | 2.29 | 0.00 | 30.88 | 3.16 |
3602 | 4480 | 3.614399 | GCTCTGTTATAGCGCCCAT | 57.386 | 52.632 | 2.29 | 0.00 | 30.88 | 4.00 |
3608 | 4486 | 3.861569 | ATTTTCGCGCTCTGTTATAGC | 57.138 | 42.857 | 5.56 | 0.00 | 36.60 | 2.97 |
3609 | 4487 | 5.143916 | ACAATTTTCGCGCTCTGTTATAG | 57.856 | 39.130 | 5.56 | 0.00 | 0.00 | 1.31 |
3610 | 4488 | 4.627900 | TGACAATTTTCGCGCTCTGTTATA | 59.372 | 37.500 | 5.56 | 0.00 | 0.00 | 0.98 |
3611 | 4489 | 3.435327 | TGACAATTTTCGCGCTCTGTTAT | 59.565 | 39.130 | 5.56 | 0.00 | 0.00 | 1.89 |
3612 | 4490 | 2.803386 | TGACAATTTTCGCGCTCTGTTA | 59.197 | 40.909 | 5.56 | 0.00 | 0.00 | 2.41 |
3613 | 4491 | 1.601903 | TGACAATTTTCGCGCTCTGTT | 59.398 | 42.857 | 5.56 | 0.00 | 0.00 | 3.16 |
3614 | 4492 | 1.069906 | GTGACAATTTTCGCGCTCTGT | 60.070 | 47.619 | 5.56 | 0.00 | 0.00 | 3.41 |
3615 | 4493 | 1.595609 | GTGACAATTTTCGCGCTCTG | 58.404 | 50.000 | 5.56 | 0.00 | 0.00 | 3.35 |
3616 | 4494 | 0.163788 | CGTGACAATTTTCGCGCTCT | 59.836 | 50.000 | 13.90 | 0.00 | 42.10 | 4.09 |
3617 | 4495 | 0.162933 | TCGTGACAATTTTCGCGCTC | 59.837 | 50.000 | 19.87 | 0.00 | 46.70 | 5.03 |
3618 | 4496 | 0.163788 | CTCGTGACAATTTTCGCGCT | 59.836 | 50.000 | 19.87 | 0.00 | 46.70 | 5.92 |
3619 | 4497 | 0.110823 | ACTCGTGACAATTTTCGCGC | 60.111 | 50.000 | 19.87 | 0.00 | 46.70 | 6.86 |
3621 | 4499 | 2.032377 | TGGAACTCGTGACAATTTTCGC | 60.032 | 45.455 | 0.00 | 0.00 | 0.00 | 4.70 |
3622 | 4500 | 3.493129 | TCTGGAACTCGTGACAATTTTCG | 59.507 | 43.478 | 0.00 | 0.00 | 0.00 | 3.46 |
3623 | 4501 | 4.511826 | ACTCTGGAACTCGTGACAATTTTC | 59.488 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
3624 | 4502 | 4.451900 | ACTCTGGAACTCGTGACAATTTT | 58.548 | 39.130 | 0.00 | 0.00 | 0.00 | 1.82 |
3625 | 4503 | 4.073293 | ACTCTGGAACTCGTGACAATTT | 57.927 | 40.909 | 0.00 | 0.00 | 0.00 | 1.82 |
3626 | 4504 | 3.753294 | ACTCTGGAACTCGTGACAATT | 57.247 | 42.857 | 0.00 | 0.00 | 0.00 | 2.32 |
3627 | 4505 | 3.181465 | ACAACTCTGGAACTCGTGACAAT | 60.181 | 43.478 | 0.00 | 0.00 | 0.00 | 2.71 |
3628 | 4506 | 2.167693 | ACAACTCTGGAACTCGTGACAA | 59.832 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
3629 | 4507 | 1.754803 | ACAACTCTGGAACTCGTGACA | 59.245 | 47.619 | 0.00 | 0.00 | 0.00 | 3.58 |
3630 | 4508 | 2.510768 | ACAACTCTGGAACTCGTGAC | 57.489 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
3631 | 4509 | 2.295349 | GGTACAACTCTGGAACTCGTGA | 59.705 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
3632 | 4510 | 2.035449 | TGGTACAACTCTGGAACTCGTG | 59.965 | 50.000 | 0.00 | 0.00 | 31.92 | 4.35 |
3633 | 4511 | 2.313317 | TGGTACAACTCTGGAACTCGT | 58.687 | 47.619 | 0.00 | 0.00 | 31.92 | 4.18 |
3647 | 4525 | 3.788227 | AGATTGCTTGGAGTTGGTACA | 57.212 | 42.857 | 0.00 | 0.00 | 0.00 | 2.90 |
3648 | 4526 | 4.833390 | AGTAGATTGCTTGGAGTTGGTAC | 58.167 | 43.478 | 0.00 | 0.00 | 0.00 | 3.34 |
3649 | 4527 | 5.012664 | TGAAGTAGATTGCTTGGAGTTGGTA | 59.987 | 40.000 | 0.00 | 0.00 | 0.00 | 3.25 |
3650 | 4528 | 4.202461 | TGAAGTAGATTGCTTGGAGTTGGT | 60.202 | 41.667 | 0.00 | 0.00 | 0.00 | 3.67 |
3651 | 4529 | 4.326826 | TGAAGTAGATTGCTTGGAGTTGG | 58.673 | 43.478 | 0.00 | 0.00 | 0.00 | 3.77 |
3652 | 4530 | 5.947228 | TTGAAGTAGATTGCTTGGAGTTG | 57.053 | 39.130 | 0.00 | 0.00 | 0.00 | 3.16 |
3653 | 4531 | 5.827797 | TGTTTGAAGTAGATTGCTTGGAGTT | 59.172 | 36.000 | 0.00 | 0.00 | 0.00 | 3.01 |
3654 | 4532 | 5.239525 | GTGTTTGAAGTAGATTGCTTGGAGT | 59.760 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
3655 | 4533 | 5.335191 | GGTGTTTGAAGTAGATTGCTTGGAG | 60.335 | 44.000 | 0.00 | 0.00 | 0.00 | 3.86 |
3656 | 4534 | 4.518970 | GGTGTTTGAAGTAGATTGCTTGGA | 59.481 | 41.667 | 0.00 | 0.00 | 0.00 | 3.53 |
3657 | 4535 | 4.278170 | TGGTGTTTGAAGTAGATTGCTTGG | 59.722 | 41.667 | 0.00 | 0.00 | 0.00 | 3.61 |
3658 | 4536 | 5.009010 | AGTGGTGTTTGAAGTAGATTGCTTG | 59.991 | 40.000 | 0.00 | 0.00 | 0.00 | 4.01 |
3659 | 4537 | 5.133221 | AGTGGTGTTTGAAGTAGATTGCTT | 58.867 | 37.500 | 0.00 | 0.00 | 0.00 | 3.91 |
3660 | 4538 | 4.718961 | AGTGGTGTTTGAAGTAGATTGCT | 58.281 | 39.130 | 0.00 | 0.00 | 0.00 | 3.91 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.