Multiple sequence alignment - TraesCS3B01G242100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G242100 chr3B 100.000 2330 0 0 1 2330 381960449 381958120 0.000000e+00 4303
1 TraesCS3B01G242100 chr3B 99.360 469 3 0 1 469 381968587 381968119 0.000000e+00 850
2 TraesCS3B01G242100 chr5B 96.249 1866 64 2 470 2330 280996057 280994193 0.000000e+00 3053
3 TraesCS3B01G242100 chr6B 84.690 1855 278 6 470 2322 671754567 671756417 0.000000e+00 1847
4 TraesCS3B01G242100 chr6B 81.764 1859 329 8 470 2322 497900365 497902219 0.000000e+00 1546
5 TraesCS3B01G242100 chr6B 96.809 470 14 1 1 469 610836774 610836305 0.000000e+00 784
6 TraesCS3B01G242100 chr6B 73.482 626 151 11 1206 1821 193534234 193534854 3.010000e-54 222
7 TraesCS3B01G242100 chr1D 86.812 1509 197 2 470 1978 463062499 463064005 0.000000e+00 1683
8 TraesCS3B01G242100 chr1D 83.714 350 55 2 1973 2322 463064930 463065277 1.730000e-86 329
9 TraesCS3B01G242100 chr5A 84.120 1738 258 14 469 2196 41448789 41447060 0.000000e+00 1664
10 TraesCS3B01G242100 chr5A 82.227 1868 321 9 469 2330 704956502 704954640 0.000000e+00 1600
11 TraesCS3B01G242100 chr7D 82.757 1850 311 8 481 2326 132202769 132200924 0.000000e+00 1642
12 TraesCS3B01G242100 chr5D 84.732 989 138 8 1334 2315 314874301 314875283 0.000000e+00 977
13 TraesCS3B01G242100 chr3A 80.112 1247 228 13 1092 2328 749244560 749243324 0.000000e+00 911
14 TraesCS3B01G242100 chr6A 97.872 470 9 1 1 469 326428141 326427672 0.000000e+00 811
15 TraesCS3B01G242100 chr6A 97.034 472 11 3 1 469 214651201 214651672 0.000000e+00 791
16 TraesCS3B01G242100 chr6A 96.624 474 13 3 1 471 214658954 214659427 0.000000e+00 784
17 TraesCS3B01G242100 chr1B 97.660 470 9 2 1 469 379924653 379924185 0.000000e+00 806
18 TraesCS3B01G242100 chr1A 97.246 472 10 3 1 469 233944028 233944499 0.000000e+00 797
19 TraesCS3B01G242100 chr1A 97.034 472 11 3 1 469 233951735 233952206 0.000000e+00 791
20 TraesCS3B01G242100 chr2B 96.809 470 14 1 1 469 198007248 198006779 0.000000e+00 784


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G242100 chr3B 381958120 381960449 2329 True 4303 4303 100.000 1 2330 1 chr3B.!!$R1 2329
1 TraesCS3B01G242100 chr5B 280994193 280996057 1864 True 3053 3053 96.249 470 2330 1 chr5B.!!$R1 1860
2 TraesCS3B01G242100 chr6B 671754567 671756417 1850 False 1847 1847 84.690 470 2322 1 chr6B.!!$F3 1852
3 TraesCS3B01G242100 chr6B 497900365 497902219 1854 False 1546 1546 81.764 470 2322 1 chr6B.!!$F2 1852
4 TraesCS3B01G242100 chr6B 193534234 193534854 620 False 222 222 73.482 1206 1821 1 chr6B.!!$F1 615
5 TraesCS3B01G242100 chr1D 463062499 463065277 2778 False 1006 1683 85.263 470 2322 2 chr1D.!!$F1 1852
6 TraesCS3B01G242100 chr5A 41447060 41448789 1729 True 1664 1664 84.120 469 2196 1 chr5A.!!$R1 1727
7 TraesCS3B01G242100 chr5A 704954640 704956502 1862 True 1600 1600 82.227 469 2330 1 chr5A.!!$R2 1861
8 TraesCS3B01G242100 chr7D 132200924 132202769 1845 True 1642 1642 82.757 481 2326 1 chr7D.!!$R1 1845
9 TraesCS3B01G242100 chr5D 314874301 314875283 982 False 977 977 84.732 1334 2315 1 chr5D.!!$F1 981
10 TraesCS3B01G242100 chr3A 749243324 749244560 1236 True 911 911 80.112 1092 2328 1 chr3A.!!$R1 1236

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
204 205 0.03601 CAGTAGTGGAGCCCAGTTGG 60.036 60.0 6.85 0.0 38.3 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1684 1703 0.343372 AGGAGGAGAGGGCAATGGTA 59.657 55.0 0.0 0.0 0.0 3.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 6.814076 AACTTAAATAGTCTTGATCTCGCG 57.186 37.500 0.00 0.00 35.54 5.87
39 40 5.282510 ACTTAAATAGTCTTGATCTCGCGG 58.717 41.667 6.13 0.00 28.23 6.46
40 41 2.802787 AATAGTCTTGATCTCGCGGG 57.197 50.000 6.13 1.01 0.00 6.13
41 42 1.693627 ATAGTCTTGATCTCGCGGGT 58.306 50.000 5.57 0.00 0.00 5.28
42 43 0.738975 TAGTCTTGATCTCGCGGGTG 59.261 55.000 5.57 0.00 0.00 4.61
43 44 2.167861 GTCTTGATCTCGCGGGTGC 61.168 63.158 5.57 0.00 37.91 5.01
53 54 3.869272 GCGGGTGCGAGATTGCTG 61.869 66.667 0.00 0.00 35.36 4.41
54 55 2.125552 CGGGTGCGAGATTGCTGA 60.126 61.111 0.00 0.00 35.36 4.26
55 56 2.169789 CGGGTGCGAGATTGCTGAG 61.170 63.158 0.00 0.00 35.36 3.35
56 57 1.078848 GGGTGCGAGATTGCTGAGT 60.079 57.895 0.00 0.00 35.36 3.41
57 58 1.086634 GGGTGCGAGATTGCTGAGTC 61.087 60.000 0.00 0.00 35.36 3.36
58 59 1.086634 GGTGCGAGATTGCTGAGTCC 61.087 60.000 0.00 0.00 35.36 3.85
59 60 1.086634 GTGCGAGATTGCTGAGTCCC 61.087 60.000 0.00 0.00 35.36 4.46
60 61 1.522580 GCGAGATTGCTGAGTCCCC 60.523 63.158 0.00 0.00 0.00 4.81
61 62 1.227089 CGAGATTGCTGAGTCCCCG 60.227 63.158 0.00 0.00 0.00 5.73
62 63 1.901085 GAGATTGCTGAGTCCCCGT 59.099 57.895 0.00 0.00 0.00 5.28
63 64 0.460987 GAGATTGCTGAGTCCCCGTG 60.461 60.000 0.00 0.00 0.00 4.94
64 65 1.450312 GATTGCTGAGTCCCCGTGG 60.450 63.158 0.00 0.00 0.00 4.94
65 66 3.628646 ATTGCTGAGTCCCCGTGGC 62.629 63.158 0.00 0.00 0.00 5.01
67 68 4.459089 GCTGAGTCCCCGTGGCTC 62.459 72.222 2.34 2.34 36.15 4.70
68 69 2.997315 CTGAGTCCCCGTGGCTCA 60.997 66.667 9.78 9.78 40.32 4.26
69 70 3.302347 CTGAGTCCCCGTGGCTCAC 62.302 68.421 6.90 0.00 38.81 3.51
70 71 3.311110 GAGTCCCCGTGGCTCACA 61.311 66.667 6.21 0.00 35.86 3.58
71 72 3.302347 GAGTCCCCGTGGCTCACAG 62.302 68.421 6.21 0.00 35.86 3.66
72 73 3.311110 GTCCCCGTGGCTCACAGA 61.311 66.667 6.21 0.00 33.40 3.41
73 74 2.284625 TCCCCGTGGCTCACAGAT 60.285 61.111 6.21 0.00 33.40 2.90
74 75 1.001120 TCCCCGTGGCTCACAGATA 59.999 57.895 6.21 0.00 33.40 1.98
75 76 1.144057 CCCCGTGGCTCACAGATAC 59.856 63.158 6.21 0.00 33.40 2.24
76 77 1.330655 CCCCGTGGCTCACAGATACT 61.331 60.000 6.21 0.00 33.40 2.12
77 78 0.537188 CCCGTGGCTCACAGATACTT 59.463 55.000 6.21 0.00 33.40 2.24
78 79 1.471676 CCCGTGGCTCACAGATACTTC 60.472 57.143 6.21 0.00 33.40 3.01
79 80 1.471676 CCGTGGCTCACAGATACTTCC 60.472 57.143 6.21 0.00 33.40 3.46
80 81 1.204704 CGTGGCTCACAGATACTTCCA 59.795 52.381 6.21 0.00 33.40 3.53
81 82 2.353704 CGTGGCTCACAGATACTTCCAA 60.354 50.000 6.21 0.00 33.40 3.53
82 83 3.674997 GTGGCTCACAGATACTTCCAAA 58.325 45.455 1.01 0.00 34.08 3.28
83 84 4.072131 GTGGCTCACAGATACTTCCAAAA 58.928 43.478 1.01 0.00 34.08 2.44
84 85 4.072131 TGGCTCACAGATACTTCCAAAAC 58.928 43.478 0.00 0.00 0.00 2.43
85 86 3.440522 GGCTCACAGATACTTCCAAAACC 59.559 47.826 0.00 0.00 0.00 3.27
86 87 4.072131 GCTCACAGATACTTCCAAAACCA 58.928 43.478 0.00 0.00 0.00 3.67
87 88 4.154918 GCTCACAGATACTTCCAAAACCAG 59.845 45.833 0.00 0.00 0.00 4.00
88 89 4.072131 TCACAGATACTTCCAAAACCAGC 58.928 43.478 0.00 0.00 0.00 4.85
89 90 4.074970 CACAGATACTTCCAAAACCAGCT 58.925 43.478 0.00 0.00 0.00 4.24
90 91 4.520492 CACAGATACTTCCAAAACCAGCTT 59.480 41.667 0.00 0.00 0.00 3.74
91 92 4.520492 ACAGATACTTCCAAAACCAGCTTG 59.480 41.667 0.00 0.00 0.00 4.01
92 93 3.507622 AGATACTTCCAAAACCAGCTTGC 59.492 43.478 0.00 0.00 0.00 4.01
93 94 1.484038 ACTTCCAAAACCAGCTTGCA 58.516 45.000 0.00 0.00 0.00 4.08
94 95 1.410153 ACTTCCAAAACCAGCTTGCAG 59.590 47.619 0.00 0.00 0.00 4.41
95 96 0.752054 TTCCAAAACCAGCTTGCAGG 59.248 50.000 2.42 2.42 0.00 4.85
96 97 0.396974 TCCAAAACCAGCTTGCAGGT 60.397 50.000 3.79 3.79 40.61 4.00
97 98 0.249573 CCAAAACCAGCTTGCAGGTG 60.250 55.000 10.37 3.16 42.96 4.00
98 99 0.877213 CAAAACCAGCTTGCAGGTGC 60.877 55.000 10.37 0.00 42.05 5.01
99 100 2.031674 AAAACCAGCTTGCAGGTGCC 62.032 55.000 10.37 0.00 42.05 5.01
102 103 3.289834 CAGCTTGCAGGTGCCGTT 61.290 61.111 0.00 0.00 36.88 4.44
103 104 3.289834 AGCTTGCAGGTGCCGTTG 61.290 61.111 0.00 0.00 41.18 4.10
104 105 3.286751 GCTTGCAGGTGCCGTTGA 61.287 61.111 0.00 0.00 41.18 3.18
105 106 2.949106 CTTGCAGGTGCCGTTGAG 59.051 61.111 0.00 0.00 41.18 3.02
106 107 1.893808 CTTGCAGGTGCCGTTGAGT 60.894 57.895 0.00 0.00 41.18 3.41
107 108 1.845809 CTTGCAGGTGCCGTTGAGTC 61.846 60.000 0.00 0.00 41.18 3.36
108 109 3.050275 GCAGGTGCCGTTGAGTCC 61.050 66.667 0.00 0.00 34.31 3.85
109 110 2.738521 CAGGTGCCGTTGAGTCCG 60.739 66.667 0.00 0.00 0.00 4.79
110 111 3.231736 AGGTGCCGTTGAGTCCGT 61.232 61.111 0.00 0.00 0.00 4.69
111 112 1.904865 AGGTGCCGTTGAGTCCGTA 60.905 57.895 0.00 0.00 0.00 4.02
112 113 1.735559 GGTGCCGTTGAGTCCGTAC 60.736 63.158 0.00 0.00 0.00 3.67
113 114 1.007038 GTGCCGTTGAGTCCGTACA 60.007 57.895 0.00 0.00 0.00 2.90
114 115 0.598158 GTGCCGTTGAGTCCGTACAA 60.598 55.000 0.00 0.00 0.00 2.41
115 116 0.319211 TGCCGTTGAGTCCGTACAAG 60.319 55.000 0.00 0.00 0.00 3.16
116 117 0.319297 GCCGTTGAGTCCGTACAAGT 60.319 55.000 0.00 0.00 0.00 3.16
117 118 1.415374 CCGTTGAGTCCGTACAAGTG 58.585 55.000 0.00 0.00 0.00 3.16
118 119 1.001048 CCGTTGAGTCCGTACAAGTGA 60.001 52.381 0.00 0.00 0.00 3.41
119 120 2.049228 CGTTGAGTCCGTACAAGTGAC 58.951 52.381 0.00 0.00 0.00 3.67
120 121 2.049228 GTTGAGTCCGTACAAGTGACG 58.951 52.381 0.00 0.00 40.02 4.35
121 122 0.039798 TGAGTCCGTACAAGTGACGC 60.040 55.000 0.00 0.00 38.99 5.19
122 123 0.039798 GAGTCCGTACAAGTGACGCA 60.040 55.000 0.00 0.00 38.99 5.24
123 124 0.386476 AGTCCGTACAAGTGACGCAA 59.614 50.000 0.00 0.00 38.99 4.85
124 125 0.505655 GTCCGTACAAGTGACGCAAC 59.494 55.000 0.00 0.00 38.99 4.17
125 126 0.598158 TCCGTACAAGTGACGCAACC 60.598 55.000 0.00 0.00 38.99 3.77
126 127 0.876777 CCGTACAAGTGACGCAACCA 60.877 55.000 0.00 0.00 38.99 3.67
127 128 0.931702 CGTACAAGTGACGCAACCAA 59.068 50.000 0.00 0.00 32.89 3.67
128 129 1.070843 CGTACAAGTGACGCAACCAAG 60.071 52.381 0.00 0.00 32.89 3.61
129 130 0.941542 TACAAGTGACGCAACCAAGC 59.058 50.000 0.00 0.00 0.00 4.01
130 131 0.748005 ACAAGTGACGCAACCAAGCT 60.748 50.000 0.00 0.00 0.00 3.74
131 132 0.040958 CAAGTGACGCAACCAAGCTC 60.041 55.000 0.00 0.00 0.00 4.09
132 133 0.463654 AAGTGACGCAACCAAGCTCA 60.464 50.000 0.00 0.00 0.00 4.26
133 134 0.882042 AGTGACGCAACCAAGCTCAG 60.882 55.000 0.00 0.00 0.00 3.35
134 135 1.597854 TGACGCAACCAAGCTCAGG 60.598 57.895 3.72 3.72 0.00 3.86
135 136 1.301716 GACGCAACCAAGCTCAGGA 60.302 57.895 11.80 0.00 0.00 3.86
136 137 1.294659 GACGCAACCAAGCTCAGGAG 61.295 60.000 11.80 5.37 0.00 3.69
137 138 2.037136 CGCAACCAAGCTCAGGAGG 61.037 63.158 11.80 4.74 0.00 4.30
138 139 1.376466 GCAACCAAGCTCAGGAGGA 59.624 57.895 11.80 0.00 0.00 3.71
139 140 0.676151 GCAACCAAGCTCAGGAGGAG 60.676 60.000 11.80 0.00 46.93 3.69
147 148 3.108292 CTCAGGAGGAGCTCGATGA 57.892 57.895 7.83 7.98 36.69 2.92
148 149 1.397672 CTCAGGAGGAGCTCGATGAA 58.602 55.000 7.83 0.00 36.69 2.57
149 150 1.337703 CTCAGGAGGAGCTCGATGAAG 59.662 57.143 7.83 0.00 36.69 3.02
150 151 1.064389 TCAGGAGGAGCTCGATGAAGA 60.064 52.381 7.83 0.00 28.67 2.87
151 152 1.962807 CAGGAGGAGCTCGATGAAGAT 59.037 52.381 7.83 0.00 0.00 2.40
152 153 2.030007 CAGGAGGAGCTCGATGAAGATC 60.030 54.545 7.83 0.00 0.00 2.75
153 154 2.158475 AGGAGGAGCTCGATGAAGATCT 60.158 50.000 7.83 0.00 32.29 2.75
154 155 2.627699 GGAGGAGCTCGATGAAGATCTT 59.372 50.000 7.95 7.95 32.29 2.40
155 156 3.552684 GGAGGAGCTCGATGAAGATCTTG 60.553 52.174 14.00 0.00 32.29 3.02
156 157 3.030291 AGGAGCTCGATGAAGATCTTGT 58.970 45.455 14.00 0.64 32.29 3.16
157 158 3.122297 GGAGCTCGATGAAGATCTTGTG 58.878 50.000 14.00 0.53 32.29 3.33
158 159 2.539274 GAGCTCGATGAAGATCTTGTGC 59.461 50.000 14.00 10.66 0.00 4.57
159 160 2.168106 AGCTCGATGAAGATCTTGTGCT 59.832 45.455 14.00 12.73 0.00 4.40
160 161 2.935201 GCTCGATGAAGATCTTGTGCTT 59.065 45.455 14.00 0.00 0.00 3.91
161 162 3.373439 GCTCGATGAAGATCTTGTGCTTT 59.627 43.478 14.00 0.00 0.00 3.51
162 163 4.727162 GCTCGATGAAGATCTTGTGCTTTG 60.727 45.833 14.00 1.49 0.00 2.77
163 164 4.318332 TCGATGAAGATCTTGTGCTTTGT 58.682 39.130 14.00 0.00 0.00 2.83
164 165 4.152938 TCGATGAAGATCTTGTGCTTTGTG 59.847 41.667 14.00 0.00 0.00 3.33
165 166 4.083643 CGATGAAGATCTTGTGCTTTGTGT 60.084 41.667 14.00 0.00 0.00 3.72
166 167 5.561532 CGATGAAGATCTTGTGCTTTGTGTT 60.562 40.000 14.00 0.00 0.00 3.32
167 168 4.923893 TGAAGATCTTGTGCTTTGTGTTG 58.076 39.130 14.00 0.00 0.00 3.33
168 169 4.398988 TGAAGATCTTGTGCTTTGTGTTGT 59.601 37.500 14.00 0.00 0.00 3.32
169 170 4.989279 AGATCTTGTGCTTTGTGTTGTT 57.011 36.364 0.00 0.00 0.00 2.83
170 171 5.329035 AGATCTTGTGCTTTGTGTTGTTT 57.671 34.783 0.00 0.00 0.00 2.83
171 172 5.343249 AGATCTTGTGCTTTGTGTTGTTTC 58.657 37.500 0.00 0.00 0.00 2.78
172 173 3.843999 TCTTGTGCTTTGTGTTGTTTCC 58.156 40.909 0.00 0.00 0.00 3.13
173 174 2.270275 TGTGCTTTGTGTTGTTTCCG 57.730 45.000 0.00 0.00 0.00 4.30
174 175 1.542030 TGTGCTTTGTGTTGTTTCCGT 59.458 42.857 0.00 0.00 0.00 4.69
175 176 2.029828 TGTGCTTTGTGTTGTTTCCGTT 60.030 40.909 0.00 0.00 0.00 4.44
176 177 2.596862 GTGCTTTGTGTTGTTTCCGTTC 59.403 45.455 0.00 0.00 0.00 3.95
177 178 2.490115 TGCTTTGTGTTGTTTCCGTTCT 59.510 40.909 0.00 0.00 0.00 3.01
178 179 3.690139 TGCTTTGTGTTGTTTCCGTTCTA 59.310 39.130 0.00 0.00 0.00 2.10
179 180 4.201871 TGCTTTGTGTTGTTTCCGTTCTAG 60.202 41.667 0.00 0.00 0.00 2.43
180 181 4.201881 GCTTTGTGTTGTTTCCGTTCTAGT 60.202 41.667 0.00 0.00 0.00 2.57
181 182 5.675323 GCTTTGTGTTGTTTCCGTTCTAGTT 60.675 40.000 0.00 0.00 0.00 2.24
182 183 4.868450 TGTGTTGTTTCCGTTCTAGTTG 57.132 40.909 0.00 0.00 0.00 3.16
183 184 4.505808 TGTGTTGTTTCCGTTCTAGTTGA 58.494 39.130 0.00 0.00 0.00 3.18
184 185 5.120399 TGTGTTGTTTCCGTTCTAGTTGAT 58.880 37.500 0.00 0.00 0.00 2.57
185 186 5.235616 TGTGTTGTTTCCGTTCTAGTTGATC 59.764 40.000 0.00 0.00 0.00 2.92
186 187 5.235616 GTGTTGTTTCCGTTCTAGTTGATCA 59.764 40.000 0.00 0.00 0.00 2.92
187 188 5.465390 TGTTGTTTCCGTTCTAGTTGATCAG 59.535 40.000 0.00 0.00 0.00 2.90
188 189 5.209818 TGTTTCCGTTCTAGTTGATCAGT 57.790 39.130 0.00 0.00 0.00 3.41
189 190 6.335471 TGTTTCCGTTCTAGTTGATCAGTA 57.665 37.500 0.00 0.00 0.00 2.74
190 191 6.387465 TGTTTCCGTTCTAGTTGATCAGTAG 58.613 40.000 0.00 1.74 0.00 2.57
191 192 6.015688 TGTTTCCGTTCTAGTTGATCAGTAGT 60.016 38.462 11.85 0.00 30.99 2.73
192 193 5.562506 TCCGTTCTAGTTGATCAGTAGTG 57.437 43.478 11.85 0.00 30.99 2.74
193 194 4.398358 TCCGTTCTAGTTGATCAGTAGTGG 59.602 45.833 11.85 11.90 30.99 4.00
194 195 4.398358 CCGTTCTAGTTGATCAGTAGTGGA 59.602 45.833 11.85 0.48 30.99 4.02
195 196 5.449314 CCGTTCTAGTTGATCAGTAGTGGAG 60.449 48.000 11.85 5.23 30.99 3.86
196 197 5.344884 GTTCTAGTTGATCAGTAGTGGAGC 58.655 45.833 11.85 1.82 30.99 4.70
197 198 3.954904 TCTAGTTGATCAGTAGTGGAGCC 59.045 47.826 11.85 0.00 30.99 4.70
198 199 1.834263 AGTTGATCAGTAGTGGAGCCC 59.166 52.381 0.00 0.00 0.00 5.19
199 200 1.555075 GTTGATCAGTAGTGGAGCCCA 59.445 52.381 0.00 0.00 0.00 5.36
200 201 1.489481 TGATCAGTAGTGGAGCCCAG 58.511 55.000 0.00 0.00 32.34 4.45
201 202 1.273267 TGATCAGTAGTGGAGCCCAGT 60.273 52.381 6.76 6.76 40.67 4.00
202 203 1.834263 GATCAGTAGTGGAGCCCAGTT 59.166 52.381 6.85 0.00 38.30 3.16
203 204 0.976641 TCAGTAGTGGAGCCCAGTTG 59.023 55.000 6.85 1.82 38.30 3.16
204 205 0.036010 CAGTAGTGGAGCCCAGTTGG 60.036 60.000 6.85 0.00 38.30 3.77
214 215 2.186903 CCAGTTGGGGTCGATCGG 59.813 66.667 16.41 0.00 0.00 4.18
215 216 2.186903 CAGTTGGGGTCGATCGGG 59.813 66.667 16.41 0.00 0.00 5.14
216 217 2.038329 AGTTGGGGTCGATCGGGA 59.962 61.111 16.41 0.00 0.00 5.14
217 218 2.186125 GTTGGGGTCGATCGGGAC 59.814 66.667 16.41 6.85 36.18 4.46
224 225 3.046280 GTCGATCGGGACCTTTGTC 57.954 57.895 16.41 0.00 40.98 3.18
225 226 0.801067 GTCGATCGGGACCTTTGTCG 60.801 60.000 16.41 0.00 42.73 4.35
232 233 3.792716 GGACCTTTGTCGCATTTGG 57.207 52.632 0.00 0.00 42.73 3.28
233 234 0.243636 GGACCTTTGTCGCATTTGGG 59.756 55.000 0.00 0.00 42.73 4.12
234 235 0.243636 GACCTTTGTCGCATTTGGGG 59.756 55.000 0.00 0.00 0.00 4.96
235 236 0.469144 ACCTTTGTCGCATTTGGGGT 60.469 50.000 0.00 0.00 0.00 4.95
236 237 0.678950 CCTTTGTCGCATTTGGGGTT 59.321 50.000 0.00 0.00 0.00 4.11
237 238 1.336795 CCTTTGTCGCATTTGGGGTTC 60.337 52.381 0.00 0.00 0.00 3.62
238 239 1.613437 CTTTGTCGCATTTGGGGTTCT 59.387 47.619 0.00 0.00 0.00 3.01
239 240 1.698506 TTGTCGCATTTGGGGTTCTT 58.301 45.000 0.00 0.00 0.00 2.52
240 241 1.243902 TGTCGCATTTGGGGTTCTTC 58.756 50.000 0.00 0.00 0.00 2.87
241 242 1.202879 TGTCGCATTTGGGGTTCTTCT 60.203 47.619 0.00 0.00 0.00 2.85
242 243 1.886542 GTCGCATTTGGGGTTCTTCTT 59.113 47.619 0.00 0.00 0.00 2.52
243 244 2.296190 GTCGCATTTGGGGTTCTTCTTT 59.704 45.455 0.00 0.00 0.00 2.52
244 245 2.962421 TCGCATTTGGGGTTCTTCTTTT 59.038 40.909 0.00 0.00 0.00 2.27
245 246 4.022676 GTCGCATTTGGGGTTCTTCTTTTA 60.023 41.667 0.00 0.00 0.00 1.52
246 247 4.770010 TCGCATTTGGGGTTCTTCTTTTAT 59.230 37.500 0.00 0.00 0.00 1.40
247 248 5.245075 TCGCATTTGGGGTTCTTCTTTTATT 59.755 36.000 0.00 0.00 0.00 1.40
248 249 5.931724 CGCATTTGGGGTTCTTCTTTTATTT 59.068 36.000 0.00 0.00 0.00 1.40
249 250 7.039644 TCGCATTTGGGGTTCTTCTTTTATTTA 60.040 33.333 0.00 0.00 0.00 1.40
250 251 7.275560 CGCATTTGGGGTTCTTCTTTTATTTAG 59.724 37.037 0.00 0.00 0.00 1.85
251 252 7.549134 GCATTTGGGGTTCTTCTTTTATTTAGG 59.451 37.037 0.00 0.00 0.00 2.69
252 253 6.599356 TTGGGGTTCTTCTTTTATTTAGGC 57.401 37.500 0.00 0.00 0.00 3.93
253 254 5.899278 TGGGGTTCTTCTTTTATTTAGGCT 58.101 37.500 0.00 0.00 0.00 4.58
254 255 5.949952 TGGGGTTCTTCTTTTATTTAGGCTC 59.050 40.000 0.00 0.00 0.00 4.70
255 256 5.360144 GGGGTTCTTCTTTTATTTAGGCTCC 59.640 44.000 0.00 0.00 0.00 4.70
256 257 5.066117 GGGTTCTTCTTTTATTTAGGCTCCG 59.934 44.000 0.00 0.00 0.00 4.63
257 258 5.646793 GGTTCTTCTTTTATTTAGGCTCCGT 59.353 40.000 0.00 0.00 0.00 4.69
258 259 6.820152 GGTTCTTCTTTTATTTAGGCTCCGTA 59.180 38.462 0.00 0.00 0.00 4.02
259 260 7.011202 GGTTCTTCTTTTATTTAGGCTCCGTAG 59.989 40.741 0.00 0.00 0.00 3.51
260 261 7.179076 TCTTCTTTTATTTAGGCTCCGTAGT 57.821 36.000 0.00 0.00 0.00 2.73
261 262 7.263496 TCTTCTTTTATTTAGGCTCCGTAGTC 58.737 38.462 0.00 0.00 0.00 2.59
262 263 5.585390 TCTTTTATTTAGGCTCCGTAGTCG 58.415 41.667 0.00 0.00 30.45 4.18
272 273 3.217231 CGTAGTCGGGCCCTGATT 58.783 61.111 22.43 17.41 0.00 2.57
273 274 1.227263 CGTAGTCGGGCCCTGATTG 60.227 63.158 22.43 3.20 0.00 2.67
274 275 1.905512 GTAGTCGGGCCCTGATTGT 59.094 57.895 22.43 10.14 0.00 2.71
275 276 1.117150 GTAGTCGGGCCCTGATTGTA 58.883 55.000 22.43 9.23 0.00 2.41
276 277 1.692519 GTAGTCGGGCCCTGATTGTAT 59.307 52.381 22.43 6.81 0.00 2.29
277 278 1.213296 AGTCGGGCCCTGATTGTATT 58.787 50.000 22.43 0.04 0.00 1.89
278 279 1.564348 AGTCGGGCCCTGATTGTATTT 59.436 47.619 22.43 0.00 0.00 1.40
279 280 1.676006 GTCGGGCCCTGATTGTATTTG 59.324 52.381 22.43 0.00 0.00 2.32
280 281 1.032014 CGGGCCCTGATTGTATTTGG 58.968 55.000 22.43 0.00 0.00 3.28
281 282 1.684869 CGGGCCCTGATTGTATTTGGT 60.685 52.381 22.43 0.00 0.00 3.67
282 283 2.466846 GGGCCCTGATTGTATTTGGTT 58.533 47.619 17.04 0.00 0.00 3.67
283 284 2.168313 GGGCCCTGATTGTATTTGGTTG 59.832 50.000 17.04 0.00 0.00 3.77
284 285 2.831526 GGCCCTGATTGTATTTGGTTGT 59.168 45.455 0.00 0.00 0.00 3.32
285 286 3.260632 GGCCCTGATTGTATTTGGTTGTT 59.739 43.478 0.00 0.00 0.00 2.83
286 287 4.244862 GCCCTGATTGTATTTGGTTGTTG 58.755 43.478 0.00 0.00 0.00 3.33
287 288 4.262420 GCCCTGATTGTATTTGGTTGTTGT 60.262 41.667 0.00 0.00 0.00 3.32
288 289 5.047660 GCCCTGATTGTATTTGGTTGTTGTA 60.048 40.000 0.00 0.00 0.00 2.41
289 290 6.517529 GCCCTGATTGTATTTGGTTGTTGTAA 60.518 38.462 0.00 0.00 0.00 2.41
290 291 7.610865 CCCTGATTGTATTTGGTTGTTGTAAT 58.389 34.615 0.00 0.00 0.00 1.89
291 292 7.545265 CCCTGATTGTATTTGGTTGTTGTAATG 59.455 37.037 0.00 0.00 0.00 1.90
292 293 7.063308 CCTGATTGTATTTGGTTGTTGTAATGC 59.937 37.037 0.00 0.00 0.00 3.56
293 294 7.665690 TGATTGTATTTGGTTGTTGTAATGCT 58.334 30.769 0.00 0.00 0.00 3.79
294 295 8.147058 TGATTGTATTTGGTTGTTGTAATGCTT 58.853 29.630 0.00 0.00 0.00 3.91
295 296 8.900983 ATTGTATTTGGTTGTTGTAATGCTTT 57.099 26.923 0.00 0.00 0.00 3.51
296 297 9.988815 ATTGTATTTGGTTGTTGTAATGCTTTA 57.011 25.926 0.00 0.00 0.00 1.85
297 298 9.988815 TTGTATTTGGTTGTTGTAATGCTTTAT 57.011 25.926 0.00 0.00 0.00 1.40
298 299 9.988815 TGTATTTGGTTGTTGTAATGCTTTATT 57.011 25.926 0.00 0.00 0.00 1.40
301 302 9.723601 ATTTGGTTGTTGTAATGCTTTATTCAT 57.276 25.926 0.00 0.00 0.00 2.57
302 303 8.531622 TTGGTTGTTGTAATGCTTTATTCATG 57.468 30.769 0.00 0.00 0.00 3.07
303 304 7.665690 TGGTTGTTGTAATGCTTTATTCATGT 58.334 30.769 0.00 0.00 0.00 3.21
304 305 8.797438 TGGTTGTTGTAATGCTTTATTCATGTA 58.203 29.630 0.00 0.00 0.00 2.29
305 306 9.801873 GGTTGTTGTAATGCTTTATTCATGTAT 57.198 29.630 0.00 0.00 0.00 2.29
314 315 9.926158 AATGCTTTATTCATGTATTTGTGTGAA 57.074 25.926 0.00 0.00 35.33 3.18
315 316 8.969121 TGCTTTATTCATGTATTTGTGTGAAG 57.031 30.769 0.00 0.00 34.45 3.02
316 317 8.575589 TGCTTTATTCATGTATTTGTGTGAAGT 58.424 29.630 0.00 0.00 34.45 3.01
317 318 8.853345 GCTTTATTCATGTATTTGTGTGAAGTG 58.147 33.333 0.00 0.00 34.45 3.16
318 319 9.345517 CTTTATTCATGTATTTGTGTGAAGTGG 57.654 33.333 0.00 0.00 34.45 4.00
319 320 4.764679 TCATGTATTTGTGTGAAGTGGC 57.235 40.909 0.00 0.00 0.00 5.01
320 321 3.188254 TCATGTATTTGTGTGAAGTGGCG 59.812 43.478 0.00 0.00 0.00 5.69
321 322 2.839975 TGTATTTGTGTGAAGTGGCGA 58.160 42.857 0.00 0.00 0.00 5.54
322 323 3.407698 TGTATTTGTGTGAAGTGGCGAT 58.592 40.909 0.00 0.00 0.00 4.58
323 324 3.818210 TGTATTTGTGTGAAGTGGCGATT 59.182 39.130 0.00 0.00 0.00 3.34
324 325 2.772568 TTTGTGTGAAGTGGCGATTG 57.227 45.000 0.00 0.00 0.00 2.67
325 326 1.674359 TTGTGTGAAGTGGCGATTGT 58.326 45.000 0.00 0.00 0.00 2.71
326 327 2.535012 TGTGTGAAGTGGCGATTGTA 57.465 45.000 0.00 0.00 0.00 2.41
327 328 2.839975 TGTGTGAAGTGGCGATTGTAA 58.160 42.857 0.00 0.00 0.00 2.41
328 329 2.805671 TGTGTGAAGTGGCGATTGTAAG 59.194 45.455 0.00 0.00 0.00 2.34
329 330 1.804151 TGTGAAGTGGCGATTGTAAGC 59.196 47.619 0.00 0.00 0.00 3.09
340 341 5.924475 GCGATTGTAAGCCAACTATGTAT 57.076 39.130 0.00 0.00 35.44 2.29
341 342 5.916969 GCGATTGTAAGCCAACTATGTATC 58.083 41.667 0.00 0.00 35.44 2.24
342 343 5.107065 GCGATTGTAAGCCAACTATGTATCC 60.107 44.000 0.00 0.00 35.44 2.59
343 344 6.223852 CGATTGTAAGCCAACTATGTATCCT 58.776 40.000 0.00 0.00 35.44 3.24
344 345 6.706270 CGATTGTAAGCCAACTATGTATCCTT 59.294 38.462 0.00 0.00 35.44 3.36
345 346 7.226720 CGATTGTAAGCCAACTATGTATCCTTT 59.773 37.037 0.00 0.00 35.44 3.11
346 347 8.823220 ATTGTAAGCCAACTATGTATCCTTTT 57.177 30.769 0.00 0.00 35.44 2.27
347 348 7.859325 TGTAAGCCAACTATGTATCCTTTTC 57.141 36.000 0.00 0.00 0.00 2.29
348 349 6.826741 TGTAAGCCAACTATGTATCCTTTTCC 59.173 38.462 0.00 0.00 0.00 3.13
349 350 5.717119 AGCCAACTATGTATCCTTTTCCT 57.283 39.130 0.00 0.00 0.00 3.36
350 351 6.079712 AGCCAACTATGTATCCTTTTCCTT 57.920 37.500 0.00 0.00 0.00 3.36
351 352 7.208064 AGCCAACTATGTATCCTTTTCCTTA 57.792 36.000 0.00 0.00 0.00 2.69
352 353 7.816411 AGCCAACTATGTATCCTTTTCCTTAT 58.184 34.615 0.00 0.00 0.00 1.73
353 354 8.282256 AGCCAACTATGTATCCTTTTCCTTATT 58.718 33.333 0.00 0.00 0.00 1.40
354 355 9.569122 GCCAACTATGTATCCTTTTCCTTATTA 57.431 33.333 0.00 0.00 0.00 0.98
372 373 9.567776 TCCTTATTATATTACATGGGTTGTGTG 57.432 33.333 0.00 0.00 39.48 3.82
373 374 9.567776 CCTTATTATATTACATGGGTTGTGTGA 57.432 33.333 0.00 0.00 39.48 3.58
377 378 9.866655 ATTATATTACATGGGTTGTGTGAAGAT 57.133 29.630 0.00 0.00 39.48 2.40
378 379 9.693739 TTATATTACATGGGTTGTGTGAAGATT 57.306 29.630 0.00 0.00 39.48 2.40
380 381 6.811253 TTACATGGGTTGTGTGAAGATTAC 57.189 37.500 0.00 0.00 39.48 1.89
381 382 4.079253 ACATGGGTTGTGTGAAGATTACC 58.921 43.478 0.00 0.00 37.11 2.85
382 383 4.202567 ACATGGGTTGTGTGAAGATTACCT 60.203 41.667 0.00 0.00 37.11 3.08
383 384 4.015872 TGGGTTGTGTGAAGATTACCTC 57.984 45.455 0.00 0.00 0.00 3.85
384 385 3.392947 TGGGTTGTGTGAAGATTACCTCA 59.607 43.478 0.00 0.00 0.00 3.86
385 386 3.751698 GGGTTGTGTGAAGATTACCTCAC 59.248 47.826 0.00 0.00 0.00 3.51
386 387 4.505039 GGGTTGTGTGAAGATTACCTCACT 60.505 45.833 4.07 0.00 34.51 3.41
387 388 5.063880 GGTTGTGTGAAGATTACCTCACTT 58.936 41.667 4.07 0.00 34.51 3.16
388 389 5.049405 GGTTGTGTGAAGATTACCTCACTTG 60.049 44.000 4.07 0.00 34.51 3.16
389 390 4.065088 TGTGTGAAGATTACCTCACTTGC 58.935 43.478 4.07 0.00 34.51 4.01
390 391 3.123621 GTGTGAAGATTACCTCACTTGCG 59.876 47.826 4.07 0.00 34.51 4.85
391 392 3.006430 TGTGAAGATTACCTCACTTGCGA 59.994 43.478 4.07 0.00 34.51 5.10
392 393 3.368236 GTGAAGATTACCTCACTTGCGAC 59.632 47.826 0.00 0.00 0.00 5.19
393 394 3.006430 TGAAGATTACCTCACTTGCGACA 59.994 43.478 0.00 0.00 0.00 4.35
394 395 3.895232 AGATTACCTCACTTGCGACAT 57.105 42.857 0.00 0.00 0.00 3.06
395 396 5.105513 TGAAGATTACCTCACTTGCGACATA 60.106 40.000 0.00 0.00 0.00 2.29
396 397 5.537300 AGATTACCTCACTTGCGACATAT 57.463 39.130 0.00 0.00 0.00 1.78
397 398 5.292765 AGATTACCTCACTTGCGACATATG 58.707 41.667 0.00 0.00 0.00 1.78
398 399 1.656652 ACCTCACTTGCGACATATGC 58.343 50.000 1.58 0.00 0.00 3.14
399 400 0.940126 CCTCACTTGCGACATATGCC 59.060 55.000 1.58 0.00 0.00 4.40
400 401 1.473965 CCTCACTTGCGACATATGCCT 60.474 52.381 1.58 0.00 0.00 4.75
401 402 2.283298 CTCACTTGCGACATATGCCTT 58.717 47.619 1.58 0.00 0.00 4.35
402 403 2.279741 TCACTTGCGACATATGCCTTC 58.720 47.619 1.58 0.00 0.00 3.46
403 404 2.009051 CACTTGCGACATATGCCTTCA 58.991 47.619 1.58 0.00 0.00 3.02
404 405 2.419673 CACTTGCGACATATGCCTTCAA 59.580 45.455 1.58 1.84 0.00 2.69
405 406 3.065786 CACTTGCGACATATGCCTTCAAT 59.934 43.478 1.58 0.00 0.00 2.57
406 407 3.065786 ACTTGCGACATATGCCTTCAATG 59.934 43.478 1.58 0.76 0.00 2.82
407 408 1.334556 TGCGACATATGCCTTCAATGC 59.665 47.619 1.58 0.00 0.00 3.56
408 409 1.661178 GCGACATATGCCTTCAATGCG 60.661 52.381 1.58 0.00 0.00 4.73
409 410 1.866601 CGACATATGCCTTCAATGCGA 59.133 47.619 1.58 0.00 0.00 5.10
410 411 2.481568 CGACATATGCCTTCAATGCGAT 59.518 45.455 1.58 0.00 0.00 4.58
411 412 3.058708 CGACATATGCCTTCAATGCGATT 60.059 43.478 1.58 0.00 0.00 3.34
412 413 4.152223 CGACATATGCCTTCAATGCGATTA 59.848 41.667 1.58 0.00 0.00 1.75
413 414 5.163824 CGACATATGCCTTCAATGCGATTAT 60.164 40.000 1.58 0.00 0.00 1.28
414 415 5.946298 ACATATGCCTTCAATGCGATTATG 58.054 37.500 1.58 0.00 0.00 1.90
415 416 2.780065 TGCCTTCAATGCGATTATGC 57.220 45.000 0.00 0.00 0.00 3.14
416 417 1.337703 TGCCTTCAATGCGATTATGCC 59.662 47.619 0.00 0.00 0.00 4.40
417 418 1.610522 GCCTTCAATGCGATTATGCCT 59.389 47.619 0.00 0.00 0.00 4.75
418 419 2.351157 GCCTTCAATGCGATTATGCCTC 60.351 50.000 0.00 0.00 0.00 4.70
419 420 3.144506 CCTTCAATGCGATTATGCCTCT 58.855 45.455 0.00 0.00 0.00 3.69
420 421 4.318332 CCTTCAATGCGATTATGCCTCTA 58.682 43.478 0.00 0.00 0.00 2.43
421 422 4.756642 CCTTCAATGCGATTATGCCTCTAA 59.243 41.667 0.00 0.00 0.00 2.10
422 423 5.106791 CCTTCAATGCGATTATGCCTCTAAG 60.107 44.000 0.00 0.00 0.00 2.18
423 424 4.960938 TCAATGCGATTATGCCTCTAAGT 58.039 39.130 0.00 0.00 0.00 2.24
424 425 4.991056 TCAATGCGATTATGCCTCTAAGTC 59.009 41.667 0.00 0.00 0.00 3.01
425 426 3.013276 TGCGATTATGCCTCTAAGTCG 57.987 47.619 0.00 0.00 0.00 4.18
426 427 2.361119 TGCGATTATGCCTCTAAGTCGT 59.639 45.455 0.00 0.00 0.00 4.34
427 428 2.726760 GCGATTATGCCTCTAAGTCGTG 59.273 50.000 0.00 0.00 0.00 4.35
428 429 2.726760 CGATTATGCCTCTAAGTCGTGC 59.273 50.000 0.00 0.00 0.00 5.34
429 430 2.596904 TTATGCCTCTAAGTCGTGCC 57.403 50.000 0.00 0.00 0.00 5.01
430 431 1.776662 TATGCCTCTAAGTCGTGCCT 58.223 50.000 0.00 0.00 0.00 4.75
431 432 0.461961 ATGCCTCTAAGTCGTGCCTC 59.538 55.000 0.00 0.00 0.00 4.70
432 433 1.226717 GCCTCTAAGTCGTGCCTCG 60.227 63.158 0.00 0.00 41.41 4.63
433 434 1.654954 GCCTCTAAGTCGTGCCTCGA 61.655 60.000 0.00 0.00 46.83 4.04
442 443 3.986006 GTGCCTCGACACGTGGGA 61.986 66.667 21.57 15.34 40.31 4.37
443 444 3.680786 TGCCTCGACACGTGGGAG 61.681 66.667 24.04 24.04 40.31 4.30
444 445 3.371063 GCCTCGACACGTGGGAGA 61.371 66.667 29.41 19.95 40.31 3.71
445 446 2.711922 GCCTCGACACGTGGGAGAT 61.712 63.158 29.41 7.79 40.31 2.75
446 447 1.381928 GCCTCGACACGTGGGAGATA 61.382 60.000 29.41 7.54 40.31 1.98
447 448 1.319541 CCTCGACACGTGGGAGATAT 58.680 55.000 29.41 6.39 36.95 1.63
448 449 2.501261 CCTCGACACGTGGGAGATATA 58.499 52.381 29.41 5.30 36.95 0.86
449 450 2.484651 CCTCGACACGTGGGAGATATAG 59.515 54.545 29.41 15.13 36.95 1.31
450 451 3.139850 CTCGACACGTGGGAGATATAGT 58.860 50.000 25.80 0.62 0.00 2.12
451 452 3.136763 TCGACACGTGGGAGATATAGTC 58.863 50.000 21.57 2.91 0.00 2.59
452 453 2.096367 CGACACGTGGGAGATATAGTCG 60.096 54.545 21.57 11.71 41.00 4.18
453 454 1.607628 ACACGTGGGAGATATAGTCGC 59.392 52.381 21.57 0.00 0.00 5.19
454 455 1.607148 CACGTGGGAGATATAGTCGCA 59.393 52.381 7.95 1.32 34.73 5.10
455 456 2.229062 CACGTGGGAGATATAGTCGCAT 59.771 50.000 7.95 0.00 38.90 4.73
456 457 2.488545 ACGTGGGAGATATAGTCGCATC 59.511 50.000 7.37 2.73 38.90 3.91
457 458 2.476352 CGTGGGAGATATAGTCGCATCG 60.476 54.545 7.37 8.73 38.90 3.84
458 459 2.747989 GTGGGAGATATAGTCGCATCGA 59.252 50.000 7.37 0.00 38.90 3.59
459 460 3.010420 TGGGAGATATAGTCGCATCGAG 58.990 50.000 0.00 0.00 36.23 4.04
460 461 2.356382 GGGAGATATAGTCGCATCGAGG 59.644 54.545 0.00 0.00 36.23 4.63
461 462 2.356382 GGAGATATAGTCGCATCGAGGG 59.644 54.545 0.00 0.00 36.23 4.30
462 463 1.746220 AGATATAGTCGCATCGAGGGC 59.254 52.381 0.00 0.00 36.23 5.19
575 576 1.682849 CATTGTCCGGGAGTTGGGA 59.317 57.895 0.00 0.00 0.00 4.37
606 607 3.533606 CGAAGGACAAGATGACTCCAT 57.466 47.619 0.00 0.00 35.29 3.41
610 611 4.271807 AGGACAAGATGACTCCATAGGA 57.728 45.455 0.00 0.00 32.09 2.94
635 636 1.915614 AAGCGCTCATCAGCCGTTTG 61.916 55.000 12.06 0.00 43.56 2.93
651 652 0.110486 TTTGAAGGAGCCACTCACCC 59.890 55.000 0.00 0.00 31.08 4.61
741 743 1.592400 CGTTGGACCTGACGGAGCTA 61.592 60.000 11.62 0.00 35.74 3.32
778 784 9.517609 CCAGTAGTTGTTATGTTAGTCTACATC 57.482 37.037 0.00 0.00 39.39 3.06
808 814 3.314331 CGAGGGTGGCTGACCTGT 61.314 66.667 5.57 0.00 45.33 4.00
995 1002 1.808411 TTCGGAGAAATGCTGGTGTC 58.192 50.000 0.00 0.00 45.90 3.67
1052 1059 3.009033 TGGAACATCCGAGGATTGAACTT 59.991 43.478 1.12 0.00 40.17 2.66
1085 1092 1.070134 AGCTACCGTTGCTGAAGTTGA 59.930 47.619 6.68 0.00 39.56 3.18
1089 1096 1.873591 ACCGTTGCTGAAGTTGATGTC 59.126 47.619 0.00 0.00 0.00 3.06
1147 1154 2.191128 AATCTCAACCTGGACTGCAC 57.809 50.000 0.00 0.00 0.00 4.57
1197 1204 1.397343 CTTAGAGACTGCGTCGTGCTA 59.603 52.381 0.00 4.76 46.63 3.49
1684 1703 1.531423 CTGTTCCACTGCTTGCTCAT 58.469 50.000 0.00 0.00 0.00 2.90
1783 1802 5.166398 CAAAATTTCCTCACTTCCATGAGC 58.834 41.667 0.00 0.00 44.12 4.26
1981 2936 0.990374 ATCAAGGCTGCTGACTCCTT 59.010 50.000 0.00 0.00 40.60 3.36
2307 3267 3.590574 GTTCAGGGTGGGGGCCTT 61.591 66.667 0.84 0.00 0.00 4.35
2323 3283 3.117663 GGGCCTTGATAACCCATTCACTA 60.118 47.826 0.84 0.00 43.64 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 8.969267 CGCGAGATCAAGACTATTTAAGTTTAT 58.031 33.333 0.00 0.00 39.07 1.40
13 14 7.434307 CCGCGAGATCAAGACTATTTAAGTTTA 59.566 37.037 8.23 0.00 39.07 2.01
14 15 6.255887 CCGCGAGATCAAGACTATTTAAGTTT 59.744 38.462 8.23 0.00 39.07 2.66
15 16 5.749109 CCGCGAGATCAAGACTATTTAAGTT 59.251 40.000 8.23 0.00 39.07 2.66
16 17 5.282510 CCGCGAGATCAAGACTATTTAAGT 58.717 41.667 8.23 0.00 42.80 2.24
17 18 4.681942 CCCGCGAGATCAAGACTATTTAAG 59.318 45.833 8.23 0.00 0.00 1.85
18 19 4.098960 ACCCGCGAGATCAAGACTATTTAA 59.901 41.667 8.23 0.00 0.00 1.52
19 20 3.635373 ACCCGCGAGATCAAGACTATTTA 59.365 43.478 8.23 0.00 0.00 1.40
20 21 2.431057 ACCCGCGAGATCAAGACTATTT 59.569 45.455 8.23 0.00 0.00 1.40
21 22 2.032620 ACCCGCGAGATCAAGACTATT 58.967 47.619 8.23 0.00 0.00 1.73
22 23 1.338337 CACCCGCGAGATCAAGACTAT 59.662 52.381 8.23 0.00 0.00 2.12
23 24 0.738975 CACCCGCGAGATCAAGACTA 59.261 55.000 8.23 0.00 0.00 2.59
24 25 1.513158 CACCCGCGAGATCAAGACT 59.487 57.895 8.23 0.00 0.00 3.24
25 26 2.167861 GCACCCGCGAGATCAAGAC 61.168 63.158 8.23 0.00 0.00 3.01
26 27 2.184322 GCACCCGCGAGATCAAGA 59.816 61.111 8.23 0.00 0.00 3.02
36 37 3.869272 CAGCAATCTCGCACCCGC 61.869 66.667 0.00 0.00 0.00 6.13
37 38 2.125552 TCAGCAATCTCGCACCCG 60.126 61.111 0.00 0.00 0.00 5.28
38 39 1.078848 ACTCAGCAATCTCGCACCC 60.079 57.895 0.00 0.00 0.00 4.61
39 40 1.086634 GGACTCAGCAATCTCGCACC 61.087 60.000 0.00 0.00 0.00 5.01
40 41 1.086634 GGGACTCAGCAATCTCGCAC 61.087 60.000 0.00 0.00 0.00 5.34
41 42 1.219124 GGGACTCAGCAATCTCGCA 59.781 57.895 0.00 0.00 0.00 5.10
42 43 1.522580 GGGGACTCAGCAATCTCGC 60.523 63.158 0.00 0.00 0.00 5.03
43 44 1.227089 CGGGGACTCAGCAATCTCG 60.227 63.158 0.00 0.00 0.00 4.04
44 45 0.460987 CACGGGGACTCAGCAATCTC 60.461 60.000 0.00 0.00 0.00 2.75
45 46 1.599047 CACGGGGACTCAGCAATCT 59.401 57.895 0.00 0.00 0.00 2.40
46 47 1.450312 CCACGGGGACTCAGCAATC 60.450 63.158 0.00 0.00 35.59 2.67
47 48 2.671070 CCACGGGGACTCAGCAAT 59.329 61.111 0.00 0.00 35.59 3.56
48 49 4.329545 GCCACGGGGACTCAGCAA 62.330 66.667 8.67 0.00 35.59 3.91
50 51 4.459089 GAGCCACGGGGACTCAGC 62.459 72.222 8.67 0.00 37.32 4.26
51 52 2.997315 TGAGCCACGGGGACTCAG 60.997 66.667 22.02 0.00 40.24 3.35
52 53 3.311110 GTGAGCCACGGGGACTCA 61.311 66.667 22.02 22.02 41.74 3.41
53 54 3.302347 CTGTGAGCCACGGGGACTC 62.302 68.421 8.67 14.95 37.12 3.36
54 55 3.314331 CTGTGAGCCACGGGGACT 61.314 66.667 8.67 3.39 37.12 3.85
55 56 1.327690 TATCTGTGAGCCACGGGGAC 61.328 60.000 8.67 0.00 40.76 4.46
56 57 1.001120 TATCTGTGAGCCACGGGGA 59.999 57.895 8.67 0.00 40.76 4.81
57 58 1.144057 GTATCTGTGAGCCACGGGG 59.856 63.158 0.00 0.00 40.76 5.73
58 59 0.537188 AAGTATCTGTGAGCCACGGG 59.463 55.000 12.44 0.00 40.76 5.28
59 60 1.471676 GGAAGTATCTGTGAGCCACGG 60.472 57.143 7.59 7.59 41.65 4.94
60 61 1.204704 TGGAAGTATCTGTGAGCCACG 59.795 52.381 1.66 0.00 37.14 4.94
61 62 3.334583 TTGGAAGTATCTGTGAGCCAC 57.665 47.619 0.00 0.00 34.56 5.01
62 63 4.072131 GTTTTGGAAGTATCTGTGAGCCA 58.928 43.478 0.00 0.00 0.00 4.75
63 64 3.440522 GGTTTTGGAAGTATCTGTGAGCC 59.559 47.826 0.00 0.00 0.00 4.70
64 65 4.072131 TGGTTTTGGAAGTATCTGTGAGC 58.928 43.478 0.00 0.00 0.00 4.26
65 66 4.154918 GCTGGTTTTGGAAGTATCTGTGAG 59.845 45.833 0.00 0.00 0.00 3.51
66 67 4.072131 GCTGGTTTTGGAAGTATCTGTGA 58.928 43.478 0.00 0.00 0.00 3.58
67 68 4.074970 AGCTGGTTTTGGAAGTATCTGTG 58.925 43.478 0.00 0.00 0.00 3.66
68 69 4.373156 AGCTGGTTTTGGAAGTATCTGT 57.627 40.909 0.00 0.00 0.00 3.41
69 70 4.616835 GCAAGCTGGTTTTGGAAGTATCTG 60.617 45.833 0.00 0.00 0.00 2.90
70 71 3.507622 GCAAGCTGGTTTTGGAAGTATCT 59.492 43.478 0.00 0.00 0.00 1.98
71 72 3.255642 TGCAAGCTGGTTTTGGAAGTATC 59.744 43.478 0.00 0.00 0.00 2.24
72 73 3.230134 TGCAAGCTGGTTTTGGAAGTAT 58.770 40.909 0.00 0.00 0.00 2.12
73 74 2.622942 CTGCAAGCTGGTTTTGGAAGTA 59.377 45.455 0.00 0.00 0.00 2.24
74 75 1.410153 CTGCAAGCTGGTTTTGGAAGT 59.590 47.619 0.00 0.00 0.00 3.01
75 76 1.269936 CCTGCAAGCTGGTTTTGGAAG 60.270 52.381 9.54 0.00 0.00 3.46
76 77 0.752054 CCTGCAAGCTGGTTTTGGAA 59.248 50.000 9.54 0.00 0.00 3.53
77 78 0.396974 ACCTGCAAGCTGGTTTTGGA 60.397 50.000 16.62 0.00 44.20 3.53
78 79 0.249573 CACCTGCAAGCTGGTTTTGG 60.250 55.000 19.27 6.37 44.20 3.28
79 80 0.877213 GCACCTGCAAGCTGGTTTTG 60.877 55.000 19.27 10.83 44.20 2.44
80 81 1.442987 GCACCTGCAAGCTGGTTTT 59.557 52.632 19.27 0.00 44.20 2.43
81 82 2.501602 GGCACCTGCAAGCTGGTTT 61.502 57.895 19.27 0.00 44.20 3.27
82 83 2.914097 GGCACCTGCAAGCTGGTT 60.914 61.111 19.27 4.44 44.20 3.67
85 86 3.289834 AACGGCACCTGCAAGCTG 61.290 61.111 11.48 11.48 44.36 4.24
86 87 3.289834 CAACGGCACCTGCAAGCT 61.290 61.111 0.00 0.00 44.36 3.74
87 88 3.259425 CTCAACGGCACCTGCAAGC 62.259 63.158 0.00 0.00 44.36 4.01
88 89 1.845809 GACTCAACGGCACCTGCAAG 61.846 60.000 0.00 0.00 44.36 4.01
89 90 1.891919 GACTCAACGGCACCTGCAA 60.892 57.895 0.00 0.00 44.36 4.08
90 91 2.280797 GACTCAACGGCACCTGCA 60.281 61.111 0.00 0.00 44.36 4.41
91 92 3.050275 GGACTCAACGGCACCTGC 61.050 66.667 0.00 0.00 41.14 4.85
92 93 2.149803 TACGGACTCAACGGCACCTG 62.150 60.000 0.00 0.00 35.23 4.00
93 94 1.904865 TACGGACTCAACGGCACCT 60.905 57.895 0.00 0.00 35.23 4.00
94 95 1.735559 GTACGGACTCAACGGCACC 60.736 63.158 0.00 0.00 35.23 5.01
95 96 0.598158 TTGTACGGACTCAACGGCAC 60.598 55.000 0.00 0.00 35.23 5.01
96 97 0.319211 CTTGTACGGACTCAACGGCA 60.319 55.000 0.00 0.00 35.23 5.69
97 98 0.319297 ACTTGTACGGACTCAACGGC 60.319 55.000 0.00 0.00 35.23 5.68
98 99 1.001048 TCACTTGTACGGACTCAACGG 60.001 52.381 0.00 0.00 35.23 4.44
99 100 2.049228 GTCACTTGTACGGACTCAACG 58.951 52.381 0.00 0.00 37.36 4.10
100 101 2.049228 CGTCACTTGTACGGACTCAAC 58.951 52.381 0.00 0.00 36.71 3.18
101 102 1.601162 GCGTCACTTGTACGGACTCAA 60.601 52.381 0.00 0.00 40.64 3.02
102 103 0.039798 GCGTCACTTGTACGGACTCA 60.040 55.000 0.00 0.00 40.64 3.41
103 104 0.039798 TGCGTCACTTGTACGGACTC 60.040 55.000 0.00 0.00 40.64 3.36
104 105 0.386476 TTGCGTCACTTGTACGGACT 59.614 50.000 0.00 0.00 40.48 3.85
105 106 0.505655 GTTGCGTCACTTGTACGGAC 59.494 55.000 0.00 0.00 40.48 4.79
106 107 0.598158 GGTTGCGTCACTTGTACGGA 60.598 55.000 0.00 0.00 40.64 4.69
107 108 0.876777 TGGTTGCGTCACTTGTACGG 60.877 55.000 0.00 0.00 40.64 4.02
108 109 0.931702 TTGGTTGCGTCACTTGTACG 59.068 50.000 0.00 0.00 43.12 3.67
109 110 1.333791 GCTTGGTTGCGTCACTTGTAC 60.334 52.381 0.00 0.00 0.00 2.90
110 111 0.941542 GCTTGGTTGCGTCACTTGTA 59.058 50.000 0.00 0.00 0.00 2.41
111 112 0.748005 AGCTTGGTTGCGTCACTTGT 60.748 50.000 0.00 0.00 38.13 3.16
112 113 0.040958 GAGCTTGGTTGCGTCACTTG 60.041 55.000 0.00 0.00 38.13 3.16
113 114 0.463654 TGAGCTTGGTTGCGTCACTT 60.464 50.000 0.00 0.00 38.13 3.16
114 115 0.882042 CTGAGCTTGGTTGCGTCACT 60.882 55.000 0.00 0.00 38.13 3.41
115 116 1.571460 CTGAGCTTGGTTGCGTCAC 59.429 57.895 0.00 0.00 38.13 3.67
116 117 1.597854 CCTGAGCTTGGTTGCGTCA 60.598 57.895 0.00 0.00 38.13 4.35
117 118 1.294659 CTCCTGAGCTTGGTTGCGTC 61.295 60.000 6.60 0.00 38.13 5.19
118 119 1.302033 CTCCTGAGCTTGGTTGCGT 60.302 57.895 6.60 0.00 38.13 5.24
119 120 2.037136 CCTCCTGAGCTTGGTTGCG 61.037 63.158 6.60 0.00 38.13 4.85
120 121 0.676151 CTCCTCCTGAGCTTGGTTGC 60.676 60.000 6.60 0.00 33.47 4.17
121 122 3.547567 CTCCTCCTGAGCTTGGTTG 57.452 57.895 6.60 2.44 33.47 3.77
129 130 1.337703 CTTCATCGAGCTCCTCCTGAG 59.662 57.143 8.47 0.00 44.47 3.35
130 131 1.064389 TCTTCATCGAGCTCCTCCTGA 60.064 52.381 8.47 3.21 0.00 3.86
131 132 1.397672 TCTTCATCGAGCTCCTCCTG 58.602 55.000 8.47 0.68 0.00 3.86
132 133 2.158475 AGATCTTCATCGAGCTCCTCCT 60.158 50.000 8.47 0.00 33.75 3.69
133 134 2.238521 AGATCTTCATCGAGCTCCTCC 58.761 52.381 8.47 0.00 33.75 4.30
134 135 3.068024 ACAAGATCTTCATCGAGCTCCTC 59.932 47.826 8.47 0.00 33.75 3.71
135 136 3.030291 ACAAGATCTTCATCGAGCTCCT 58.970 45.455 8.47 0.00 33.75 3.69
136 137 3.122297 CACAAGATCTTCATCGAGCTCC 58.878 50.000 8.47 0.00 33.75 4.70
137 138 2.539274 GCACAAGATCTTCATCGAGCTC 59.461 50.000 4.57 2.73 33.75 4.09
138 139 2.168106 AGCACAAGATCTTCATCGAGCT 59.832 45.455 4.57 7.27 33.75 4.09
139 140 2.548875 AGCACAAGATCTTCATCGAGC 58.451 47.619 4.57 4.98 33.75 5.03
140 141 4.391216 ACAAAGCACAAGATCTTCATCGAG 59.609 41.667 4.57 0.00 33.75 4.04
141 142 4.152938 CACAAAGCACAAGATCTTCATCGA 59.847 41.667 4.57 0.00 33.75 3.59
142 143 4.083643 ACACAAAGCACAAGATCTTCATCG 60.084 41.667 4.57 0.00 33.75 3.84
143 144 5.368256 ACACAAAGCACAAGATCTTCATC 57.632 39.130 4.57 0.00 0.00 2.92
144 145 5.068198 ACAACACAAAGCACAAGATCTTCAT 59.932 36.000 4.57 0.00 0.00 2.57
145 146 4.398988 ACAACACAAAGCACAAGATCTTCA 59.601 37.500 4.57 0.00 0.00 3.02
146 147 4.925068 ACAACACAAAGCACAAGATCTTC 58.075 39.130 4.57 0.00 0.00 2.87
147 148 4.989279 ACAACACAAAGCACAAGATCTT 57.011 36.364 0.88 0.88 0.00 2.40
148 149 4.989279 AACAACACAAAGCACAAGATCT 57.011 36.364 0.00 0.00 0.00 2.75
149 150 4.504097 GGAAACAACACAAAGCACAAGATC 59.496 41.667 0.00 0.00 0.00 2.75
150 151 4.432712 GGAAACAACACAAAGCACAAGAT 58.567 39.130 0.00 0.00 0.00 2.40
151 152 3.671971 CGGAAACAACACAAAGCACAAGA 60.672 43.478 0.00 0.00 0.00 3.02
152 153 2.598192 CGGAAACAACACAAAGCACAAG 59.402 45.455 0.00 0.00 0.00 3.16
153 154 2.029828 ACGGAAACAACACAAAGCACAA 60.030 40.909 0.00 0.00 0.00 3.33
154 155 1.542030 ACGGAAACAACACAAAGCACA 59.458 42.857 0.00 0.00 0.00 4.57
155 156 2.271821 ACGGAAACAACACAAAGCAC 57.728 45.000 0.00 0.00 0.00 4.40
156 157 2.490115 AGAACGGAAACAACACAAAGCA 59.510 40.909 0.00 0.00 0.00 3.91
157 158 3.145212 AGAACGGAAACAACACAAAGC 57.855 42.857 0.00 0.00 0.00 3.51
158 159 5.479716 ACTAGAACGGAAACAACACAAAG 57.520 39.130 0.00 0.00 0.00 2.77
159 160 5.411977 TCAACTAGAACGGAAACAACACAAA 59.588 36.000 0.00 0.00 0.00 2.83
160 161 4.936411 TCAACTAGAACGGAAACAACACAA 59.064 37.500 0.00 0.00 0.00 3.33
161 162 4.505808 TCAACTAGAACGGAAACAACACA 58.494 39.130 0.00 0.00 0.00 3.72
162 163 5.235616 TGATCAACTAGAACGGAAACAACAC 59.764 40.000 0.00 0.00 0.00 3.32
163 164 5.361427 TGATCAACTAGAACGGAAACAACA 58.639 37.500 0.00 0.00 0.00 3.33
164 165 5.465724 ACTGATCAACTAGAACGGAAACAAC 59.534 40.000 0.00 0.00 0.00 3.32
165 166 5.607477 ACTGATCAACTAGAACGGAAACAA 58.393 37.500 0.00 0.00 0.00 2.83
166 167 5.209818 ACTGATCAACTAGAACGGAAACA 57.790 39.130 0.00 0.00 0.00 2.83
167 168 6.308282 CACTACTGATCAACTAGAACGGAAAC 59.692 42.308 12.17 0.00 0.00 2.78
168 169 6.387465 CACTACTGATCAACTAGAACGGAAA 58.613 40.000 12.17 0.00 0.00 3.13
169 170 5.105877 CCACTACTGATCAACTAGAACGGAA 60.106 44.000 12.17 0.00 0.00 4.30
170 171 4.398358 CCACTACTGATCAACTAGAACGGA 59.602 45.833 12.17 0.00 0.00 4.69
171 172 4.398358 TCCACTACTGATCAACTAGAACGG 59.602 45.833 12.17 9.63 0.00 4.44
172 173 5.562506 TCCACTACTGATCAACTAGAACG 57.437 43.478 12.17 0.00 0.00 3.95
173 174 5.344884 GCTCCACTACTGATCAACTAGAAC 58.655 45.833 12.17 0.00 0.00 3.01
174 175 4.402793 GGCTCCACTACTGATCAACTAGAA 59.597 45.833 12.17 0.57 0.00 2.10
175 176 3.954904 GGCTCCACTACTGATCAACTAGA 59.045 47.826 12.17 0.00 0.00 2.43
176 177 3.068873 GGGCTCCACTACTGATCAACTAG 59.931 52.174 0.00 1.29 0.00 2.57
177 178 3.031736 GGGCTCCACTACTGATCAACTA 58.968 50.000 0.00 0.00 0.00 2.24
178 179 1.834263 GGGCTCCACTACTGATCAACT 59.166 52.381 0.00 0.00 0.00 3.16
179 180 1.555075 TGGGCTCCACTACTGATCAAC 59.445 52.381 0.00 0.00 0.00 3.18
180 181 1.833630 CTGGGCTCCACTACTGATCAA 59.166 52.381 0.00 0.00 0.00 2.57
181 182 1.273267 ACTGGGCTCCACTACTGATCA 60.273 52.381 0.00 0.00 0.00 2.92
182 183 1.490574 ACTGGGCTCCACTACTGATC 58.509 55.000 0.00 0.00 0.00 2.92
183 184 1.556911 CAACTGGGCTCCACTACTGAT 59.443 52.381 0.00 0.00 0.00 2.90
184 185 0.976641 CAACTGGGCTCCACTACTGA 59.023 55.000 0.00 0.00 0.00 3.41
185 186 0.036010 CCAACTGGGCTCCACTACTG 60.036 60.000 0.00 0.00 0.00 2.74
186 187 2.377136 CCAACTGGGCTCCACTACT 58.623 57.895 0.00 0.00 0.00 2.57
197 198 2.186903 CCGATCGACCCCAACTGG 59.813 66.667 18.66 0.00 0.00 4.00
198 199 2.186903 CCCGATCGACCCCAACTG 59.813 66.667 18.66 0.00 0.00 3.16
199 200 2.038329 TCCCGATCGACCCCAACT 59.962 61.111 18.66 0.00 0.00 3.16
200 201 2.186125 GTCCCGATCGACCCCAAC 59.814 66.667 18.66 1.40 0.00 3.77
201 202 3.078836 GGTCCCGATCGACCCCAA 61.079 66.667 18.66 0.00 45.72 4.12
206 207 0.801067 CGACAAAGGTCCCGATCGAC 60.801 60.000 18.66 7.62 41.13 4.20
207 208 1.509463 CGACAAAGGTCCCGATCGA 59.491 57.895 18.66 0.00 41.13 3.59
208 209 2.165301 GCGACAAAGGTCCCGATCG 61.165 63.158 8.51 8.51 41.13 3.69
209 210 0.462047 ATGCGACAAAGGTCCCGATC 60.462 55.000 0.00 0.00 41.13 3.69
210 211 0.035439 AATGCGACAAAGGTCCCGAT 60.035 50.000 0.00 0.00 41.13 4.18
211 212 0.250553 AAATGCGACAAAGGTCCCGA 60.251 50.000 0.00 0.00 41.13 5.14
212 213 0.109781 CAAATGCGACAAAGGTCCCG 60.110 55.000 0.00 0.00 41.13 5.14
213 214 0.243636 CCAAATGCGACAAAGGTCCC 59.756 55.000 0.00 0.00 41.13 4.46
214 215 0.243636 CCCAAATGCGACAAAGGTCC 59.756 55.000 0.00 0.00 41.13 4.46
215 216 0.243636 CCCCAAATGCGACAAAGGTC 59.756 55.000 0.00 0.00 40.77 3.85
216 217 0.469144 ACCCCAAATGCGACAAAGGT 60.469 50.000 0.00 0.00 0.00 3.50
217 218 0.678950 AACCCCAAATGCGACAAAGG 59.321 50.000 0.00 0.00 0.00 3.11
218 219 1.613437 AGAACCCCAAATGCGACAAAG 59.387 47.619 0.00 0.00 0.00 2.77
219 220 1.698506 AGAACCCCAAATGCGACAAA 58.301 45.000 0.00 0.00 0.00 2.83
220 221 1.611491 GAAGAACCCCAAATGCGACAA 59.389 47.619 0.00 0.00 0.00 3.18
221 222 1.202879 AGAAGAACCCCAAATGCGACA 60.203 47.619 0.00 0.00 0.00 4.35
222 223 1.534729 AGAAGAACCCCAAATGCGAC 58.465 50.000 0.00 0.00 0.00 5.19
223 224 2.286365 AAGAAGAACCCCAAATGCGA 57.714 45.000 0.00 0.00 0.00 5.10
224 225 3.385193 AAAAGAAGAACCCCAAATGCG 57.615 42.857 0.00 0.00 0.00 4.73
225 226 7.549134 CCTAAATAAAAGAAGAACCCCAAATGC 59.451 37.037 0.00 0.00 0.00 3.56
226 227 7.549134 GCCTAAATAAAAGAAGAACCCCAAATG 59.451 37.037 0.00 0.00 0.00 2.32
227 228 7.457852 AGCCTAAATAAAAGAAGAACCCCAAAT 59.542 33.333 0.00 0.00 0.00 2.32
228 229 6.785466 AGCCTAAATAAAAGAAGAACCCCAAA 59.215 34.615 0.00 0.00 0.00 3.28
229 230 6.319715 AGCCTAAATAAAAGAAGAACCCCAA 58.680 36.000 0.00 0.00 0.00 4.12
230 231 5.899278 AGCCTAAATAAAAGAAGAACCCCA 58.101 37.500 0.00 0.00 0.00 4.96
231 232 5.360144 GGAGCCTAAATAAAAGAAGAACCCC 59.640 44.000 0.00 0.00 0.00 4.95
232 233 5.066117 CGGAGCCTAAATAAAAGAAGAACCC 59.934 44.000 0.00 0.00 0.00 4.11
233 234 5.646793 ACGGAGCCTAAATAAAAGAAGAACC 59.353 40.000 0.00 0.00 0.00 3.62
234 235 6.738832 ACGGAGCCTAAATAAAAGAAGAAC 57.261 37.500 0.00 0.00 0.00 3.01
235 236 7.618137 ACTACGGAGCCTAAATAAAAGAAGAA 58.382 34.615 0.00 0.00 0.00 2.52
236 237 7.179076 ACTACGGAGCCTAAATAAAAGAAGA 57.821 36.000 0.00 0.00 0.00 2.87
237 238 6.198591 CGACTACGGAGCCTAAATAAAAGAAG 59.801 42.308 0.00 0.00 35.72 2.85
238 239 6.038356 CGACTACGGAGCCTAAATAAAAGAA 58.962 40.000 0.00 0.00 35.72 2.52
239 240 5.585390 CGACTACGGAGCCTAAATAAAAGA 58.415 41.667 0.00 0.00 35.72 2.52
240 241 5.885020 CGACTACGGAGCCTAAATAAAAG 57.115 43.478 0.00 0.00 35.72 2.27
255 256 1.227263 CAATCAGGGCCCGACTACG 60.227 63.158 18.44 0.21 39.43 3.51
256 257 1.117150 TACAATCAGGGCCCGACTAC 58.883 55.000 18.44 0.00 0.00 2.73
257 258 2.097110 ATACAATCAGGGCCCGACTA 57.903 50.000 18.44 3.10 0.00 2.59
258 259 1.213296 AATACAATCAGGGCCCGACT 58.787 50.000 18.44 3.59 0.00 4.18
259 260 1.676006 CAAATACAATCAGGGCCCGAC 59.324 52.381 18.44 0.00 0.00 4.79
260 261 1.409521 CCAAATACAATCAGGGCCCGA 60.410 52.381 18.44 17.56 0.00 5.14
261 262 1.032014 CCAAATACAATCAGGGCCCG 58.968 55.000 18.44 12.05 0.00 6.13
262 263 2.159179 ACCAAATACAATCAGGGCCC 57.841 50.000 16.46 16.46 0.00 5.80
263 264 2.831526 ACAACCAAATACAATCAGGGCC 59.168 45.455 0.00 0.00 0.00 5.80
264 265 4.244862 CAACAACCAAATACAATCAGGGC 58.755 43.478 0.00 0.00 0.00 5.19
265 266 5.467035 ACAACAACCAAATACAATCAGGG 57.533 39.130 0.00 0.00 0.00 4.45
266 267 7.063308 GCATTACAACAACCAAATACAATCAGG 59.937 37.037 0.00 0.00 0.00 3.86
267 268 7.814107 AGCATTACAACAACCAAATACAATCAG 59.186 33.333 0.00 0.00 0.00 2.90
268 269 7.665690 AGCATTACAACAACCAAATACAATCA 58.334 30.769 0.00 0.00 0.00 2.57
269 270 8.532977 AAGCATTACAACAACCAAATACAATC 57.467 30.769 0.00 0.00 0.00 2.67
270 271 8.900983 AAAGCATTACAACAACCAAATACAAT 57.099 26.923 0.00 0.00 0.00 2.71
271 272 9.988815 ATAAAGCATTACAACAACCAAATACAA 57.011 25.926 0.00 0.00 0.00 2.41
272 273 9.988815 AATAAAGCATTACAACAACCAAATACA 57.011 25.926 0.00 0.00 0.00 2.29
275 276 9.723601 ATGAATAAAGCATTACAACAACCAAAT 57.276 25.926 0.00 0.00 0.00 2.32
276 277 8.986847 CATGAATAAAGCATTACAACAACCAAA 58.013 29.630 0.00 0.00 0.00 3.28
277 278 8.147058 ACATGAATAAAGCATTACAACAACCAA 58.853 29.630 0.00 0.00 0.00 3.67
278 279 7.665690 ACATGAATAAAGCATTACAACAACCA 58.334 30.769 0.00 0.00 0.00 3.67
279 280 9.801873 ATACATGAATAAAGCATTACAACAACC 57.198 29.630 0.00 0.00 0.00 3.77
288 289 9.926158 TTCACACAAATACATGAATAAAGCATT 57.074 25.926 0.00 0.00 0.00 3.56
289 290 9.577110 CTTCACACAAATACATGAATAAAGCAT 57.423 29.630 0.00 0.00 31.00 3.79
290 291 8.575589 ACTTCACACAAATACATGAATAAAGCA 58.424 29.630 0.00 0.00 31.00 3.91
291 292 8.853345 CACTTCACACAAATACATGAATAAAGC 58.147 33.333 0.00 0.00 31.00 3.51
292 293 9.345517 CCACTTCACACAAATACATGAATAAAG 57.654 33.333 0.00 0.00 31.00 1.85
293 294 7.812191 GCCACTTCACACAAATACATGAATAAA 59.188 33.333 0.00 0.00 31.00 1.40
294 295 7.312154 GCCACTTCACACAAATACATGAATAA 58.688 34.615 0.00 0.00 31.00 1.40
295 296 6.403092 CGCCACTTCACACAAATACATGAATA 60.403 38.462 0.00 0.00 31.00 1.75
296 297 5.619757 CGCCACTTCACACAAATACATGAAT 60.620 40.000 0.00 0.00 31.00 2.57
297 298 4.320129 CGCCACTTCACACAAATACATGAA 60.320 41.667 0.00 0.00 0.00 2.57
298 299 3.188254 CGCCACTTCACACAAATACATGA 59.812 43.478 0.00 0.00 0.00 3.07
299 300 3.188254 TCGCCACTTCACACAAATACATG 59.812 43.478 0.00 0.00 0.00 3.21
300 301 3.407698 TCGCCACTTCACACAAATACAT 58.592 40.909 0.00 0.00 0.00 2.29
301 302 2.839975 TCGCCACTTCACACAAATACA 58.160 42.857 0.00 0.00 0.00 2.29
302 303 4.158384 CAATCGCCACTTCACACAAATAC 58.842 43.478 0.00 0.00 0.00 1.89
303 304 3.818210 ACAATCGCCACTTCACACAAATA 59.182 39.130 0.00 0.00 0.00 1.40
304 305 2.622942 ACAATCGCCACTTCACACAAAT 59.377 40.909 0.00 0.00 0.00 2.32
305 306 2.020720 ACAATCGCCACTTCACACAAA 58.979 42.857 0.00 0.00 0.00 2.83
306 307 1.674359 ACAATCGCCACTTCACACAA 58.326 45.000 0.00 0.00 0.00 3.33
307 308 2.535012 TACAATCGCCACTTCACACA 57.465 45.000 0.00 0.00 0.00 3.72
308 309 2.412847 GCTTACAATCGCCACTTCACAC 60.413 50.000 0.00 0.00 0.00 3.82
309 310 1.804151 GCTTACAATCGCCACTTCACA 59.196 47.619 0.00 0.00 0.00 3.58
310 311 1.130561 GGCTTACAATCGCCACTTCAC 59.869 52.381 0.00 0.00 45.59 3.18
311 312 1.448985 GGCTTACAATCGCCACTTCA 58.551 50.000 0.00 0.00 45.59 3.02
317 318 2.943033 ACATAGTTGGCTTACAATCGCC 59.057 45.455 0.00 0.00 46.46 5.54
318 319 5.107065 GGATACATAGTTGGCTTACAATCGC 60.107 44.000 0.00 0.00 41.95 4.58
319 320 6.223852 AGGATACATAGTTGGCTTACAATCG 58.776 40.000 0.00 0.00 39.78 3.34
320 321 8.451908 AAAGGATACATAGTTGGCTTACAATC 57.548 34.615 0.00 0.00 39.78 2.67
321 322 8.823220 AAAAGGATACATAGTTGGCTTACAAT 57.177 30.769 0.00 0.00 39.78 2.71
322 323 7.338449 GGAAAAGGATACATAGTTGGCTTACAA 59.662 37.037 0.00 0.00 41.41 2.41
323 324 6.826741 GGAAAAGGATACATAGTTGGCTTACA 59.173 38.462 0.00 0.00 41.41 2.41
324 325 7.054751 AGGAAAAGGATACATAGTTGGCTTAC 58.945 38.462 0.00 0.00 41.41 2.34
325 326 7.208064 AGGAAAAGGATACATAGTTGGCTTA 57.792 36.000 0.00 0.00 41.41 3.09
326 327 6.079712 AGGAAAAGGATACATAGTTGGCTT 57.920 37.500 0.00 0.00 41.41 4.35
327 328 5.717119 AGGAAAAGGATACATAGTTGGCT 57.283 39.130 0.00 0.00 41.41 4.75
328 329 8.465273 AATAAGGAAAAGGATACATAGTTGGC 57.535 34.615 0.00 0.00 41.41 4.52
346 347 9.567776 CACACAACCCATGTAATATAATAAGGA 57.432 33.333 0.00 0.00 41.46 3.36
347 348 9.567776 TCACACAACCCATGTAATATAATAAGG 57.432 33.333 0.00 0.00 41.46 2.69
351 352 9.866655 ATCTTCACACAACCCATGTAATATAAT 57.133 29.630 0.00 0.00 41.46 1.28
352 353 9.693739 AATCTTCACACAACCCATGTAATATAA 57.306 29.630 0.00 0.00 41.46 0.98
354 355 9.120538 GTAATCTTCACACAACCCATGTAATAT 57.879 33.333 0.00 0.00 41.46 1.28
355 356 7.554835 GGTAATCTTCACACAACCCATGTAATA 59.445 37.037 0.00 0.00 41.46 0.98
356 357 6.377146 GGTAATCTTCACACAACCCATGTAAT 59.623 38.462 0.00 0.00 41.46 1.89
357 358 5.708230 GGTAATCTTCACACAACCCATGTAA 59.292 40.000 0.00 0.00 41.46 2.41
358 359 5.013704 AGGTAATCTTCACACAACCCATGTA 59.986 40.000 0.00 0.00 41.46 2.29
359 360 4.079253 GGTAATCTTCACACAACCCATGT 58.921 43.478 0.00 0.00 45.34 3.21
360 361 4.335416 AGGTAATCTTCACACAACCCATG 58.665 43.478 0.00 0.00 0.00 3.66
361 362 4.042809 TGAGGTAATCTTCACACAACCCAT 59.957 41.667 0.00 0.00 0.00 4.00
362 363 3.392947 TGAGGTAATCTTCACACAACCCA 59.607 43.478 0.00 0.00 0.00 4.51
363 364 3.751698 GTGAGGTAATCTTCACACAACCC 59.248 47.826 5.78 0.00 45.79 4.11
370 371 3.368236 GTCGCAAGTGAGGTAATCTTCAC 59.632 47.826 2.97 2.97 46.51 3.18
371 372 3.006430 TGTCGCAAGTGAGGTAATCTTCA 59.994 43.478 0.00 0.00 39.48 3.02
372 373 3.585862 TGTCGCAAGTGAGGTAATCTTC 58.414 45.455 0.00 0.00 39.48 2.87
373 374 3.678056 TGTCGCAAGTGAGGTAATCTT 57.322 42.857 0.00 0.00 39.48 2.40
374 375 3.895232 ATGTCGCAAGTGAGGTAATCT 57.105 42.857 0.00 0.00 39.48 2.40
375 376 4.084328 GCATATGTCGCAAGTGAGGTAATC 60.084 45.833 4.29 0.00 39.48 1.75
376 377 3.809832 GCATATGTCGCAAGTGAGGTAAT 59.190 43.478 4.29 0.00 39.48 1.89
377 378 3.194861 GCATATGTCGCAAGTGAGGTAA 58.805 45.455 4.29 0.00 39.48 2.85
378 379 2.483013 GGCATATGTCGCAAGTGAGGTA 60.483 50.000 4.29 0.00 39.48 3.08
379 380 1.656652 GCATATGTCGCAAGTGAGGT 58.343 50.000 4.29 0.00 39.48 3.85
380 381 0.940126 GGCATATGTCGCAAGTGAGG 59.060 55.000 4.29 0.00 39.48 3.86
381 382 1.945387 AGGCATATGTCGCAAGTGAG 58.055 50.000 4.29 0.00 39.48 3.51
382 383 2.279741 GAAGGCATATGTCGCAAGTGA 58.720 47.619 4.29 0.00 39.48 3.41
383 384 2.009051 TGAAGGCATATGTCGCAAGTG 58.991 47.619 4.29 0.00 39.48 3.16
384 385 2.401583 TGAAGGCATATGTCGCAAGT 57.598 45.000 4.29 0.00 39.48 3.16
385 386 3.624900 CATTGAAGGCATATGTCGCAAG 58.375 45.455 18.71 10.57 0.00 4.01
386 387 2.223548 GCATTGAAGGCATATGTCGCAA 60.224 45.455 17.02 17.02 0.00 4.85
387 388 1.334556 GCATTGAAGGCATATGTCGCA 59.665 47.619 4.29 3.22 0.00 5.10
388 389 1.661178 CGCATTGAAGGCATATGTCGC 60.661 52.381 1.88 0.39 0.00 5.19
389 390 1.866601 TCGCATTGAAGGCATATGTCG 59.133 47.619 1.88 0.00 0.00 4.35
390 391 4.494350 AATCGCATTGAAGGCATATGTC 57.506 40.909 1.88 0.00 0.00 3.06
391 392 5.620654 GCATAATCGCATTGAAGGCATATGT 60.621 40.000 15.52 0.00 30.75 2.29
392 393 4.796830 GCATAATCGCATTGAAGGCATATG 59.203 41.667 1.88 8.44 0.00 1.78
393 394 4.142315 GGCATAATCGCATTGAAGGCATAT 60.142 41.667 1.88 0.00 0.00 1.78
394 395 3.191162 GGCATAATCGCATTGAAGGCATA 59.809 43.478 1.88 0.00 0.00 3.14
395 396 2.029649 GGCATAATCGCATTGAAGGCAT 60.030 45.455 1.88 0.00 0.00 4.40
396 397 1.337703 GGCATAATCGCATTGAAGGCA 59.662 47.619 1.88 0.00 0.00 4.75
397 398 1.610522 AGGCATAATCGCATTGAAGGC 59.389 47.619 0.00 0.00 0.00 4.35
398 399 3.144506 AGAGGCATAATCGCATTGAAGG 58.855 45.455 0.00 0.00 0.00 3.46
399 400 5.468072 ACTTAGAGGCATAATCGCATTGAAG 59.532 40.000 0.00 0.00 0.00 3.02
400 401 5.368145 ACTTAGAGGCATAATCGCATTGAA 58.632 37.500 0.00 0.00 0.00 2.69
401 402 4.960938 ACTTAGAGGCATAATCGCATTGA 58.039 39.130 0.00 0.00 0.00 2.57
402 403 4.143242 CGACTTAGAGGCATAATCGCATTG 60.143 45.833 0.00 0.00 0.00 2.82
403 404 3.990469 CGACTTAGAGGCATAATCGCATT 59.010 43.478 0.00 0.00 0.00 3.56
404 405 3.005897 ACGACTTAGAGGCATAATCGCAT 59.994 43.478 0.00 0.00 0.00 4.73
405 406 2.361119 ACGACTTAGAGGCATAATCGCA 59.639 45.455 0.00 0.00 0.00 5.10
406 407 2.726760 CACGACTTAGAGGCATAATCGC 59.273 50.000 0.00 0.00 0.00 4.58
407 408 2.726760 GCACGACTTAGAGGCATAATCG 59.273 50.000 0.00 0.00 0.00 3.34
408 409 3.060602 GGCACGACTTAGAGGCATAATC 58.939 50.000 0.00 0.00 0.00 1.75
409 410 2.700897 AGGCACGACTTAGAGGCATAAT 59.299 45.455 0.00 0.00 0.00 1.28
410 411 2.100916 GAGGCACGACTTAGAGGCATAA 59.899 50.000 0.00 0.00 0.00 1.90
411 412 1.681793 GAGGCACGACTTAGAGGCATA 59.318 52.381 0.00 0.00 0.00 3.14
412 413 0.461961 GAGGCACGACTTAGAGGCAT 59.538 55.000 0.00 0.00 0.00 4.40
413 414 1.890894 GAGGCACGACTTAGAGGCA 59.109 57.895 0.00 0.00 0.00 4.75
414 415 1.226717 CGAGGCACGACTTAGAGGC 60.227 63.158 0.00 0.00 45.77 4.70
415 416 2.478989 TCGAGGCACGACTTAGAGG 58.521 57.895 2.07 0.00 46.45 3.69
425 426 3.916392 CTCCCACGTGTCGAGGCAC 62.916 68.421 15.65 0.00 36.35 5.01
426 427 3.680786 CTCCCACGTGTCGAGGCA 61.681 66.667 15.65 0.00 36.35 4.75
427 428 1.381928 TATCTCCCACGTGTCGAGGC 61.382 60.000 22.62 0.00 36.35 4.70
428 429 1.319541 ATATCTCCCACGTGTCGAGG 58.680 55.000 22.62 14.20 37.35 4.63
429 430 3.139850 ACTATATCTCCCACGTGTCGAG 58.860 50.000 15.65 17.66 0.00 4.04
430 431 3.136763 GACTATATCTCCCACGTGTCGA 58.863 50.000 15.65 8.55 0.00 4.20
431 432 2.096367 CGACTATATCTCCCACGTGTCG 60.096 54.545 15.65 9.03 39.61 4.35
432 433 2.350580 GCGACTATATCTCCCACGTGTC 60.351 54.545 15.65 0.00 0.00 3.67
433 434 1.607628 GCGACTATATCTCCCACGTGT 59.392 52.381 15.65 0.00 0.00 4.49
434 435 1.607148 TGCGACTATATCTCCCACGTG 59.393 52.381 9.08 9.08 0.00 4.49
435 436 1.977056 TGCGACTATATCTCCCACGT 58.023 50.000 0.00 0.00 0.00 4.49
436 437 2.476352 CGATGCGACTATATCTCCCACG 60.476 54.545 0.00 0.00 0.00 4.94
437 438 2.747989 TCGATGCGACTATATCTCCCAC 59.252 50.000 0.00 0.00 0.00 4.61
438 439 3.010420 CTCGATGCGACTATATCTCCCA 58.990 50.000 0.00 0.00 0.00 4.37
439 440 2.356382 CCTCGATGCGACTATATCTCCC 59.644 54.545 0.00 0.00 0.00 4.30
440 441 2.356382 CCCTCGATGCGACTATATCTCC 59.644 54.545 0.00 0.00 0.00 3.71
441 442 2.223386 GCCCTCGATGCGACTATATCTC 60.223 54.545 0.00 0.00 0.00 2.75
442 443 1.746220 GCCCTCGATGCGACTATATCT 59.254 52.381 0.00 0.00 0.00 1.98
443 444 2.196295 GCCCTCGATGCGACTATATC 57.804 55.000 0.00 0.00 0.00 1.63
452 453 1.017177 TTGTGTAACGCCCTCGATGC 61.017 55.000 0.00 0.00 42.39 3.91
453 454 0.999406 CTTGTGTAACGCCCTCGATG 59.001 55.000 0.00 0.00 42.39 3.84
454 455 0.108329 CCTTGTGTAACGCCCTCGAT 60.108 55.000 0.00 0.00 42.39 3.59
455 456 1.290955 CCTTGTGTAACGCCCTCGA 59.709 57.895 0.00 0.00 42.39 4.04
456 457 1.740296 CCCTTGTGTAACGCCCTCG 60.740 63.158 0.00 0.00 42.39 4.63
457 458 2.038837 GCCCTTGTGTAACGCCCTC 61.039 63.158 0.00 0.00 42.39 4.30
458 459 2.033602 GCCCTTGTGTAACGCCCT 59.966 61.111 0.00 0.00 42.39 5.19
459 460 3.060000 GGCCCTTGTGTAACGCCC 61.060 66.667 0.00 0.00 42.39 6.13
460 461 3.060000 GGGCCCTTGTGTAACGCC 61.060 66.667 17.04 0.00 42.39 5.68
461 462 3.060000 GGGGCCCTTGTGTAACGC 61.060 66.667 24.38 0.00 42.39 4.84
462 463 2.360726 GGGGGCCCTTGTGTAACG 60.361 66.667 24.38 0.00 42.39 3.18
463 464 3.177291 AGGGGGCCCTTGTGTAAC 58.823 61.111 24.38 2.24 45.70 2.50
509 510 2.168326 TCGAGCAGTTCTTCAATGCA 57.832 45.000 0.00 0.00 42.45 3.96
550 551 0.953471 CTCCCGGACAATGCGAAACA 60.953 55.000 0.73 0.00 30.86 2.83
575 576 2.203788 TCCTTCGGTCCCAGCAGT 60.204 61.111 0.00 0.00 0.00 4.40
606 607 1.045350 ATGAGCGCTTCAGCCTCCTA 61.045 55.000 13.26 0.00 39.68 2.94
610 611 1.153409 CTGATGAGCGCTTCAGCCT 60.153 57.895 22.44 4.11 41.54 4.58
635 636 2.671682 GGGGTGAGTGGCTCCTTC 59.328 66.667 0.00 0.00 0.00 3.46
672 673 3.387947 CAGACGGGTTAGGCGGGT 61.388 66.667 0.00 0.00 0.00 5.28
724 725 1.255667 GGTAGCTCCGTCAGGTCCAA 61.256 60.000 0.00 0.00 39.05 3.53
778 784 2.290464 CACCCTCGGAGACTACTACAG 58.710 57.143 6.58 0.00 0.00 2.74
808 814 8.880991 AACTAGATCCTAACTCTAACTGACAA 57.119 34.615 0.00 0.00 0.00 3.18
995 1002 2.762327 CAGAGGTTTTCAATCATGGGGG 59.238 50.000 0.00 0.00 0.00 5.40
1036 1043 1.561542 AGGCAAGTTCAATCCTCGGAT 59.438 47.619 0.00 0.00 36.23 4.18
1052 1059 1.599047 GTAGCTCTCCTTGCAGGCA 59.401 57.895 0.00 0.00 34.61 4.75
1085 1092 1.528824 CCAAGGCGATGGGAGACAT 59.471 57.895 4.63 0.00 44.18 3.06
1089 1096 1.450531 GAATGCCAAGGCGATGGGAG 61.451 60.000 13.19 0.00 44.55 4.30
1147 1154 3.944015 CCTCCAACTTCTCTGGCTAAATG 59.056 47.826 0.00 0.00 33.63 2.32
1197 1204 2.706190 ACCTCTAGTGTCAAAAGCAGGT 59.294 45.455 0.00 0.00 0.00 4.00
1328 1335 2.341101 CCGTAGACCGTGGTCAGCT 61.341 63.158 20.51 3.33 46.76 4.24
1417 1429 1.831286 CCCCATTGATCAGCCAGGC 60.831 63.158 1.84 1.84 0.00 4.85
1684 1703 0.343372 AGGAGGAGAGGGCAATGGTA 59.657 55.000 0.00 0.00 0.00 3.25
1783 1802 1.028905 TTCCAAGCTTTGTTCACCGG 58.971 50.000 0.00 0.00 0.00 5.28
1981 2936 3.558931 TTTTCTCAGTGTGAGCTCCAA 57.441 42.857 12.15 0.00 43.95 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.