Multiple sequence alignment - TraesCS3B01G240700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G240700 chr3B 100.000 2867 0 0 1 2867 379678893 379676027 0.000000e+00 5295
1 TraesCS3B01G240700 chr3B 92.819 2270 90 30 642 2867 139621351 139623591 0.000000e+00 3221
2 TraesCS3B01G240700 chr3B 90.940 1159 51 35 911 2045 457636370 457637498 0.000000e+00 1509
3 TraesCS3B01G240700 chr3B 79.452 292 36 15 347 634 328472514 328472785 4.880000e-43 185
4 TraesCS3B01G240700 chr2B 91.823 2287 90 36 631 2867 571946213 571948452 0.000000e+00 3097
5 TraesCS3B01G240700 chr2B 92.183 1548 62 21 632 2158 470048949 470047440 0.000000e+00 2134
6 TraesCS3B01G240700 chr2B 88.086 1578 75 51 629 2155 629108930 629110445 0.000000e+00 1768
7 TraesCS3B01G240700 chr2B 91.045 804 51 11 2084 2867 470047570 470046768 0.000000e+00 1066
8 TraesCS3B01G240700 chr2B 92.318 755 32 8 2130 2867 26164979 26164234 0.000000e+00 1050
9 TraesCS3B01G240700 chr2B 78.082 292 40 15 347 634 320346423 320346694 2.290000e-36 163
10 TraesCS3B01G240700 chr7A 91.787 2289 91 42 629 2867 345261288 345263529 0.000000e+00 3096
11 TraesCS3B01G240700 chr7A 90.362 1546 71 38 633 2155 705281555 705283045 0.000000e+00 1958
12 TraesCS3B01G240700 chr7A 90.277 1553 70 43 633 2160 556141847 556140351 0.000000e+00 1956
13 TraesCS3B01G240700 chr1B 91.816 2285 88 40 633 2867 322392626 322394861 0.000000e+00 3092
14 TraesCS3B01G240700 chr1B 95.515 1271 40 6 632 1899 663659482 663658226 0.000000e+00 2015
15 TraesCS3B01G240700 chr1B 89.528 1547 64 39 633 2155 30529928 30531400 0.000000e+00 1869
16 TraesCS3B01G240700 chr1B 93.958 480 29 0 2388 2867 663657752 663657273 0.000000e+00 726
17 TraesCS3B01G240700 chr1B 91.199 534 18 8 1940 2464 663658225 663657712 0.000000e+00 699
18 TraesCS3B01G240700 chr3A 91.721 2295 86 40 629 2867 457924732 457926978 0.000000e+00 3090
19 TraesCS3B01G240700 chr6B 91.837 2205 81 39 633 2786 568189369 568191525 0.000000e+00 2983
20 TraesCS3B01G240700 chr6B 95.528 738 25 3 2130 2867 720540993 720541722 0.000000e+00 1173
21 TraesCS3B01G240700 chr6B 78.007 291 41 15 347 634 462296956 462297226 8.220000e-36 161
22 TraesCS3B01G240700 chr1A 91.167 2219 84 43 665 2836 113882217 113884370 0.000000e+00 2909
23 TraesCS3B01G240700 chr1A 86.719 640 55 18 23 634 77942282 77941645 0.000000e+00 684
24 TraesCS3B01G240700 chr2A 90.890 1877 85 36 632 2483 98570011 98571826 0.000000e+00 2440
25 TraesCS3B01G240700 chr2A 92.994 1513 59 25 627 2120 403615533 403614049 0.000000e+00 2163
26 TraesCS3B01G240700 chr2A 91.760 801 48 8 2084 2867 401614184 401613385 0.000000e+00 1098
27 TraesCS3B01G240700 chr2A 92.952 752 38 5 2130 2867 403614100 403613350 0.000000e+00 1081
28 TraesCS3B01G240700 chr2A 91.739 460 34 3 2411 2867 98571888 98572346 1.120000e-178 636
29 TraesCS3B01G240700 chr2A 93.299 388 25 1 247 634 529708093 529707707 3.200000e-159 571
30 TraesCS3B01G240700 chr5A 90.774 1550 65 38 629 2155 666315902 666317396 0.000000e+00 1999
31 TraesCS3B01G240700 chr5B 90.439 1548 70 38 631 2155 448586416 448587908 0.000000e+00 1967
32 TraesCS3B01G240700 chr5B 90.033 612 36 2 23 634 328280974 328280388 0.000000e+00 769
33 TraesCS3B01G240700 chr4A 89.463 1547 64 40 633 2155 3252928 3254399 0.000000e+00 1862
34 TraesCS3B01G240700 chr4A 93.932 412 25 0 220 631 567370120 567370531 8.720000e-175 623
35 TraesCS3B01G240700 chr4A 84.490 245 16 3 40 283 567369434 567369657 3.720000e-54 222
36 TraesCS3B01G240700 chr4B 91.489 752 40 10 2132 2867 134585244 134584501 0.000000e+00 1013
37 TraesCS3B01G240700 chr7B 91.870 369 30 0 266 634 722179507 722179139 1.520000e-142 516
38 TraesCS3B01G240700 chr6D 89.948 388 38 1 247 634 17025647 17026033 1.530000e-137 499


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G240700 chr3B 379676027 379678893 2866 True 5295.000000 5295 100.000000 1 2867 1 chr3B.!!$R1 2866
1 TraesCS3B01G240700 chr3B 139621351 139623591 2240 False 3221.000000 3221 92.819000 642 2867 1 chr3B.!!$F1 2225
2 TraesCS3B01G240700 chr3B 457636370 457637498 1128 False 1509.000000 1509 90.940000 911 2045 1 chr3B.!!$F3 1134
3 TraesCS3B01G240700 chr2B 571946213 571948452 2239 False 3097.000000 3097 91.823000 631 2867 1 chr2B.!!$F2 2236
4 TraesCS3B01G240700 chr2B 629108930 629110445 1515 False 1768.000000 1768 88.086000 629 2155 1 chr2B.!!$F3 1526
5 TraesCS3B01G240700 chr2B 470046768 470048949 2181 True 1600.000000 2134 91.614000 632 2867 2 chr2B.!!$R2 2235
6 TraesCS3B01G240700 chr2B 26164234 26164979 745 True 1050.000000 1050 92.318000 2130 2867 1 chr2B.!!$R1 737
7 TraesCS3B01G240700 chr7A 345261288 345263529 2241 False 3096.000000 3096 91.787000 629 2867 1 chr7A.!!$F1 2238
8 TraesCS3B01G240700 chr7A 705281555 705283045 1490 False 1958.000000 1958 90.362000 633 2155 1 chr7A.!!$F2 1522
9 TraesCS3B01G240700 chr7A 556140351 556141847 1496 True 1956.000000 1956 90.277000 633 2160 1 chr7A.!!$R1 1527
10 TraesCS3B01G240700 chr1B 322392626 322394861 2235 False 3092.000000 3092 91.816000 633 2867 1 chr1B.!!$F2 2234
11 TraesCS3B01G240700 chr1B 30529928 30531400 1472 False 1869.000000 1869 89.528000 633 2155 1 chr1B.!!$F1 1522
12 TraesCS3B01G240700 chr1B 663657273 663659482 2209 True 1146.666667 2015 93.557333 632 2867 3 chr1B.!!$R1 2235
13 TraesCS3B01G240700 chr3A 457924732 457926978 2246 False 3090.000000 3090 91.721000 629 2867 1 chr3A.!!$F1 2238
14 TraesCS3B01G240700 chr6B 568189369 568191525 2156 False 2983.000000 2983 91.837000 633 2786 1 chr6B.!!$F2 2153
15 TraesCS3B01G240700 chr6B 720540993 720541722 729 False 1173.000000 1173 95.528000 2130 2867 1 chr6B.!!$F3 737
16 TraesCS3B01G240700 chr1A 113882217 113884370 2153 False 2909.000000 2909 91.167000 665 2836 1 chr1A.!!$F1 2171
17 TraesCS3B01G240700 chr1A 77941645 77942282 637 True 684.000000 684 86.719000 23 634 1 chr1A.!!$R1 611
18 TraesCS3B01G240700 chr2A 403613350 403615533 2183 True 1622.000000 2163 92.973000 627 2867 2 chr2A.!!$R3 2240
19 TraesCS3B01G240700 chr2A 98570011 98572346 2335 False 1538.000000 2440 91.314500 632 2867 2 chr2A.!!$F1 2235
20 TraesCS3B01G240700 chr2A 401613385 401614184 799 True 1098.000000 1098 91.760000 2084 2867 1 chr2A.!!$R1 783
21 TraesCS3B01G240700 chr5A 666315902 666317396 1494 False 1999.000000 1999 90.774000 629 2155 1 chr5A.!!$F1 1526
22 TraesCS3B01G240700 chr5B 448586416 448587908 1492 False 1967.000000 1967 90.439000 631 2155 1 chr5B.!!$F1 1524
23 TraesCS3B01G240700 chr5B 328280388 328280974 586 True 769.000000 769 90.033000 23 634 1 chr5B.!!$R1 611
24 TraesCS3B01G240700 chr4A 3252928 3254399 1471 False 1862.000000 1862 89.463000 633 2155 1 chr4A.!!$F1 1522
25 TraesCS3B01G240700 chr4A 567369434 567370531 1097 False 422.500000 623 89.211000 40 631 2 chr4A.!!$F2 591
26 TraesCS3B01G240700 chr4B 134584501 134585244 743 True 1013.000000 1013 91.489000 2132 2867 1 chr4B.!!$R1 735

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
146 147 0.036164 CGATCCCACCCACAGAACAA 59.964 55.0 0.0 0.0 0.0 2.83 F
586 1085 0.107508 CACCGCCACTCATCTCCATT 60.108 55.0 0.0 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1106 1706 2.812542 CTTCGTCATGTCGGCACCGA 62.813 60.0 7.89 7.89 46.87 4.69 R
2578 3760 1.160137 CCTGCAACAGCTCAACTACC 58.840 55.0 0.00 0.00 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 9.890915 AGAGAGAGAATATTATTCTGTTACCCT 57.109 33.333 20.90 11.72 0.00 4.34
119 120 2.614229 GCCCAAAACAAAACACACCAGT 60.614 45.455 0.00 0.00 0.00 4.00
135 136 1.084370 CAGTTTCGAGCCGATCCCAC 61.084 60.000 0.00 0.00 35.23 4.61
136 137 1.814169 GTTTCGAGCCGATCCCACC 60.814 63.158 0.00 0.00 35.23 4.61
137 138 3.026431 TTTCGAGCCGATCCCACCC 62.026 63.158 0.00 0.00 35.23 4.61
138 139 4.770362 TCGAGCCGATCCCACCCA 62.770 66.667 0.00 0.00 0.00 4.51
139 140 4.530857 CGAGCCGATCCCACCCAC 62.531 72.222 0.00 0.00 0.00 4.61
140 141 3.399181 GAGCCGATCCCACCCACA 61.399 66.667 0.00 0.00 0.00 4.17
141 142 3.391665 GAGCCGATCCCACCCACAG 62.392 68.421 0.00 0.00 0.00 3.66
142 143 3.399181 GCCGATCCCACCCACAGA 61.399 66.667 0.00 0.00 0.00 3.41
143 144 2.966732 GCCGATCCCACCCACAGAA 61.967 63.158 0.00 0.00 0.00 3.02
144 145 1.078426 CCGATCCCACCCACAGAAC 60.078 63.158 0.00 0.00 0.00 3.01
145 146 1.676968 CGATCCCACCCACAGAACA 59.323 57.895 0.00 0.00 0.00 3.18
146 147 0.036164 CGATCCCACCCACAGAACAA 59.964 55.000 0.00 0.00 0.00 2.83
147 148 1.826385 GATCCCACCCACAGAACAAG 58.174 55.000 0.00 0.00 0.00 3.16
148 149 0.251341 ATCCCACCCACAGAACAAGC 60.251 55.000 0.00 0.00 0.00 4.01
149 150 1.903404 CCCACCCACAGAACAAGCC 60.903 63.158 0.00 0.00 0.00 4.35
150 151 1.151450 CCACCCACAGAACAAGCCT 59.849 57.895 0.00 0.00 0.00 4.58
151 152 0.468029 CCACCCACAGAACAAGCCTT 60.468 55.000 0.00 0.00 0.00 4.35
152 153 0.954452 CACCCACAGAACAAGCCTTC 59.046 55.000 0.00 0.00 0.00 3.46
153 154 0.178990 ACCCACAGAACAAGCCTTCC 60.179 55.000 0.00 0.00 0.00 3.46
154 155 0.111253 CCCACAGAACAAGCCTTCCT 59.889 55.000 0.00 0.00 0.00 3.36
303 802 3.155167 CCTACCTCCCCCGTGCTC 61.155 72.222 0.00 0.00 0.00 4.26
304 803 3.155167 CTACCTCCCCCGTGCTCC 61.155 72.222 0.00 0.00 0.00 4.70
327 826 4.150454 CCTCCCTCCCCTCGCTCT 62.150 72.222 0.00 0.00 0.00 4.09
328 827 2.837291 CTCCCTCCCCTCGCTCTG 60.837 72.222 0.00 0.00 0.00 3.35
329 828 4.465446 TCCCTCCCCTCGCTCTGG 62.465 72.222 0.00 0.00 0.00 3.86
340 839 4.847444 GCTCTGGCCGCCTTCCTC 62.847 72.222 11.61 0.00 0.00 3.71
341 840 4.168291 CTCTGGCCGCCTTCCTCC 62.168 72.222 11.61 0.00 0.00 4.30
349 848 4.475135 GCCTTCCTCCCCGTGCTC 62.475 72.222 0.00 0.00 0.00 4.26
350 849 3.787001 CCTTCCTCCCCGTGCTCC 61.787 72.222 0.00 0.00 0.00 4.70
351 850 4.148825 CTTCCTCCCCGTGCTCCG 62.149 72.222 0.00 0.00 0.00 4.63
364 863 4.840005 CTCCGGCCGCCTTTCTCC 62.840 72.222 22.85 0.00 0.00 3.71
369 868 4.840005 GCCGCCTTTCTCCCCGAG 62.840 72.222 0.00 0.00 0.00 4.63
370 869 3.075005 CCGCCTTTCTCCCCGAGA 61.075 66.667 0.00 0.00 36.86 4.04
371 870 2.435693 CCGCCTTTCTCCCCGAGAT 61.436 63.158 0.00 0.00 38.56 2.75
372 871 1.068250 CGCCTTTCTCCCCGAGATC 59.932 63.158 0.00 0.00 38.56 2.75
373 872 1.448069 GCCTTTCTCCCCGAGATCC 59.552 63.158 0.00 0.00 38.56 3.36
374 873 1.338136 GCCTTTCTCCCCGAGATCCA 61.338 60.000 0.00 0.00 38.56 3.41
375 874 1.204146 CCTTTCTCCCCGAGATCCAA 58.796 55.000 0.00 0.00 38.56 3.53
376 875 1.134371 CCTTTCTCCCCGAGATCCAAC 60.134 57.143 0.00 0.00 38.56 3.77
377 876 0.909623 TTTCTCCCCGAGATCCAACC 59.090 55.000 0.00 0.00 38.56 3.77
378 877 1.327690 TTCTCCCCGAGATCCAACCG 61.328 60.000 0.00 0.00 38.56 4.44
379 878 3.447025 CTCCCCGAGATCCAACCGC 62.447 68.421 0.00 0.00 0.00 5.68
380 879 4.547367 CCCCGAGATCCAACCGCC 62.547 72.222 0.00 0.00 0.00 6.13
381 880 3.470888 CCCGAGATCCAACCGCCT 61.471 66.667 0.00 0.00 0.00 5.52
382 881 2.584608 CCGAGATCCAACCGCCTT 59.415 61.111 0.00 0.00 0.00 4.35
383 882 1.521681 CCGAGATCCAACCGCCTTC 60.522 63.158 0.00 0.00 0.00 3.46
384 883 1.521681 CGAGATCCAACCGCCTTCC 60.522 63.158 0.00 0.00 0.00 3.46
385 884 1.153147 GAGATCCAACCGCCTTCCC 60.153 63.158 0.00 0.00 0.00 3.97
386 885 2.124278 GATCCAACCGCCTTCCCC 60.124 66.667 0.00 0.00 0.00 4.81
387 886 4.109675 ATCCAACCGCCTTCCCCG 62.110 66.667 0.00 0.00 0.00 5.73
459 958 4.803908 CTTTGGGCCGCCCTCCTC 62.804 72.222 28.97 2.60 45.70 3.71
498 997 3.470567 GTCGACGGCTGAAGCGTG 61.471 66.667 0.00 0.00 43.26 5.34
499 998 4.717629 TCGACGGCTGAAGCGTGG 62.718 66.667 0.00 0.00 43.26 4.94
501 1000 3.414700 GACGGCTGAAGCGTGGTG 61.415 66.667 0.00 0.00 43.26 4.17
502 1001 4.988598 ACGGCTGAAGCGTGGTGG 62.989 66.667 0.00 0.00 43.26 4.61
519 1018 4.980903 GCGGGTGCTTGCGTGTTG 62.981 66.667 0.00 0.00 38.39 3.33
520 1019 4.326766 CGGGTGCTTGCGTGTTGG 62.327 66.667 0.00 0.00 0.00 3.77
521 1020 3.977244 GGGTGCTTGCGTGTTGGG 61.977 66.667 0.00 0.00 0.00 4.12
522 1021 3.977244 GGTGCTTGCGTGTTGGGG 61.977 66.667 0.00 0.00 0.00 4.96
523 1022 3.216292 GTGCTTGCGTGTTGGGGT 61.216 61.111 0.00 0.00 0.00 4.95
524 1023 1.894756 GTGCTTGCGTGTTGGGGTA 60.895 57.895 0.00 0.00 0.00 3.69
525 1024 1.894756 TGCTTGCGTGTTGGGGTAC 60.895 57.895 0.00 0.00 0.00 3.34
526 1025 1.599797 GCTTGCGTGTTGGGGTACT 60.600 57.895 0.00 0.00 0.00 2.73
527 1026 1.852067 GCTTGCGTGTTGGGGTACTG 61.852 60.000 0.00 0.00 0.00 2.74
528 1027 1.228003 TTGCGTGTTGGGGTACTGG 60.228 57.895 0.00 0.00 0.00 4.00
529 1028 1.985460 TTGCGTGTTGGGGTACTGGT 61.985 55.000 0.00 0.00 0.00 4.00
530 1029 1.964373 GCGTGTTGGGGTACTGGTG 60.964 63.158 0.00 0.00 0.00 4.17
531 1030 1.448497 CGTGTTGGGGTACTGGTGT 59.552 57.895 0.00 0.00 0.00 4.16
532 1031 0.882927 CGTGTTGGGGTACTGGTGTG 60.883 60.000 0.00 0.00 0.00 3.82
533 1032 0.181824 GTGTTGGGGTACTGGTGTGT 59.818 55.000 0.00 0.00 0.00 3.72
534 1033 0.920438 TGTTGGGGTACTGGTGTGTT 59.080 50.000 0.00 0.00 0.00 3.32
535 1034 1.314730 GTTGGGGTACTGGTGTGTTG 58.685 55.000 0.00 0.00 0.00 3.33
536 1035 0.466555 TTGGGGTACTGGTGTGTTGC 60.467 55.000 0.00 0.00 0.00 4.17
537 1036 1.349542 TGGGGTACTGGTGTGTTGCT 61.350 55.000 0.00 0.00 0.00 3.91
538 1037 0.179001 GGGGTACTGGTGTGTTGCTT 60.179 55.000 0.00 0.00 0.00 3.91
539 1038 1.235724 GGGTACTGGTGTGTTGCTTC 58.764 55.000 0.00 0.00 0.00 3.86
540 1039 1.202770 GGGTACTGGTGTGTTGCTTCT 60.203 52.381 0.00 0.00 0.00 2.85
541 1040 2.143925 GGTACTGGTGTGTTGCTTCTC 58.856 52.381 0.00 0.00 0.00 2.87
542 1041 2.143925 GTACTGGTGTGTTGCTTCTCC 58.856 52.381 0.00 0.00 0.00 3.71
543 1042 0.532862 ACTGGTGTGTTGCTTCTCCG 60.533 55.000 0.00 0.00 0.00 4.63
544 1043 1.227823 TGGTGTGTTGCTTCTCCGG 60.228 57.895 0.00 0.00 0.00 5.14
545 1044 2.617274 GGTGTGTTGCTTCTCCGGC 61.617 63.158 0.00 0.00 0.00 6.13
546 1045 2.664851 TGTGTTGCTTCTCCGGCG 60.665 61.111 0.00 0.00 0.00 6.46
547 1046 2.357034 GTGTTGCTTCTCCGGCGA 60.357 61.111 9.30 0.00 0.00 5.54
548 1047 2.048222 TGTTGCTTCTCCGGCGAG 60.048 61.111 9.30 4.01 37.48 5.03
549 1048 2.815647 GTTGCTTCTCCGGCGAGG 60.816 66.667 9.30 0.00 42.97 4.63
551 1050 3.296709 TTGCTTCTCCGGCGAGGAC 62.297 63.158 9.30 0.00 45.98 3.85
552 1051 4.856607 GCTTCTCCGGCGAGGACG 62.857 72.222 9.30 4.82 45.98 4.79
562 1061 4.111016 CGAGGACGCCGTGCTACA 62.111 66.667 12.34 0.00 33.56 2.74
563 1062 2.506438 GAGGACGCCGTGCTACAC 60.506 66.667 12.34 0.00 33.56 2.90
564 1063 3.984200 GAGGACGCCGTGCTACACC 62.984 68.421 12.34 0.00 33.56 4.16
583 1082 2.512515 GCACCGCCACTCATCTCC 60.513 66.667 0.00 0.00 0.00 3.71
584 1083 2.981302 CACCGCCACTCATCTCCA 59.019 61.111 0.00 0.00 0.00 3.86
585 1084 1.524002 CACCGCCACTCATCTCCAT 59.476 57.895 0.00 0.00 0.00 3.41
586 1085 0.107508 CACCGCCACTCATCTCCATT 60.108 55.000 0.00 0.00 0.00 3.16
587 1086 0.620556 ACCGCCACTCATCTCCATTT 59.379 50.000 0.00 0.00 0.00 2.32
588 1087 1.004745 ACCGCCACTCATCTCCATTTT 59.995 47.619 0.00 0.00 0.00 1.82
589 1088 1.672881 CCGCCACTCATCTCCATTTTC 59.327 52.381 0.00 0.00 0.00 2.29
590 1089 2.636830 CGCCACTCATCTCCATTTTCT 58.363 47.619 0.00 0.00 0.00 2.52
591 1090 2.611292 CGCCACTCATCTCCATTTTCTC 59.389 50.000 0.00 0.00 0.00 2.87
592 1091 3.681034 CGCCACTCATCTCCATTTTCTCT 60.681 47.826 0.00 0.00 0.00 3.10
593 1092 3.626670 GCCACTCATCTCCATTTTCTCTG 59.373 47.826 0.00 0.00 0.00 3.35
594 1093 4.197750 CCACTCATCTCCATTTTCTCTGG 58.802 47.826 0.00 0.00 34.93 3.86
595 1094 4.324099 CCACTCATCTCCATTTTCTCTGGT 60.324 45.833 0.00 0.00 35.19 4.00
596 1095 5.104776 CCACTCATCTCCATTTTCTCTGGTA 60.105 44.000 0.00 0.00 35.19 3.25
597 1096 6.409005 CCACTCATCTCCATTTTCTCTGGTAT 60.409 42.308 0.00 0.00 35.19 2.73
598 1097 7.202038 CCACTCATCTCCATTTTCTCTGGTATA 60.202 40.741 0.00 0.00 35.19 1.47
599 1098 8.373981 CACTCATCTCCATTTTCTCTGGTATAT 58.626 37.037 0.00 0.00 35.19 0.86
600 1099 8.943085 ACTCATCTCCATTTTCTCTGGTATATT 58.057 33.333 0.00 0.00 35.19 1.28
601 1100 9.790344 CTCATCTCCATTTTCTCTGGTATATTT 57.210 33.333 0.00 0.00 35.19 1.40
602 1101 9.784531 TCATCTCCATTTTCTCTGGTATATTTC 57.215 33.333 0.00 0.00 35.19 2.17
603 1102 9.790344 CATCTCCATTTTCTCTGGTATATTTCT 57.210 33.333 0.00 0.00 35.19 2.52
604 1103 9.790344 ATCTCCATTTTCTCTGGTATATTTCTG 57.210 33.333 0.00 0.00 35.19 3.02
605 1104 8.772250 TCTCCATTTTCTCTGGTATATTTCTGT 58.228 33.333 0.00 0.00 35.19 3.41
608 1107 9.838339 CCATTTTCTCTGGTATATTTCTGTAGT 57.162 33.333 0.00 0.00 0.00 2.73
621 1120 8.934507 ATATTTCTGTAGTAGTTCTTCAGTGC 57.065 34.615 3.86 0.00 40.73 4.40
622 1121 4.421033 TCTGTAGTAGTTCTTCAGTGCG 57.579 45.455 3.86 0.00 40.73 5.34
623 1122 2.917971 CTGTAGTAGTTCTTCAGTGCGC 59.082 50.000 0.00 0.00 36.99 6.09
624 1123 2.295070 TGTAGTAGTTCTTCAGTGCGCA 59.705 45.455 5.66 5.66 0.00 6.09
625 1124 1.784525 AGTAGTTCTTCAGTGCGCAC 58.215 50.000 32.79 32.79 0.00 5.34
663 1162 5.198207 ACCCCTATTGGTACATAAACTTGC 58.802 41.667 0.00 0.00 39.30 4.01
753 1252 8.194104 TGCTGTAACAAATTCATACAAAACAGT 58.806 29.630 0.00 0.00 34.54 3.55
904 1447 1.003573 CCTAGCTCCTCCCCCTTGT 59.996 63.158 0.00 0.00 0.00 3.16
1106 1706 1.406069 GCTCAATGGATGTGACCTCGT 60.406 52.381 0.00 0.00 0.00 4.18
1408 2118 1.202989 TGCCACTTATTGAACCCTGCA 60.203 47.619 0.00 0.00 0.00 4.41
1579 2292 9.265901 TGAACAAATTGGTATTATGTGTTTTGG 57.734 29.630 0.00 0.00 27.74 3.28
1708 2483 6.403866 AATTTGTGTTTGACAAGGATGCTA 57.596 33.333 0.00 0.00 45.43 3.49
1722 2497 7.290061 ACAAGGATGCTAAAATTATGAGGCTA 58.710 34.615 0.00 0.00 0.00 3.93
1752 2527 3.897657 AGGAAGGCCATGATCATGAAT 57.102 42.857 32.71 17.05 41.20 2.57
1827 2602 0.681175 TCTGCTGCTCTGCACTGTTA 59.319 50.000 0.00 0.00 38.12 2.41
2020 2802 3.924686 CAGTGGCTTGAAATGAAATCAGC 59.075 43.478 0.00 0.00 0.00 4.26
2039 2821 2.076863 GCGGCTTGTACTCATTTCTGT 58.923 47.619 0.00 0.00 0.00 3.41
2040 2822 2.484264 GCGGCTTGTACTCATTTCTGTT 59.516 45.455 0.00 0.00 0.00 3.16
2041 2823 3.058224 GCGGCTTGTACTCATTTCTGTTT 60.058 43.478 0.00 0.00 0.00 2.83
2042 2824 4.153475 GCGGCTTGTACTCATTTCTGTTTA 59.847 41.667 0.00 0.00 0.00 2.01
2043 2825 5.618561 CGGCTTGTACTCATTTCTGTTTAC 58.381 41.667 0.00 0.00 0.00 2.01
2044 2826 5.408604 CGGCTTGTACTCATTTCTGTTTACT 59.591 40.000 0.00 0.00 0.00 2.24
2045 2827 6.401153 CGGCTTGTACTCATTTCTGTTTACTC 60.401 42.308 0.00 0.00 0.00 2.59
2046 2828 6.651225 GGCTTGTACTCATTTCTGTTTACTCT 59.349 38.462 0.00 0.00 0.00 3.24
2047 2829 7.817962 GGCTTGTACTCATTTCTGTTTACTCTA 59.182 37.037 0.00 0.00 0.00 2.43
2048 2830 8.648968 GCTTGTACTCATTTCTGTTTACTCTAC 58.351 37.037 0.00 0.00 0.00 2.59
2049 2831 9.915629 CTTGTACTCATTTCTGTTTACTCTACT 57.084 33.333 0.00 0.00 0.00 2.57
2050 2832 9.692749 TTGTACTCATTTCTGTTTACTCTACTG 57.307 33.333 0.00 0.00 0.00 2.74
2051 2833 8.857098 TGTACTCATTTCTGTTTACTCTACTGT 58.143 33.333 0.00 0.00 0.00 3.55
2052 2834 9.130312 GTACTCATTTCTGTTTACTCTACTGTG 57.870 37.037 0.00 0.00 0.00 3.66
2053 2835 7.155328 ACTCATTTCTGTTTACTCTACTGTGG 58.845 38.462 0.00 0.00 0.00 4.17
2054 2836 5.932303 TCATTTCTGTTTACTCTACTGTGGC 59.068 40.000 0.00 0.00 0.00 5.01
2055 2837 5.546621 TTTCTGTTTACTCTACTGTGGCT 57.453 39.130 0.00 0.00 0.00 4.75
2110 3014 6.804677 ACATGAAATCAGTTGCTTGTTTACA 58.195 32.000 0.00 0.00 0.00 2.41
2247 3203 7.360575 AGCAAAATTCAGATCAAGCAAAATC 57.639 32.000 0.00 0.00 0.00 2.17
2510 3671 4.508461 TCAACATGGACTGCTCAAAATG 57.492 40.909 0.00 0.00 0.00 2.32
2578 3760 2.071540 TGCATCTTCACTGCTTCTTCG 58.928 47.619 0.00 0.00 40.34 3.79
2581 3763 3.849911 CATCTTCACTGCTTCTTCGGTA 58.150 45.455 0.00 0.00 0.00 4.02
2638 3820 2.628178 TCTTCACCTCTTTCTTCAGCGA 59.372 45.455 0.00 0.00 0.00 4.93
2655 3837 1.398578 GCGACGCCTTCTTCTTGTTTC 60.399 52.381 9.14 0.00 0.00 2.78
2680 3862 2.834549 CTGGCTCCTTCACCTCTTCTTA 59.165 50.000 0.00 0.00 0.00 2.10
2711 3893 0.115152 TCACCTCTTCTGGCAGGAGA 59.885 55.000 23.83 23.83 33.52 3.71
2714 3896 1.273495 ACCTCTTCTGGCAGGAGATCA 60.273 52.381 25.39 4.18 33.52 2.92
2774 3956 4.003788 CCCTCAACGGCGACCAGT 62.004 66.667 16.62 0.00 0.00 4.00
2845 4027 2.230025 CAGTCTCTGTCAGGTCATCGTT 59.770 50.000 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 9.890915 AGGGTAACAGAATAATATTCTCTCTCT 57.109 33.333 12.24 6.28 39.74 3.10
18 19 9.440761 ACAGGGTAACAGAATAATATTCTCTCT 57.559 33.333 12.24 4.58 39.74 3.10
19 20 9.482627 CACAGGGTAACAGAATAATATTCTCTC 57.517 37.037 12.24 2.41 39.74 3.20
20 21 7.934120 GCACAGGGTAACAGAATAATATTCTCT 59.066 37.037 12.24 6.06 39.74 3.10
21 22 7.173390 GGCACAGGGTAACAGAATAATATTCTC 59.827 40.741 12.24 2.32 39.74 2.87
42 43 0.468226 CGGCTTCTATAAGGGGCACA 59.532 55.000 0.00 0.00 32.98 4.57
119 120 2.582436 GGTGGGATCGGCTCGAAA 59.418 61.111 1.44 0.00 39.99 3.46
135 136 0.111253 AGGAAGGCTTGTTCTGTGGG 59.889 55.000 3.46 0.00 0.00 4.61
136 137 1.528129 GAGGAAGGCTTGTTCTGTGG 58.472 55.000 3.46 0.00 0.00 4.17
137 138 1.202806 TGGAGGAAGGCTTGTTCTGTG 60.203 52.381 3.46 0.00 0.00 3.66
138 139 1.140312 TGGAGGAAGGCTTGTTCTGT 58.860 50.000 3.46 0.00 0.00 3.41
139 140 2.276732 TTGGAGGAAGGCTTGTTCTG 57.723 50.000 3.46 0.00 0.00 3.02
140 141 3.312736 TTTTGGAGGAAGGCTTGTTCT 57.687 42.857 3.46 0.00 0.00 3.01
286 785 3.155167 GAGCACGGGGGAGGTAGG 61.155 72.222 0.00 0.00 0.00 3.18
287 786 3.155167 GGAGCACGGGGGAGGTAG 61.155 72.222 0.00 0.00 0.00 3.18
310 809 4.150454 AGAGCGAGGGGAGGGAGG 62.150 72.222 0.00 0.00 0.00 4.30
311 810 2.837291 CAGAGCGAGGGGAGGGAG 60.837 72.222 0.00 0.00 0.00 4.30
312 811 4.465446 CCAGAGCGAGGGGAGGGA 62.465 72.222 0.00 0.00 0.00 4.20
323 822 4.847444 GAGGAAGGCGGCCAGAGC 62.847 72.222 23.09 6.83 38.76 4.09
324 823 4.168291 GGAGGAAGGCGGCCAGAG 62.168 72.222 23.09 0.00 0.00 3.35
332 831 4.475135 GAGCACGGGGAGGAAGGC 62.475 72.222 0.00 0.00 0.00 4.35
333 832 3.787001 GGAGCACGGGGAGGAAGG 61.787 72.222 0.00 0.00 0.00 3.46
334 833 4.148825 CGGAGCACGGGGAGGAAG 62.149 72.222 0.00 0.00 39.42 3.46
347 846 4.840005 GGAGAAAGGCGGCCGGAG 62.840 72.222 29.38 0.00 0.00 4.63
352 851 4.840005 CTCGGGGAGAAAGGCGGC 62.840 72.222 0.00 0.00 0.00 6.53
353 852 2.370647 GATCTCGGGGAGAAAGGCGG 62.371 65.000 0.00 0.00 42.27 6.13
354 853 1.068250 GATCTCGGGGAGAAAGGCG 59.932 63.158 0.00 0.00 42.27 5.52
355 854 1.338136 TGGATCTCGGGGAGAAAGGC 61.338 60.000 0.00 0.00 42.27 4.35
356 855 1.134371 GTTGGATCTCGGGGAGAAAGG 60.134 57.143 0.00 0.00 42.27 3.11
357 856 1.134371 GGTTGGATCTCGGGGAGAAAG 60.134 57.143 0.00 0.00 42.27 2.62
358 857 0.909623 GGTTGGATCTCGGGGAGAAA 59.090 55.000 0.00 0.00 42.27 2.52
359 858 1.327690 CGGTTGGATCTCGGGGAGAA 61.328 60.000 0.00 0.00 42.27 2.87
360 859 1.756950 CGGTTGGATCTCGGGGAGA 60.757 63.158 0.00 0.00 43.20 3.71
361 860 2.815308 CGGTTGGATCTCGGGGAG 59.185 66.667 0.00 0.00 0.00 4.30
362 861 3.467226 GCGGTTGGATCTCGGGGA 61.467 66.667 0.00 0.00 0.00 4.81
363 862 4.547367 GGCGGTTGGATCTCGGGG 62.547 72.222 0.00 0.00 0.00 5.73
364 863 2.925162 GAAGGCGGTTGGATCTCGGG 62.925 65.000 0.00 0.00 0.00 5.14
365 864 1.521681 GAAGGCGGTTGGATCTCGG 60.522 63.158 0.00 0.00 0.00 4.63
366 865 1.521681 GGAAGGCGGTTGGATCTCG 60.522 63.158 0.00 0.00 0.00 4.04
367 866 1.153147 GGGAAGGCGGTTGGATCTC 60.153 63.158 0.00 0.00 0.00 2.75
368 867 2.680370 GGGGAAGGCGGTTGGATCT 61.680 63.158 0.00 0.00 0.00 2.75
369 868 2.124278 GGGGAAGGCGGTTGGATC 60.124 66.667 0.00 0.00 0.00 3.36
370 869 4.109675 CGGGGAAGGCGGTTGGAT 62.110 66.667 0.00 0.00 0.00 3.41
481 980 3.470567 CACGCTTCAGCCGTCGAC 61.471 66.667 5.18 5.18 37.91 4.20
482 981 4.717629 CCACGCTTCAGCCGTCGA 62.718 66.667 0.00 0.00 37.91 4.20
484 983 3.414700 CACCACGCTTCAGCCGTC 61.415 66.667 0.00 0.00 37.91 4.79
485 984 4.988598 CCACCACGCTTCAGCCGT 62.989 66.667 0.00 0.00 37.91 5.68
502 1001 4.980903 CAACACGCAAGCACCCGC 62.981 66.667 0.00 0.00 45.62 6.13
503 1002 4.326766 CCAACACGCAAGCACCCG 62.327 66.667 0.00 0.00 45.62 5.28
504 1003 3.977244 CCCAACACGCAAGCACCC 61.977 66.667 0.00 0.00 45.62 4.61
505 1004 3.977244 CCCCAACACGCAAGCACC 61.977 66.667 0.00 0.00 45.62 5.01
506 1005 1.894756 TACCCCAACACGCAAGCAC 60.895 57.895 0.00 0.00 45.62 4.40
507 1006 1.894756 GTACCCCAACACGCAAGCA 60.895 57.895 0.00 0.00 45.62 3.91
508 1007 1.599797 AGTACCCCAACACGCAAGC 60.600 57.895 0.00 0.00 45.62 4.01
510 1009 1.228003 CCAGTACCCCAACACGCAA 60.228 57.895 0.00 0.00 0.00 4.85
511 1010 2.428187 CCAGTACCCCAACACGCA 59.572 61.111 0.00 0.00 0.00 5.24
512 1011 1.964373 CACCAGTACCCCAACACGC 60.964 63.158 0.00 0.00 0.00 5.34
513 1012 0.882927 CACACCAGTACCCCAACACG 60.883 60.000 0.00 0.00 0.00 4.49
514 1013 0.181824 ACACACCAGTACCCCAACAC 59.818 55.000 0.00 0.00 0.00 3.32
515 1014 0.920438 AACACACCAGTACCCCAACA 59.080 50.000 0.00 0.00 0.00 3.33
516 1015 1.314730 CAACACACCAGTACCCCAAC 58.685 55.000 0.00 0.00 0.00 3.77
517 1016 0.466555 GCAACACACCAGTACCCCAA 60.467 55.000 0.00 0.00 0.00 4.12
518 1017 1.149627 GCAACACACCAGTACCCCA 59.850 57.895 0.00 0.00 0.00 4.96
519 1018 0.179001 AAGCAACACACCAGTACCCC 60.179 55.000 0.00 0.00 0.00 4.95
520 1019 1.202770 AGAAGCAACACACCAGTACCC 60.203 52.381 0.00 0.00 0.00 3.69
521 1020 2.143925 GAGAAGCAACACACCAGTACC 58.856 52.381 0.00 0.00 0.00 3.34
522 1021 2.143925 GGAGAAGCAACACACCAGTAC 58.856 52.381 0.00 0.00 0.00 2.73
523 1022 1.270094 CGGAGAAGCAACACACCAGTA 60.270 52.381 0.00 0.00 0.00 2.74
524 1023 0.532862 CGGAGAAGCAACACACCAGT 60.533 55.000 0.00 0.00 0.00 4.00
525 1024 1.230635 CCGGAGAAGCAACACACCAG 61.231 60.000 0.00 0.00 0.00 4.00
526 1025 1.227823 CCGGAGAAGCAACACACCA 60.228 57.895 0.00 0.00 0.00 4.17
527 1026 2.617274 GCCGGAGAAGCAACACACC 61.617 63.158 5.05 0.00 0.00 4.16
528 1027 2.946762 GCCGGAGAAGCAACACAC 59.053 61.111 5.05 0.00 0.00 3.82
529 1028 2.664851 CGCCGGAGAAGCAACACA 60.665 61.111 5.05 0.00 0.00 3.72
530 1029 2.357034 TCGCCGGAGAAGCAACAC 60.357 61.111 5.05 0.00 0.00 3.32
531 1030 2.048222 CTCGCCGGAGAAGCAACA 60.048 61.111 9.83 0.00 43.27 3.33
532 1031 2.815647 CCTCGCCGGAGAAGCAAC 60.816 66.667 9.83 0.00 43.27 4.17
533 1032 2.994995 TCCTCGCCGGAGAAGCAA 60.995 61.111 9.83 0.00 43.27 3.91
534 1033 3.760035 GTCCTCGCCGGAGAAGCA 61.760 66.667 9.83 0.00 44.20 3.91
535 1034 4.856607 CGTCCTCGCCGGAGAAGC 62.857 72.222 9.83 1.38 44.20 3.86
545 1044 4.111016 TGTAGCACGGCGTCCTCG 62.111 66.667 8.82 0.00 40.37 4.63
546 1045 2.506438 GTGTAGCACGGCGTCCTC 60.506 66.667 8.82 1.93 0.00 3.71
547 1046 4.065281 GGTGTAGCACGGCGTCCT 62.065 66.667 10.85 9.92 34.83 3.85
566 1065 2.512515 GGAGATGAGTGGCGGTGC 60.513 66.667 0.00 0.00 0.00 5.01
567 1066 0.107508 AATGGAGATGAGTGGCGGTG 60.108 55.000 0.00 0.00 0.00 4.94
568 1067 0.620556 AAATGGAGATGAGTGGCGGT 59.379 50.000 0.00 0.00 0.00 5.68
569 1068 1.672881 GAAAATGGAGATGAGTGGCGG 59.327 52.381 0.00 0.00 0.00 6.13
570 1069 2.611292 GAGAAAATGGAGATGAGTGGCG 59.389 50.000 0.00 0.00 0.00 5.69
571 1070 3.626670 CAGAGAAAATGGAGATGAGTGGC 59.373 47.826 0.00 0.00 0.00 5.01
572 1071 4.197750 CCAGAGAAAATGGAGATGAGTGG 58.802 47.826 0.00 0.00 40.51 4.00
573 1072 4.841422 ACCAGAGAAAATGGAGATGAGTG 58.159 43.478 0.00 0.00 40.51 3.51
574 1073 6.821616 ATACCAGAGAAAATGGAGATGAGT 57.178 37.500 0.00 0.00 40.51 3.41
575 1074 9.790344 AAATATACCAGAGAAAATGGAGATGAG 57.210 33.333 0.00 0.00 40.51 2.90
576 1075 9.784531 GAAATATACCAGAGAAAATGGAGATGA 57.215 33.333 0.00 0.00 40.51 2.92
577 1076 9.790344 AGAAATATACCAGAGAAAATGGAGATG 57.210 33.333 0.00 0.00 40.51 2.90
578 1077 9.790344 CAGAAATATACCAGAGAAAATGGAGAT 57.210 33.333 0.00 0.00 40.51 2.75
579 1078 8.772250 ACAGAAATATACCAGAGAAAATGGAGA 58.228 33.333 0.00 0.00 40.51 3.71
580 1079 8.970859 ACAGAAATATACCAGAGAAAATGGAG 57.029 34.615 0.00 0.00 40.51 3.86
582 1081 9.838339 ACTACAGAAATATACCAGAGAAAATGG 57.162 33.333 0.00 0.00 43.87 3.16
596 1095 7.702772 CGCACTGAAGAACTACTACAGAAATAT 59.297 37.037 0.00 0.00 33.53 1.28
597 1096 7.027760 CGCACTGAAGAACTACTACAGAAATA 58.972 38.462 0.00 0.00 33.53 1.40
598 1097 5.864474 CGCACTGAAGAACTACTACAGAAAT 59.136 40.000 0.00 0.00 33.53 2.17
599 1098 5.220381 CGCACTGAAGAACTACTACAGAAA 58.780 41.667 0.00 0.00 33.53 2.52
600 1099 4.795268 CGCACTGAAGAACTACTACAGAA 58.205 43.478 0.00 0.00 33.53 3.02
601 1100 3.366070 GCGCACTGAAGAACTACTACAGA 60.366 47.826 0.30 0.00 33.53 3.41
602 1101 2.917971 GCGCACTGAAGAACTACTACAG 59.082 50.000 0.30 0.00 35.14 2.74
603 1102 2.295070 TGCGCACTGAAGAACTACTACA 59.705 45.455 5.66 0.00 0.00 2.74
604 1103 2.662156 GTGCGCACTGAAGAACTACTAC 59.338 50.000 32.55 0.00 0.00 2.73
605 1104 2.295070 TGTGCGCACTGAAGAACTACTA 59.705 45.455 37.59 12.99 0.00 1.82
606 1105 1.068588 TGTGCGCACTGAAGAACTACT 59.931 47.619 37.59 0.00 0.00 2.57
607 1106 1.497991 TGTGCGCACTGAAGAACTAC 58.502 50.000 37.59 10.61 0.00 2.73
608 1107 2.232756 TTGTGCGCACTGAAGAACTA 57.767 45.000 37.59 14.52 0.00 2.24
609 1108 1.378531 TTTGTGCGCACTGAAGAACT 58.621 45.000 37.59 0.00 0.00 3.01
610 1109 2.187351 TTTTGTGCGCACTGAAGAAC 57.813 45.000 37.59 12.69 0.00 3.01
611 1110 2.929531 TTTTTGTGCGCACTGAAGAA 57.070 40.000 37.59 23.52 0.00 2.52
643 1142 5.299279 CCCTGCAAGTTTATGTACCAATAGG 59.701 44.000 0.00 0.00 42.21 2.57
663 1162 0.184933 TGAAACTGTTCCCACCCCTG 59.815 55.000 0.00 0.00 32.28 4.45
753 1252 1.945522 CCAAATGTCGCGTCCACAA 59.054 52.632 5.77 0.00 0.00 3.33
815 1317 0.409484 ATACAAAGTGCAAGGGGGCT 59.591 50.000 0.00 0.00 34.04 5.19
849 1354 2.780094 CGATGCAGAGAGGGCGAGT 61.780 63.158 0.00 0.00 0.00 4.18
938 1526 4.824515 AGAGGGCGACGGAGAGGG 62.825 72.222 0.00 0.00 0.00 4.30
939 1527 3.213402 GAGAGGGCGACGGAGAGG 61.213 72.222 0.00 0.00 0.00 3.69
940 1528 3.578272 CGAGAGGGCGACGGAGAG 61.578 72.222 0.00 0.00 0.00 3.20
1106 1706 2.812542 CTTCGTCATGTCGGCACCGA 62.813 60.000 7.89 7.89 46.87 4.69
1499 2209 5.529800 ACAACTACAGATAAACAACACACCC 59.470 40.000 0.00 0.00 0.00 4.61
1579 2292 7.332926 CAGATAAGCACATGTATCATAACCCTC 59.667 40.741 0.00 0.00 0.00 4.30
1708 2483 8.753133 CCTTTCTTCCTTTAGCCTCATAATTTT 58.247 33.333 0.00 0.00 0.00 1.82
1722 2497 3.168292 CATGGCCTTCCTTTCTTCCTTT 58.832 45.455 3.32 0.00 0.00 3.11
1752 2527 5.420421 CCTAGTTCTGATCTCCTTCTTGTGA 59.580 44.000 0.00 0.00 0.00 3.58
1827 2602 5.932619 TCACTAGTGCTACAACACCATAT 57.067 39.130 18.45 0.00 41.67 1.78
2020 2802 4.749245 AAACAGAAATGAGTACAAGCCG 57.251 40.909 0.00 0.00 0.00 5.52
2039 2821 6.823497 AGTAAACAAGCCACAGTAGAGTAAA 58.177 36.000 0.00 0.00 0.00 2.01
2040 2822 6.415206 AGTAAACAAGCCACAGTAGAGTAA 57.585 37.500 0.00 0.00 0.00 2.24
2041 2823 6.415206 AAGTAAACAAGCCACAGTAGAGTA 57.585 37.500 0.00 0.00 0.00 2.59
2042 2824 4.957684 AGTAAACAAGCCACAGTAGAGT 57.042 40.909 0.00 0.00 0.00 3.24
2043 2825 6.929606 AGTTAAGTAAACAAGCCACAGTAGAG 59.070 38.462 0.00 0.00 40.83 2.43
2044 2826 6.704493 CAGTTAAGTAAACAAGCCACAGTAGA 59.296 38.462 0.00 0.00 40.83 2.59
2045 2827 6.704493 TCAGTTAAGTAAACAAGCCACAGTAG 59.296 38.462 0.00 0.00 40.83 2.57
2046 2828 6.584488 TCAGTTAAGTAAACAAGCCACAGTA 58.416 36.000 0.00 0.00 40.83 2.74
2047 2829 5.433526 TCAGTTAAGTAAACAAGCCACAGT 58.566 37.500 0.00 0.00 40.83 3.55
2048 2830 6.371809 TTCAGTTAAGTAAACAAGCCACAG 57.628 37.500 0.00 0.00 40.83 3.66
2049 2831 6.761099 TTTCAGTTAAGTAAACAAGCCACA 57.239 33.333 0.00 0.00 40.83 4.17
2050 2832 8.642908 AATTTTCAGTTAAGTAAACAAGCCAC 57.357 30.769 0.00 0.00 40.83 5.01
2051 2833 8.691797 AGAATTTTCAGTTAAGTAAACAAGCCA 58.308 29.630 0.00 0.00 40.83 4.75
2052 2834 9.181805 GAGAATTTTCAGTTAAGTAAACAAGCC 57.818 33.333 0.00 0.00 40.83 4.35
2053 2835 9.952188 AGAGAATTTTCAGTTAAGTAAACAAGC 57.048 29.630 0.00 0.00 40.83 4.01
2156 3073 8.685838 ATTTCAGTTAAGTAAACAAGCCACTA 57.314 30.769 0.00 0.00 40.83 2.74
2247 3203 7.704472 TGAAATTTGCACTGTTAAGTTAACTGG 59.296 33.333 26.70 20.12 40.56 4.00
2578 3760 1.160137 CCTGCAACAGCTCAACTACC 58.840 55.000 0.00 0.00 0.00 3.18
2581 3763 2.256591 CGCCTGCAACAGCTCAACT 61.257 57.895 0.00 0.00 0.00 3.16
2638 3820 0.586802 GCGAAACAAGAAGAAGGCGT 59.413 50.000 0.00 0.00 0.00 5.68
2655 3837 2.125350 GGTGAAGGAGCCAGAGCG 60.125 66.667 0.00 0.00 46.67 5.03
2680 3862 4.823989 CAGAAGAGGTGAAGGTTGAACAAT 59.176 41.667 0.00 0.00 0.00 2.71
2711 3893 2.579201 CTCCTGCCGGACGTTGAT 59.421 61.111 5.05 0.00 34.92 2.57
2714 3896 4.070552 GAGCTCCTGCCGGACGTT 62.071 66.667 5.05 0.00 40.80 3.99
2845 4027 0.827925 CCCTGCGGACTATGCCTCTA 60.828 60.000 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.