Multiple sequence alignment - TraesCS3B01G242500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G242500 chr3B 100.000 4182 0 0 996 5177 382323090 382318909 0.000000e+00 7723.0
1 TraesCS3B01G242500 chr3B 100.000 757 0 0 1 757 382324085 382323329 0.000000e+00 1399.0
2 TraesCS3B01G242500 chr3D 98.712 4193 36 4 996 5177 290020143 290015958 0.000000e+00 7428.0
3 TraesCS3B01G242500 chr3D 89.216 714 58 2 1 714 290020855 290020161 0.000000e+00 874.0
4 TraesCS3B01G242500 chr3A 97.492 4186 91 4 999 5177 381297852 381293674 0.000000e+00 7136.0
5 TraesCS3B01G242500 chr4A 85.591 347 45 5 157 500 628934958 628935302 4.930000e-95 359.0
6 TraesCS3B01G242500 chr5A 78.195 399 53 22 150 539 552641446 552641819 1.880000e-54 224.0
7 TraesCS3B01G242500 chr2A 77.719 377 77 6 166 539 502269929 502269557 1.880000e-54 224.0
8 TraesCS3B01G242500 chr4B 76.709 395 73 15 153 540 291803258 291803640 8.790000e-48 202.0
9 TraesCS3B01G242500 chr7D 82.955 176 19 6 165 339 220250551 220250386 1.160000e-31 148.0
10 TraesCS3B01G242500 chr4D 96.512 86 3 0 629 714 464350212 464350297 5.400000e-30 143.0
11 TraesCS3B01G242500 chr5B 90.909 77 6 1 153 228 531631764 531631840 9.170000e-18 102.0
12 TraesCS3B01G242500 chr1A 97.143 35 1 0 409 443 332483520 332483486 5.600000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G242500 chr3B 382318909 382324085 5176 True 4561 7723 100.000 1 5177 2 chr3B.!!$R1 5176
1 TraesCS3B01G242500 chr3D 290015958 290020855 4897 True 4151 7428 93.964 1 5177 2 chr3D.!!$R1 5176
2 TraesCS3B01G242500 chr3A 381293674 381297852 4178 True 7136 7136 97.492 999 5177 1 chr3A.!!$R1 4178

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
531 532 0.027194 CCTGAAATGAGTCGCGCATG 59.973 55.000 8.75 0.0 0.00 4.06 F
582 583 0.034896 AGGCGTGTTGGATCGACTTT 59.965 50.000 0.00 0.0 43.17 2.66 F
677 678 0.108329 CCGGCGGTTCTACAATCAGT 60.108 55.000 19.97 0.0 0.00 3.41 F
2472 2479 1.202855 AGTGGCTTGAGTTCATGTGCT 60.203 47.619 0.00 0.0 0.00 4.40 F
3114 3121 2.004583 CGTTAGAGCGTGGAATGGAA 57.995 50.000 0.00 0.0 0.00 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1420 1427 1.153349 GGAAGGCCTCATCGGTGAC 60.153 63.158 5.23 0.00 34.25 3.67 R
2540 2547 2.035066 AGTGCATTTGAAACAGAGGTGC 59.965 45.455 0.00 0.00 0.00 5.01 R
3114 3121 5.421693 TGACCTAATACCAAAAGCATGCATT 59.578 36.000 21.98 12.12 0.00 3.56 R
3318 3325 2.030893 TCCACTTTGCTGCATTTCTTCG 60.031 45.455 1.84 0.00 0.00 3.79 R
5074 5089 0.454196 GTTTGGCGGTGTTGTTCTGT 59.546 50.000 0.00 0.00 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 3.618019 GCCGAGTCCATTTGTACCTTGTA 60.618 47.826 0.00 0.00 0.00 2.41
105 106 1.175983 TCGAAAACCTTGCGGGCATT 61.176 50.000 0.00 0.00 39.10 3.56
120 121 1.098050 GCATTGTGGAAGAAGCCGAT 58.902 50.000 0.00 0.00 0.00 4.18
134 135 2.017559 GCCGATCGGTGTAGAGCCTT 62.018 60.000 33.33 0.00 37.65 4.35
155 156 1.216710 GCCTCTCCGAGAACAGGTG 59.783 63.158 0.00 0.00 0.00 4.00
160 161 2.432628 CCGAGAACAGGTGGCGTC 60.433 66.667 0.00 0.00 0.00 5.19
179 180 2.102553 GACGAGCGAGGTAGCCAC 59.897 66.667 0.00 0.00 38.01 5.01
235 236 3.248171 GCGTCGACGTCAGGATGC 61.248 66.667 35.48 17.61 42.22 3.91
239 240 2.125952 CGACGTCAGGATGCTGCA 60.126 61.111 17.16 4.13 34.76 4.41
243 244 0.952497 ACGTCAGGATGCTGCAACAG 60.952 55.000 9.76 0.55 34.76 3.16
256 257 0.031994 GCAACAGTGGCGAAAATGGT 59.968 50.000 0.00 0.00 0.00 3.55
284 285 3.476419 CCGGAGTATGGGGCCGTT 61.476 66.667 0.00 0.00 43.35 4.44
317 318 3.039011 GCTTCTAGGGGAGGTATGTGAA 58.961 50.000 0.00 0.00 0.00 3.18
323 324 0.535102 GGGAGGTATGTGAATGCGGG 60.535 60.000 0.00 0.00 0.00 6.13
327 328 1.641677 GTATGTGAATGCGGGCGTC 59.358 57.895 0.00 0.00 0.00 5.19
328 329 1.522806 TATGTGAATGCGGGCGTCC 60.523 57.895 0.00 0.00 0.00 4.79
385 386 1.812922 GAGGCGACCAGATGTGCTG 60.813 63.158 0.00 0.00 44.49 4.41
511 512 3.125698 GCAAACGCGCCTAAATTTAGA 57.874 42.857 23.95 0.00 32.47 2.10
513 514 3.422655 CAAACGCGCCTAAATTTAGACC 58.577 45.455 23.95 14.06 32.47 3.85
525 526 7.466050 GCCTAAATTTAGACCTGAAATGAGTCG 60.466 40.741 23.95 5.04 35.65 4.18
531 532 0.027194 CCTGAAATGAGTCGCGCATG 59.973 55.000 8.75 0.00 0.00 4.06
540 541 0.238289 AGTCGCGCATGGACAAAAAG 59.762 50.000 8.75 0.00 36.87 2.27
547 548 3.305094 GCGCATGGACAAAAAGATGAATG 59.695 43.478 0.30 0.00 0.00 2.67
548 549 4.487948 CGCATGGACAAAAAGATGAATGT 58.512 39.130 0.00 0.00 0.00 2.71
549 550 4.925054 CGCATGGACAAAAAGATGAATGTT 59.075 37.500 0.00 0.00 0.00 2.71
550 551 5.164031 CGCATGGACAAAAAGATGAATGTTG 60.164 40.000 0.00 0.00 0.00 3.33
551 552 5.927689 GCATGGACAAAAAGATGAATGTTGA 59.072 36.000 0.00 0.00 0.00 3.18
552 553 6.592607 GCATGGACAAAAAGATGAATGTTGAT 59.407 34.615 0.00 0.00 0.00 2.57
561 562 9.439500 AAAAAGATGAATGTTGATACAATTGGG 57.561 29.630 10.83 0.00 37.91 4.12
563 564 8.821686 AAGATGAATGTTGATACAATTGGGTA 57.178 30.769 10.83 0.00 37.91 3.69
567 568 3.275143 TGTTGATACAATTGGGTAGGCG 58.725 45.455 10.83 0.00 0.00 5.52
573 574 0.525761 CAATTGGGTAGGCGTGTTGG 59.474 55.000 0.00 0.00 0.00 3.77
580 581 3.377656 AGGCGTGTTGGATCGACT 58.622 55.556 0.00 0.00 40.79 4.18
581 582 0.892755 TAGGCGTGTTGGATCGACTT 59.107 50.000 0.00 0.00 43.17 3.01
582 583 0.034896 AGGCGTGTTGGATCGACTTT 59.965 50.000 0.00 0.00 43.17 2.66
583 584 0.872388 GGCGTGTTGGATCGACTTTT 59.128 50.000 0.00 0.00 31.86 2.27
584 585 2.070783 GGCGTGTTGGATCGACTTTTA 58.929 47.619 0.00 0.00 31.86 1.52
585 586 2.676342 GGCGTGTTGGATCGACTTTTAT 59.324 45.455 0.00 0.00 31.86 1.40
586 587 3.485216 GGCGTGTTGGATCGACTTTTATG 60.485 47.826 0.00 0.00 31.86 1.90
587 588 3.124636 GCGTGTTGGATCGACTTTTATGT 59.875 43.478 0.00 0.00 0.00 2.29
588 589 4.724036 GCGTGTTGGATCGACTTTTATGTC 60.724 45.833 0.00 0.00 0.00 3.06
589 590 4.625742 CGTGTTGGATCGACTTTTATGTCT 59.374 41.667 0.00 0.00 35.00 3.41
590 591 5.444613 CGTGTTGGATCGACTTTTATGTCTG 60.445 44.000 0.00 0.00 35.00 3.51
591 592 5.408604 GTGTTGGATCGACTTTTATGTCTGT 59.591 40.000 0.00 0.00 35.00 3.41
592 593 5.995282 TGTTGGATCGACTTTTATGTCTGTT 59.005 36.000 0.00 0.00 35.00 3.16
630 631 2.235402 ACCCAAACGAATATCGGACAGT 59.765 45.455 4.66 0.00 45.59 3.55
643 644 1.517242 GGACAGTTGGAGTTGCTCTG 58.483 55.000 0.00 0.00 0.00 3.35
644 645 0.871057 GACAGTTGGAGTTGCTCTGC 59.129 55.000 0.00 0.00 35.00 4.26
677 678 0.108329 CCGGCGGTTCTACAATCAGT 60.108 55.000 19.97 0.00 0.00 3.41
699 700 1.906574 AGAGCGGGAGTCATTTTACCA 59.093 47.619 0.00 0.00 0.00 3.25
701 702 1.906574 AGCGGGAGTCATTTTACCAGA 59.093 47.619 0.00 0.00 0.00 3.86
702 703 2.304761 AGCGGGAGTCATTTTACCAGAA 59.695 45.455 0.00 0.00 0.00 3.02
703 704 2.418976 GCGGGAGTCATTTTACCAGAAC 59.581 50.000 0.00 0.00 0.00 3.01
704 705 2.671396 CGGGAGTCATTTTACCAGAACG 59.329 50.000 0.00 0.00 0.00 3.95
705 706 3.671716 GGGAGTCATTTTACCAGAACGT 58.328 45.455 0.00 0.00 0.00 3.99
706 707 3.435671 GGGAGTCATTTTACCAGAACGTG 59.564 47.826 0.00 0.00 0.00 4.49
707 708 4.312443 GGAGTCATTTTACCAGAACGTGA 58.688 43.478 0.00 0.00 0.00 4.35
708 709 4.753107 GGAGTCATTTTACCAGAACGTGAA 59.247 41.667 0.00 0.00 0.00 3.18
709 710 5.237779 GGAGTCATTTTACCAGAACGTGAAA 59.762 40.000 0.00 0.00 0.00 2.69
710 711 6.072673 GGAGTCATTTTACCAGAACGTGAAAT 60.073 38.462 0.00 0.00 33.58 2.17
711 712 7.272037 AGTCATTTTACCAGAACGTGAAATT 57.728 32.000 0.00 0.00 31.64 1.82
712 713 7.360361 AGTCATTTTACCAGAACGTGAAATTC 58.640 34.615 0.00 0.00 31.64 2.17
713 714 7.228706 AGTCATTTTACCAGAACGTGAAATTCT 59.771 33.333 0.00 0.00 36.85 2.40
714 715 7.534239 GTCATTTTACCAGAACGTGAAATTCTC 59.466 37.037 0.00 0.00 34.08 2.87
715 716 6.928979 TTTTACCAGAACGTGAAATTCTCA 57.071 33.333 0.00 0.00 34.08 3.27
716 717 6.539649 TTTACCAGAACGTGAAATTCTCAG 57.460 37.500 0.00 0.00 34.08 3.35
717 718 3.403038 ACCAGAACGTGAAATTCTCAGG 58.597 45.455 0.00 0.00 44.06 3.86
1310 1317 5.713389 TCCTCTCAAACCATCTCGTTAACTA 59.287 40.000 3.71 0.00 0.00 2.24
1420 1427 2.264794 GGTACGTGCTGTCAGGGG 59.735 66.667 3.01 0.00 32.69 4.79
2234 2241 9.436957 TGTTCTTAGAACTGGACTTATTGATTC 57.563 33.333 23.27 0.00 0.00 2.52
2472 2479 1.202855 AGTGGCTTGAGTTCATGTGCT 60.203 47.619 0.00 0.00 0.00 4.40
2540 2547 3.739401 AAAGTGGGGACTGGATTTAGG 57.261 47.619 0.00 0.00 0.00 2.69
3114 3121 2.004583 CGTTAGAGCGTGGAATGGAA 57.995 50.000 0.00 0.00 0.00 3.53
3227 3234 2.162408 GCTATGCCTCAAAGGTGTTCAC 59.838 50.000 0.00 0.00 37.80 3.18
3307 3314 3.823304 ACATGGTCTTGGAAGAAAAGCTC 59.177 43.478 0.00 0.00 36.68 4.09
3318 3325 6.352516 TGGAAGAAAAGCTCTGGAGATATTC 58.647 40.000 1.35 2.58 33.37 1.75
3412 3419 2.419297 GCTGGATTGGTAGACAGAGGTG 60.419 54.545 0.00 0.00 32.86 4.00
3642 3649 3.181461 GGCTAGAAGCTTCAAGGATGCTA 60.181 47.826 27.57 8.24 41.17 3.49
3839 3846 3.119531 GCTGGAGATAGATCACATCCGAG 60.120 52.174 0.00 0.78 32.47 4.63
4089 4096 7.547019 CACACGGCATTTAGATACATATCTCAT 59.453 37.037 4.66 0.00 41.85 2.90
4272 4280 9.582648 AGGTACATGGTGTTTTTAACTTATCTT 57.417 29.630 0.00 0.00 0.00 2.40
4356 4364 2.427753 CGCCTCCCTATCCCAAGC 59.572 66.667 0.00 0.00 0.00 4.01
4966 4976 6.332630 AGCTGGAAATTGGATTTTACATTCG 58.667 36.000 0.00 0.00 31.47 3.34
5018 5028 8.668510 AAACTCAAGGATATAATAGTGTGCAG 57.331 34.615 0.00 0.00 0.00 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 3.254903 GCAAGGTTTTCGATGGTTTACCT 59.745 43.478 0.00 0.00 37.60 3.08
79 80 3.546002 CGCAAGGTTTTCGATGGTTTA 57.454 42.857 0.00 0.00 0.00 2.01
105 106 1.218047 CCGATCGGCTTCTTCCACA 59.782 57.895 23.37 0.00 0.00 4.17
120 121 2.571757 CGCAAGGCTCTACACCGA 59.428 61.111 0.00 0.00 0.00 4.69
160 161 4.253257 GGCTACCTCGCTCGTCGG 62.253 72.222 0.00 0.00 39.05 4.79
179 180 4.374702 GTCGGCAGCACACAAGCG 62.375 66.667 0.00 0.00 40.15 4.68
213 214 4.337060 CTGACGTCGACGCCACCA 62.337 66.667 35.92 25.18 44.43 4.17
229 230 1.975407 GCCACTGTTGCAGCATCCT 60.975 57.895 2.87 0.00 34.37 3.24
232 233 1.454572 TTTCGCCACTGTTGCAGCAT 61.455 50.000 2.87 0.00 34.37 3.79
235 236 1.411394 CATTTTCGCCACTGTTGCAG 58.589 50.000 4.67 0.00 37.52 4.41
239 240 0.958822 GGACCATTTTCGCCACTGTT 59.041 50.000 0.00 0.00 0.00 3.16
243 244 2.696209 TTGGTGGACCATTTTCGCCAC 61.696 52.381 0.00 0.00 46.97 5.01
256 257 1.546589 ATACTCCGGCGTTTGGTGGA 61.547 55.000 0.59 0.00 0.00 4.02
297 298 4.503991 GCATTCACATACCTCCCCTAGAAG 60.504 50.000 0.00 0.00 0.00 2.85
323 324 4.547367 AATGCCTAGGCCGGACGC 62.547 66.667 30.81 0.69 41.09 5.19
327 328 0.394352 AGTTTCAATGCCTAGGCCGG 60.394 55.000 30.81 19.26 41.09 6.13
328 329 0.734889 CAGTTTCAATGCCTAGGCCG 59.265 55.000 30.81 18.78 41.09 6.13
334 335 1.978617 CCGCCCAGTTTCAATGCCT 60.979 57.895 0.00 0.00 0.00 4.75
358 359 3.823330 GGTCGCCTCATCCGTCGT 61.823 66.667 0.00 0.00 0.00 4.34
363 364 0.531532 CACATCTGGTCGCCTCATCC 60.532 60.000 0.00 0.00 0.00 3.51
365 366 1.153289 GCACATCTGGTCGCCTCAT 60.153 57.895 0.00 0.00 0.00 2.90
368 369 2.267006 CAGCACATCTGGTCGCCT 59.733 61.111 0.00 0.00 39.15 5.52
385 386 1.452108 CTTCCTCCCATCAACGGCC 60.452 63.158 0.00 0.00 0.00 6.13
391 392 2.130193 CATTCCTCCTTCCTCCCATCA 58.870 52.381 0.00 0.00 0.00 3.07
435 436 1.839894 CCCTTGTCATCCCCCTAGC 59.160 63.158 0.00 0.00 0.00 3.42
508 509 1.469251 GCGCGACTCATTTCAGGTCTA 60.469 52.381 12.10 0.00 0.00 2.59
511 512 0.391661 ATGCGCGACTCATTTCAGGT 60.392 50.000 12.10 0.00 0.00 4.00
513 514 0.027194 CCATGCGCGACTCATTTCAG 59.973 55.000 12.10 0.00 0.00 3.02
525 526 2.634982 TCATCTTTTTGTCCATGCGC 57.365 45.000 0.00 0.00 0.00 6.09
531 532 9.643693 ATTGTATCAACATTCATCTTTTTGTCC 57.356 29.630 0.00 0.00 34.97 4.02
540 541 7.651808 CCTACCCAATTGTATCAACATTCATC 58.348 38.462 4.43 0.00 34.97 2.92
547 548 3.064820 CACGCCTACCCAATTGTATCAAC 59.935 47.826 4.43 0.00 0.00 3.18
548 549 3.275143 CACGCCTACCCAATTGTATCAA 58.725 45.455 4.43 0.00 0.00 2.57
549 550 2.237643 ACACGCCTACCCAATTGTATCA 59.762 45.455 4.43 0.00 0.00 2.15
550 551 2.914059 ACACGCCTACCCAATTGTATC 58.086 47.619 4.43 0.00 0.00 2.24
551 552 3.013921 CAACACGCCTACCCAATTGTAT 58.986 45.455 4.43 0.00 0.00 2.29
552 553 2.428491 CAACACGCCTACCCAATTGTA 58.572 47.619 4.43 0.00 0.00 2.41
559 560 1.520787 CGATCCAACACGCCTACCC 60.521 63.158 0.00 0.00 0.00 3.69
561 562 0.172803 AGTCGATCCAACACGCCTAC 59.827 55.000 0.00 0.00 0.00 3.18
563 564 0.034896 AAAGTCGATCCAACACGCCT 59.965 50.000 0.00 0.00 0.00 5.52
567 568 5.408604 ACAGACATAAAAGTCGATCCAACAC 59.591 40.000 0.00 0.00 43.24 3.32
592 593 4.873746 TGGGTTGAAACAGACACAAAAA 57.126 36.364 0.00 0.00 0.00 1.94
607 608 3.004171 TGTCCGATATTCGTTTGGGTTG 58.996 45.455 0.00 0.00 38.40 3.77
610 611 2.901249 ACTGTCCGATATTCGTTTGGG 58.099 47.619 0.00 0.00 38.40 4.12
662 663 3.182967 GCTCTCACTGATTGTAGAACCG 58.817 50.000 0.00 0.00 0.00 4.44
664 665 3.182967 CCGCTCTCACTGATTGTAGAAC 58.817 50.000 0.00 0.00 0.00 3.01
671 672 0.820871 GACTCCCGCTCTCACTGATT 59.179 55.000 0.00 0.00 0.00 2.57
677 678 2.093658 GGTAAAATGACTCCCGCTCTCA 60.094 50.000 0.00 0.00 0.00 3.27
699 700 4.336889 TGACCTGAGAATTTCACGTTCT 57.663 40.909 0.00 0.00 38.57 3.01
701 702 5.828299 TTTTGACCTGAGAATTTCACGTT 57.172 34.783 0.00 0.00 0.00 3.99
702 703 5.828299 TTTTTGACCTGAGAATTTCACGT 57.172 34.783 0.00 0.00 0.00 4.49
729 730 2.359531 TCCGGCAGAATTTCACGTTTTT 59.640 40.909 0.00 0.00 0.00 1.94
730 731 1.950909 TCCGGCAGAATTTCACGTTTT 59.049 42.857 0.00 0.00 0.00 2.43
731 732 1.600023 TCCGGCAGAATTTCACGTTT 58.400 45.000 0.00 0.00 0.00 3.60
1221 1228 2.043248 TCCGGTGTAGCCTCTCCC 60.043 66.667 0.00 0.00 34.25 4.30
1420 1427 1.153349 GGAAGGCCTCATCGGTGAC 60.153 63.158 5.23 0.00 34.25 3.67
2148 2155 4.546829 TGGTACAGAAAACTCCGCTATT 57.453 40.909 0.00 0.00 0.00 1.73
2234 2241 8.491152 CCAGACTATTACTGATAGCAATTTTCG 58.509 37.037 0.00 0.00 41.26 3.46
2284 2291 5.957771 ACTCTACAGGCTTTATCAATGGA 57.042 39.130 0.00 0.00 0.00 3.41
2472 2479 4.816385 CCTGCAGACAAAAGTCTCAAACTA 59.184 41.667 17.39 0.00 37.17 2.24
2540 2547 2.035066 AGTGCATTTGAAACAGAGGTGC 59.965 45.455 0.00 0.00 0.00 5.01
3114 3121 5.421693 TGACCTAATACCAAAAGCATGCATT 59.578 36.000 21.98 12.12 0.00 3.56
3227 3234 8.521176 AGAACTCATTTTTCTGATTCATGGAAG 58.479 33.333 0.00 0.00 31.88 3.46
3307 3314 5.333952 GCTGCATTTCTTCGAATATCTCCAG 60.334 44.000 0.00 3.68 0.00 3.86
3318 3325 2.030893 TCCACTTTGCTGCATTTCTTCG 60.031 45.455 1.84 0.00 0.00 3.79
3412 3419 7.492994 GTCCTCCATCATTTCAAAGTACTCTAC 59.507 40.741 0.00 0.00 0.00 2.59
3642 3649 6.660949 CAGGATTTTGAGGTTCTAGTTCCAAT 59.339 38.462 8.22 1.00 0.00 3.16
3839 3846 7.975616 TCAGCTTTTCATATATTTCTTTGGTGC 59.024 33.333 0.00 0.00 0.00 5.01
4089 4096 2.121291 TGATTTGTCGGCCAATAGCA 57.879 45.000 2.24 0.00 46.50 3.49
4204 4211 3.550678 GTCCGAAGAGGTTAACAATAGCG 59.449 47.826 8.10 5.32 41.99 4.26
4272 4280 8.366401 TGAATAGCAAAAATGACCTCAAATTCA 58.634 29.630 0.00 0.00 0.00 2.57
4356 4364 4.619160 GCAAGGTTAGGGATCTTTTTGCAG 60.619 45.833 0.00 0.00 39.41 4.41
5069 5084 2.550606 TGGCGGTGTTGTTCTGTATTTC 59.449 45.455 0.00 0.00 0.00 2.17
5070 5085 2.577700 TGGCGGTGTTGTTCTGTATTT 58.422 42.857 0.00 0.00 0.00 1.40
5071 5086 2.264005 TGGCGGTGTTGTTCTGTATT 57.736 45.000 0.00 0.00 0.00 1.89
5072 5087 2.264005 TTGGCGGTGTTGTTCTGTAT 57.736 45.000 0.00 0.00 0.00 2.29
5073 5088 1.671845 GTTTGGCGGTGTTGTTCTGTA 59.328 47.619 0.00 0.00 0.00 2.74
5074 5089 0.454196 GTTTGGCGGTGTTGTTCTGT 59.546 50.000 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.