Multiple sequence alignment - TraesCS3B01G242600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G242600 chr3B 100.000 7260 0 0 1 7260 382655771 382663030 0.000000e+00 13407.0
1 TraesCS3B01G242600 chr3B 79.530 298 29 10 6106 6374 692959056 692959350 4.470000e-42 183.0
2 TraesCS3B01G242600 chr3B 88.406 138 16 0 5815 5952 692958883 692959020 4.510000e-37 167.0
3 TraesCS3B01G242600 chr3B 100.000 35 0 0 7214 7248 133429217 133429183 1.690000e-06 65.8
4 TraesCS3B01G242600 chr3D 98.084 4488 68 13 1 4474 290135232 290139715 0.000000e+00 7795.0
5 TraesCS3B01G242600 chr3D 97.877 2449 35 6 4812 7260 290139713 290142144 0.000000e+00 4218.0
6 TraesCS3B01G242600 chr3D 95.057 263 13 0 1 263 100150520 100150258 1.460000e-111 414.0
7 TraesCS3B01G242600 chr3D 80.870 460 53 16 6106 6541 525324718 525325166 5.430000e-86 329.0
8 TraesCS3B01G242600 chr3D 92.683 41 2 1 7132 7171 525326677 525326717 2.830000e-04 58.4
9 TraesCS3B01G242600 chr3A 94.437 4296 101 29 258 4474 382142674 382146910 0.000000e+00 6482.0
10 TraesCS3B01G242600 chr3A 93.552 977 32 10 5805 6772 382149239 382150193 0.000000e+00 1426.0
11 TraesCS3B01G242600 chr3A 97.066 409 11 1 4812 5220 168225201 168224794 0.000000e+00 688.0
12 TraesCS3B01G242600 chr3A 97.878 377 7 1 5392 5767 382148547 382148923 0.000000e+00 651.0
13 TraesCS3B01G242600 chr3A 90.172 407 22 8 6774 7169 382150520 382150919 1.400000e-141 514.0
14 TraesCS3B01G242600 chr3A 94.719 303 15 1 5008 5310 382147946 382148247 3.070000e-128 470.0
15 TraesCS3B01G242600 chr3A 93.266 297 15 4 3851 4143 168225737 168225442 4.020000e-117 433.0
16 TraesCS3B01G242600 chr3A 97.664 214 5 0 4261 4474 168225412 168225199 1.150000e-97 368.0
17 TraesCS3B01G242600 chr3A 93.023 215 13 2 5496 5709 659515355 659515568 5.470000e-81 313.0
18 TraesCS3B01G242600 chr3A 94.146 205 9 3 4812 5015 382146908 382147110 7.070000e-80 309.0
19 TraesCS3B01G242600 chr3A 100.000 53 0 0 4178 4230 168225463 168225411 1.670000e-16 99.0
20 TraesCS3B01G242600 chr3A 91.071 56 1 1 5311 5362 382148491 382148546 1.010000e-08 73.1
21 TraesCS3B01G242600 chr3A 92.683 41 2 1 7132 7171 659518433 659518473 2.830000e-04 58.4
22 TraesCS3B01G242600 chr5D 96.232 982 23 9 4812 5785 484656800 484655825 0.000000e+00 1596.0
23 TraesCS3B01G242600 chr5D 96.687 332 8 2 4146 4474 484657129 484656798 3.830000e-152 549.0
24 TraesCS3B01G242600 chr5D 95.038 262 13 0 1 262 236390658 236390919 5.240000e-111 412.0
25 TraesCS3B01G242600 chr5D 97.248 109 3 0 5805 5913 484655837 484655729 1.240000e-42 185.0
26 TraesCS3B01G242600 chr5D 91.667 48 0 3 7216 7260 445179204 445179250 6.080000e-06 63.9
27 TraesCS3B01G242600 chr4B 95.707 629 22 4 3851 4474 77643311 77643939 0.000000e+00 1007.0
28 TraesCS3B01G242600 chr4B 96.088 409 15 1 4812 5220 77643937 77644344 0.000000e+00 665.0
29 TraesCS3B01G242600 chr4B 100.000 33 0 0 7216 7248 656283159 656283127 2.190000e-05 62.1
30 TraesCS3B01G242600 chr2B 96.013 602 20 3 3877 4474 384671068 384671669 0.000000e+00 976.0
31 TraesCS3B01G242600 chr2B 96.023 352 14 0 4466 4817 244938005 244937654 2.270000e-159 573.0
32 TraesCS3B01G242600 chr2B 96.512 344 12 0 4472 4815 69039255 69039598 2.940000e-158 569.0
33 TraesCS3B01G242600 chr2B 93.473 383 8 5 4812 5194 384671667 384672032 2.960000e-153 553.0
34 TraesCS3B01G242600 chr2B 97.015 201 4 1 5020 5220 384672031 384672229 3.240000e-88 337.0
35 TraesCS3B01G242600 chr2B 91.489 47 1 2 7216 7260 59264137 59264182 2.190000e-05 62.1
36 TraesCS3B01G242600 chr2B 89.362 47 1 3 7217 7260 699214759 699214804 1.000000e-03 56.5
37 TraesCS3B01G242600 chr4A 97.126 348 10 0 4468 4815 714743644 714743297 8.110000e-164 588.0
38 TraesCS3B01G242600 chr4A 95.385 260 12 0 1 260 163851858 163851599 1.460000e-111 414.0
39 TraesCS3B01G242600 chr4A 94.000 50 3 0 3350 3399 623362866 623362817 7.810000e-10 76.8
40 TraesCS3B01G242600 chr5B 97.110 346 9 1 4470 4815 82473913 82474257 3.770000e-162 582.0
41 TraesCS3B01G242600 chr5B 96.512 344 12 0 4471 4814 480521481 480521824 2.940000e-158 569.0
42 TraesCS3B01G242600 chr5B 91.667 48 0 3 7216 7260 510513756 510513802 6.080000e-06 63.9
43 TraesCS3B01G242600 chrUn 96.839 348 9 2 4468 4815 461112455 461112800 1.360000e-161 580.0
44 TraesCS3B01G242600 chr7B 96.243 346 13 0 4469 4814 384761767 384762112 1.060000e-157 568.0
45 TraesCS3B01G242600 chr6B 96.501 343 12 0 4474 4816 88672242 88671900 1.060000e-157 568.0
46 TraesCS3B01G242600 chr6B 96.210 343 13 0 4474 4816 644015947 644015605 4.920000e-156 562.0
47 TraesCS3B01G242600 chr6B 92.527 281 18 3 1 278 199056178 199056458 4.080000e-107 399.0
48 TraesCS3B01G242600 chr7A 97.667 300 7 0 3655 3954 610194184 610194483 3.880000e-142 516.0
49 TraesCS3B01G242600 chr7A 97.170 106 3 0 3849 3954 610194802 610194907 5.790000e-41 180.0
50 TraesCS3B01G242600 chr6D 95.720 257 11 0 1 257 421436635 421436379 1.460000e-111 414.0
51 TraesCS3B01G242600 chr4D 95.720 257 11 0 1 257 115978539 115978795 1.460000e-111 414.0
52 TraesCS3B01G242600 chr2A 93.571 280 14 3 1 279 286096992 286096716 1.460000e-111 414.0
53 TraesCS3B01G242600 chr2A 100.000 35 0 0 7214 7248 17993715 17993681 1.690000e-06 65.8
54 TraesCS3B01G242600 chr7D 91.901 284 21 2 1 282 263987548 263987831 5.280000e-106 396.0
55 TraesCS3B01G242600 chr7D 92.500 40 2 1 7206 7245 616282282 616282320 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G242600 chr3B 382655771 382663030 7259 False 13407.000000 13407 100.000000 1 7260 1 chr3B.!!$F1 7259
1 TraesCS3B01G242600 chr3D 290135232 290142144 6912 False 6006.500000 7795 97.980500 1 7260 2 chr3D.!!$F1 7259
2 TraesCS3B01G242600 chr3A 382142674 382150919 8245 False 1417.871429 6482 93.710714 258 7169 7 chr3A.!!$F1 6911
3 TraesCS3B01G242600 chr3A 168224794 168225737 943 True 397.000000 688 96.999000 3851 5220 4 chr3A.!!$R1 1369
4 TraesCS3B01G242600 chr5D 484655729 484657129 1400 True 776.666667 1596 96.722333 4146 5913 3 chr5D.!!$R1 1767
5 TraesCS3B01G242600 chr4B 77643311 77644344 1033 False 836.000000 1007 95.897500 3851 5220 2 chr4B.!!$F1 1369
6 TraesCS3B01G242600 chr2B 384671068 384672229 1161 False 622.000000 976 95.500333 3877 5220 3 chr2B.!!$F4 1343
7 TraesCS3B01G242600 chr7A 610194184 610194907 723 False 348.000000 516 97.418500 3655 3954 2 chr7A.!!$F1 299

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
340 342 0.032017 ATCTAGGAAGGCCGTGACCT 60.032 55.000 15.02 15.02 43.91 3.85 F
538 540 0.249398 AGGACACCCAACACGCTATC 59.751 55.000 0.00 0.00 33.88 2.08 F
1295 1326 1.730612 GCGTCTTAGGCCTGTTGTTAC 59.269 52.381 17.99 4.01 0.00 2.50 F
2032 2068 3.139397 TCCCTGTTAGTGTCCCAACAAAT 59.861 43.478 0.00 0.00 37.08 2.32 F
3174 3221 3.016031 CAAGTATGGTGCATGCCAGTTA 58.984 45.455 16.68 0.00 42.47 2.24 F
4667 4781 0.033504 AGACGACGCCTTCACATTGT 59.966 50.000 0.00 0.00 0.00 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1295 1326 2.544694 CGTGCACAATAGCTCTAGGAGG 60.545 54.545 18.64 0.00 34.99 4.30 R
1568 1602 2.573369 CTTCATCATCCCCTTCAGCTG 58.427 52.381 7.63 7.63 0.00 4.24 R
3161 3208 4.396166 ACAAGAGTATTAACTGGCATGCAC 59.604 41.667 21.36 9.64 35.56 4.57 R
3561 3642 5.661056 TGGCCATCTATAAGATCTTACCG 57.339 43.478 17.35 11.15 31.32 4.02 R
4733 4847 0.030638 CCAAAACAGGCGTCCAACAG 59.969 55.000 0.00 0.00 0.00 3.16 R
6510 8235 0.321564 CAGGATTCAGACGGCAACCA 60.322 55.000 0.00 0.00 0.00 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 7.140522 TCATTCTTCTAATGATGTGATCCCA 57.859 36.000 0.00 0.00 32.21 4.37
43 44 6.130569 TGATGTGATCCCATTCATCAAATGA 58.869 36.000 0.00 0.00 46.54 2.57
109 110 4.344679 ACGAGCTAGTCTAGTAGAGGCTTA 59.655 45.833 17.68 3.40 36.38 3.09
115 116 5.571791 AGTCTAGTAGAGGCTTACTAGGG 57.428 47.826 26.08 14.30 46.84 3.53
170 171 8.031848 TGTATCAAGTTTCCGGTTAATACAAC 57.968 34.615 0.00 0.00 0.00 3.32
172 173 6.548441 TCAAGTTTCCGGTTAATACAACTG 57.452 37.500 0.00 0.00 0.00 3.16
340 342 0.032017 ATCTAGGAAGGCCGTGACCT 60.032 55.000 15.02 15.02 43.91 3.85
350 352 2.055042 CCGTGACCTAGGAGCTGCT 61.055 63.158 17.98 13.92 0.00 4.24
409 411 3.367321 AGTTTCTAGCCTAGGGAGTCAC 58.633 50.000 11.72 0.00 0.00 3.67
516 518 6.817765 AATTTTATGTCGTGTCATCACCTT 57.182 33.333 0.00 0.00 41.09 3.50
538 540 0.249398 AGGACACCCAACACGCTATC 59.751 55.000 0.00 0.00 33.88 2.08
566 568 2.573369 CTTCCTTGCTCCTCCATCATG 58.427 52.381 0.00 0.00 0.00 3.07
611 613 5.365619 AGTTCTCACACAAACCTTTACGAT 58.634 37.500 0.00 0.00 0.00 3.73
759 761 7.469260 TGACTGTAAACTGTAAAAGAAACTGC 58.531 34.615 0.00 0.00 0.00 4.40
1113 1144 2.018542 TTGGTTACTATGCCTGCGAC 57.981 50.000 0.00 0.00 0.00 5.19
1295 1326 1.730612 GCGTCTTAGGCCTGTTGTTAC 59.269 52.381 17.99 4.01 0.00 2.50
1792 1826 4.014406 GGTTCGGGTTTCCTTCATTATGT 58.986 43.478 0.00 0.00 0.00 2.29
2032 2068 3.139397 TCCCTGTTAGTGTCCCAACAAAT 59.861 43.478 0.00 0.00 37.08 2.32
2136 2172 5.189928 TGGTTTGACTATCGCAACCATATT 58.810 37.500 7.88 0.00 0.00 1.28
2184 2220 6.479001 TCTGTTCAGTTAAGCAAGTTCTACAC 59.521 38.462 0.00 0.00 0.00 2.90
2185 2221 6.346096 TGTTCAGTTAAGCAAGTTCTACACT 58.654 36.000 0.00 0.00 37.30 3.55
2849 2891 8.518430 TCTGCTATTTTGAAATTAGGCATACA 57.482 30.769 8.42 0.00 31.88 2.29
3174 3221 3.016031 CAAGTATGGTGCATGCCAGTTA 58.984 45.455 16.68 0.00 42.47 2.24
3525 3606 5.581126 ATGACAGTGTTTTTCTTTGCTCA 57.419 34.783 0.00 0.00 0.00 4.26
3530 3611 5.063817 ACAGTGTTTTTCTTTGCTCAATTGC 59.936 36.000 0.00 0.00 0.00 3.56
3561 3642 6.038936 TCCTAGGTGTTTTTGTACTTTTGCTC 59.961 38.462 9.08 0.00 0.00 4.26
3605 3686 4.079980 TCCACTTCTGACGATGGAAAAA 57.920 40.909 0.00 0.00 38.30 1.94
3966 4048 7.223971 TGTGCTGAACTACCGATAAATATTGAC 59.776 37.037 0.00 0.00 0.00 3.18
4239 4348 8.808240 TTTACCTTGATATATGGTCCTAACCT 57.192 34.615 0.00 0.00 46.60 3.50
4471 4585 9.251440 GGATTACTTTTAGAACCAAACCCTTAT 57.749 33.333 0.00 0.00 0.00 1.73
4476 4590 9.516546 ACTTTTAGAACCAAACCCTTATTAGAG 57.483 33.333 0.00 0.00 0.00 2.43
4477 4591 7.933215 TTTAGAACCAAACCCTTATTAGAGC 57.067 36.000 0.00 0.00 0.00 4.09
4478 4592 5.514500 AGAACCAAACCCTTATTAGAGCA 57.486 39.130 0.00 0.00 0.00 4.26
4479 4593 6.079712 AGAACCAAACCCTTATTAGAGCAT 57.920 37.500 0.00 0.00 0.00 3.79
4480 4594 6.122964 AGAACCAAACCCTTATTAGAGCATC 58.877 40.000 0.00 0.00 0.00 3.91
4493 4607 2.231215 GAGCATCTCCAATAGCACGT 57.769 50.000 0.00 0.00 0.00 4.49
4494 4608 1.863454 GAGCATCTCCAATAGCACGTG 59.137 52.381 12.28 12.28 0.00 4.49
4495 4609 1.208052 AGCATCTCCAATAGCACGTGT 59.792 47.619 18.38 6.65 0.00 4.49
4496 4610 2.430694 AGCATCTCCAATAGCACGTGTA 59.569 45.455 18.38 8.75 0.00 2.90
4497 4611 3.070159 AGCATCTCCAATAGCACGTGTAT 59.930 43.478 18.38 10.68 0.00 2.29
4498 4612 4.280929 AGCATCTCCAATAGCACGTGTATA 59.719 41.667 18.38 11.06 0.00 1.47
4499 4613 5.047021 AGCATCTCCAATAGCACGTGTATAT 60.047 40.000 18.38 12.88 0.00 0.86
4500 4614 5.639506 GCATCTCCAATAGCACGTGTATATT 59.360 40.000 18.38 17.69 0.00 1.28
4501 4615 6.147821 GCATCTCCAATAGCACGTGTATATTT 59.852 38.462 18.38 4.57 0.00 1.40
4502 4616 7.513132 CATCTCCAATAGCACGTGTATATTTG 58.487 38.462 18.38 16.13 0.00 2.32
4503 4617 5.989168 TCTCCAATAGCACGTGTATATTTGG 59.011 40.000 18.38 20.30 0.00 3.28
4504 4618 5.919755 TCCAATAGCACGTGTATATTTGGA 58.080 37.500 23.83 23.83 0.00 3.53
4505 4619 6.530120 TCCAATAGCACGTGTATATTTGGAT 58.470 36.000 23.83 7.11 0.00 3.41
4506 4620 6.426633 TCCAATAGCACGTGTATATTTGGATG 59.573 38.462 23.83 14.89 0.00 3.51
4507 4621 6.204688 CCAATAGCACGTGTATATTTGGATGT 59.795 38.462 18.38 0.00 0.00 3.06
4508 4622 7.290842 CAATAGCACGTGTATATTTGGATGTC 58.709 38.462 18.38 0.00 0.00 3.06
4509 4623 5.023533 AGCACGTGTATATTTGGATGTCT 57.976 39.130 18.38 0.00 0.00 3.41
4510 4624 6.156748 AGCACGTGTATATTTGGATGTCTA 57.843 37.500 18.38 0.00 0.00 2.59
4511 4625 6.759272 AGCACGTGTATATTTGGATGTCTAT 58.241 36.000 18.38 0.00 0.00 1.98
4512 4626 6.646653 AGCACGTGTATATTTGGATGTCTATG 59.353 38.462 18.38 0.00 0.00 2.23
4513 4627 6.423905 GCACGTGTATATTTGGATGTCTATGT 59.576 38.462 18.38 0.00 0.00 2.29
4514 4628 7.597369 GCACGTGTATATTTGGATGTCTATGTA 59.403 37.037 18.38 0.00 0.00 2.29
4515 4629 9.639601 CACGTGTATATTTGGATGTCTATGTAT 57.360 33.333 7.58 0.00 0.00 2.29
4547 4661 7.089770 GACAATGGTCTAAAAAGATTCCCTC 57.910 40.000 0.00 0.00 40.99 4.30
4548 4662 6.552008 ACAATGGTCTAAAAAGATTCCCTCA 58.448 36.000 0.00 0.00 0.00 3.86
4549 4663 7.184862 ACAATGGTCTAAAAAGATTCCCTCAT 58.815 34.615 0.00 0.00 0.00 2.90
4550 4664 8.336235 ACAATGGTCTAAAAAGATTCCCTCATA 58.664 33.333 0.00 0.00 0.00 2.15
4551 4665 9.359653 CAATGGTCTAAAAAGATTCCCTCATAT 57.640 33.333 0.00 0.00 0.00 1.78
4554 4668 8.998814 TGGTCTAAAAAGATTCCCTCATATACA 58.001 33.333 0.00 0.00 0.00 2.29
4555 4669 9.274206 GGTCTAAAAAGATTCCCTCATATACAC 57.726 37.037 0.00 0.00 0.00 2.90
4556 4670 9.832445 GTCTAAAAAGATTCCCTCATATACACA 57.168 33.333 0.00 0.00 0.00 3.72
4559 4673 8.697507 AAAAAGATTCCCTCATATACACATCC 57.302 34.615 0.00 0.00 0.00 3.51
4560 4674 7.392766 AAAGATTCCCTCATATACACATCCA 57.607 36.000 0.00 0.00 0.00 3.41
4561 4675 6.617782 AGATTCCCTCATATACACATCCAG 57.382 41.667 0.00 0.00 0.00 3.86
4562 4676 6.087456 AGATTCCCTCATATACACATCCAGT 58.913 40.000 0.00 0.00 0.00 4.00
4563 4677 6.560304 AGATTCCCTCATATACACATCCAGTT 59.440 38.462 0.00 0.00 0.00 3.16
4564 4678 6.575244 TTCCCTCATATACACATCCAGTTT 57.425 37.500 0.00 0.00 0.00 2.66
4565 4679 6.575244 TCCCTCATATACACATCCAGTTTT 57.425 37.500 0.00 0.00 0.00 2.43
4566 4680 6.356556 TCCCTCATATACACATCCAGTTTTG 58.643 40.000 0.00 0.00 0.00 2.44
4567 4681 5.009010 CCCTCATATACACATCCAGTTTTGC 59.991 44.000 0.00 0.00 0.00 3.68
4568 4682 5.589855 CCTCATATACACATCCAGTTTTGCA 59.410 40.000 0.00 0.00 0.00 4.08
4569 4683 6.263842 CCTCATATACACATCCAGTTTTGCAT 59.736 38.462 0.00 0.00 0.00 3.96
4570 4684 7.263100 TCATATACACATCCAGTTTTGCATC 57.737 36.000 0.00 0.00 0.00 3.91
4571 4685 6.827762 TCATATACACATCCAGTTTTGCATCA 59.172 34.615 0.00 0.00 0.00 3.07
4572 4686 3.928727 ACACATCCAGTTTTGCATCAG 57.071 42.857 0.00 0.00 0.00 2.90
4573 4687 3.489355 ACACATCCAGTTTTGCATCAGA 58.511 40.909 0.00 0.00 0.00 3.27
4574 4688 3.890756 ACACATCCAGTTTTGCATCAGAA 59.109 39.130 0.00 0.00 0.00 3.02
4575 4689 4.232221 CACATCCAGTTTTGCATCAGAAC 58.768 43.478 0.00 0.00 0.00 3.01
4576 4690 3.058016 ACATCCAGTTTTGCATCAGAACG 60.058 43.478 0.00 0.00 34.34 3.95
4577 4691 2.571212 TCCAGTTTTGCATCAGAACGT 58.429 42.857 0.00 0.00 34.34 3.99
4578 4692 2.548057 TCCAGTTTTGCATCAGAACGTC 59.452 45.455 0.00 0.00 34.34 4.34
4579 4693 2.549754 CCAGTTTTGCATCAGAACGTCT 59.450 45.455 0.00 0.00 34.34 4.18
4580 4694 3.745975 CCAGTTTTGCATCAGAACGTCTA 59.254 43.478 0.00 0.00 34.34 2.59
4581 4695 4.393062 CCAGTTTTGCATCAGAACGTCTAT 59.607 41.667 0.00 0.00 34.34 1.98
4582 4696 5.580691 CCAGTTTTGCATCAGAACGTCTATA 59.419 40.000 0.00 0.00 34.34 1.31
4583 4697 6.258727 CCAGTTTTGCATCAGAACGTCTATAT 59.741 38.462 0.00 0.00 34.34 0.86
4584 4698 7.438160 CCAGTTTTGCATCAGAACGTCTATATA 59.562 37.037 0.00 0.00 34.34 0.86
4585 4699 8.269424 CAGTTTTGCATCAGAACGTCTATATAC 58.731 37.037 0.00 0.00 34.34 1.47
4586 4700 7.979537 AGTTTTGCATCAGAACGTCTATATACA 59.020 33.333 0.00 0.00 34.34 2.29
4587 4701 7.930513 TTTGCATCAGAACGTCTATATACAG 57.069 36.000 0.00 0.00 0.00 2.74
4588 4702 6.013842 TGCATCAGAACGTCTATATACAGG 57.986 41.667 0.00 0.00 0.00 4.00
4589 4703 5.048013 TGCATCAGAACGTCTATATACAGGG 60.048 44.000 0.00 0.00 0.00 4.45
4590 4704 5.183331 GCATCAGAACGTCTATATACAGGGA 59.817 44.000 0.00 0.00 0.00 4.20
4591 4705 6.613233 CATCAGAACGTCTATATACAGGGAC 58.387 44.000 0.00 0.00 0.00 4.46
4592 4706 5.068636 TCAGAACGTCTATATACAGGGACC 58.931 45.833 0.00 0.00 0.00 4.46
4593 4707 4.825634 CAGAACGTCTATATACAGGGACCA 59.174 45.833 0.00 0.00 0.00 4.02
4594 4708 5.477291 CAGAACGTCTATATACAGGGACCAT 59.523 44.000 0.00 0.00 0.00 3.55
4595 4709 5.477291 AGAACGTCTATATACAGGGACCATG 59.523 44.000 4.17 4.17 0.00 3.66
4596 4710 4.994282 ACGTCTATATACAGGGACCATGA 58.006 43.478 14.23 0.00 0.00 3.07
4597 4711 4.765856 ACGTCTATATACAGGGACCATGAC 59.234 45.833 14.23 0.00 0.00 3.06
4598 4712 4.765339 CGTCTATATACAGGGACCATGACA 59.235 45.833 14.23 0.03 0.00 3.58
4599 4713 5.106118 CGTCTATATACAGGGACCATGACAG 60.106 48.000 14.23 2.45 0.00 3.51
4600 4714 5.186021 GTCTATATACAGGGACCATGACAGG 59.814 48.000 14.23 0.00 0.00 4.00
4601 4715 2.270434 ATACAGGGACCATGACAGGT 57.730 50.000 14.23 0.00 46.82 4.00
4602 4716 1.275666 TACAGGGACCATGACAGGTG 58.724 55.000 14.23 0.00 43.38 4.00
4603 4717 1.300963 CAGGGACCATGACAGGTGG 59.699 63.158 0.00 0.00 43.38 4.61
4604 4718 1.925455 AGGGACCATGACAGGTGGG 60.925 63.158 0.00 0.00 43.38 4.61
4605 4719 2.044946 GGACCATGACAGGTGGGC 60.045 66.667 0.00 0.00 43.38 5.36
4606 4720 2.044946 GACCATGACAGGTGGGCC 60.045 66.667 0.00 0.00 43.38 5.80
4607 4721 3.976701 GACCATGACAGGTGGGCCG 62.977 68.421 0.00 0.00 43.38 6.13
4608 4722 4.033776 CCATGACAGGTGGGCCGT 62.034 66.667 0.00 0.00 40.50 5.68
4609 4723 2.034066 CATGACAGGTGGGCCGTT 59.966 61.111 0.00 0.00 40.50 4.44
4610 4724 2.034066 ATGACAGGTGGGCCGTTG 59.966 61.111 0.00 0.00 40.50 4.10
4611 4725 4.947147 TGACAGGTGGGCCGTTGC 62.947 66.667 0.00 0.00 40.50 4.17
4612 4726 4.643387 GACAGGTGGGCCGTTGCT 62.643 66.667 0.00 0.00 40.50 3.91
4613 4727 4.954970 ACAGGTGGGCCGTTGCTG 62.955 66.667 0.00 0.00 40.50 4.41
4617 4731 4.966787 GTGGGCCGTTGCTGGGAA 62.967 66.667 0.00 0.00 37.74 3.97
4618 4732 4.659172 TGGGCCGTTGCTGGGAAG 62.659 66.667 0.00 0.00 37.74 3.46
4619 4733 4.344865 GGGCCGTTGCTGGGAAGA 62.345 66.667 0.00 0.00 37.74 2.87
4620 4734 2.747855 GGCCGTTGCTGGGAAGAG 60.748 66.667 0.00 0.00 37.74 2.85
4621 4735 2.347490 GCCGTTGCTGGGAAGAGA 59.653 61.111 0.00 0.00 33.53 3.10
4622 4736 1.302511 GCCGTTGCTGGGAAGAGAA 60.303 57.895 0.00 0.00 33.53 2.87
4623 4737 0.889186 GCCGTTGCTGGGAAGAGAAA 60.889 55.000 0.00 0.00 33.53 2.52
4624 4738 1.160137 CCGTTGCTGGGAAGAGAAAG 58.840 55.000 0.00 0.00 0.00 2.62
4625 4739 1.270839 CCGTTGCTGGGAAGAGAAAGA 60.271 52.381 0.00 0.00 0.00 2.52
4626 4740 2.494059 CGTTGCTGGGAAGAGAAAGAA 58.506 47.619 0.00 0.00 0.00 2.52
4627 4741 2.878406 CGTTGCTGGGAAGAGAAAGAAA 59.122 45.455 0.00 0.00 0.00 2.52
4628 4742 3.503748 CGTTGCTGGGAAGAGAAAGAAAT 59.496 43.478 0.00 0.00 0.00 2.17
4629 4743 4.378874 CGTTGCTGGGAAGAGAAAGAAATC 60.379 45.833 0.00 0.00 0.00 2.17
4630 4744 4.371624 TGCTGGGAAGAGAAAGAAATCA 57.628 40.909 0.00 0.00 0.00 2.57
4631 4745 4.927049 TGCTGGGAAGAGAAAGAAATCAT 58.073 39.130 0.00 0.00 0.00 2.45
4632 4746 4.703575 TGCTGGGAAGAGAAAGAAATCATG 59.296 41.667 0.00 0.00 0.00 3.07
4633 4747 4.946157 GCTGGGAAGAGAAAGAAATCATGA 59.054 41.667 0.00 0.00 0.00 3.07
4634 4748 5.163673 GCTGGGAAGAGAAAGAAATCATGAC 60.164 44.000 0.00 0.00 0.00 3.06
4635 4749 6.131972 TGGGAAGAGAAAGAAATCATGACT 57.868 37.500 0.00 0.00 0.00 3.41
4636 4750 7.257790 TGGGAAGAGAAAGAAATCATGACTA 57.742 36.000 0.00 0.00 0.00 2.59
4637 4751 7.106239 TGGGAAGAGAAAGAAATCATGACTAC 58.894 38.462 0.00 0.00 0.00 2.73
4638 4752 7.106239 GGGAAGAGAAAGAAATCATGACTACA 58.894 38.462 0.00 0.00 0.00 2.74
4639 4753 7.279758 GGGAAGAGAAAGAAATCATGACTACAG 59.720 40.741 0.00 0.00 0.00 2.74
4640 4754 7.201600 GGAAGAGAAAGAAATCATGACTACAGC 60.202 40.741 0.00 0.00 0.00 4.40
4641 4755 6.945218 AGAGAAAGAAATCATGACTACAGCT 58.055 36.000 0.00 0.00 0.00 4.24
4642 4756 6.817641 AGAGAAAGAAATCATGACTACAGCTG 59.182 38.462 13.48 13.48 0.00 4.24
4643 4757 6.705302 AGAAAGAAATCATGACTACAGCTGA 58.295 36.000 23.35 2.95 0.00 4.26
4644 4758 6.817641 AGAAAGAAATCATGACTACAGCTGAG 59.182 38.462 23.35 15.55 0.00 3.35
4645 4759 5.674052 AGAAATCATGACTACAGCTGAGT 57.326 39.130 23.35 18.74 0.00 3.41
4646 4760 6.047511 AGAAATCATGACTACAGCTGAGTT 57.952 37.500 23.35 2.67 29.91 3.01
4647 4761 6.471146 AGAAATCATGACTACAGCTGAGTTT 58.529 36.000 23.35 9.14 28.26 2.66
4648 4762 7.615403 AGAAATCATGACTACAGCTGAGTTTA 58.385 34.615 23.35 12.35 28.26 2.01
4649 4763 7.763528 AGAAATCATGACTACAGCTGAGTTTAG 59.236 37.037 23.35 13.92 28.26 1.85
4650 4764 6.782082 ATCATGACTACAGCTGAGTTTAGA 57.218 37.500 23.35 16.09 0.00 2.10
4651 4765 5.955488 TCATGACTACAGCTGAGTTTAGAC 58.045 41.667 23.35 12.11 0.00 2.59
4652 4766 4.421033 TGACTACAGCTGAGTTTAGACG 57.579 45.455 23.35 0.00 0.00 4.18
4653 4767 4.070009 TGACTACAGCTGAGTTTAGACGA 58.930 43.478 23.35 1.08 0.00 4.20
4654 4768 4.083431 TGACTACAGCTGAGTTTAGACGAC 60.083 45.833 23.35 5.73 0.00 4.34
4655 4769 2.333389 ACAGCTGAGTTTAGACGACG 57.667 50.000 23.35 0.00 0.00 5.12
4656 4770 0.985549 CAGCTGAGTTTAGACGACGC 59.014 55.000 8.42 0.00 0.00 5.19
4657 4771 0.109226 AGCTGAGTTTAGACGACGCC 60.109 55.000 0.00 0.00 0.00 5.68
4658 4772 0.109226 GCTGAGTTTAGACGACGCCT 60.109 55.000 0.00 0.00 0.00 5.52
4659 4773 1.669211 GCTGAGTTTAGACGACGCCTT 60.669 52.381 0.00 0.00 0.00 4.35
4660 4774 2.251893 CTGAGTTTAGACGACGCCTTC 58.748 52.381 0.00 0.00 0.00 3.46
4661 4775 1.610038 TGAGTTTAGACGACGCCTTCA 59.390 47.619 0.00 0.00 0.00 3.02
4662 4776 1.984297 GAGTTTAGACGACGCCTTCAC 59.016 52.381 0.00 0.00 0.00 3.18
4663 4777 1.338973 AGTTTAGACGACGCCTTCACA 59.661 47.619 0.00 0.00 0.00 3.58
4664 4778 2.029290 AGTTTAGACGACGCCTTCACAT 60.029 45.455 0.00 0.00 0.00 3.21
4665 4779 2.735134 GTTTAGACGACGCCTTCACATT 59.265 45.455 0.00 0.00 0.00 2.71
4666 4780 1.990799 TAGACGACGCCTTCACATTG 58.009 50.000 0.00 0.00 0.00 2.82
4667 4781 0.033504 AGACGACGCCTTCACATTGT 59.966 50.000 0.00 0.00 0.00 2.71
4668 4782 0.438830 GACGACGCCTTCACATTGTC 59.561 55.000 0.00 0.00 0.00 3.18
4669 4783 0.949105 ACGACGCCTTCACATTGTCC 60.949 55.000 0.00 0.00 0.00 4.02
4670 4784 0.948623 CGACGCCTTCACATTGTCCA 60.949 55.000 0.00 0.00 0.00 4.02
4671 4785 0.798776 GACGCCTTCACATTGTCCAG 59.201 55.000 0.00 0.00 0.00 3.86
4672 4786 0.606401 ACGCCTTCACATTGTCCAGG 60.606 55.000 6.46 6.46 0.00 4.45
4673 4787 1.885871 GCCTTCACATTGTCCAGGC 59.114 57.895 16.47 16.47 43.26 4.85
4674 4788 1.926511 GCCTTCACATTGTCCAGGCG 61.927 60.000 16.47 0.00 40.74 5.52
4675 4789 0.606401 CCTTCACATTGTCCAGGCGT 60.606 55.000 0.00 0.00 0.00 5.68
4676 4790 0.518636 CTTCACATTGTCCAGGCGTG 59.481 55.000 0.00 0.00 0.00 5.34
4677 4791 0.888736 TTCACATTGTCCAGGCGTGG 60.889 55.000 19.57 19.57 46.63 4.94
4684 4798 3.156714 TCCAGGCGTGGACATTGT 58.843 55.556 23.92 0.00 46.77 2.71
4685 4799 1.003839 TCCAGGCGTGGACATTGTC 60.004 57.895 23.92 8.34 46.77 3.18
4686 4800 2.779951 TCCAGGCGTGGACATTGTCG 62.780 60.000 23.92 1.59 46.77 4.35
4687 4801 1.374125 CAGGCGTGGACATTGTCGA 60.374 57.895 10.56 3.99 32.65 4.20
4688 4802 1.079819 AGGCGTGGACATTGTCGAG 60.080 57.895 10.56 5.72 32.65 4.04
4689 4803 2.100631 GGCGTGGACATTGTCGAGG 61.101 63.158 14.72 14.72 32.65 4.63
4690 4804 1.374252 GCGTGGACATTGTCGAGGT 60.374 57.895 18.51 0.00 32.65 3.85
4691 4805 1.352156 GCGTGGACATTGTCGAGGTC 61.352 60.000 18.51 10.16 38.31 3.85
4692 4806 1.071019 CGTGGACATTGTCGAGGTCG 61.071 60.000 10.56 3.71 39.90 4.79
4705 4819 3.552875 TCGAGGTCGATTTAGAGGATGT 58.447 45.455 0.00 0.00 44.22 3.06
4706 4820 3.315470 TCGAGGTCGATTTAGAGGATGTG 59.685 47.826 0.00 0.00 44.22 3.21
4707 4821 3.066900 CGAGGTCGATTTAGAGGATGTGT 59.933 47.826 0.00 0.00 43.02 3.72
4708 4822 4.275196 CGAGGTCGATTTAGAGGATGTGTA 59.725 45.833 0.00 0.00 43.02 2.90
4709 4823 5.048643 CGAGGTCGATTTAGAGGATGTGTAT 60.049 44.000 0.00 0.00 43.02 2.29
4710 4824 6.148976 CGAGGTCGATTTAGAGGATGTGTATA 59.851 42.308 0.00 0.00 43.02 1.47
4711 4825 7.148222 CGAGGTCGATTTAGAGGATGTGTATAT 60.148 40.741 0.00 0.00 43.02 0.86
4712 4826 8.423906 AGGTCGATTTAGAGGATGTGTATATT 57.576 34.615 0.00 0.00 0.00 1.28
4713 4827 8.871125 AGGTCGATTTAGAGGATGTGTATATTT 58.129 33.333 0.00 0.00 0.00 1.40
4714 4828 8.926710 GGTCGATTTAGAGGATGTGTATATTTG 58.073 37.037 0.00 0.00 0.00 2.32
4715 4829 8.926710 GTCGATTTAGAGGATGTGTATATTTGG 58.073 37.037 0.00 0.00 0.00 3.28
4716 4830 8.866093 TCGATTTAGAGGATGTGTATATTTGGA 58.134 33.333 0.00 0.00 0.00 3.53
4717 4831 8.926710 CGATTTAGAGGATGTGTATATTTGGAC 58.073 37.037 0.00 0.00 0.00 4.02
4718 4832 8.833231 ATTTAGAGGATGTGTATATTTGGACG 57.167 34.615 0.00 0.00 0.00 4.79
4719 4833 7.591421 TTAGAGGATGTGTATATTTGGACGA 57.409 36.000 0.00 0.00 0.00 4.20
4720 4834 5.844004 AGAGGATGTGTATATTTGGACGAC 58.156 41.667 0.00 0.00 0.00 4.34
4721 4835 4.957296 AGGATGTGTATATTTGGACGACC 58.043 43.478 0.00 0.00 0.00 4.79
4722 4836 4.407621 AGGATGTGTATATTTGGACGACCA 59.592 41.667 1.37 1.37 45.34 4.02
4723 4837 5.071788 AGGATGTGTATATTTGGACGACCAT 59.928 40.000 7.61 0.00 46.34 3.55
4724 4838 6.269077 AGGATGTGTATATTTGGACGACCATA 59.731 38.462 7.61 3.12 46.34 2.74
4725 4839 7.038302 AGGATGTGTATATTTGGACGACCATAT 60.038 37.037 7.61 11.10 46.34 1.78
4726 4840 8.255206 GGATGTGTATATTTGGACGACCATATA 58.745 37.037 16.40 16.40 46.34 0.86
4727 4841 9.302345 GATGTGTATATTTGGACGACCATATAG 57.698 37.037 18.22 0.00 46.34 1.31
4728 4842 8.411991 TGTGTATATTTGGACGACCATATAGA 57.588 34.615 18.22 13.12 46.34 1.98
4729 4843 8.301720 TGTGTATATTTGGACGACCATATAGAC 58.698 37.037 23.98 23.98 44.55 2.59
4732 4846 9.355215 GTATATTTGGACGACCATATAGACAAG 57.645 37.037 24.99 0.00 44.16 3.16
4733 4847 3.728076 TGGACGACCATATAGACAAGC 57.272 47.619 1.37 0.00 41.77 4.01
4734 4848 3.296854 TGGACGACCATATAGACAAGCT 58.703 45.455 1.37 0.00 41.77 3.74
4735 4849 3.068165 TGGACGACCATATAGACAAGCTG 59.932 47.826 1.37 0.00 41.77 4.24
4736 4850 3.068307 GGACGACCATATAGACAAGCTGT 59.932 47.826 0.00 0.00 35.97 4.40
4737 4851 4.441634 GGACGACCATATAGACAAGCTGTT 60.442 45.833 0.00 0.00 35.97 3.16
4738 4852 4.433615 ACGACCATATAGACAAGCTGTTG 58.566 43.478 0.00 0.00 39.82 3.33
4739 4853 3.804325 CGACCATATAGACAAGCTGTTGG 59.196 47.826 0.00 0.00 38.07 3.77
4740 4854 4.441495 CGACCATATAGACAAGCTGTTGGA 60.441 45.833 9.51 0.00 38.07 3.53
4741 4855 4.770795 ACCATATAGACAAGCTGTTGGAC 58.229 43.478 9.51 0.00 38.07 4.02
4742 4856 3.804325 CCATATAGACAAGCTGTTGGACG 59.196 47.826 0.00 0.00 38.07 4.79
4743 4857 1.726853 ATAGACAAGCTGTTGGACGC 58.273 50.000 0.00 0.00 38.07 5.19
4744 4858 0.320421 TAGACAAGCTGTTGGACGCC 60.320 55.000 0.00 0.00 38.07 5.68
4745 4859 1.598130 GACAAGCTGTTGGACGCCT 60.598 57.895 0.00 0.00 38.07 5.52
4746 4860 1.845809 GACAAGCTGTTGGACGCCTG 61.846 60.000 0.00 0.00 38.07 4.85
4747 4861 1.893808 CAAGCTGTTGGACGCCTGT 60.894 57.895 0.00 0.00 0.00 4.00
4748 4862 1.152963 AAGCTGTTGGACGCCTGTT 60.153 52.632 0.00 0.00 0.00 3.16
4749 4863 0.751643 AAGCTGTTGGACGCCTGTTT 60.752 50.000 0.00 0.00 0.00 2.83
4750 4864 0.751643 AGCTGTTGGACGCCTGTTTT 60.752 50.000 0.00 0.00 0.00 2.43
4751 4865 0.594796 GCTGTTGGACGCCTGTTTTG 60.595 55.000 0.00 0.00 0.00 2.44
4752 4866 0.030638 CTGTTGGACGCCTGTTTTGG 59.969 55.000 0.00 0.00 0.00 3.28
4753 4867 1.362355 GTTGGACGCCTGTTTTGGG 59.638 57.895 0.00 0.00 0.00 4.12
4754 4868 2.494530 TTGGACGCCTGTTTTGGGC 61.495 57.895 0.00 0.00 45.57 5.36
4755 4869 2.597510 GGACGCCTGTTTTGGGCT 60.598 61.111 3.25 0.00 46.73 5.19
4756 4870 2.626780 GGACGCCTGTTTTGGGCTC 61.627 63.158 3.25 0.61 46.73 4.70
4757 4871 1.896660 GACGCCTGTTTTGGGCTCA 60.897 57.895 3.25 0.00 46.73 4.26
4758 4872 1.228552 ACGCCTGTTTTGGGCTCAT 60.229 52.632 0.00 0.00 46.73 2.90
4759 4873 1.213537 CGCCTGTTTTGGGCTCATG 59.786 57.895 0.00 0.00 46.73 3.07
4760 4874 1.526575 CGCCTGTTTTGGGCTCATGT 61.527 55.000 0.00 0.00 46.73 3.21
4761 4875 0.244721 GCCTGTTTTGGGCTCATGTC 59.755 55.000 0.00 0.00 45.57 3.06
4762 4876 0.523072 CCTGTTTTGGGCTCATGTCG 59.477 55.000 0.00 0.00 0.00 4.35
4763 4877 1.238439 CTGTTTTGGGCTCATGTCGT 58.762 50.000 0.00 0.00 0.00 4.34
4764 4878 0.950836 TGTTTTGGGCTCATGTCGTG 59.049 50.000 0.00 0.00 0.00 4.35
4765 4879 0.240945 GTTTTGGGCTCATGTCGTGG 59.759 55.000 0.00 0.00 0.00 4.94
4766 4880 0.109532 TTTTGGGCTCATGTCGTGGA 59.890 50.000 0.00 0.00 0.00 4.02
4767 4881 0.109532 TTTGGGCTCATGTCGTGGAA 59.890 50.000 0.00 0.00 0.00 3.53
4768 4882 0.109532 TTGGGCTCATGTCGTGGAAA 59.890 50.000 0.00 0.00 0.00 3.13
4769 4883 0.109532 TGGGCTCATGTCGTGGAAAA 59.890 50.000 0.00 0.00 0.00 2.29
4770 4884 0.521735 GGGCTCATGTCGTGGAAAAC 59.478 55.000 0.00 0.00 0.00 2.43
4785 4899 5.657474 GTGGAAAACGAGTATAGACATCCA 58.343 41.667 0.00 0.00 32.33 3.41
4786 4900 6.281405 GTGGAAAACGAGTATAGACATCCAT 58.719 40.000 0.00 0.00 36.86 3.41
4787 4901 7.431249 GTGGAAAACGAGTATAGACATCCATA 58.569 38.462 0.00 0.00 36.86 2.74
4788 4902 8.088981 GTGGAAAACGAGTATAGACATCCATAT 58.911 37.037 0.00 0.00 36.86 1.78
4789 4903 9.304335 TGGAAAACGAGTATAGACATCCATATA 57.696 33.333 0.00 0.00 29.93 0.86
4790 4904 9.790389 GGAAAACGAGTATAGACATCCATATAG 57.210 37.037 0.00 0.00 0.00 1.31
4793 4907 9.516546 AAACGAGTATAGACATCCATATAGACA 57.483 33.333 0.00 0.00 0.00 3.41
4794 4908 9.516546 AACGAGTATAGACATCCATATAGACAA 57.483 33.333 0.00 0.00 0.00 3.18
4795 4909 9.168451 ACGAGTATAGACATCCATATAGACAAG 57.832 37.037 0.00 0.00 0.00 3.16
4796 4910 8.126074 CGAGTATAGACATCCATATAGACAAGC 58.874 40.741 0.00 0.00 0.00 4.01
4797 4911 9.184523 GAGTATAGACATCCATATAGACAAGCT 57.815 37.037 0.00 0.00 0.00 3.74
4802 4916 7.619050 AGACATCCATATAGACAAGCTATTGG 58.381 38.462 0.00 0.00 40.30 3.16
4803 4917 7.455953 AGACATCCATATAGACAAGCTATTGGA 59.544 37.037 13.58 13.58 43.21 3.53
4804 4918 7.619050 ACATCCATATAGACAAGCTATTGGAG 58.381 38.462 15.14 11.78 42.82 3.86
4805 4919 7.455953 ACATCCATATAGACAAGCTATTGGAGA 59.544 37.037 15.14 0.00 42.82 3.71
4806 4920 8.484575 CATCCATATAGACAAGCTATTGGAGAT 58.515 37.037 15.14 0.00 42.82 2.75
4807 4921 7.845037 TCCATATAGACAAGCTATTGGAGATG 58.155 38.462 0.00 0.00 39.33 2.90
4808 4922 6.538021 CCATATAGACAAGCTATTGGAGATGC 59.462 42.308 0.00 0.00 40.30 3.91
4809 4923 5.822132 ATAGACAAGCTATTGGAGATGCT 57.178 39.130 0.00 0.00 40.97 3.79
4810 4924 4.070630 AGACAAGCTATTGGAGATGCTC 57.929 45.455 0.00 0.00 40.97 4.26
5246 6403 5.531659 TGTTGCTCGTAAAGGTAAATTTGGA 59.468 36.000 0.00 0.00 0.00 3.53
5253 6410 7.662897 TCGTAAAGGTAAATTTGGAAAGCATT 58.337 30.769 0.00 0.00 0.00 3.56
5315 6715 8.635765 GGATGCTCTCCCAAACATATTATTTA 57.364 34.615 0.00 0.00 38.19 1.40
5478 6882 7.541162 TCCAATTCTCTGTTTATTCTTGCATG 58.459 34.615 0.00 0.00 0.00 4.06
5792 7507 5.931441 AAGTAACTGCACATGACTTTCTC 57.069 39.130 0.00 0.00 0.00 2.87
5793 7508 4.960938 AGTAACTGCACATGACTTTCTCA 58.039 39.130 0.00 0.00 0.00 3.27
6026 7749 5.091431 GCTGCTTGCTTGTTGAAGTATTAG 58.909 41.667 0.00 0.00 38.95 1.73
6042 7765 9.917129 TGAAGTATTAGTTTAATTCACGACTGA 57.083 29.630 0.00 0.00 32.86 3.41
6510 8235 2.124320 AAGTTGCGGTGCACCACT 60.124 55.556 34.16 26.21 38.71 4.00
6617 8342 2.345760 CCTGCCTGTGCCATGTTCC 61.346 63.158 0.00 0.00 36.33 3.62
6719 8445 7.927048 AGTTGTAGTGTGTTTTGAACTTATCC 58.073 34.615 0.00 0.00 0.00 2.59
6772 8826 4.456566 GCACTGTTCCGGGAATACTTTTAA 59.543 41.667 13.48 0.00 0.00 1.52
6773 8827 5.124936 GCACTGTTCCGGGAATACTTTTAAT 59.875 40.000 13.48 0.00 0.00 1.40
6774 8828 6.316890 GCACTGTTCCGGGAATACTTTTAATA 59.683 38.462 13.48 0.00 0.00 0.98
6819 8873 2.392933 TTGATTGTTTGTTCGTCGCC 57.607 45.000 0.00 0.00 0.00 5.54
6825 8879 2.600475 TTTGTTCGTCGCCCTTCGC 61.600 57.895 0.00 0.00 38.27 4.70
6902 8966 0.393537 CATTGTCACTCTGCTCCCCC 60.394 60.000 0.00 0.00 0.00 5.40
6952 9016 3.414759 TGGGCTAGGAACAAGGAGATA 57.585 47.619 0.00 0.00 0.00 1.98
7023 9087 4.390297 GGCTATGCGAAATACCTCATCTTC 59.610 45.833 0.00 0.00 0.00 2.87
7049 9113 2.495084 GACGGCTCTTTCCTGTTTCTT 58.505 47.619 0.00 0.00 0.00 2.52
7251 9315 3.629142 AACTACCACATTACAGGAGGC 57.371 47.619 0.00 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 9.998106 AGTTTTCTAACTATAGACATGTGTTGT 57.002 29.630 1.15 0.00 42.73 3.32
64 65 8.842358 TCGTTAATCAGAGATGGTTAAGTTTT 57.158 30.769 0.00 0.00 0.00 2.43
79 80 7.117236 CCTCTACTAGACTAGCTCGTTAATCAG 59.883 44.444 9.52 0.00 0.00 2.90
109 110 3.454812 AGACAAAACACTGTGTCCCTAGT 59.545 43.478 14.68 8.75 44.30 2.57
115 116 6.649141 TGGATACATAGACAAAACACTGTGTC 59.351 38.462 14.68 0.98 46.17 3.67
219 220 5.897250 CCCTAGGGGCAATAATAAAGTTGTT 59.103 40.000 21.44 0.00 35.35 2.83
251 252 8.039538 TGATATGAAGATATGAGATGGTGAAGC 58.960 37.037 0.00 0.00 0.00 3.86
340 342 3.439857 ACATTTTGGAAGCAGCTCCTA 57.560 42.857 0.00 0.00 36.35 2.94
409 411 5.119588 AAGCATGAAATGTTTTGCAAGATCG 59.880 36.000 0.00 0.00 45.92 3.69
492 494 6.817765 AGGTGATGACACGACATAAAATTT 57.182 33.333 0.00 0.00 46.77 1.82
516 518 0.830444 AGCGTGTTGGGTGTCCTAGA 60.830 55.000 0.00 0.00 0.00 2.43
538 540 0.955919 GGAGCAAGGAAGGTCAACGG 60.956 60.000 0.00 0.00 37.74 4.44
678 680 0.253160 AGACCTACAAGGGGCATCCA 60.253 55.000 0.00 0.00 40.58 3.41
1113 1144 2.511600 CGAACGCCCAAGCCCTAG 60.512 66.667 0.00 0.00 34.57 3.02
1295 1326 2.544694 CGTGCACAATAGCTCTAGGAGG 60.545 54.545 18.64 0.00 34.99 4.30
1568 1602 2.573369 CTTCATCATCCCCTTCAGCTG 58.427 52.381 7.63 7.63 0.00 4.24
1737 1771 5.963176 TTGCTCAAGATTTTGTCTGCATA 57.037 34.783 11.95 0.00 37.23 3.14
1745 1779 5.299148 TCACCCATTTTGCTCAAGATTTTG 58.701 37.500 0.00 0.00 35.57 2.44
2136 2172 9.033481 CAGAAGAAAATCAAACTTACAATGCAA 57.967 29.630 0.00 0.00 0.00 4.08
2209 2245 4.526650 TCAATGCGCTATAGGAGGTGAATA 59.473 41.667 9.73 0.00 0.00 1.75
2822 2864 9.403110 GTATGCCTAATTTCAAAATAGCAGATG 57.597 33.333 11.14 0.00 34.61 2.90
3161 3208 4.396166 ACAAGAGTATTAACTGGCATGCAC 59.604 41.667 21.36 9.64 35.56 4.57
3224 3271 6.222389 CAACACTATTCTGGAAATGGCAAAA 58.778 36.000 0.00 0.00 0.00 2.44
3525 3606 6.731292 AAAACACCTAGGAAAGAAGCAATT 57.269 33.333 17.98 0.00 0.00 2.32
3530 3611 7.803279 AGTACAAAAACACCTAGGAAAGAAG 57.197 36.000 17.98 2.05 0.00 2.85
3561 3642 5.661056 TGGCCATCTATAAGATCTTACCG 57.339 43.478 17.35 11.15 31.32 4.02
3605 3686 9.690913 GTAAATATACCCCTCTTAAAAACACCT 57.309 33.333 0.00 0.00 0.00 4.00
3966 4048 9.482627 ACAAAGAAAGAACAGAGTTCAGTATAG 57.517 33.333 11.92 0.32 0.00 1.31
4239 4348 4.729881 ACAATGCCTCCCCCTATAAACTTA 59.270 41.667 0.00 0.00 0.00 2.24
4471 4585 3.384789 ACGTGCTATTGGAGATGCTCTAA 59.615 43.478 0.00 0.00 35.57 2.10
4472 4586 2.959030 ACGTGCTATTGGAGATGCTCTA 59.041 45.455 0.00 0.00 0.00 2.43
4473 4587 1.759445 ACGTGCTATTGGAGATGCTCT 59.241 47.619 0.00 0.00 0.00 4.09
4474 4588 1.863454 CACGTGCTATTGGAGATGCTC 59.137 52.381 0.82 0.00 0.00 4.26
4475 4589 1.208052 ACACGTGCTATTGGAGATGCT 59.792 47.619 17.22 0.00 0.00 3.79
4476 4590 1.656652 ACACGTGCTATTGGAGATGC 58.343 50.000 17.22 0.00 0.00 3.91
4477 4591 7.360353 CCAAATATACACGTGCTATTGGAGATG 60.360 40.741 23.67 16.64 0.00 2.90
4478 4592 6.650807 CCAAATATACACGTGCTATTGGAGAT 59.349 38.462 23.67 8.95 0.00 2.75
4479 4593 5.989168 CCAAATATACACGTGCTATTGGAGA 59.011 40.000 23.67 6.66 0.00 3.71
4480 4594 5.989168 TCCAAATATACACGTGCTATTGGAG 59.011 40.000 25.28 17.02 0.00 3.86
4481 4595 5.919755 TCCAAATATACACGTGCTATTGGA 58.080 37.500 25.28 25.28 0.00 3.53
4482 4596 6.204688 ACATCCAAATATACACGTGCTATTGG 59.795 38.462 22.74 22.74 0.00 3.16
4483 4597 7.171508 AGACATCCAAATATACACGTGCTATTG 59.828 37.037 17.22 13.31 0.00 1.90
4484 4598 7.217200 AGACATCCAAATATACACGTGCTATT 58.783 34.615 17.22 15.72 0.00 1.73
4485 4599 6.759272 AGACATCCAAATATACACGTGCTAT 58.241 36.000 17.22 14.48 0.00 2.97
4486 4600 6.156748 AGACATCCAAATATACACGTGCTA 57.843 37.500 17.22 8.24 0.00 3.49
4487 4601 5.023533 AGACATCCAAATATACACGTGCT 57.976 39.130 17.22 5.91 0.00 4.40
4488 4602 6.423905 ACATAGACATCCAAATATACACGTGC 59.576 38.462 17.22 0.00 0.00 5.34
4489 4603 7.946655 ACATAGACATCCAAATATACACGTG 57.053 36.000 15.48 15.48 0.00 4.49
4523 4637 6.659242 TGAGGGAATCTTTTTAGACCATTGTC 59.341 38.462 0.00 0.00 42.09 3.18
4524 4638 6.552008 TGAGGGAATCTTTTTAGACCATTGT 58.448 36.000 0.00 0.00 0.00 2.71
4525 4639 7.651027 ATGAGGGAATCTTTTTAGACCATTG 57.349 36.000 0.00 0.00 0.00 2.82
4528 4642 8.998814 TGTATATGAGGGAATCTTTTTAGACCA 58.001 33.333 0.00 0.00 0.00 4.02
4529 4643 9.274206 GTGTATATGAGGGAATCTTTTTAGACC 57.726 37.037 0.00 0.00 0.00 3.85
4530 4644 9.832445 TGTGTATATGAGGGAATCTTTTTAGAC 57.168 33.333 0.00 0.00 0.00 2.59
4533 4647 9.793259 GGATGTGTATATGAGGGAATCTTTTTA 57.207 33.333 0.00 0.00 0.00 1.52
4534 4648 8.281531 TGGATGTGTATATGAGGGAATCTTTTT 58.718 33.333 0.00 0.00 0.00 1.94
4535 4649 7.815383 TGGATGTGTATATGAGGGAATCTTTT 58.185 34.615 0.00 0.00 0.00 2.27
4536 4650 7.072961 ACTGGATGTGTATATGAGGGAATCTTT 59.927 37.037 0.00 0.00 0.00 2.52
4537 4651 6.560304 ACTGGATGTGTATATGAGGGAATCTT 59.440 38.462 0.00 0.00 0.00 2.40
4538 4652 6.087456 ACTGGATGTGTATATGAGGGAATCT 58.913 40.000 0.00 0.00 0.00 2.40
4539 4653 6.365970 ACTGGATGTGTATATGAGGGAATC 57.634 41.667 0.00 0.00 0.00 2.52
4540 4654 6.770286 AACTGGATGTGTATATGAGGGAAT 57.230 37.500 0.00 0.00 0.00 3.01
4541 4655 6.575244 AAACTGGATGTGTATATGAGGGAA 57.425 37.500 0.00 0.00 0.00 3.97
4542 4656 6.356556 CAAAACTGGATGTGTATATGAGGGA 58.643 40.000 0.00 0.00 0.00 4.20
4543 4657 5.009010 GCAAAACTGGATGTGTATATGAGGG 59.991 44.000 0.00 0.00 0.00 4.30
4544 4658 5.589855 TGCAAAACTGGATGTGTATATGAGG 59.410 40.000 0.00 0.00 0.00 3.86
4545 4659 6.682423 TGCAAAACTGGATGTGTATATGAG 57.318 37.500 0.00 0.00 0.00 2.90
4546 4660 6.827762 TGATGCAAAACTGGATGTGTATATGA 59.172 34.615 0.00 0.00 0.00 2.15
4547 4661 7.012610 TCTGATGCAAAACTGGATGTGTATATG 59.987 37.037 0.00 0.00 0.00 1.78
4548 4662 7.056006 TCTGATGCAAAACTGGATGTGTATAT 58.944 34.615 0.00 0.00 0.00 0.86
4549 4663 6.413892 TCTGATGCAAAACTGGATGTGTATA 58.586 36.000 0.00 0.00 0.00 1.47
4550 4664 5.255687 TCTGATGCAAAACTGGATGTGTAT 58.744 37.500 0.00 0.00 0.00 2.29
4551 4665 4.650734 TCTGATGCAAAACTGGATGTGTA 58.349 39.130 0.00 0.00 0.00 2.90
4552 4666 3.489355 TCTGATGCAAAACTGGATGTGT 58.511 40.909 0.00 0.00 0.00 3.72
4553 4667 4.232221 GTTCTGATGCAAAACTGGATGTG 58.768 43.478 0.00 0.00 0.00 3.21
4554 4668 3.058016 CGTTCTGATGCAAAACTGGATGT 60.058 43.478 0.00 0.00 0.00 3.06
4555 4669 3.058016 ACGTTCTGATGCAAAACTGGATG 60.058 43.478 0.00 0.00 0.00 3.51
4556 4670 3.149196 ACGTTCTGATGCAAAACTGGAT 58.851 40.909 0.00 0.00 0.00 3.41
4557 4671 2.548057 GACGTTCTGATGCAAAACTGGA 59.452 45.455 0.00 0.00 0.00 3.86
4558 4672 2.549754 AGACGTTCTGATGCAAAACTGG 59.450 45.455 0.00 0.00 0.00 4.00
4559 4673 3.885484 AGACGTTCTGATGCAAAACTG 57.115 42.857 0.00 0.00 0.00 3.16
4560 4674 7.979537 TGTATATAGACGTTCTGATGCAAAACT 59.020 33.333 0.00 0.00 0.00 2.66
4561 4675 8.126871 TGTATATAGACGTTCTGATGCAAAAC 57.873 34.615 0.00 0.00 0.00 2.43
4562 4676 7.438160 CCTGTATATAGACGTTCTGATGCAAAA 59.562 37.037 0.00 0.00 0.00 2.44
4563 4677 6.923508 CCTGTATATAGACGTTCTGATGCAAA 59.076 38.462 0.00 0.00 0.00 3.68
4564 4678 6.447162 CCTGTATATAGACGTTCTGATGCAA 58.553 40.000 0.00 0.00 0.00 4.08
4565 4679 5.048013 CCCTGTATATAGACGTTCTGATGCA 60.048 44.000 0.00 0.00 0.00 3.96
4566 4680 5.183331 TCCCTGTATATAGACGTTCTGATGC 59.817 44.000 0.00 0.00 0.00 3.91
4567 4681 6.349445 GGTCCCTGTATATAGACGTTCTGATG 60.349 46.154 0.00 0.00 0.00 3.07
4568 4682 5.711036 GGTCCCTGTATATAGACGTTCTGAT 59.289 44.000 0.00 0.00 0.00 2.90
4569 4683 5.068636 GGTCCCTGTATATAGACGTTCTGA 58.931 45.833 0.00 0.00 0.00 3.27
4570 4684 4.825634 TGGTCCCTGTATATAGACGTTCTG 59.174 45.833 0.00 0.00 0.00 3.02
4571 4685 5.057843 TGGTCCCTGTATATAGACGTTCT 57.942 43.478 0.00 0.00 0.00 3.01
4572 4686 5.475909 TCATGGTCCCTGTATATAGACGTTC 59.524 44.000 0.00 0.00 0.00 3.95
4573 4687 5.243283 GTCATGGTCCCTGTATATAGACGTT 59.757 44.000 0.00 0.00 0.00 3.99
4574 4688 4.765856 GTCATGGTCCCTGTATATAGACGT 59.234 45.833 0.00 0.00 0.00 4.34
4575 4689 4.765339 TGTCATGGTCCCTGTATATAGACG 59.235 45.833 0.00 0.00 0.00 4.18
4576 4690 5.186021 CCTGTCATGGTCCCTGTATATAGAC 59.814 48.000 0.00 0.00 0.00 2.59
4577 4691 5.162870 ACCTGTCATGGTCCCTGTATATAGA 60.163 44.000 0.00 0.00 34.86 1.98
4578 4692 5.047021 CACCTGTCATGGTCCCTGTATATAG 60.047 48.000 0.00 0.00 38.45 1.31
4579 4693 4.838423 CACCTGTCATGGTCCCTGTATATA 59.162 45.833 0.00 0.00 38.45 0.86
4580 4694 3.648067 CACCTGTCATGGTCCCTGTATAT 59.352 47.826 0.00 0.00 38.45 0.86
4581 4695 3.038280 CACCTGTCATGGTCCCTGTATA 58.962 50.000 0.00 0.00 38.45 1.47
4582 4696 1.839994 CACCTGTCATGGTCCCTGTAT 59.160 52.381 0.00 0.00 38.45 2.29
4583 4697 1.275666 CACCTGTCATGGTCCCTGTA 58.724 55.000 0.00 0.00 38.45 2.74
4584 4698 1.492133 CCACCTGTCATGGTCCCTGT 61.492 60.000 0.00 0.00 38.45 4.00
4585 4699 1.300963 CCACCTGTCATGGTCCCTG 59.699 63.158 0.00 0.00 38.45 4.45
4586 4700 1.925455 CCCACCTGTCATGGTCCCT 60.925 63.158 0.00 0.00 38.45 4.20
4587 4701 2.677228 CCCACCTGTCATGGTCCC 59.323 66.667 0.00 0.00 38.45 4.46
4588 4702 2.044946 GCCCACCTGTCATGGTCC 60.045 66.667 0.00 0.00 38.45 4.46
4589 4703 2.044946 GGCCCACCTGTCATGGTC 60.045 66.667 0.00 0.00 38.45 4.02
4590 4704 4.033776 CGGCCCACCTGTCATGGT 62.034 66.667 0.00 0.00 41.77 3.55
4591 4705 3.567579 AACGGCCCACCTGTCATGG 62.568 63.158 0.00 0.00 36.94 3.66
4592 4706 2.034066 AACGGCCCACCTGTCATG 59.966 61.111 0.00 0.00 0.00 3.07
4593 4707 2.034066 CAACGGCCCACCTGTCAT 59.966 61.111 0.00 0.00 0.00 3.06
4594 4708 4.947147 GCAACGGCCCACCTGTCA 62.947 66.667 0.00 0.00 0.00 3.58
4595 4709 4.643387 AGCAACGGCCCACCTGTC 62.643 66.667 0.00 0.00 42.56 3.51
4596 4710 4.954970 CAGCAACGGCCCACCTGT 62.955 66.667 0.00 0.00 42.56 4.00
4600 4714 4.966787 TTCCCAGCAACGGCCCAC 62.967 66.667 0.00 0.00 42.56 4.61
4601 4715 4.659172 CTTCCCAGCAACGGCCCA 62.659 66.667 0.00 0.00 42.56 5.36
4602 4716 4.344865 TCTTCCCAGCAACGGCCC 62.345 66.667 0.00 0.00 42.56 5.80
4603 4717 2.747855 CTCTTCCCAGCAACGGCC 60.748 66.667 0.00 0.00 42.56 6.13
4604 4718 0.889186 TTTCTCTTCCCAGCAACGGC 60.889 55.000 0.00 0.00 41.61 5.68
4605 4719 1.160137 CTTTCTCTTCCCAGCAACGG 58.840 55.000 0.00 0.00 0.00 4.44
4606 4720 2.169832 TCTTTCTCTTCCCAGCAACG 57.830 50.000 0.00 0.00 0.00 4.10
4607 4721 4.520492 TGATTTCTTTCTCTTCCCAGCAAC 59.480 41.667 0.00 0.00 0.00 4.17
4608 4722 4.728772 TGATTTCTTTCTCTTCCCAGCAA 58.271 39.130 0.00 0.00 0.00 3.91
4609 4723 4.371624 TGATTTCTTTCTCTTCCCAGCA 57.628 40.909 0.00 0.00 0.00 4.41
4610 4724 4.946157 TCATGATTTCTTTCTCTTCCCAGC 59.054 41.667 0.00 0.00 0.00 4.85
4611 4725 6.179040 AGTCATGATTTCTTTCTCTTCCCAG 58.821 40.000 0.00 0.00 0.00 4.45
4612 4726 6.131972 AGTCATGATTTCTTTCTCTTCCCA 57.868 37.500 0.00 0.00 0.00 4.37
4613 4727 7.106239 TGTAGTCATGATTTCTTTCTCTTCCC 58.894 38.462 0.00 0.00 0.00 3.97
4614 4728 7.201600 GCTGTAGTCATGATTTCTTTCTCTTCC 60.202 40.741 0.00 0.00 0.00 3.46
4615 4729 7.548780 AGCTGTAGTCATGATTTCTTTCTCTTC 59.451 37.037 0.00 0.00 0.00 2.87
4616 4730 7.333921 CAGCTGTAGTCATGATTTCTTTCTCTT 59.666 37.037 5.25 0.00 0.00 2.85
4617 4731 6.817641 CAGCTGTAGTCATGATTTCTTTCTCT 59.182 38.462 5.25 0.00 0.00 3.10
4618 4732 6.815641 TCAGCTGTAGTCATGATTTCTTTCTC 59.184 38.462 14.67 0.00 0.00 2.87
4619 4733 6.705302 TCAGCTGTAGTCATGATTTCTTTCT 58.295 36.000 14.67 0.00 0.00 2.52
4620 4734 6.593382 ACTCAGCTGTAGTCATGATTTCTTTC 59.407 38.462 14.67 0.00 0.00 2.62
4621 4735 6.471146 ACTCAGCTGTAGTCATGATTTCTTT 58.529 36.000 14.67 0.00 0.00 2.52
4622 4736 6.047511 ACTCAGCTGTAGTCATGATTTCTT 57.952 37.500 14.67 0.00 0.00 2.52
4623 4737 5.674052 ACTCAGCTGTAGTCATGATTTCT 57.326 39.130 14.67 0.00 0.00 2.52
4624 4738 6.734104 AAACTCAGCTGTAGTCATGATTTC 57.266 37.500 14.67 0.00 0.00 2.17
4625 4739 7.547370 GTCTAAACTCAGCTGTAGTCATGATTT 59.453 37.037 14.67 8.32 0.00 2.17
4626 4740 7.038659 GTCTAAACTCAGCTGTAGTCATGATT 58.961 38.462 14.67 8.93 0.00 2.57
4627 4741 6.568869 GTCTAAACTCAGCTGTAGTCATGAT 58.431 40.000 14.67 0.00 0.00 2.45
4628 4742 5.392057 CGTCTAAACTCAGCTGTAGTCATGA 60.392 44.000 14.67 10.86 0.00 3.07
4629 4743 4.795795 CGTCTAAACTCAGCTGTAGTCATG 59.204 45.833 14.67 9.05 0.00 3.07
4630 4744 4.700692 TCGTCTAAACTCAGCTGTAGTCAT 59.299 41.667 14.67 10.60 0.00 3.06
4631 4745 4.070009 TCGTCTAAACTCAGCTGTAGTCA 58.930 43.478 14.67 6.93 0.00 3.41
4632 4746 4.405196 GTCGTCTAAACTCAGCTGTAGTC 58.595 47.826 14.67 5.08 0.00 2.59
4633 4747 3.120269 CGTCGTCTAAACTCAGCTGTAGT 60.120 47.826 14.67 12.81 0.00 2.73
4634 4748 3.418094 CGTCGTCTAAACTCAGCTGTAG 58.582 50.000 14.67 12.16 0.00 2.74
4635 4749 2.413765 GCGTCGTCTAAACTCAGCTGTA 60.414 50.000 14.67 0.00 0.00 2.74
4636 4750 1.666311 GCGTCGTCTAAACTCAGCTGT 60.666 52.381 14.67 0.00 0.00 4.40
4637 4751 0.985549 GCGTCGTCTAAACTCAGCTG 59.014 55.000 7.63 7.63 0.00 4.24
4638 4752 0.109226 GGCGTCGTCTAAACTCAGCT 60.109 55.000 0.00 0.00 0.00 4.24
4639 4753 0.109226 AGGCGTCGTCTAAACTCAGC 60.109 55.000 0.00 0.00 0.00 4.26
4640 4754 2.251893 GAAGGCGTCGTCTAAACTCAG 58.748 52.381 0.00 0.00 0.00 3.35
4641 4755 1.610038 TGAAGGCGTCGTCTAAACTCA 59.390 47.619 0.00 0.00 0.00 3.41
4642 4756 1.984297 GTGAAGGCGTCGTCTAAACTC 59.016 52.381 0.00 0.00 0.00 3.01
4643 4757 1.338973 TGTGAAGGCGTCGTCTAAACT 59.661 47.619 0.00 0.00 0.00 2.66
4644 4758 1.774639 TGTGAAGGCGTCGTCTAAAC 58.225 50.000 0.00 2.11 0.00 2.01
4645 4759 2.734606 CAATGTGAAGGCGTCGTCTAAA 59.265 45.455 0.00 0.00 0.00 1.85
4646 4760 2.288579 ACAATGTGAAGGCGTCGTCTAA 60.289 45.455 0.00 0.00 0.00 2.10
4647 4761 1.271379 ACAATGTGAAGGCGTCGTCTA 59.729 47.619 0.00 0.00 0.00 2.59
4648 4762 0.033504 ACAATGTGAAGGCGTCGTCT 59.966 50.000 4.26 0.00 0.00 4.18
4649 4763 0.438830 GACAATGTGAAGGCGTCGTC 59.561 55.000 0.00 0.00 0.00 4.20
4650 4764 0.949105 GGACAATGTGAAGGCGTCGT 60.949 55.000 0.00 0.00 0.00 4.34
4651 4765 0.948623 TGGACAATGTGAAGGCGTCG 60.949 55.000 0.00 0.00 0.00 5.12
4652 4766 0.798776 CTGGACAATGTGAAGGCGTC 59.201 55.000 0.00 0.00 0.00 5.19
4653 4767 0.606401 CCTGGACAATGTGAAGGCGT 60.606 55.000 0.00 0.00 0.00 5.68
4654 4768 1.926511 GCCTGGACAATGTGAAGGCG 61.927 60.000 17.00 0.00 43.64 5.52
4655 4769 1.885871 GCCTGGACAATGTGAAGGC 59.114 57.895 17.00 17.00 46.04 4.35
4656 4770 0.606401 ACGCCTGGACAATGTGAAGG 60.606 55.000 0.00 6.59 0.00 3.46
4657 4771 0.518636 CACGCCTGGACAATGTGAAG 59.481 55.000 0.00 0.00 32.39 3.02
4658 4772 0.888736 CCACGCCTGGACAATGTGAA 60.889 55.000 0.00 0.00 40.55 3.18
4659 4773 1.302431 CCACGCCTGGACAATGTGA 60.302 57.895 0.00 0.00 40.55 3.58
4660 4774 1.302431 TCCACGCCTGGACAATGTG 60.302 57.895 0.00 0.00 42.15 3.21
4661 4775 3.156714 TCCACGCCTGGACAATGT 58.843 55.556 0.00 0.00 42.15 2.71
4667 4781 1.003839 GACAATGTCCACGCCTGGA 60.004 57.895 1.10 0.00 45.11 3.86
4668 4782 2.390599 CGACAATGTCCACGCCTGG 61.391 63.158 7.91 0.00 39.23 4.45
4669 4783 1.354337 CTCGACAATGTCCACGCCTG 61.354 60.000 7.91 0.00 0.00 4.85
4670 4784 1.079819 CTCGACAATGTCCACGCCT 60.080 57.895 7.91 0.00 0.00 5.52
4671 4785 2.100631 CCTCGACAATGTCCACGCC 61.101 63.158 7.91 0.00 0.00 5.68
4672 4786 1.352156 GACCTCGACAATGTCCACGC 61.352 60.000 7.91 0.00 0.00 5.34
4673 4787 1.071019 CGACCTCGACAATGTCCACG 61.071 60.000 7.91 0.00 43.02 4.94
4674 4788 0.242825 TCGACCTCGACAATGTCCAC 59.757 55.000 7.91 0.00 44.22 4.02
4675 4789 2.648593 TCGACCTCGACAATGTCCA 58.351 52.632 7.91 0.00 44.22 4.02
4685 4799 3.066900 ACACATCCTCTAAATCGACCTCG 59.933 47.826 0.00 0.00 41.45 4.63
4686 4800 4.657436 ACACATCCTCTAAATCGACCTC 57.343 45.455 0.00 0.00 0.00 3.85
4687 4801 8.423906 AATATACACATCCTCTAAATCGACCT 57.576 34.615 0.00 0.00 0.00 3.85
4688 4802 8.926710 CAAATATACACATCCTCTAAATCGACC 58.073 37.037 0.00 0.00 0.00 4.79
4689 4803 8.926710 CCAAATATACACATCCTCTAAATCGAC 58.073 37.037 0.00 0.00 0.00 4.20
4690 4804 8.866093 TCCAAATATACACATCCTCTAAATCGA 58.134 33.333 0.00 0.00 0.00 3.59
4691 4805 8.926710 GTCCAAATATACACATCCTCTAAATCG 58.073 37.037 0.00 0.00 0.00 3.34
4692 4806 8.926710 CGTCCAAATATACACATCCTCTAAATC 58.073 37.037 0.00 0.00 0.00 2.17
4693 4807 8.647796 TCGTCCAAATATACACATCCTCTAAAT 58.352 33.333 0.00 0.00 0.00 1.40
4694 4808 7.924412 GTCGTCCAAATATACACATCCTCTAAA 59.076 37.037 0.00 0.00 0.00 1.85
4695 4809 7.431249 GTCGTCCAAATATACACATCCTCTAA 58.569 38.462 0.00 0.00 0.00 2.10
4696 4810 6.015688 GGTCGTCCAAATATACACATCCTCTA 60.016 42.308 0.00 0.00 0.00 2.43
4697 4811 5.221461 GGTCGTCCAAATATACACATCCTCT 60.221 44.000 0.00 0.00 0.00 3.69
4698 4812 4.989168 GGTCGTCCAAATATACACATCCTC 59.011 45.833 0.00 0.00 0.00 3.71
4699 4813 4.407621 TGGTCGTCCAAATATACACATCCT 59.592 41.667 0.00 0.00 41.25 3.24
4700 4814 4.699637 TGGTCGTCCAAATATACACATCC 58.300 43.478 0.00 0.00 41.25 3.51
4714 4828 3.068307 ACAGCTTGTCTATATGGTCGTCC 59.932 47.826 0.00 0.00 0.00 4.79
4715 4829 4.308899 ACAGCTTGTCTATATGGTCGTC 57.691 45.455 0.00 0.00 0.00 4.20
4716 4830 4.433615 CAACAGCTTGTCTATATGGTCGT 58.566 43.478 0.00 0.00 0.00 4.34
4717 4831 3.804325 CCAACAGCTTGTCTATATGGTCG 59.196 47.826 0.00 0.00 0.00 4.79
4718 4832 4.811557 GTCCAACAGCTTGTCTATATGGTC 59.188 45.833 0.00 0.00 0.00 4.02
4719 4833 4.680708 CGTCCAACAGCTTGTCTATATGGT 60.681 45.833 0.00 0.00 0.00 3.55
4720 4834 3.804325 CGTCCAACAGCTTGTCTATATGG 59.196 47.826 0.00 0.00 0.00 2.74
4721 4835 3.246226 GCGTCCAACAGCTTGTCTATATG 59.754 47.826 0.00 0.00 0.00 1.78
4722 4836 3.458189 GCGTCCAACAGCTTGTCTATAT 58.542 45.455 0.00 0.00 0.00 0.86
4723 4837 2.418197 GGCGTCCAACAGCTTGTCTATA 60.418 50.000 0.00 0.00 0.00 1.31
4724 4838 1.676014 GGCGTCCAACAGCTTGTCTAT 60.676 52.381 0.00 0.00 0.00 1.98
4725 4839 0.320421 GGCGTCCAACAGCTTGTCTA 60.320 55.000 0.00 0.00 0.00 2.59
4726 4840 1.598130 GGCGTCCAACAGCTTGTCT 60.598 57.895 0.00 0.00 0.00 3.41
4727 4841 1.598130 AGGCGTCCAACAGCTTGTC 60.598 57.895 0.00 0.00 0.00 3.18
4728 4842 1.893808 CAGGCGTCCAACAGCTTGT 60.894 57.895 0.00 0.00 36.00 3.16
4729 4843 1.447317 AACAGGCGTCCAACAGCTTG 61.447 55.000 0.00 0.00 44.52 4.01
4730 4844 0.751643 AAACAGGCGTCCAACAGCTT 60.752 50.000 0.00 0.00 0.00 3.74
4731 4845 0.751643 AAAACAGGCGTCCAACAGCT 60.752 50.000 0.00 0.00 0.00 4.24
4732 4846 0.594796 CAAAACAGGCGTCCAACAGC 60.595 55.000 0.00 0.00 0.00 4.40
4733 4847 0.030638 CCAAAACAGGCGTCCAACAG 59.969 55.000 0.00 0.00 0.00 3.16
4734 4848 1.388065 CCCAAAACAGGCGTCCAACA 61.388 55.000 0.00 0.00 0.00 3.33
4735 4849 1.362355 CCCAAAACAGGCGTCCAAC 59.638 57.895 0.00 0.00 0.00 3.77
4736 4850 2.494530 GCCCAAAACAGGCGTCCAA 61.495 57.895 0.00 0.00 41.41 3.53
4737 4851 2.909965 GCCCAAAACAGGCGTCCA 60.910 61.111 0.00 0.00 41.41 4.02
4743 4857 0.523072 CGACATGAGCCCAAAACAGG 59.477 55.000 0.00 0.00 0.00 4.00
4744 4858 1.069022 CACGACATGAGCCCAAAACAG 60.069 52.381 0.00 0.00 0.00 3.16
4745 4859 0.950836 CACGACATGAGCCCAAAACA 59.049 50.000 0.00 0.00 0.00 2.83
4746 4860 0.240945 CCACGACATGAGCCCAAAAC 59.759 55.000 0.00 0.00 0.00 2.43
4747 4861 0.109532 TCCACGACATGAGCCCAAAA 59.890 50.000 0.00 0.00 0.00 2.44
4748 4862 0.109532 TTCCACGACATGAGCCCAAA 59.890 50.000 0.00 0.00 0.00 3.28
4749 4863 0.109532 TTTCCACGACATGAGCCCAA 59.890 50.000 0.00 0.00 0.00 4.12
4750 4864 0.109532 TTTTCCACGACATGAGCCCA 59.890 50.000 0.00 0.00 0.00 5.36
4751 4865 0.521735 GTTTTCCACGACATGAGCCC 59.478 55.000 0.00 0.00 0.00 5.19
4762 4876 5.657474 TGGATGTCTATACTCGTTTTCCAC 58.343 41.667 0.00 0.00 0.00 4.02
4763 4877 5.925506 TGGATGTCTATACTCGTTTTCCA 57.074 39.130 0.00 0.00 0.00 3.53
4764 4878 9.790389 CTATATGGATGTCTATACTCGTTTTCC 57.210 37.037 0.00 0.00 0.00 3.13
4767 4881 9.516546 TGTCTATATGGATGTCTATACTCGTTT 57.483 33.333 0.00 0.00 0.00 3.60
4768 4882 9.516546 TTGTCTATATGGATGTCTATACTCGTT 57.483 33.333 0.00 0.00 0.00 3.85
4769 4883 9.168451 CTTGTCTATATGGATGTCTATACTCGT 57.832 37.037 0.00 0.00 0.00 4.18
4770 4884 8.126074 GCTTGTCTATATGGATGTCTATACTCG 58.874 40.741 0.00 0.00 0.00 4.18
4771 4885 9.184523 AGCTTGTCTATATGGATGTCTATACTC 57.815 37.037 0.00 0.00 0.00 2.59
4776 4890 8.753133 CCAATAGCTTGTCTATATGGATGTCTA 58.247 37.037 0.00 0.00 37.71 2.59
4777 4891 7.455953 TCCAATAGCTTGTCTATATGGATGTCT 59.544 37.037 0.00 0.00 38.52 3.41
4778 4892 7.615403 TCCAATAGCTTGTCTATATGGATGTC 58.385 38.462 0.00 0.00 38.52 3.06
4779 4893 7.455953 TCTCCAATAGCTTGTCTATATGGATGT 59.544 37.037 0.00 0.00 40.28 3.06
4780 4894 7.845037 TCTCCAATAGCTTGTCTATATGGATG 58.155 38.462 0.00 8.98 40.28 3.51
4781 4895 8.484575 CATCTCCAATAGCTTGTCTATATGGAT 58.515 37.037 0.00 0.00 40.28 3.41
4782 4896 7.580302 GCATCTCCAATAGCTTGTCTATATGGA 60.580 40.741 0.00 11.56 39.65 3.41
4783 4897 6.538021 GCATCTCCAATAGCTTGTCTATATGG 59.462 42.308 0.00 0.00 37.01 2.74
4784 4898 7.329499 AGCATCTCCAATAGCTTGTCTATATG 58.671 38.462 0.00 0.00 37.01 1.78
4785 4899 7.493499 AGCATCTCCAATAGCTTGTCTATAT 57.507 36.000 0.00 0.00 37.01 0.86
4786 4900 6.924913 AGCATCTCCAATAGCTTGTCTATA 57.075 37.500 0.00 0.00 37.01 1.31
4787 4901 5.792741 GAGCATCTCCAATAGCTTGTCTAT 58.207 41.667 0.00 0.00 39.62 1.98
4788 4902 5.207110 GAGCATCTCCAATAGCTTGTCTA 57.793 43.478 0.00 0.00 37.48 2.59
4789 4903 4.070630 GAGCATCTCCAATAGCTTGTCT 57.929 45.455 0.00 0.00 37.48 3.41
4804 4918 4.400567 AGAAACAAGCCCAATAAGAGCATC 59.599 41.667 0.00 0.00 0.00 3.91
4805 4919 4.347607 AGAAACAAGCCCAATAAGAGCAT 58.652 39.130 0.00 0.00 0.00 3.79
4806 4920 3.758554 GAGAAACAAGCCCAATAAGAGCA 59.241 43.478 0.00 0.00 0.00 4.26
4807 4921 3.758554 TGAGAAACAAGCCCAATAAGAGC 59.241 43.478 0.00 0.00 0.00 4.09
4808 4922 5.964958 TTGAGAAACAAGCCCAATAAGAG 57.035 39.130 0.00 0.00 34.20 2.85
5253 6410 1.704628 TCTGGAGAAACATCCCAGCAA 59.295 47.619 0.00 0.00 45.29 3.91
5315 6715 6.813152 GTGGCATTAGCAGAAACAACATAAAT 59.187 34.615 0.00 0.00 44.61 1.40
5478 6882 7.545362 ACAATGACATCTGAGCATAAGTTAC 57.455 36.000 0.00 0.00 0.00 2.50
5487 6891 5.008415 CCAAGGAATACAATGACATCTGAGC 59.992 44.000 0.00 0.00 0.00 4.26
5803 7518 8.361139 AGACTTATCTATACATGTGCAGTTACC 58.639 37.037 9.11 0.00 31.46 2.85
6026 7749 5.921408 ACACTCTCTCAGTCGTGAATTAAAC 59.079 40.000 0.00 0.00 30.26 2.01
6041 7764 3.515901 AGGTTACATTCCCACACTCTCTC 59.484 47.826 0.00 0.00 0.00 3.20
6042 7765 3.521727 AGGTTACATTCCCACACTCTCT 58.478 45.455 0.00 0.00 0.00 3.10
6510 8235 0.321564 CAGGATTCAGACGGCAACCA 60.322 55.000 0.00 0.00 0.00 3.67
6617 8342 3.629058 TGTCAAGACTTCTCGAGAAACG 58.371 45.455 26.87 18.92 44.09 3.60
6703 8429 8.696410 TCAGTTTTTGGATAAGTTCAAAACAC 57.304 30.769 8.16 0.00 40.95 3.32
6719 8445 5.424121 AGTCTCCGACAATTCAGTTTTTG 57.576 39.130 0.00 0.00 34.60 2.44
6773 8827 9.561069 AGAATTAACTCTGCTTTTTCTGTCTTA 57.439 29.630 0.00 0.00 0.00 2.10
6774 8828 8.457238 AGAATTAACTCTGCTTTTTCTGTCTT 57.543 30.769 0.00 0.00 0.00 3.01
6819 8873 1.196127 GACAAAAAGTACCCGCGAAGG 59.804 52.381 8.23 3.02 40.63 3.46
6825 8879 2.359531 TGCAAAGGACAAAAAGTACCCG 59.640 45.455 0.00 0.00 0.00 5.28
6832 8886 1.134551 GCACCCTGCAAAGGACAAAAA 60.135 47.619 9.39 0.00 44.26 1.94
6902 8966 0.857935 GCTGCTGCTGCTAATAGTCG 59.142 55.000 22.10 0.00 40.48 4.18
6927 8991 2.504175 TCCTTGTTCCTAGCCCATACAC 59.496 50.000 0.00 0.00 0.00 2.90
6930 8994 3.414759 TCTCCTTGTTCCTAGCCCATA 57.585 47.619 0.00 0.00 0.00 2.74
6952 9016 4.640364 ACAAAAATTTGGCGACATTCCAT 58.360 34.783 10.38 0.00 42.34 3.41
6981 9045 1.004560 CTGCTCTGGCCAAGTCGAA 60.005 57.895 7.01 0.00 37.74 3.71
7023 9087 2.517450 GGAAAGAGCCGTCGCGATG 61.517 63.158 21.42 21.42 41.18 3.84
7049 9113 3.250762 GCAGTCAGTTTCTGTGTTGCATA 59.749 43.478 0.00 0.00 35.30 3.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.