Multiple sequence alignment - TraesCS3B01G243200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G243200 chr3B 100.000 4651 0 0 1 4651 384334426 384329776 0.000000e+00 8589.0
1 TraesCS3B01G243200 chr3B 97.561 82 2 0 4156 4237 384330184 384330103 1.740000e-29 141.0
2 TraesCS3B01G243200 chr3A 93.731 3334 144 22 810 4123 384201125 384197837 0.000000e+00 4939.0
3 TraesCS3B01G243200 chr3D 95.415 1963 76 7 4 1966 291232696 291230748 0.000000e+00 3114.0
4 TraesCS3B01G243200 chr3D 92.090 2048 129 17 2087 4123 291230613 291228588 0.000000e+00 2854.0
5 TraesCS3B01G243200 chr3D 86.811 417 30 15 4252 4651 298577749 298577341 4.270000e-120 442.0
6 TraesCS3B01G243200 chr3D 90.244 82 5 1 1966 2047 291230692 291230614 2.290000e-18 104.0
7 TraesCS3B01G243200 chr1A 95.169 414 15 4 4243 4651 494389857 494389444 0.000000e+00 649.0
8 TraesCS3B01G243200 chr1A 96.552 116 4 0 4122 4237 494389891 494389776 4.750000e-45 193.0
9 TraesCS3B01G243200 chr1A 87.037 54 6 1 549 602 546238527 546238579 5.030000e-05 60.2
10 TraesCS3B01G243200 chr1B 93.990 416 18 6 4243 4651 675273872 675273457 1.420000e-174 623.0
11 TraesCS3B01G243200 chr1B 93.947 413 18 5 4243 4651 486350678 486351087 6.610000e-173 617.0
12 TraesCS3B01G243200 chr1B 79.798 396 60 14 3537 3925 26125041 26125423 2.130000e-68 270.0
13 TraesCS3B01G243200 chr1B 97.414 116 3 0 4122 4237 675273906 675273791 1.020000e-46 198.0
14 TraesCS3B01G243200 chr1B 94.783 115 6 0 4123 4237 486350645 486350759 3.700000e-41 180.0
15 TraesCS3B01G243200 chr7B 92.771 415 22 6 4243 4651 351923114 351922702 1.110000e-165 593.0
16 TraesCS3B01G243200 chr7B 93.966 116 7 0 4122 4237 351923148 351923033 4.780000e-40 176.0
17 TraesCS3B01G243200 chr5B 91.525 413 28 5 4243 4651 679046899 679047308 3.140000e-156 562.0
18 TraesCS3B01G243200 chr5B 93.162 117 8 0 4121 4237 679046864 679046980 6.190000e-39 172.0
19 TraesCS3B01G243200 chr4B 90.617 405 29 7 4252 4651 12612737 12612337 3.190000e-146 529.0
20 TraesCS3B01G243200 chr5A 86.649 382 40 8 4276 4651 113585511 113585887 3.350000e-111 412.0
21 TraesCS3B01G243200 chr2A 84.892 417 34 18 4252 4646 738802378 738801969 1.210000e-105 394.0
22 TraesCS3B01G243200 chr4A 81.818 99 13 4 504 600 620879328 620879233 1.390000e-10 78.7
23 TraesCS3B01G243200 chr2B 93.478 46 3 0 551 596 417254209 417254164 8.350000e-08 69.4
24 TraesCS3B01G243200 chr5D 89.362 47 3 1 551 597 345038717 345038673 1.810000e-04 58.4
25 TraesCS3B01G243200 chr7A 87.234 47 6 0 551 597 547642737 547642691 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G243200 chr3B 384329776 384334426 4650 True 8589 8589 100.000 1 4651 1 chr3B.!!$R1 4650
1 TraesCS3B01G243200 chr3A 384197837 384201125 3288 True 4939 4939 93.731 810 4123 1 chr3A.!!$R1 3313
2 TraesCS3B01G243200 chr3D 291228588 291232696 4108 True 2024 3114 92.583 4 4123 3 chr3D.!!$R2 4119

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
893 894 0.698818 ACATCACCTTGTCTTCCCCC 59.301 55.000 0.0 0.0 0.0 5.40 F
911 912 1.192146 CCACTCCACTCTCCCCGAAA 61.192 60.000 0.0 0.0 0.0 3.46 F
1034 1038 1.374758 CACTTCAGACGCTCACCCC 60.375 63.158 0.0 0.0 0.0 4.95 F
2555 2616 1.079127 CTGTCCAGCTTACCACGGG 60.079 63.158 0.0 0.0 0.0 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2396 2457 2.209838 ACAAGATCGCACATAGGTCG 57.790 50.000 0.0 0.0 0.00 4.79 R
2510 2571 2.366533 CTGCTGCCAACATCAGAGATT 58.633 47.619 0.0 0.0 41.58 2.40 R
2731 2793 3.055530 CAGCCAACAGATTCTCAGTACCT 60.056 47.826 0.0 0.0 0.00 3.08 R
4507 4585 0.036306 CAAACTGCTACGGGGTCCTT 59.964 55.000 0.0 0.0 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.986708 TGGCCCGCCCAAAGAACC 62.987 66.667 0.00 0.00 41.82 3.62
46 47 2.016905 TCTTAGAGATAGCAGGGGGC 57.983 55.000 0.00 0.00 45.30 5.80
59 60 1.134431 CAGGGGGCCATTTTATTGCAC 60.134 52.381 4.39 0.00 0.00 4.57
60 61 3.778619 GGGGCCATTTTATTGCACC 57.221 52.632 4.39 0.00 42.18 5.01
87 88 8.894768 AATTGTGTCTTCTTCCTATATGCTAC 57.105 34.615 0.00 0.00 0.00 3.58
88 89 6.406692 TGTGTCTTCTTCCTATATGCTACC 57.593 41.667 0.00 0.00 0.00 3.18
108 109 3.236816 CCGATGTGTTCACAATTGAAGC 58.763 45.455 13.59 2.60 42.60 3.86
114 115 4.398988 TGTGTTCACAATTGAAGCTCTTGT 59.601 37.500 13.59 0.00 42.60 3.16
128 129 3.881688 AGCTCTTGTCATGCATAATGGAC 59.118 43.478 0.00 3.16 36.86 4.02
190 191 4.214332 GCCGAATCTGTTTCTCAAGAAGTT 59.786 41.667 0.00 0.00 35.21 2.66
191 192 5.408604 GCCGAATCTGTTTCTCAAGAAGTTA 59.591 40.000 0.00 0.00 35.21 2.24
241 242 1.284785 TGGGACCCATTGAGGACAATC 59.715 52.381 9.95 0.00 43.76 2.67
266 267 8.833493 TCTATGTTGATTGTTCTCATATTGCAG 58.167 33.333 0.00 0.00 0.00 4.41
278 279 4.279982 TCATATTGCAGAAGGAATGCCAA 58.720 39.130 0.00 0.00 43.18 4.52
281 282 3.598019 TTGCAGAAGGAATGCCAATTC 57.402 42.857 0.00 0.00 43.18 2.17
282 283 2.811410 TGCAGAAGGAATGCCAATTCT 58.189 42.857 0.00 0.00 43.18 2.40
285 286 3.428589 GCAGAAGGAATGCCAATTCTGTC 60.429 47.826 18.59 10.29 43.35 3.51
291 292 1.463674 ATGCCAATTCTGTCGTTCCC 58.536 50.000 0.00 0.00 0.00 3.97
295 296 1.337823 CCAATTCTGTCGTTCCCGAGT 60.338 52.381 0.00 0.00 45.26 4.18
303 304 2.557924 TGTCGTTCCCGAGTTAGCTAAA 59.442 45.455 7.99 0.00 45.26 1.85
315 316 9.321562 CCCGAGTTAGCTAAATTTAGTTATCAA 57.678 33.333 22.94 8.83 33.32 2.57
353 354 7.147811 CCCTCCTAGTGCTATATTTAGACCATC 60.148 44.444 0.00 0.00 0.00 3.51
413 414 2.435372 TGCCACAATGGTAATCCCTC 57.565 50.000 0.00 0.00 40.46 4.30
485 486 2.528564 CCTCCTCATCTCATCTCCTCC 58.471 57.143 0.00 0.00 0.00 4.30
486 487 2.158340 CCTCCTCATCTCATCTCCTCCA 60.158 54.545 0.00 0.00 0.00 3.86
490 491 4.973856 TCCTCATCTCATCTCCTCCATTTT 59.026 41.667 0.00 0.00 0.00 1.82
502 503 5.243730 TCTCCTCCATTTTGGTTTCATTGAC 59.756 40.000 0.00 0.00 39.03 3.18
509 510 6.767423 CCATTTTGGTTTCATTGACTTTCCTT 59.233 34.615 0.00 0.00 31.35 3.36
617 618 9.206870 CAATAAATATTGATTTAATTGGCCGCT 57.793 29.630 7.26 0.00 44.40 5.52
630 631 1.816224 TGGCCGCTAAAGTCCATTTTC 59.184 47.619 0.00 0.00 32.01 2.29
636 637 5.679906 CCGCTAAAGTCCATTTTCGATATG 58.320 41.667 0.00 0.00 31.41 1.78
698 699 8.195436 GTGACTGAGTATAAAGTACTTATGCCA 58.805 37.037 8.92 2.40 34.15 4.92
707 708 1.129811 GTACTTATGCCACCGTTGCAC 59.870 52.381 0.00 0.00 42.38 4.57
824 825 1.142870 GGCATGCCTTCCTACCATGTA 59.857 52.381 29.98 0.00 38.79 2.29
863 864 2.308866 GCCCAATACCTATAGCCCACAT 59.691 50.000 0.00 0.00 0.00 3.21
893 894 0.698818 ACATCACCTTGTCTTCCCCC 59.301 55.000 0.00 0.00 0.00 5.40
911 912 1.192146 CCACTCCACTCTCCCCGAAA 61.192 60.000 0.00 0.00 0.00 3.46
932 933 1.439353 CCCAAAGACGGCCATCATCG 61.439 60.000 0.00 0.00 0.00 3.84
961 965 2.990479 CCTTCTTCCCACCTCCCG 59.010 66.667 0.00 0.00 0.00 5.14
1034 1038 1.374758 CACTTCAGACGCTCACCCC 60.375 63.158 0.00 0.00 0.00 4.95
1110 1114 2.815503 TCACAACATCGACGAACTCCTA 59.184 45.455 0.00 0.00 0.00 2.94
1392 1396 1.966451 CCAGGTTTGGTCCGAGCAC 60.966 63.158 0.00 0.00 39.79 4.40
1507 1511 5.878669 GGGTCGACATTTTCTACAATAACCT 59.121 40.000 18.91 0.00 0.00 3.50
1653 1657 8.250143 AGAAAACCATTGAGGAACAAATAACT 57.750 30.769 0.00 0.00 42.03 2.24
1694 1698 5.357742 AGGTGCCTTTGATTGAAAAGTTT 57.642 34.783 0.00 0.00 35.73 2.66
1788 1792 7.942341 ACCTCAAGTCAAGACAATAAAATGGTA 59.058 33.333 2.72 0.00 0.00 3.25
1929 1933 7.303182 TGTGTATTCTAATGGACTATCCCTG 57.697 40.000 0.00 0.00 35.03 4.45
2029 2089 1.378531 TGAAAAGTCTGTTGCACGCT 58.621 45.000 0.00 0.00 0.00 5.07
2059 2119 9.852091 ATTATCTTGAAAGACTTGCAATTTCTC 57.148 29.630 19.47 7.61 37.98 2.87
2093 2153 5.104402 TGAATCAGAGCATCCATTCCAAGTA 60.104 40.000 0.00 0.00 35.21 2.24
2154 2215 2.862921 GCCGAGGAGGATCGATTAACAC 60.863 54.545 0.00 0.00 45.56 3.32
2261 2322 6.782494 TGTTAGCATGATACTAGATGAAGGGA 59.218 38.462 0.00 0.00 0.00 4.20
2264 2325 5.784390 AGCATGATACTAGATGAAGGGATGT 59.216 40.000 0.00 0.00 0.00 3.06
2299 2360 2.603075 TCCATTTCCCCTTGGTTCTG 57.397 50.000 0.00 0.00 34.48 3.02
2435 2496 7.795047 TCTTGTACAATGTGGATCAGACATAT 58.205 34.615 9.13 5.10 32.74 1.78
2461 2522 3.503365 TCCTTCGTTGAGGTAGGAGAAA 58.497 45.455 0.00 0.00 38.04 2.52
2555 2616 1.079127 CTGTCCAGCTTACCACGGG 60.079 63.158 0.00 0.00 0.00 5.28
2615 2676 6.442112 GTTTTCTAGCTCACTGCAAGAAATT 58.558 36.000 7.99 0.00 45.94 1.82
2624 2685 2.744202 ACTGCAAGAAATTAGCCAGACG 59.256 45.455 0.00 0.00 37.43 4.18
2681 2742 5.657302 CGACCCTATATGGCTCTTTATAGGT 59.343 44.000 12.62 0.00 42.98 3.08
2731 2793 6.854091 TGGATTTGTGAATCAATGGAATGA 57.146 33.333 2.05 0.00 42.82 2.57
2846 2908 1.807573 GAGAGCACCTTCTTCGGCG 60.808 63.158 0.00 0.00 0.00 6.46
2927 2989 7.896811 TCAGGAAAGGTATGTAGCATGTATAG 58.103 38.462 0.00 0.00 0.00 1.31
2928 2990 7.509318 TCAGGAAAGGTATGTAGCATGTATAGT 59.491 37.037 0.00 0.00 0.00 2.12
2929 2991 7.600375 CAGGAAAGGTATGTAGCATGTATAGTG 59.400 40.741 0.00 0.00 0.00 2.74
2930 2992 7.290248 AGGAAAGGTATGTAGCATGTATAGTGT 59.710 37.037 0.00 0.00 0.00 3.55
2931 2993 8.582437 GGAAAGGTATGTAGCATGTATAGTGTA 58.418 37.037 0.00 0.00 0.00 2.90
2955 3017 9.875691 GTATACCAATGATGCATCTATCTTACA 57.124 33.333 26.32 5.59 0.00 2.41
2981 3043 7.938140 AGCACTAACTTGGAATGCTAAATTA 57.062 32.000 0.00 0.00 44.59 1.40
3017 3079 6.711645 CAGATTTTTCCACATCAAAATTGGGT 59.288 34.615 0.00 0.00 33.62 4.51
3023 3091 1.278537 CATCAAAATTGGGTGGGCCT 58.721 50.000 4.53 0.00 34.45 5.19
3061 3129 9.897744 GAAACAATTTCTTCATCATGTCAGTTA 57.102 29.630 0.00 0.00 36.73 2.24
3147 3215 5.184892 AGAAGGCCTCATTTATGTTGAGT 57.815 39.130 5.23 0.00 39.16 3.41
3151 3219 7.669722 AGAAGGCCTCATTTATGTTGAGTAAAA 59.330 33.333 5.23 0.00 39.16 1.52
3218 3286 5.973565 GCTGTGTTTATCATTTCATACTGGC 59.026 40.000 0.00 0.00 0.00 4.85
3219 3287 6.449635 TGTGTTTATCATTTCATACTGGCC 57.550 37.500 0.00 0.00 0.00 5.36
3242 3310 6.586344 CCAGTGGATCAGTTATTCAGTGTAT 58.414 40.000 1.68 0.00 41.41 2.29
3245 3313 5.049828 TGGATCAGTTATTCAGTGTATGCG 58.950 41.667 0.00 0.00 0.00 4.73
3253 3321 1.438651 TCAGTGTATGCGGAACTTGC 58.561 50.000 0.00 0.00 0.00 4.01
3289 3357 0.955428 TGGTCAACGAGCATTGCCTC 60.955 55.000 4.70 1.77 35.04 4.70
3296 3364 2.283298 ACGAGCATTGCCTCTGTTATG 58.717 47.619 4.70 0.00 0.00 1.90
3301 3369 5.008019 CGAGCATTGCCTCTGTTATGTTATT 59.992 40.000 4.70 0.00 0.00 1.40
3302 3370 6.202762 CGAGCATTGCCTCTGTTATGTTATTA 59.797 38.462 4.70 0.00 0.00 0.98
3329 3397 5.932303 TGTACTGTTCTAGGACTTTTGCATC 59.068 40.000 2.07 0.00 41.17 3.91
3330 3398 4.973168 ACTGTTCTAGGACTTTTGCATCA 58.027 39.130 2.07 0.00 0.00 3.07
3336 3404 0.247460 GGACTTTTGCATCAAGCCCC 59.753 55.000 6.15 4.83 44.83 5.80
3401 3470 9.639563 TTGTTCATAATAAATCCAGGCTAATGA 57.360 29.630 0.00 0.00 0.00 2.57
3485 3554 1.626356 GCCCTGCTGACATAGTCCCA 61.626 60.000 0.00 0.00 0.00 4.37
3659 3734 9.799106 AAAGAGAAATCAAAATAACTCTCTCCA 57.201 29.630 0.00 0.00 38.90 3.86
3664 3739 9.436957 GAAATCAAAATAACTCTCTCCACTGTA 57.563 33.333 0.00 0.00 0.00 2.74
3836 3911 3.914426 AAGAATACGGCAGGAATGTCT 57.086 42.857 0.00 0.00 0.00 3.41
3916 3991 4.584029 AGCGTTTATCTGTTGACAATCG 57.416 40.909 0.00 0.00 0.00 3.34
3922 3997 3.634397 ATCTGTTGACAATCGGATGGT 57.366 42.857 0.00 0.00 0.00 3.55
3923 3998 3.417069 TCTGTTGACAATCGGATGGTT 57.583 42.857 0.00 0.00 0.00 3.67
3961 4036 7.331193 AGGATTGTGTTACGTGATTTTCTAGTC 59.669 37.037 0.00 0.00 0.00 2.59
4010 4087 4.453478 TGTCATGATCTTGACTGTTCTTGC 59.547 41.667 30.70 11.35 45.07 4.01
4011 4088 4.694509 GTCATGATCTTGACTGTTCTTGCT 59.305 41.667 26.44 0.00 42.22 3.91
4055 4133 4.935352 TGCACCAATATTGCTAAATCCC 57.065 40.909 10.11 0.00 40.86 3.85
4093 4171 2.238144 ACACTGATGCATCCAAGTAGCT 59.762 45.455 23.67 5.11 0.00 3.32
4123 4201 7.066284 ACTCACAAATCTGCATAACTATCAACC 59.934 37.037 0.00 0.00 0.00 3.77
4124 4202 6.318648 TCACAAATCTGCATAACTATCAACCC 59.681 38.462 0.00 0.00 0.00 4.11
4125 4203 6.095300 CACAAATCTGCATAACTATCAACCCA 59.905 38.462 0.00 0.00 0.00 4.51
4126 4204 6.663093 ACAAATCTGCATAACTATCAACCCAA 59.337 34.615 0.00 0.00 0.00 4.12
4127 4205 7.342799 ACAAATCTGCATAACTATCAACCCAAT 59.657 33.333 0.00 0.00 0.00 3.16
4128 4206 7.516198 AATCTGCATAACTATCAACCCAATC 57.484 36.000 0.00 0.00 0.00 2.67
4129 4207 5.056480 TCTGCATAACTATCAACCCAATCG 58.944 41.667 0.00 0.00 0.00 3.34
4130 4208 3.563808 TGCATAACTATCAACCCAATCGC 59.436 43.478 0.00 0.00 0.00 4.58
4131 4209 3.815401 GCATAACTATCAACCCAATCGCT 59.185 43.478 0.00 0.00 0.00 4.93
4132 4210 4.319766 GCATAACTATCAACCCAATCGCTG 60.320 45.833 0.00 0.00 0.00 5.18
4133 4211 3.350219 AACTATCAACCCAATCGCTGT 57.650 42.857 0.00 0.00 0.00 4.40
4134 4212 2.906354 ACTATCAACCCAATCGCTGTC 58.094 47.619 0.00 0.00 0.00 3.51
4135 4213 2.501723 ACTATCAACCCAATCGCTGTCT 59.498 45.455 0.00 0.00 0.00 3.41
4136 4214 3.704566 ACTATCAACCCAATCGCTGTCTA 59.295 43.478 0.00 0.00 0.00 2.59
4137 4215 3.627395 ATCAACCCAATCGCTGTCTAA 57.373 42.857 0.00 0.00 0.00 2.10
4138 4216 2.695359 TCAACCCAATCGCTGTCTAAC 58.305 47.619 0.00 0.00 0.00 2.34
4139 4217 1.393539 CAACCCAATCGCTGTCTAACG 59.606 52.381 0.00 0.00 0.00 3.18
4140 4218 0.892755 ACCCAATCGCTGTCTAACGA 59.107 50.000 0.00 0.00 43.33 3.85
4141 4219 1.135083 ACCCAATCGCTGTCTAACGAG 60.135 52.381 0.00 0.00 42.31 4.18
4142 4220 0.924090 CCAATCGCTGTCTAACGAGC 59.076 55.000 0.00 0.00 42.31 5.03
4143 4221 1.629013 CAATCGCTGTCTAACGAGCA 58.371 50.000 0.00 0.00 42.31 4.26
4144 4222 1.321743 CAATCGCTGTCTAACGAGCAC 59.678 52.381 0.00 0.00 42.31 4.40
4145 4223 0.523546 ATCGCTGTCTAACGAGCACG 60.524 55.000 0.76 0.76 42.31 5.34
4146 4224 2.778997 CGCTGTCTAACGAGCACGC 61.779 63.158 2.62 0.00 43.96 5.34
4147 4225 2.778997 GCTGTCTAACGAGCACGCG 61.779 63.158 3.53 3.53 43.96 6.01
4148 4226 2.778997 CTGTCTAACGAGCACGCGC 61.779 63.158 5.73 0.00 43.96 6.86
4149 4227 3.887327 GTCTAACGAGCACGCGCG 61.887 66.667 30.96 30.96 45.49 6.86
4150 4228 4.092652 TCTAACGAGCACGCGCGA 62.093 61.111 39.36 10.55 45.49 5.87
4151 4229 2.949678 CTAACGAGCACGCGCGAT 60.950 61.111 39.36 21.86 45.49 4.58
4152 4230 2.906719 CTAACGAGCACGCGCGATC 61.907 63.158 39.36 27.26 45.49 3.69
4165 4243 4.637489 CGATCCAGCGCTCCCGAG 62.637 72.222 7.13 0.00 36.29 4.63
4188 4266 2.813908 GCACCACGACCGTCCATC 60.814 66.667 0.00 0.00 0.00 3.51
4189 4267 2.506217 CACCACGACCGTCCATCG 60.506 66.667 0.00 0.00 45.17 3.84
4190 4268 4.430765 ACCACGACCGTCCATCGC 62.431 66.667 0.00 0.00 43.46 4.58
4236 4314 3.601685 CAGGTGGGCGGCGTTTTT 61.602 61.111 9.37 0.00 0.00 1.94
4237 4315 3.601685 AGGTGGGCGGCGTTTTTG 61.602 61.111 9.37 0.00 0.00 2.44
4238 4316 4.656117 GGTGGGCGGCGTTTTTGG 62.656 66.667 9.37 0.00 0.00 3.28
4239 4317 3.597728 GTGGGCGGCGTTTTTGGA 61.598 61.111 9.37 0.00 0.00 3.53
4240 4318 2.598985 TGGGCGGCGTTTTTGGAT 60.599 55.556 9.37 0.00 0.00 3.41
4241 4319 2.180769 GGGCGGCGTTTTTGGATC 59.819 61.111 9.37 0.00 0.00 3.36
4242 4320 2.202427 GGCGGCGTTTTTGGATCG 60.202 61.111 9.37 0.00 0.00 3.69
4246 4324 2.175811 GCGTTTTTGGATCGCGCT 59.824 55.556 5.56 0.00 44.00 5.92
4247 4325 1.863446 GCGTTTTTGGATCGCGCTC 60.863 57.895 5.56 0.00 44.00 5.03
4248 4326 1.226018 CGTTTTTGGATCGCGCTCC 60.226 57.895 21.78 21.78 35.74 4.70
4249 4327 1.136774 GTTTTTGGATCGCGCTCCC 59.863 57.895 25.06 14.46 34.12 4.30
4250 4328 2.395360 TTTTTGGATCGCGCTCCCG 61.395 57.895 25.06 0.00 34.12 5.14
4251 4329 2.789845 TTTTTGGATCGCGCTCCCGA 62.790 55.000 25.06 11.84 41.98 5.14
4252 4330 3.716539 TTTGGATCGCGCTCCCGAG 62.717 63.158 25.06 0.00 40.97 4.63
4275 4353 2.813908 GCACCACGACCGTCCATC 60.814 66.667 0.00 0.00 0.00 3.51
4276 4354 2.506217 CACCACGACCGTCCATCG 60.506 66.667 0.00 0.00 45.17 3.84
4277 4355 4.430765 ACCACGACCGTCCATCGC 62.431 66.667 0.00 0.00 43.46 4.58
4323 4401 3.601685 CAGGTGGGCGGCGTTTTT 61.602 61.111 9.37 0.00 0.00 1.94
4338 4416 3.035727 TTTTTGTCGGGGCGCTTC 58.964 55.556 7.64 0.00 0.00 3.86
4339 4417 1.824329 TTTTTGTCGGGGCGCTTCA 60.824 52.632 7.64 0.00 0.00 3.02
4340 4418 1.384989 TTTTTGTCGGGGCGCTTCAA 61.385 50.000 7.64 3.36 0.00 2.69
4341 4419 1.384989 TTTTGTCGGGGCGCTTCAAA 61.385 50.000 7.64 9.29 0.00 2.69
4342 4420 1.384989 TTTGTCGGGGCGCTTCAAAA 61.385 50.000 7.64 0.00 0.00 2.44
4343 4421 1.175983 TTGTCGGGGCGCTTCAAAAT 61.176 50.000 7.64 0.00 0.00 1.82
4344 4422 1.175983 TGTCGGGGCGCTTCAAAATT 61.176 50.000 7.64 0.00 0.00 1.82
4345 4423 0.038618 GTCGGGGCGCTTCAAAATTT 60.039 50.000 7.64 0.00 0.00 1.82
4346 4424 0.242555 TCGGGGCGCTTCAAAATTTC 59.757 50.000 7.64 0.00 0.00 2.17
4347 4425 1.070471 CGGGGCGCTTCAAAATTTCG 61.070 55.000 7.64 0.00 0.00 3.46
4348 4426 0.735978 GGGGCGCTTCAAAATTTCGG 60.736 55.000 7.64 0.00 0.00 4.30
4349 4427 0.735978 GGGCGCTTCAAAATTTCGGG 60.736 55.000 7.64 0.00 0.00 5.14
4350 4428 0.242555 GGCGCTTCAAAATTTCGGGA 59.757 50.000 7.64 0.00 0.00 5.14
4351 4429 1.617740 GCGCTTCAAAATTTCGGGAG 58.382 50.000 0.00 0.00 0.00 4.30
4352 4430 1.199097 GCGCTTCAAAATTTCGGGAGA 59.801 47.619 0.00 0.00 0.00 3.71
4353 4431 2.851534 CGCTTCAAAATTTCGGGAGAC 58.148 47.619 2.99 0.00 39.59 3.36
4354 4432 2.724839 CGCTTCAAAATTTCGGGAGACG 60.725 50.000 2.99 2.89 46.11 4.18
4355 4433 2.851534 CTTCAAAATTTCGGGAGACGC 58.148 47.619 0.00 0.00 43.86 5.19
4356 4434 0.793861 TCAAAATTTCGGGAGACGCG 59.206 50.000 3.53 3.53 43.86 6.01
4357 4435 0.793104 CAAAATTTCGGGAGACGCGC 60.793 55.000 5.73 0.00 43.86 6.86
4358 4436 0.953960 AAAATTTCGGGAGACGCGCT 60.954 50.000 5.73 3.91 43.86 5.92
4359 4437 1.635663 AAATTTCGGGAGACGCGCTG 61.636 55.000 5.73 1.02 43.86 5.18
4365 4443 3.518998 GGAGACGCGCTGCTCCTA 61.519 66.667 28.01 0.00 45.72 2.94
4366 4444 2.725008 GAGACGCGCTGCTCCTAT 59.275 61.111 5.73 0.00 0.00 2.57
4367 4445 1.371145 GAGACGCGCTGCTCCTATC 60.371 63.158 5.73 0.00 0.00 2.08
4368 4446 2.355244 GACGCGCTGCTCCTATCC 60.355 66.667 5.73 0.00 0.00 2.59
4369 4447 2.835431 ACGCGCTGCTCCTATCCT 60.835 61.111 5.73 0.00 0.00 3.24
4370 4448 2.355599 CGCGCTGCTCCTATCCTG 60.356 66.667 5.56 0.00 0.00 3.86
4371 4449 2.664518 GCGCTGCTCCTATCCTGC 60.665 66.667 0.00 0.00 0.00 4.85
4372 4450 2.030262 CGCTGCTCCTATCCTGCC 59.970 66.667 0.00 0.00 0.00 4.85
4373 4451 2.030262 GCTGCTCCTATCCTGCCG 59.970 66.667 0.00 0.00 0.00 5.69
4374 4452 2.801631 GCTGCTCCTATCCTGCCGT 61.802 63.158 0.00 0.00 0.00 5.68
4375 4453 1.826024 CTGCTCCTATCCTGCCGTT 59.174 57.895 0.00 0.00 0.00 4.44
4376 4454 0.179000 CTGCTCCTATCCTGCCGTTT 59.821 55.000 0.00 0.00 0.00 3.60
4377 4455 0.178068 TGCTCCTATCCTGCCGTTTC 59.822 55.000 0.00 0.00 0.00 2.78
4378 4456 0.533085 GCTCCTATCCTGCCGTTTCC 60.533 60.000 0.00 0.00 0.00 3.13
4379 4457 0.106894 CTCCTATCCTGCCGTTTCCC 59.893 60.000 0.00 0.00 0.00 3.97
4380 4458 1.148498 CCTATCCTGCCGTTTCCCC 59.852 63.158 0.00 0.00 0.00 4.81
4381 4459 1.227556 CTATCCTGCCGTTTCCCCG 60.228 63.158 0.00 0.00 0.00 5.73
4382 4460 1.968050 CTATCCTGCCGTTTCCCCGT 61.968 60.000 0.00 0.00 0.00 5.28
4383 4461 1.555477 TATCCTGCCGTTTCCCCGTT 61.555 55.000 0.00 0.00 0.00 4.44
4384 4462 2.814913 ATCCTGCCGTTTCCCCGTTC 62.815 60.000 0.00 0.00 0.00 3.95
4385 4463 3.053896 CTGCCGTTTCCCCGTTCC 61.054 66.667 0.00 0.00 0.00 3.62
4386 4464 4.646877 TGCCGTTTCCCCGTTCCC 62.647 66.667 0.00 0.00 0.00 3.97
4388 4466 3.956314 CCGTTTCCCCGTTCCCCA 61.956 66.667 0.00 0.00 0.00 4.96
4389 4467 2.670592 CGTTTCCCCGTTCCCCAC 60.671 66.667 0.00 0.00 0.00 4.61
4390 4468 2.282674 GTTTCCCCGTTCCCCACC 60.283 66.667 0.00 0.00 0.00 4.61
4391 4469 2.450897 TTTCCCCGTTCCCCACCT 60.451 61.111 0.00 0.00 0.00 4.00
4392 4470 2.531601 TTTCCCCGTTCCCCACCTC 61.532 63.158 0.00 0.00 0.00 3.85
4393 4471 3.795977 TTCCCCGTTCCCCACCTCA 62.796 63.158 0.00 0.00 0.00 3.86
4394 4472 4.029809 CCCCGTTCCCCACCTCAC 62.030 72.222 0.00 0.00 0.00 3.51
4395 4473 3.246112 CCCGTTCCCCACCTCACA 61.246 66.667 0.00 0.00 0.00 3.58
4396 4474 2.032071 CCGTTCCCCACCTCACAC 59.968 66.667 0.00 0.00 0.00 3.82
4397 4475 2.032071 CGTTCCCCACCTCACACC 59.968 66.667 0.00 0.00 0.00 4.16
4398 4476 2.434774 GTTCCCCACCTCACACCC 59.565 66.667 0.00 0.00 0.00 4.61
4399 4477 2.154074 GTTCCCCACCTCACACCCT 61.154 63.158 0.00 0.00 0.00 4.34
4400 4478 1.846124 TTCCCCACCTCACACCCTC 60.846 63.158 0.00 0.00 0.00 4.30
4401 4479 2.203998 CCCCACCTCACACCCTCT 60.204 66.667 0.00 0.00 0.00 3.69
4402 4480 2.294078 CCCCACCTCACACCCTCTC 61.294 68.421 0.00 0.00 0.00 3.20
4403 4481 2.294078 CCCACCTCACACCCTCTCC 61.294 68.421 0.00 0.00 0.00 3.71
4404 4482 2.294078 CCACCTCACACCCTCTCCC 61.294 68.421 0.00 0.00 0.00 4.30
4405 4483 2.283966 ACCTCACACCCTCTCCCG 60.284 66.667 0.00 0.00 0.00 5.14
4406 4484 2.037367 CCTCACACCCTCTCCCGA 59.963 66.667 0.00 0.00 0.00 5.14
4407 4485 2.352032 CCTCACACCCTCTCCCGAC 61.352 68.421 0.00 0.00 0.00 4.79
4408 4486 2.675423 TCACACCCTCTCCCGACG 60.675 66.667 0.00 0.00 0.00 5.12
4409 4487 2.675423 CACACCCTCTCCCGACGA 60.675 66.667 0.00 0.00 0.00 4.20
4410 4488 2.361357 ACACCCTCTCCCGACGAG 60.361 66.667 0.00 0.00 40.30 4.18
4411 4489 2.045242 CACCCTCTCCCGACGAGA 60.045 66.667 0.00 2.70 45.75 4.04
4412 4490 2.045143 ACCCTCTCCCGACGAGAC 60.045 66.667 0.00 0.00 42.97 3.36
4413 4491 2.045242 CCCTCTCCCGACGAGACA 60.045 66.667 0.00 0.00 42.97 3.41
4414 4492 1.677966 CCCTCTCCCGACGAGACAA 60.678 63.158 0.00 0.00 42.97 3.18
4415 4493 1.248785 CCCTCTCCCGACGAGACAAA 61.249 60.000 0.00 0.00 42.97 2.83
4416 4494 0.818296 CCTCTCCCGACGAGACAAAT 59.182 55.000 0.00 0.00 42.97 2.32
4417 4495 1.202313 CCTCTCCCGACGAGACAAATC 60.202 57.143 0.00 0.00 42.97 2.17
4418 4496 0.815734 TCTCCCGACGAGACAAATCC 59.184 55.000 0.00 0.00 42.97 3.01
4419 4497 0.179108 CTCCCGACGAGACAAATCCC 60.179 60.000 0.00 0.00 41.63 3.85
4420 4498 0.901114 TCCCGACGAGACAAATCCCA 60.901 55.000 0.00 0.00 0.00 4.37
4421 4499 0.739813 CCCGACGAGACAAATCCCAC 60.740 60.000 0.00 0.00 0.00 4.61
4422 4500 0.246635 CCGACGAGACAAATCCCACT 59.753 55.000 0.00 0.00 0.00 4.00
4423 4501 1.630148 CGACGAGACAAATCCCACTC 58.370 55.000 0.00 0.00 0.00 3.51
4429 4507 4.866682 GAGACAAATCCCACTCGAAATC 57.133 45.455 0.00 0.00 0.00 2.17
4430 4508 3.610911 AGACAAATCCCACTCGAAATCC 58.389 45.455 0.00 0.00 0.00 3.01
4431 4509 2.683362 GACAAATCCCACTCGAAATCCC 59.317 50.000 0.00 0.00 0.00 3.85
4432 4510 2.308866 ACAAATCCCACTCGAAATCCCT 59.691 45.455 0.00 0.00 0.00 4.20
4433 4511 3.521937 ACAAATCCCACTCGAAATCCCTA 59.478 43.478 0.00 0.00 0.00 3.53
4434 4512 4.130118 CAAATCCCACTCGAAATCCCTAG 58.870 47.826 0.00 0.00 0.00 3.02
4435 4513 1.120530 TCCCACTCGAAATCCCTAGC 58.879 55.000 0.00 0.00 0.00 3.42
4436 4514 1.123928 CCCACTCGAAATCCCTAGCT 58.876 55.000 0.00 0.00 0.00 3.32
4437 4515 1.486726 CCCACTCGAAATCCCTAGCTT 59.513 52.381 0.00 0.00 0.00 3.74
4438 4516 2.483889 CCCACTCGAAATCCCTAGCTTC 60.484 54.545 0.00 0.00 0.00 3.86
4439 4517 2.464865 CACTCGAAATCCCTAGCTTCG 58.535 52.381 0.00 0.00 42.49 3.79
4440 4518 1.202428 ACTCGAAATCCCTAGCTTCGC 60.202 52.381 0.00 0.00 41.25 4.70
4441 4519 0.104304 TCGAAATCCCTAGCTTCGCC 59.896 55.000 0.00 0.00 41.25 5.54
4442 4520 1.215655 CGAAATCCCTAGCTTCGCCG 61.216 60.000 0.00 0.00 35.97 6.46
4443 4521 1.499688 GAAATCCCTAGCTTCGCCGC 61.500 60.000 0.00 0.00 0.00 6.53
4444 4522 3.792053 AATCCCTAGCTTCGCCGCG 62.792 63.158 6.39 6.39 34.40 6.46
4446 4524 4.933064 CCCTAGCTTCGCCGCGAG 62.933 72.222 16.14 11.18 37.14 5.03
4486 4564 3.169207 GGTGACGAGTTCAATTCAACG 57.831 47.619 0.00 0.00 35.39 4.10
4487 4565 2.798283 GGTGACGAGTTCAATTCAACGA 59.202 45.455 0.00 0.00 35.39 3.85
4488 4566 3.120991 GGTGACGAGTTCAATTCAACGAG 60.121 47.826 0.00 0.00 35.39 4.18
4489 4567 2.475111 TGACGAGTTCAATTCAACGAGC 59.525 45.455 0.00 0.00 0.00 5.03
4490 4568 1.455786 ACGAGTTCAATTCAACGAGCG 59.544 47.619 0.00 4.32 0.00 5.03
4491 4569 1.783416 CGAGTTCAATTCAACGAGCGC 60.783 52.381 0.00 0.00 0.00 5.92
4492 4570 0.163788 AGTTCAATTCAACGAGCGCG 59.836 50.000 8.75 8.75 44.79 6.86
4493 4571 0.789383 GTTCAATTCAACGAGCGCGG 60.789 55.000 15.86 0.00 43.17 6.46
4494 4572 2.507322 TTCAATTCAACGAGCGCGGC 62.507 55.000 15.86 0.00 43.17 6.53
4495 4573 4.147322 AATTCAACGAGCGCGGCG 62.147 61.111 19.62 19.62 43.17 6.46
4518 4596 4.738998 TCGGCGAAGGACCCCGTA 62.739 66.667 7.35 0.00 42.48 4.02
4519 4597 4.203076 CGGCGAAGGACCCCGTAG 62.203 72.222 0.00 0.00 37.36 3.51
4520 4598 4.525949 GGCGAAGGACCCCGTAGC 62.526 72.222 5.88 0.00 33.66 3.58
4521 4599 3.766691 GCGAAGGACCCCGTAGCA 61.767 66.667 5.88 0.00 34.41 3.49
4522 4600 2.494918 CGAAGGACCCCGTAGCAG 59.505 66.667 0.00 0.00 0.00 4.24
4523 4601 2.348888 CGAAGGACCCCGTAGCAGT 61.349 63.158 0.00 0.00 0.00 4.40
4524 4602 1.885163 CGAAGGACCCCGTAGCAGTT 61.885 60.000 0.00 0.00 0.00 3.16
4525 4603 0.323957 GAAGGACCCCGTAGCAGTTT 59.676 55.000 0.00 0.00 0.00 2.66
4526 4604 0.036306 AAGGACCCCGTAGCAGTTTG 59.964 55.000 0.00 0.00 0.00 2.93
4527 4605 2.038837 GGACCCCGTAGCAGTTTGC 61.039 63.158 0.00 0.00 45.46 3.68
4564 4642 3.179265 CGCGTGCCGTACAAGGAG 61.179 66.667 0.00 0.00 0.00 3.69
4565 4643 2.813908 GCGTGCCGTACAAGGAGG 60.814 66.667 0.00 0.00 0.00 4.30
4566 4644 2.967397 CGTGCCGTACAAGGAGGA 59.033 61.111 0.00 0.00 0.00 3.71
4567 4645 1.153823 CGTGCCGTACAAGGAGGAG 60.154 63.158 0.00 0.00 0.00 3.69
4568 4646 1.592400 CGTGCCGTACAAGGAGGAGA 61.592 60.000 0.00 0.00 0.00 3.71
4569 4647 0.606604 GTGCCGTACAAGGAGGAGAA 59.393 55.000 0.00 0.00 0.00 2.87
4570 4648 0.895530 TGCCGTACAAGGAGGAGAAG 59.104 55.000 0.00 0.00 0.00 2.85
4571 4649 0.175989 GCCGTACAAGGAGGAGAAGG 59.824 60.000 0.00 0.00 0.00 3.46
4572 4650 0.175989 CCGTACAAGGAGGAGAAGGC 59.824 60.000 0.00 0.00 0.00 4.35
4573 4651 0.895530 CGTACAAGGAGGAGAAGGCA 59.104 55.000 0.00 0.00 0.00 4.75
4574 4652 1.134965 CGTACAAGGAGGAGAAGGCAG 60.135 57.143 0.00 0.00 0.00 4.85
4575 4653 0.905357 TACAAGGAGGAGAAGGCAGC 59.095 55.000 0.00 0.00 0.00 5.25
4576 4654 1.449246 CAAGGAGGAGAAGGCAGCG 60.449 63.158 0.00 0.00 0.00 5.18
4577 4655 2.664081 AAGGAGGAGAAGGCAGCGG 61.664 63.158 0.00 0.00 0.00 5.52
4578 4656 4.847444 GGAGGAGAAGGCAGCGGC 62.847 72.222 0.00 0.00 40.13 6.53
4604 4682 3.721706 GGAGGGGTGGAGCTGGTG 61.722 72.222 0.00 0.00 0.00 4.17
4605 4683 3.721706 GAGGGGTGGAGCTGGTGG 61.722 72.222 0.00 0.00 0.00 4.61
4606 4684 4.599500 AGGGGTGGAGCTGGTGGT 62.599 66.667 0.00 0.00 0.00 4.16
4607 4685 3.580319 GGGGTGGAGCTGGTGGTT 61.580 66.667 0.00 0.00 0.00 3.67
4608 4686 2.034221 GGGTGGAGCTGGTGGTTC 59.966 66.667 0.00 0.00 0.00 3.62
4609 4687 2.829384 GGGTGGAGCTGGTGGTTCA 61.829 63.158 0.00 0.00 0.00 3.18
4610 4688 1.302832 GGTGGAGCTGGTGGTTCAG 60.303 63.158 0.00 0.00 37.79 3.02
4616 4694 3.114616 CTGGTGGTTCAGCGCGAG 61.115 66.667 12.10 0.07 34.27 5.03
4617 4695 4.680237 TGGTGGTTCAGCGCGAGG 62.680 66.667 12.10 0.00 34.27 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.373565 GTTCTTTGGGCGGGCCAG 61.374 66.667 23.18 13.16 37.98 4.85
1 2 4.986708 GGTTCTTTGGGCGGGCCA 62.987 66.667 20.63 20.63 37.98 5.36
18 19 2.600731 CTATCTCTAAGAATGGCCGCG 58.399 52.381 0.00 0.00 0.00 6.46
46 47 6.427547 AGACACAATTTGGTGCAATAAAATGG 59.572 34.615 13.43 8.89 42.55 3.16
59 60 7.284034 AGCATATAGGAAGAAGACACAATTTGG 59.716 37.037 0.78 0.00 0.00 3.28
60 61 8.218338 AGCATATAGGAAGAAGACACAATTTG 57.782 34.615 0.00 0.00 0.00 2.32
61 62 9.331282 GTAGCATATAGGAAGAAGACACAATTT 57.669 33.333 0.00 0.00 0.00 1.82
87 88 3.058016 AGCTTCAATTGTGAACACATCGG 60.058 43.478 8.46 2.04 41.52 4.18
88 89 4.083643 AGAGCTTCAATTGTGAACACATCG 60.084 41.667 8.46 1.34 41.52 3.84
108 109 5.124297 TGTTGTCCATTATGCATGACAAGAG 59.876 40.000 23.31 4.04 35.43 2.85
114 115 5.662456 CCAATTGTTGTCCATTATGCATGA 58.338 37.500 10.16 0.00 34.31 3.07
128 129 4.706476 TCCTAGAGAATTGGCCAATTGTTG 59.294 41.667 41.25 28.80 40.77 3.33
241 242 8.833493 TCTGCAATATGAGAACAATCAACATAG 58.167 33.333 0.00 0.00 33.76 2.23
258 259 5.601313 AGAATTGGCATTCCTTCTGCAATAT 59.399 36.000 0.00 0.00 39.95 1.28
266 267 2.749621 ACGACAGAATTGGCATTCCTTC 59.250 45.455 0.00 0.00 39.95 3.46
285 286 5.809051 ACTAAATTTAGCTAACTCGGGAACG 59.191 40.000 22.45 0.00 44.47 3.95
315 316 5.489278 AGCACTAGGAGGGTCTCTTTTATTT 59.511 40.000 0.00 0.00 0.00 1.40
485 486 7.495279 TGAAGGAAAGTCAATGAAACCAAAATG 59.505 33.333 0.00 0.00 0.00 2.32
486 487 7.495606 GTGAAGGAAAGTCAATGAAACCAAAAT 59.504 33.333 0.00 0.00 0.00 1.82
490 491 4.340950 GGTGAAGGAAAGTCAATGAAACCA 59.659 41.667 0.00 0.00 0.00 3.67
676 677 6.641314 CGGTGGCATAAGTACTTTATACTCAG 59.359 42.308 14.49 1.57 30.75 3.35
698 699 2.244000 GCATGTGTAGTGCAACGGT 58.756 52.632 0.00 0.00 45.86 4.83
780 781 0.980754 TGGATAGGCCCGTCACATGT 60.981 55.000 0.00 0.00 34.97 3.21
824 825 1.604378 CCTGAATGGAGAGCCCGTT 59.396 57.895 0.00 0.00 46.57 4.44
863 864 4.993028 ACAAGGTGATGTTTAGGGCTTTA 58.007 39.130 0.00 0.00 0.00 1.85
893 894 0.037232 GTTTCGGGGAGAGTGGAGTG 60.037 60.000 0.00 0.00 0.00 3.51
911 912 1.863155 ATGATGGCCGTCTTTGGGGT 61.863 55.000 25.20 0.92 0.00 4.95
932 933 2.211761 GAAGAAGGCAACGCGACGAC 62.212 60.000 15.93 4.87 46.39 4.34
961 965 2.036571 CGCGGGGTGTAGGGTTTTC 61.037 63.158 0.00 0.00 0.00 2.29
1083 1087 0.647410 CGTCGATGTTGTGATCTGGC 59.353 55.000 0.00 0.00 0.00 4.85
1507 1511 1.349688 ACAAGCCCGAGACAAATACCA 59.650 47.619 0.00 0.00 0.00 3.25
1547 1551 5.067805 CCAACCCCAGCTATCTAAATGTTTC 59.932 44.000 0.00 0.00 0.00 2.78
1548 1552 4.956075 CCAACCCCAGCTATCTAAATGTTT 59.044 41.667 0.00 0.00 0.00 2.83
1653 1657 6.374333 GGCACCTTCAAACTATCACTAATCAA 59.626 38.462 0.00 0.00 0.00 2.57
1666 1670 4.320608 TCAATCAAAGGCACCTTCAAAC 57.679 40.909 1.61 0.00 34.84 2.93
1694 1698 7.047891 AGCTGATTAGATCACCGAACAATTAA 58.952 34.615 0.00 0.00 35.06 1.40
1788 1792 8.599774 CAAAACAATAAACACAAACCGAGAAAT 58.400 29.630 0.00 0.00 0.00 2.17
1794 1798 5.710613 AGCAAAACAATAAACACAAACCG 57.289 34.783 0.00 0.00 0.00 4.44
1929 1933 9.854385 ATGTAACACACATGGTGCATTTACTGC 62.854 40.741 12.53 0.00 45.57 4.40
2029 2089 9.985730 AATTGCAAGTCTTTCAAGATAATGAAA 57.014 25.926 4.94 2.85 44.68 2.69
2059 2119 3.334691 TGCTCTGATTCACCCTTAAACG 58.665 45.455 0.00 0.00 0.00 3.60
2093 2153 4.270325 GTGTTACTTCGTCAAGAGCTTGTT 59.730 41.667 9.79 0.00 41.16 2.83
2171 2232 5.960202 ACCCAAGAGCAATAAAAGGATGAAT 59.040 36.000 0.00 0.00 0.00 2.57
2264 2325 5.822519 GGAAATGGATGTTCTATGTGCACTA 59.177 40.000 19.41 4.84 0.00 2.74
2277 2338 2.383338 AGAACCAAGGGGAAATGGATGT 59.617 45.455 0.00 0.00 39.12 3.06
2299 2360 6.276091 AGCAAGAAACAACTCAATTTCCTTC 58.724 36.000 0.00 0.00 35.77 3.46
2360 2421 9.005777 TCAATTTAGTGTGGTATGAAAGGTAAC 57.994 33.333 0.00 0.00 0.00 2.50
2396 2457 2.209838 ACAAGATCGCACATAGGTCG 57.790 50.000 0.00 0.00 0.00 4.79
2435 2496 3.094572 CCTACCTCAACGAAGGAAGGTA 58.905 50.000 9.65 8.03 38.87 3.08
2461 2522 2.872842 GCCATTTCTGCAAGCCATTTGT 60.873 45.455 0.00 0.00 39.08 2.83
2510 2571 2.366533 CTGCTGCCAACATCAGAGATT 58.633 47.619 0.00 0.00 41.58 2.40
2555 2616 3.350219 TCATTAGTCAAGGAACCAGCC 57.650 47.619 0.00 0.00 0.00 4.85
2624 2685 6.014156 ACTGATATTGTAAGGTAGATGGAGGC 60.014 42.308 0.00 0.00 0.00 4.70
2681 2742 4.657013 TGCACCAGTTATTCCAACATACA 58.343 39.130 0.00 0.00 0.00 2.29
2707 2768 7.242322 TCATTCCATTGATTCACAAATCCAA 57.758 32.000 0.00 0.00 40.57 3.53
2731 2793 3.055530 CAGCCAACAGATTCTCAGTACCT 60.056 47.826 0.00 0.00 0.00 3.08
2846 2908 5.573337 AAGGAACATCTATTTTGAGCAGC 57.427 39.130 0.00 0.00 0.00 5.25
2927 2989 8.783833 AAGATAGATGCATCATTGGTATACAC 57.216 34.615 27.81 8.18 0.00 2.90
2928 2990 9.875691 GTAAGATAGATGCATCATTGGTATACA 57.124 33.333 27.81 3.68 0.00 2.29
2929 2991 9.875691 TGTAAGATAGATGCATCATTGGTATAC 57.124 33.333 27.81 19.11 0.00 1.47
2933 2995 7.551974 GCTATGTAAGATAGATGCATCATTGGT 59.448 37.037 27.81 9.91 0.00 3.67
2955 3017 8.525290 AATTTAGCATTCCAAGTTAGTGCTAT 57.475 30.769 6.25 0.00 44.85 2.97
2958 3020 8.980143 TTTAATTTAGCATTCCAAGTTAGTGC 57.020 30.769 0.00 0.00 36.11 4.40
2981 3043 7.181569 TGTGGAAAAATCTGGAGAACTTTTT 57.818 32.000 1.94 1.94 32.25 1.94
2995 3057 5.769162 CCACCCAATTTTGATGTGGAAAAAT 59.231 36.000 19.09 0.00 45.60 1.82
3017 3079 6.073447 TGTTTCTAAATGATCTAAGGCCCA 57.927 37.500 0.00 0.00 0.00 5.36
3085 3153 7.520451 AGAAATTGTCCCAAGTAACCTAAAC 57.480 36.000 0.00 0.00 0.00 2.01
3179 3247 3.352648 ACACAGCACAGGTAAAAAGTGT 58.647 40.909 0.00 0.00 35.75 3.55
3181 3249 6.320164 TGATAAACACAGCACAGGTAAAAAGT 59.680 34.615 0.00 0.00 0.00 2.66
3185 3253 6.892658 AATGATAAACACAGCACAGGTAAA 57.107 33.333 0.00 0.00 0.00 2.01
3218 3286 4.836825 ACACTGAATAACTGATCCACTGG 58.163 43.478 0.00 0.00 0.00 4.00
3219 3287 6.018425 GCATACACTGAATAACTGATCCACTG 60.018 42.308 0.00 0.00 0.00 3.66
3242 3310 2.760634 TCAGAATAGCAAGTTCCGCA 57.239 45.000 0.00 0.00 0.00 5.69
3274 3342 0.877071 AACAGAGGCAATGCTCGTTG 59.123 50.000 4.82 1.81 0.00 4.10
3277 3345 2.283298 ACATAACAGAGGCAATGCTCG 58.717 47.619 4.82 1.05 0.00 5.03
3301 3369 8.755028 TGCAAAAGTCCTAGAACAGTACATATA 58.245 33.333 0.00 0.00 0.00 0.86
3302 3370 7.620880 TGCAAAAGTCCTAGAACAGTACATAT 58.379 34.615 0.00 0.00 0.00 1.78
3312 3380 3.758554 GGCTTGATGCAAAAGTCCTAGAA 59.241 43.478 12.56 0.00 45.15 2.10
3323 3391 0.925558 TGGATAGGGGCTTGATGCAA 59.074 50.000 0.00 0.00 45.15 4.08
3329 3397 1.131638 TACAGCTGGATAGGGGCTTG 58.868 55.000 19.93 0.00 33.74 4.01
3330 3398 2.124560 ATACAGCTGGATAGGGGCTT 57.875 50.000 19.93 0.00 33.74 4.35
3336 3404 5.028549 ACAACAGGAATACAGCTGGATAG 57.971 43.478 19.93 8.70 0.00 2.08
3485 3554 5.745227 CTTAGGTCCACTTCAATGTATGGT 58.255 41.667 0.00 0.00 33.67 3.55
3654 3729 8.598916 TGTTGGAAATAGTTAATACAGTGGAGA 58.401 33.333 0.00 0.00 0.00 3.71
3675 3750 8.816640 ATAGCAAAACAAGTTTATTCTGTTGG 57.183 30.769 0.00 0.00 31.63 3.77
3903 3978 3.417069 AACCATCCGATTGTCAACAGA 57.583 42.857 0.00 0.00 0.00 3.41
3923 3998 7.013464 ACGTAACACAATCCTACAATGGAAAAA 59.987 33.333 0.00 0.00 39.85 1.94
3945 4020 4.855388 GCTTGACGACTAGAAAATCACGTA 59.145 41.667 0.00 0.00 34.26 3.57
3961 4036 1.987770 GCAAATTCCATGTGCTTGACG 59.012 47.619 0.00 0.00 35.36 4.35
4055 4133 5.526115 TCAGTGTGAACTAGAACTTTACCG 58.474 41.667 0.00 0.00 0.00 4.02
4123 4201 0.924090 GCTCGTTAGACAGCGATTGG 59.076 55.000 0.00 0.00 36.76 3.16
4124 4202 1.321743 GTGCTCGTTAGACAGCGATTG 59.678 52.381 0.00 0.00 36.76 2.67
4125 4203 1.630148 GTGCTCGTTAGACAGCGATT 58.370 50.000 0.00 0.00 36.76 3.34
4126 4204 0.523546 CGTGCTCGTTAGACAGCGAT 60.524 55.000 0.00 0.00 36.76 4.58
4127 4205 1.154282 CGTGCTCGTTAGACAGCGA 60.154 57.895 0.00 0.00 38.59 4.93
4128 4206 2.778997 GCGTGCTCGTTAGACAGCG 61.779 63.158 10.18 0.00 38.59 5.18
4129 4207 2.778997 CGCGTGCTCGTTAGACAGC 61.779 63.158 10.18 0.00 39.49 4.40
4130 4208 2.778997 GCGCGTGCTCGTTAGACAG 61.779 63.158 15.02 0.00 39.49 3.51
4131 4209 2.803670 GCGCGTGCTCGTTAGACA 60.804 61.111 15.02 0.00 39.49 3.41
4132 4210 3.887327 CGCGCGTGCTCGTTAGAC 61.887 66.667 24.19 0.00 39.65 2.59
4133 4211 3.391160 ATCGCGCGTGCTCGTTAGA 62.391 57.895 30.98 6.29 39.65 2.10
4134 4212 2.906719 GATCGCGCGTGCTCGTTAG 61.907 63.158 30.98 1.82 39.65 2.34
4135 4213 2.947621 GATCGCGCGTGCTCGTTA 60.948 61.111 30.98 8.03 39.65 3.18
4148 4226 4.637489 CTCGGGAGCGCTGGATCG 62.637 72.222 18.48 13.31 0.00 3.69
4149 4227 4.959596 GCTCGGGAGCGCTGGATC 62.960 72.222 18.48 0.00 45.29 3.36
4170 4248 4.735132 ATGGACGGTCGTGGTGCG 62.735 66.667 0.00 0.00 43.01 5.34
4171 4249 2.813908 GATGGACGGTCGTGGTGC 60.814 66.667 0.00 0.00 0.00 5.01
4172 4250 2.506217 CGATGGACGGTCGTGGTG 60.506 66.667 0.00 0.00 38.46 4.17
4173 4251 4.430765 GCGATGGACGGTCGTGGT 62.431 66.667 0.00 0.00 40.98 4.16
4204 4282 3.706373 CTGGTCGGTCCACCCAGG 61.706 72.222 13.79 0.00 41.69 4.45
4205 4283 3.706373 CCTGGTCGGTCCACCCAG 61.706 72.222 14.43 14.43 44.39 4.45
4206 4284 4.567597 ACCTGGTCGGTCCACCCA 62.568 66.667 0.00 2.84 44.93 4.51
4207 4285 4.016706 CACCTGGTCGGTCCACCC 62.017 72.222 0.00 0.00 44.93 4.61
4208 4286 4.016706 CCACCTGGTCGGTCCACC 62.017 72.222 0.00 4.09 44.93 4.61
4209 4287 4.016706 CCCACCTGGTCGGTCCAC 62.017 72.222 1.83 0.00 44.93 4.02
4219 4297 3.601685 AAAAACGCCGCCCACCTG 61.602 61.111 0.00 0.00 0.00 4.00
4220 4298 3.601685 CAAAAACGCCGCCCACCT 61.602 61.111 0.00 0.00 0.00 4.00
4221 4299 4.656117 CCAAAAACGCCGCCCACC 62.656 66.667 0.00 0.00 0.00 4.61
4222 4300 2.812542 GATCCAAAAACGCCGCCCAC 62.813 60.000 0.00 0.00 0.00 4.61
4223 4301 2.598985 ATCCAAAAACGCCGCCCA 60.599 55.556 0.00 0.00 0.00 5.36
4224 4302 2.180769 GATCCAAAAACGCCGCCC 59.819 61.111 0.00 0.00 0.00 6.13
4225 4303 2.202427 CGATCCAAAAACGCCGCC 60.202 61.111 0.00 0.00 0.00 6.13
4226 4304 2.874315 GCGATCCAAAAACGCCGC 60.874 61.111 0.00 0.00 45.35 6.53
4230 4308 1.226018 GGAGCGCGATCCAAAAACG 60.226 57.895 36.69 0.00 39.34 3.60
4231 4309 1.136774 GGGAGCGCGATCCAAAAAC 59.863 57.895 40.53 21.98 41.52 2.43
4232 4310 2.395360 CGGGAGCGCGATCCAAAAA 61.395 57.895 40.53 0.00 41.52 1.94
4233 4311 2.817834 CGGGAGCGCGATCCAAAA 60.818 61.111 40.53 0.00 41.52 2.44
4234 4312 3.716539 CTCGGGAGCGCGATCCAAA 62.717 63.158 40.53 27.40 41.52 3.28
4235 4313 4.207281 CTCGGGAGCGCGATCCAA 62.207 66.667 40.53 27.75 41.52 3.53
4257 4335 4.735132 ATGGACGGTCGTGGTGCG 62.735 66.667 0.00 0.00 43.01 5.34
4258 4336 2.813908 GATGGACGGTCGTGGTGC 60.814 66.667 0.00 0.00 0.00 5.01
4259 4337 2.506217 CGATGGACGGTCGTGGTG 60.506 66.667 0.00 0.00 38.46 4.17
4260 4338 4.430765 GCGATGGACGGTCGTGGT 62.431 66.667 0.00 0.00 40.98 4.16
4291 4369 4.760047 CTGGTCGGTCCGCCCAAG 62.760 72.222 16.06 5.99 33.59 3.61
4306 4384 3.601685 AAAAACGCCGCCCACCTG 61.602 61.111 0.00 0.00 0.00 4.00
4321 4399 1.384989 TTGAAGCGCCCCGACAAAAA 61.385 50.000 2.29 0.00 0.00 1.94
4322 4400 1.384989 TTTGAAGCGCCCCGACAAAA 61.385 50.000 2.29 0.00 0.00 2.44
4323 4401 1.384989 TTTTGAAGCGCCCCGACAAA 61.385 50.000 2.29 7.34 0.00 2.83
4324 4402 1.175983 ATTTTGAAGCGCCCCGACAA 61.176 50.000 2.29 0.69 0.00 3.18
4325 4403 1.175983 AATTTTGAAGCGCCCCGACA 61.176 50.000 2.29 0.00 0.00 4.35
4326 4404 0.038618 AAATTTTGAAGCGCCCCGAC 60.039 50.000 2.29 0.00 0.00 4.79
4327 4405 0.242555 GAAATTTTGAAGCGCCCCGA 59.757 50.000 2.29 0.00 0.00 5.14
4328 4406 1.070471 CGAAATTTTGAAGCGCCCCG 61.070 55.000 2.29 0.00 0.00 5.73
4329 4407 0.735978 CCGAAATTTTGAAGCGCCCC 60.736 55.000 2.29 0.00 0.00 5.80
4330 4408 0.735978 CCCGAAATTTTGAAGCGCCC 60.736 55.000 2.29 0.00 0.00 6.13
4331 4409 0.242555 TCCCGAAATTTTGAAGCGCC 59.757 50.000 2.29 0.00 0.00 6.53
4332 4410 1.199097 TCTCCCGAAATTTTGAAGCGC 59.801 47.619 7.02 0.00 0.00 5.92
4333 4411 2.724839 CGTCTCCCGAAATTTTGAAGCG 60.725 50.000 7.02 8.06 39.56 4.68
4334 4412 2.851534 CGTCTCCCGAAATTTTGAAGC 58.148 47.619 7.02 1.26 39.56 3.86
4335 4413 2.724839 CGCGTCTCCCGAAATTTTGAAG 60.725 50.000 7.02 4.54 39.56 3.02
4336 4414 1.195900 CGCGTCTCCCGAAATTTTGAA 59.804 47.619 7.02 0.00 39.56 2.69
4337 4415 0.793861 CGCGTCTCCCGAAATTTTGA 59.206 50.000 7.02 0.00 39.56 2.69
4338 4416 0.793104 GCGCGTCTCCCGAAATTTTG 60.793 55.000 8.43 0.00 39.56 2.44
4339 4417 0.953960 AGCGCGTCTCCCGAAATTTT 60.954 50.000 8.43 0.00 39.56 1.82
4340 4418 1.375523 AGCGCGTCTCCCGAAATTT 60.376 52.632 8.43 0.00 39.56 1.82
4341 4419 2.100631 CAGCGCGTCTCCCGAAATT 61.101 57.895 8.43 0.00 39.56 1.82
4342 4420 2.509336 CAGCGCGTCTCCCGAAAT 60.509 61.111 8.43 0.00 39.56 2.17
4349 4427 1.371145 GATAGGAGCAGCGCGTCTC 60.371 63.158 19.27 19.27 0.00 3.36
4350 4428 2.725008 GATAGGAGCAGCGCGTCT 59.275 61.111 8.43 2.25 0.00 4.18
4351 4429 2.355244 GGATAGGAGCAGCGCGTC 60.355 66.667 8.43 0.00 0.00 5.19
4352 4430 2.835431 AGGATAGGAGCAGCGCGT 60.835 61.111 8.43 0.00 0.00 6.01
4353 4431 2.355599 CAGGATAGGAGCAGCGCG 60.356 66.667 0.00 0.00 0.00 6.86
4354 4432 2.664518 GCAGGATAGGAGCAGCGC 60.665 66.667 0.00 0.00 0.00 5.92
4355 4433 2.030262 GGCAGGATAGGAGCAGCG 59.970 66.667 0.00 0.00 0.00 5.18
4356 4434 2.030262 CGGCAGGATAGGAGCAGC 59.970 66.667 0.00 0.00 0.00 5.25
4357 4435 0.179000 AAACGGCAGGATAGGAGCAG 59.821 55.000 0.00 0.00 0.00 4.24
4358 4436 0.178068 GAAACGGCAGGATAGGAGCA 59.822 55.000 0.00 0.00 0.00 4.26
4359 4437 0.533085 GGAAACGGCAGGATAGGAGC 60.533 60.000 0.00 0.00 0.00 4.70
4360 4438 0.106894 GGGAAACGGCAGGATAGGAG 59.893 60.000 0.00 0.00 0.00 3.69
4361 4439 1.342672 GGGGAAACGGCAGGATAGGA 61.343 60.000 0.00 0.00 0.00 2.94
4362 4440 1.148498 GGGGAAACGGCAGGATAGG 59.852 63.158 0.00 0.00 0.00 2.57
4363 4441 1.227556 CGGGGAAACGGCAGGATAG 60.228 63.158 0.00 0.00 0.00 2.08
4364 4442 1.555477 AACGGGGAAACGGCAGGATA 61.555 55.000 0.00 0.00 38.39 2.59
4365 4443 2.814913 GAACGGGGAAACGGCAGGAT 62.815 60.000 0.00 0.00 38.39 3.24
4366 4444 3.540367 GAACGGGGAAACGGCAGGA 62.540 63.158 0.00 0.00 38.39 3.86
4367 4445 3.053896 GAACGGGGAAACGGCAGG 61.054 66.667 0.00 0.00 38.39 4.85
4368 4446 3.053896 GGAACGGGGAAACGGCAG 61.054 66.667 0.00 0.00 38.39 4.85
4369 4447 4.646877 GGGAACGGGGAAACGGCA 62.647 66.667 0.00 0.00 38.39 5.69
4371 4449 3.956314 TGGGGAACGGGGAAACGG 61.956 66.667 0.00 0.00 38.39 4.44
4372 4450 2.670592 GTGGGGAACGGGGAAACG 60.671 66.667 0.00 0.00 40.31 3.60
4373 4451 2.282674 GGTGGGGAACGGGGAAAC 60.283 66.667 0.00 0.00 0.00 2.78
4374 4452 2.450897 AGGTGGGGAACGGGGAAA 60.451 61.111 0.00 0.00 0.00 3.13
4375 4453 2.931649 GAGGTGGGGAACGGGGAA 60.932 66.667 0.00 0.00 0.00 3.97
4376 4454 4.257810 TGAGGTGGGGAACGGGGA 62.258 66.667 0.00 0.00 0.00 4.81
4377 4455 4.029809 GTGAGGTGGGGAACGGGG 62.030 72.222 0.00 0.00 0.00 5.73
4378 4456 3.246112 TGTGAGGTGGGGAACGGG 61.246 66.667 0.00 0.00 0.00 5.28
4379 4457 2.032071 GTGTGAGGTGGGGAACGG 59.968 66.667 0.00 0.00 0.00 4.44
4380 4458 2.032071 GGTGTGAGGTGGGGAACG 59.968 66.667 0.00 0.00 0.00 3.95
4381 4459 2.125766 GAGGGTGTGAGGTGGGGAAC 62.126 65.000 0.00 0.00 0.00 3.62
4382 4460 1.846124 GAGGGTGTGAGGTGGGGAA 60.846 63.158 0.00 0.00 0.00 3.97
4383 4461 2.203938 GAGGGTGTGAGGTGGGGA 60.204 66.667 0.00 0.00 0.00 4.81
4384 4462 2.203998 AGAGGGTGTGAGGTGGGG 60.204 66.667 0.00 0.00 0.00 4.96
4385 4463 2.294078 GGAGAGGGTGTGAGGTGGG 61.294 68.421 0.00 0.00 0.00 4.61
4386 4464 2.294078 GGGAGAGGGTGTGAGGTGG 61.294 68.421 0.00 0.00 0.00 4.61
4387 4465 2.650116 CGGGAGAGGGTGTGAGGTG 61.650 68.421 0.00 0.00 0.00 4.00
4388 4466 2.283966 CGGGAGAGGGTGTGAGGT 60.284 66.667 0.00 0.00 0.00 3.85
4389 4467 2.037367 TCGGGAGAGGGTGTGAGG 59.963 66.667 0.00 0.00 0.00 3.86
4390 4468 2.701780 CGTCGGGAGAGGGTGTGAG 61.702 68.421 0.00 0.00 41.26 3.51
4391 4469 2.675423 CGTCGGGAGAGGGTGTGA 60.675 66.667 0.00 0.00 41.26 3.58
4392 4470 2.675423 TCGTCGGGAGAGGGTGTG 60.675 66.667 0.00 0.00 44.39 3.82
4393 4471 2.361357 CTCGTCGGGAGAGGGTGT 60.361 66.667 0.00 0.00 46.23 4.16
4394 4472 2.045242 TCTCGTCGGGAGAGGGTG 60.045 66.667 0.00 0.00 46.80 4.61
4400 4478 0.179108 GGGATTTGTCTCGTCGGGAG 60.179 60.000 0.00 0.00 44.58 4.30
4401 4479 0.901114 TGGGATTTGTCTCGTCGGGA 60.901 55.000 0.00 0.00 0.00 5.14
4402 4480 0.739813 GTGGGATTTGTCTCGTCGGG 60.740 60.000 0.00 0.00 0.00 5.14
4403 4481 0.246635 AGTGGGATTTGTCTCGTCGG 59.753 55.000 0.00 0.00 0.00 4.79
4404 4482 1.630148 GAGTGGGATTTGTCTCGTCG 58.370 55.000 0.00 0.00 0.00 5.12
4405 4483 1.201647 TCGAGTGGGATTTGTCTCGTC 59.798 52.381 11.95 0.00 46.23 4.20
4406 4484 1.254026 TCGAGTGGGATTTGTCTCGT 58.746 50.000 11.95 0.00 46.23 4.18
4408 4486 3.623510 GGATTTCGAGTGGGATTTGTCTC 59.376 47.826 0.00 0.00 0.00 3.36
4409 4487 3.610911 GGATTTCGAGTGGGATTTGTCT 58.389 45.455 0.00 0.00 0.00 3.41
4410 4488 2.683362 GGGATTTCGAGTGGGATTTGTC 59.317 50.000 0.00 0.00 0.00 3.18
4411 4489 2.308866 AGGGATTTCGAGTGGGATTTGT 59.691 45.455 0.00 0.00 0.00 2.83
4412 4490 3.004752 AGGGATTTCGAGTGGGATTTG 57.995 47.619 0.00 0.00 0.00 2.32
4413 4491 3.433740 GCTAGGGATTTCGAGTGGGATTT 60.434 47.826 0.00 0.00 0.00 2.17
4414 4492 2.104963 GCTAGGGATTTCGAGTGGGATT 59.895 50.000 0.00 0.00 0.00 3.01
4415 4493 1.694696 GCTAGGGATTTCGAGTGGGAT 59.305 52.381 0.00 0.00 0.00 3.85
4416 4494 1.120530 GCTAGGGATTTCGAGTGGGA 58.879 55.000 0.00 0.00 0.00 4.37
4417 4495 1.123928 AGCTAGGGATTTCGAGTGGG 58.876 55.000 0.00 0.00 0.00 4.61
4418 4496 2.799917 CGAAGCTAGGGATTTCGAGTGG 60.800 54.545 0.00 0.00 44.64 4.00
4419 4497 2.464865 CGAAGCTAGGGATTTCGAGTG 58.535 52.381 0.00 0.00 44.64 3.51
4420 4498 2.873133 CGAAGCTAGGGATTTCGAGT 57.127 50.000 0.00 0.00 44.64 4.18
4457 4535 3.827898 CTCGTCACCGGCCCTCTC 61.828 72.222 0.00 0.00 33.95 3.20
4458 4536 4.680537 ACTCGTCACCGGCCCTCT 62.681 66.667 0.00 0.00 33.95 3.69
4459 4537 3.644399 GAACTCGTCACCGGCCCTC 62.644 68.421 0.00 0.00 33.95 4.30
4460 4538 3.692406 GAACTCGTCACCGGCCCT 61.692 66.667 0.00 0.00 33.95 5.19
4461 4539 2.798148 ATTGAACTCGTCACCGGCCC 62.798 60.000 0.00 0.00 35.39 5.80
4462 4540 0.953960 AATTGAACTCGTCACCGGCC 60.954 55.000 0.00 0.00 35.39 6.13
4463 4541 0.442699 GAATTGAACTCGTCACCGGC 59.557 55.000 0.00 0.00 35.39 6.13
4464 4542 1.790755 TGAATTGAACTCGTCACCGG 58.209 50.000 0.00 0.00 35.39 5.28
4465 4543 2.409752 CGTTGAATTGAACTCGTCACCG 60.410 50.000 6.22 0.00 35.39 4.94
4466 4544 2.798283 TCGTTGAATTGAACTCGTCACC 59.202 45.455 6.22 0.00 35.39 4.02
4467 4545 3.661936 GCTCGTTGAATTGAACTCGTCAC 60.662 47.826 6.22 0.00 35.39 3.67
4468 4546 2.475111 GCTCGTTGAATTGAACTCGTCA 59.525 45.455 6.22 0.00 0.00 4.35
4469 4547 2.470781 CGCTCGTTGAATTGAACTCGTC 60.471 50.000 6.22 0.00 0.00 4.20
4470 4548 1.455786 CGCTCGTTGAATTGAACTCGT 59.544 47.619 6.22 0.00 0.00 4.18
4471 4549 1.783416 GCGCTCGTTGAATTGAACTCG 60.783 52.381 0.00 7.65 0.00 4.18
4472 4550 1.783416 CGCGCTCGTTGAATTGAACTC 60.783 52.381 5.56 0.00 0.00 3.01
4473 4551 0.163788 CGCGCTCGTTGAATTGAACT 59.836 50.000 5.56 0.00 0.00 3.01
4474 4552 0.789383 CCGCGCTCGTTGAATTGAAC 60.789 55.000 5.56 0.00 0.00 3.18
4475 4553 1.495509 CCGCGCTCGTTGAATTGAA 59.504 52.632 5.56 0.00 0.00 2.69
4476 4554 3.022401 GCCGCGCTCGTTGAATTGA 62.022 57.895 5.56 0.00 0.00 2.57
4477 4555 2.574212 GCCGCGCTCGTTGAATTG 60.574 61.111 5.56 0.00 0.00 2.32
4478 4556 4.147322 CGCCGCGCTCGTTGAATT 62.147 61.111 5.56 0.00 0.00 2.17
4503 4581 4.525949 GCTACGGGGTCCTTCGCC 62.526 72.222 5.34 0.00 44.44 5.54
4504 4582 3.718210 CTGCTACGGGGTCCTTCGC 62.718 68.421 5.34 0.00 0.00 4.70
4505 4583 1.885163 AACTGCTACGGGGTCCTTCG 61.885 60.000 4.12 4.12 0.00 3.79
4506 4584 0.323957 AAACTGCTACGGGGTCCTTC 59.676 55.000 0.00 0.00 0.00 3.46
4507 4585 0.036306 CAAACTGCTACGGGGTCCTT 59.964 55.000 0.00 0.00 0.00 3.36
4508 4586 1.677552 CAAACTGCTACGGGGTCCT 59.322 57.895 0.00 0.00 0.00 3.85
4509 4587 2.038837 GCAAACTGCTACGGGGTCC 61.039 63.158 0.00 0.00 40.96 4.46
4510 4588 1.302192 TGCAAACTGCTACGGGGTC 60.302 57.895 0.00 0.00 45.31 4.46
4511 4589 1.599797 GTGCAAACTGCTACGGGGT 60.600 57.895 0.00 0.00 45.31 4.95
4512 4590 2.677003 CGTGCAAACTGCTACGGGG 61.677 63.158 12.61 0.00 45.31 5.73
4513 4591 2.860293 CGTGCAAACTGCTACGGG 59.140 61.111 12.61 0.00 45.31 5.28
4515 4593 2.677003 CCCCGTGCAAACTGCTACG 61.677 63.158 13.16 13.16 45.31 3.51
4516 4594 2.978018 GCCCCGTGCAAACTGCTAC 61.978 63.158 0.00 0.00 45.31 3.58
4517 4595 2.671619 GCCCCGTGCAAACTGCTA 60.672 61.111 0.00 0.00 45.31 3.49
4520 4598 3.726517 CTCGCCCCGTGCAAACTG 61.727 66.667 0.00 0.00 41.33 3.16
4550 4628 0.606604 TTCTCCTCCTTGTACGGCAC 59.393 55.000 0.00 0.00 0.00 5.01
4551 4629 0.895530 CTTCTCCTCCTTGTACGGCA 59.104 55.000 0.00 0.00 0.00 5.69
4552 4630 0.175989 CCTTCTCCTCCTTGTACGGC 59.824 60.000 0.00 0.00 0.00 5.68
4553 4631 0.175989 GCCTTCTCCTCCTTGTACGG 59.824 60.000 0.00 0.00 0.00 4.02
4554 4632 0.895530 TGCCTTCTCCTCCTTGTACG 59.104 55.000 0.00 0.00 0.00 3.67
4555 4633 1.406205 GCTGCCTTCTCCTCCTTGTAC 60.406 57.143 0.00 0.00 0.00 2.90
4556 4634 0.905357 GCTGCCTTCTCCTCCTTGTA 59.095 55.000 0.00 0.00 0.00 2.41
4557 4635 1.682257 GCTGCCTTCTCCTCCTTGT 59.318 57.895 0.00 0.00 0.00 3.16
4558 4636 1.449246 CGCTGCCTTCTCCTCCTTG 60.449 63.158 0.00 0.00 0.00 3.61
4559 4637 2.664081 CCGCTGCCTTCTCCTCCTT 61.664 63.158 0.00 0.00 0.00 3.36
4560 4638 3.080121 CCGCTGCCTTCTCCTCCT 61.080 66.667 0.00 0.00 0.00 3.69
4561 4639 4.847444 GCCGCTGCCTTCTCCTCC 62.847 72.222 0.00 0.00 0.00 4.30
4587 4665 3.721706 CACCAGCTCCACCCCTCC 61.722 72.222 0.00 0.00 0.00 4.30
4588 4666 3.721706 CCACCAGCTCCACCCCTC 61.722 72.222 0.00 0.00 0.00 4.30
4589 4667 4.599500 ACCACCAGCTCCACCCCT 62.599 66.667 0.00 0.00 0.00 4.79
4590 4668 3.569200 GAACCACCAGCTCCACCCC 62.569 68.421 0.00 0.00 0.00 4.95
4591 4669 2.034221 GAACCACCAGCTCCACCC 59.966 66.667 0.00 0.00 0.00 4.61
4592 4670 1.302832 CTGAACCACCAGCTCCACC 60.303 63.158 0.00 0.00 0.00 4.61
4593 4671 4.386413 CTGAACCACCAGCTCCAC 57.614 61.111 0.00 0.00 0.00 4.02
4599 4677 3.114616 CTCGCGCTGAACCACCAG 61.115 66.667 5.56 0.00 37.23 4.00
4600 4678 4.680237 CCTCGCGCTGAACCACCA 62.680 66.667 5.56 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.