Multiple sequence alignment - TraesCS3B01G239900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G239900 chr3B 100.000 4499 0 0 1 4499 378462830 378458332 0.000000e+00 8309
1 TraesCS3B01G239900 chr3B 99.220 769 6 0 3620 4388 732864833 732865601 0.000000e+00 1387
2 TraesCS3B01G239900 chr3B 97.775 764 17 0 3625 4388 698420564 698419801 0.000000e+00 1317
3 TraesCS3B01G239900 chr3B 97.392 767 17 1 3622 4388 20801480 20802243 0.000000e+00 1303
4 TraesCS3B01G239900 chr3D 97.820 2844 38 6 791 3621 284816052 284818884 0.000000e+00 4887
5 TraesCS3B01G239900 chr3D 96.125 542 19 2 54 594 284814827 284815367 0.000000e+00 883
6 TraesCS3B01G239900 chr3D 91.919 99 8 0 3053 3151 477910649 477910551 6.070000e-29 139
7 TraesCS3B01G239900 chr3D 94.286 70 1 3 1 68 556211865 556211933 2.210000e-18 104
8 TraesCS3B01G239900 chr3D 92.958 71 4 1 1 71 340089518 340089587 7.960000e-18 102
9 TraesCS3B01G239900 chr3A 94.737 1653 65 12 1977 3621 372195140 372196778 0.000000e+00 2551
10 TraesCS3B01G239900 chr3A 94.449 1207 41 15 754 1945 372193945 372195140 0.000000e+00 1834
11 TraesCS3B01G239900 chr3A 91.388 569 40 7 54 620 372193227 372193788 0.000000e+00 771
12 TraesCS3B01G239900 chr2B 97.900 762 16 0 3627 4388 189613569 189612808 0.000000e+00 1319
13 TraesCS3B01G239900 chr2B 97.115 104 2 1 593 696 546666376 546666274 1.660000e-39 174
14 TraesCS3B01G239900 chr4B 96.990 764 20 1 3625 4388 651969302 651968542 0.000000e+00 1280
15 TraesCS3B01G239900 chr4B 90.772 596 50 4 3628 4222 412775344 412775935 0.000000e+00 791
16 TraesCS3B01G239900 chr4B 97.115 104 2 1 593 696 542972656 542972554 1.660000e-39 174
17 TraesCS3B01G239900 chr4B 97.030 101 2 1 593 693 440872346 440872445 7.740000e-38 169
18 TraesCS3B01G239900 chr4B 97.030 101 2 1 593 693 565913886 565913985 7.740000e-38 169
19 TraesCS3B01G239900 chr4B 95.652 69 1 1 2 70 668048503 668048437 4.760000e-20 110
20 TraesCS3B01G239900 chr4D 91.500 600 49 2 3624 4222 378265132 378265730 0.000000e+00 824
21 TraesCS3B01G239900 chr4D 96.154 104 3 1 593 696 330800403 330800301 7.740000e-38 169
22 TraesCS3B01G239900 chr4A 91.376 603 47 5 3622 4222 59480124 59479525 0.000000e+00 821
23 TraesCS3B01G239900 chr1A 90.280 607 54 5 3619 4222 486944569 486945173 0.000000e+00 789
24 TraesCS3B01G239900 chr1A 90.909 110 10 0 3034 3143 352174090 352174199 1.010000e-31 148
25 TraesCS3B01G239900 chr1A 87.931 116 13 1 3036 3151 306866086 306865972 7.850000e-28 135
26 TraesCS3B01G239900 chr2D 98.020 101 1 1 593 693 41824892 41824991 1.660000e-39 174
27 TraesCS3B01G239900 chr1B 97.115 104 2 1 593 696 533258499 533258397 1.660000e-39 174
28 TraesCS3B01G239900 chr1B 97.030 101 2 1 593 693 157409099 157409198 7.740000e-38 169
29 TraesCS3B01G239900 chr1B 91.589 107 9 0 3037 3143 301273396 301273502 1.010000e-31 148
30 TraesCS3B01G239900 chr1D 96.154 104 3 1 593 696 208035285 208035183 7.740000e-38 169
31 TraesCS3B01G239900 chr1D 91.089 101 9 0 3043 3143 379139997 379139897 2.180000e-28 137
32 TraesCS3B01G239900 chr1D 91.781 73 5 1 1 72 266625965 266626037 2.860000e-17 100
33 TraesCS3B01G239900 chr7B 90.179 112 10 1 3035 3145 216938224 216938335 1.300000e-30 145
34 TraesCS3B01G239900 chr5B 90.099 101 10 0 3035 3135 501956952 501957052 1.020000e-26 132
35 TraesCS3B01G239900 chr2A 96.875 64 2 0 1 64 371308034 371307971 1.710000e-19 108
36 TraesCS3B01G239900 chr2A 89.873 79 7 1 1 78 83984391 83984469 2.860000e-17 100
37 TraesCS3B01G239900 chr6A 95.455 66 3 0 1 66 71460725 71460660 6.160000e-19 106
38 TraesCS3B01G239900 chr5D 96.825 63 2 0 1 63 556966299 556966361 6.160000e-19 106
39 TraesCS3B01G239900 chr5D 91.892 74 3 3 1 72 376171765 376171837 2.860000e-17 100


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G239900 chr3B 378458332 378462830 4498 True 8309.000000 8309 100.000000 1 4499 1 chr3B.!!$R1 4498
1 TraesCS3B01G239900 chr3B 732864833 732865601 768 False 1387.000000 1387 99.220000 3620 4388 1 chr3B.!!$F2 768
2 TraesCS3B01G239900 chr3B 698419801 698420564 763 True 1317.000000 1317 97.775000 3625 4388 1 chr3B.!!$R2 763
3 TraesCS3B01G239900 chr3B 20801480 20802243 763 False 1303.000000 1303 97.392000 3622 4388 1 chr3B.!!$F1 766
4 TraesCS3B01G239900 chr3D 284814827 284818884 4057 False 2885.000000 4887 96.972500 54 3621 2 chr3D.!!$F3 3567
5 TraesCS3B01G239900 chr3A 372193227 372196778 3551 False 1718.666667 2551 93.524667 54 3621 3 chr3A.!!$F1 3567
6 TraesCS3B01G239900 chr2B 189612808 189613569 761 True 1319.000000 1319 97.900000 3627 4388 1 chr2B.!!$R1 761
7 TraesCS3B01G239900 chr4B 651968542 651969302 760 True 1280.000000 1280 96.990000 3625 4388 1 chr4B.!!$R2 763
8 TraesCS3B01G239900 chr4B 412775344 412775935 591 False 791.000000 791 90.772000 3628 4222 1 chr4B.!!$F1 594
9 TraesCS3B01G239900 chr4D 378265132 378265730 598 False 824.000000 824 91.500000 3624 4222 1 chr4D.!!$F1 598
10 TraesCS3B01G239900 chr4A 59479525 59480124 599 True 821.000000 821 91.376000 3622 4222 1 chr4A.!!$R1 600
11 TraesCS3B01G239900 chr1A 486944569 486945173 604 False 789.000000 789 90.280000 3619 4222 1 chr1A.!!$F2 603

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
477 480 0.387878 CTAGCATCGACATCGGCCTC 60.388 60.0 0.00 0.0 40.29 4.70 F
888 1550 0.550914 TCCCCCGGAAGAATGAATGG 59.449 55.0 0.73 0.0 0.00 3.16 F
1728 2403 0.593128 CCAAGGAACTGAACAAGCCG 59.407 55.0 0.00 0.0 40.86 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1728 2403 0.322456 TACCCTGTGCATTGCTGGAC 60.322 55.000 10.49 0.27 43.48 4.02 R
2670 3345 4.409570 CGCTTCTCCATTTTCAGATTGTG 58.590 43.478 0.00 0.00 0.00 3.33 R
3505 4191 1.039856 AACGAGTTGCCTTGCCAAAT 58.960 45.000 0.00 0.00 0.00 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 7.839680 AACCATTTTATTATTGCCTCTAGGG 57.160 36.000 0.00 0.00 35.18 3.53
99 100 2.602267 TGTGACCGACGATGGGGT 60.602 61.111 0.00 0.00 39.83 4.95
100 101 1.304299 TGTGACCGACGATGGGGTA 60.304 57.895 0.00 0.00 36.46 3.69
117 118 0.388649 GTAGTGCTCGGACAGGTGTG 60.389 60.000 0.00 0.00 0.00 3.82
249 251 1.480545 TCACGATGACATAGTGTGGGG 59.519 52.381 22.90 3.30 37.22 4.96
298 300 2.571757 CGAGCCCACTGACGCTTA 59.428 61.111 0.00 0.00 34.84 3.09
477 480 0.387878 CTAGCATCGACATCGGCCTC 60.388 60.000 0.00 0.00 40.29 4.70
604 607 5.407407 TTTTGAGACATACTCCCTCTGTC 57.593 43.478 0.00 0.00 44.34 3.51
607 610 1.646447 AGACATACTCCCTCTGTCCCA 59.354 52.381 0.00 0.00 40.08 4.37
613 616 5.491078 ACATACTCCCTCTGTCCCAAAATAA 59.509 40.000 0.00 0.00 0.00 1.40
614 617 4.576330 ACTCCCTCTGTCCCAAAATAAG 57.424 45.455 0.00 0.00 0.00 1.73
620 623 4.938226 CCTCTGTCCCAAAATAAGTGTCTC 59.062 45.833 0.00 0.00 0.00 3.36
621 624 5.513094 CCTCTGTCCCAAAATAAGTGTCTCA 60.513 44.000 0.00 0.00 0.00 3.27
622 625 5.935945 TCTGTCCCAAAATAAGTGTCTCAA 58.064 37.500 0.00 0.00 0.00 3.02
623 626 6.361433 TCTGTCCCAAAATAAGTGTCTCAAA 58.639 36.000 0.00 0.00 0.00 2.69
624 627 7.004086 TCTGTCCCAAAATAAGTGTCTCAAAT 58.996 34.615 0.00 0.00 0.00 2.32
625 628 7.505585 TCTGTCCCAAAATAAGTGTCTCAAATT 59.494 33.333 0.00 0.00 0.00 1.82
626 629 8.017418 TGTCCCAAAATAAGTGTCTCAAATTT 57.983 30.769 0.00 0.00 0.00 1.82
627 630 7.925483 TGTCCCAAAATAAGTGTCTCAAATTTG 59.075 33.333 12.15 12.15 0.00 2.32
628 631 7.926018 GTCCCAAAATAAGTGTCTCAAATTTGT 59.074 33.333 17.47 0.00 0.00 2.83
629 632 9.137459 TCCCAAAATAAGTGTCTCAAATTTGTA 57.863 29.630 17.47 5.12 0.00 2.41
630 633 9.191995 CCCAAAATAAGTGTCTCAAATTTGTAC 57.808 33.333 17.47 16.14 0.00 2.90
635 638 9.726438 AATAAGTGTCTCAAATTTGTACTAGCT 57.274 29.630 17.47 12.61 0.00 3.32
636 639 7.659652 AAGTGTCTCAAATTTGTACTAGCTC 57.340 36.000 17.47 5.68 0.00 4.09
637 640 6.998802 AGTGTCTCAAATTTGTACTAGCTCT 58.001 36.000 17.47 7.56 0.00 4.09
638 641 8.123639 AGTGTCTCAAATTTGTACTAGCTCTA 57.876 34.615 17.47 0.00 0.00 2.43
639 642 8.247562 AGTGTCTCAAATTTGTACTAGCTCTAG 58.752 37.037 17.47 4.26 39.04 2.43
666 737 8.366671 ACAAAGTTGTACTAAGCTTAAGACAG 57.633 34.615 15.83 6.05 40.16 3.51
667 738 7.985752 ACAAAGTTGTACTAAGCTTAAGACAGT 59.014 33.333 15.83 10.85 40.16 3.55
676 747 8.336801 ACTAAGCTTAAGACAGTTATTTTGGG 57.663 34.615 6.67 0.00 0.00 4.12
692 763 4.348020 TTTGGGACAGAGGGAGTAGTAT 57.652 45.455 0.00 0.00 42.39 2.12
852 1509 2.160822 CAGCCCAAGATGGATCGTAG 57.839 55.000 0.00 0.00 40.96 3.51
853 1510 1.688735 CAGCCCAAGATGGATCGTAGA 59.311 52.381 0.00 0.00 40.96 2.59
888 1550 0.550914 TCCCCCGGAAGAATGAATGG 59.449 55.000 0.73 0.00 0.00 3.16
893 1555 2.292267 CCGGAAGAATGAATGGTCCAG 58.708 52.381 0.00 0.00 0.00 3.86
1158 1833 0.623911 TCTCCCGTCTCTACTCCCCT 60.624 60.000 0.00 0.00 0.00 4.79
1195 1870 5.300286 GCTTGCTTATTGGGATACTGACATT 59.700 40.000 0.00 0.00 0.00 2.71
1217 1892 2.540769 CGATTGTGCGACTGTTTGGTTT 60.541 45.455 0.00 0.00 0.00 3.27
1715 2390 2.045885 AGGAGAAGTATGGTCCCAAGGA 59.954 50.000 0.00 0.00 0.00 3.36
1728 2403 0.593128 CCAAGGAACTGAACAAGCCG 59.407 55.000 0.00 0.00 40.86 5.52
1898 2573 5.906073 AGTAAAACCATGCTCCATATTTGC 58.094 37.500 0.00 0.00 0.00 3.68
2198 2873 3.279434 CCCTAGTTTGGGGATCTTTTCG 58.721 50.000 0.00 0.00 46.50 3.46
2213 2888 7.308951 GGGATCTTTTCGTTATGGAAACTTCAA 60.309 37.037 0.00 0.00 35.75 2.69
2570 3245 2.665537 GACAGTGAAAGAGATGCTGACG 59.334 50.000 0.00 0.00 0.00 4.35
2670 3345 0.603569 TTGAAGACTGGAGAGGCGAC 59.396 55.000 0.00 0.00 29.20 5.19
2739 3414 3.405831 CTGCAGAAGAACTGGTCAATGA 58.594 45.455 8.42 0.00 45.82 2.57
2975 3650 5.935945 TGTGGTCTGTTGAAAGATAAGGAA 58.064 37.500 0.00 0.00 0.00 3.36
3079 3754 4.943705 ACTTGTCGCTCAAATGGATGTATT 59.056 37.500 0.00 0.00 35.48 1.89
3158 3833 6.134754 GTGGGAGTACCTATTTTCTCCTAGA 58.865 44.000 9.43 0.00 43.97 2.43
3174 3849 3.703556 TCCTAGATTGGACTCTTGCTCAG 59.296 47.826 0.00 0.00 0.00 3.35
3182 3857 2.630158 GACTCTTGCTCAGTGATGCAT 58.370 47.619 15.10 0.00 39.07 3.96
3184 3859 3.418995 ACTCTTGCTCAGTGATGCATTT 58.581 40.909 15.10 0.00 39.07 2.32
3235 3910 1.202818 AGCTCCAGGTTTTCTGTGGAC 60.203 52.381 0.00 0.00 41.83 4.02
3384 4062 5.050159 GTCAATTTTGGATTTGTTGTGCCTC 60.050 40.000 0.00 0.00 0.00 4.70
3396 4074 4.661222 TGTTGTGCCTCTATCATTTCCAA 58.339 39.130 0.00 0.00 0.00 3.53
3427 4107 4.072131 TCCAAGATACAGGAACTTTGTGC 58.928 43.478 0.00 0.00 34.60 4.57
3432 4112 5.564550 AGATACAGGAACTTTGTGCTTGAT 58.435 37.500 0.00 0.00 34.60 2.57
3433 4113 6.006449 AGATACAGGAACTTTGTGCTTGATT 58.994 36.000 0.00 0.00 34.60 2.57
3434 4114 6.491403 AGATACAGGAACTTTGTGCTTGATTT 59.509 34.615 0.00 0.00 34.60 2.17
3501 4187 3.998341 TGCTGTGAACTTTTCCGGTATAC 59.002 43.478 0.00 0.00 0.00 1.47
3502 4188 4.251268 GCTGTGAACTTTTCCGGTATACT 58.749 43.478 0.00 0.00 0.00 2.12
3503 4189 4.092968 GCTGTGAACTTTTCCGGTATACTG 59.907 45.833 0.00 4.57 0.00 2.74
3504 4190 5.217978 TGTGAACTTTTCCGGTATACTGT 57.782 39.130 10.79 0.00 0.00 3.55
3505 4191 6.343716 TGTGAACTTTTCCGGTATACTGTA 57.656 37.500 10.79 0.00 0.00 2.74
3608 4294 0.602106 TCAGCAACACAGCTCTCAGC 60.602 55.000 0.00 0.00 44.54 4.26
3743 4432 1.978617 AGGCCGGACATTTTGCAGG 60.979 57.895 11.69 0.00 0.00 4.85
4087 4776 0.540923 TTGCTGCAAAACTTGGGCTT 59.459 45.000 13.51 0.00 0.00 4.35
4388 5077 9.017669 CGACTTGAACTAAACCAGTATATACAC 57.982 37.037 15.18 0.00 36.04 2.90
4389 5078 9.865321 GACTTGAACTAAACCAGTATATACACA 57.135 33.333 15.18 0.00 36.04 3.72
4394 5083 9.962759 GAACTAAACCAGTATATACACAAAACG 57.037 33.333 15.18 1.76 36.04 3.60
4395 5084 7.967178 ACTAAACCAGTATATACACAAAACGC 58.033 34.615 15.18 0.00 34.98 4.84
4396 5085 5.459110 AACCAGTATATACACAAAACGCG 57.541 39.130 15.18 3.53 0.00 6.01
4397 5086 4.746729 ACCAGTATATACACAAAACGCGA 58.253 39.130 15.93 0.00 0.00 5.87
4398 5087 5.353938 ACCAGTATATACACAAAACGCGAT 58.646 37.500 15.93 0.00 0.00 4.58
4399 5088 5.813672 ACCAGTATATACACAAAACGCGATT 59.186 36.000 15.93 3.59 0.00 3.34
4400 5089 6.314400 ACCAGTATATACACAAAACGCGATTT 59.686 34.615 15.93 11.81 0.00 2.17
4401 5090 6.627276 CCAGTATATACACAAAACGCGATTTG 59.373 38.462 32.05 32.05 44.11 2.32
4402 5091 6.138546 CAGTATATACACAAAACGCGATTTGC 59.861 38.462 33.13 18.55 42.68 3.68
4403 5092 3.552604 ATACACAAAACGCGATTTGCT 57.447 38.095 33.13 23.29 42.68 3.91
4404 5093 1.476074 ACACAAAACGCGATTTGCTG 58.524 45.000 33.13 29.26 42.68 4.41
4405 5094 1.064803 ACACAAAACGCGATTTGCTGA 59.935 42.857 33.13 0.00 42.68 4.26
4406 5095 2.115595 CACAAAACGCGATTTGCTGAA 58.884 42.857 33.13 0.00 42.68 3.02
4407 5096 2.097925 CACAAAACGCGATTTGCTGAAC 60.098 45.455 33.13 0.00 42.68 3.18
4408 5097 1.451651 CAAAACGCGATTTGCTGAACC 59.548 47.619 25.50 0.00 43.27 3.62
4409 5098 0.039527 AAACGCGATTTGCTGAACCC 60.040 50.000 15.93 0.00 43.27 4.11
4410 5099 0.889186 AACGCGATTTGCTGAACCCT 60.889 50.000 15.93 0.00 43.27 4.34
4411 5100 0.889186 ACGCGATTTGCTGAACCCTT 60.889 50.000 15.93 0.00 43.27 3.95
4412 5101 0.454957 CGCGATTTGCTGAACCCTTG 60.455 55.000 0.00 0.00 43.27 3.61
4413 5102 0.598065 GCGATTTGCTGAACCCTTGT 59.402 50.000 0.00 0.00 41.73 3.16
4414 5103 1.810151 GCGATTTGCTGAACCCTTGTA 59.190 47.619 0.00 0.00 41.73 2.41
4415 5104 2.423538 GCGATTTGCTGAACCCTTGTAT 59.576 45.455 0.00 0.00 41.73 2.29
4416 5105 3.487544 GCGATTTGCTGAACCCTTGTATC 60.488 47.826 0.00 0.00 41.73 2.24
4417 5106 3.242413 CGATTTGCTGAACCCTTGTATCG 60.242 47.826 0.00 0.00 0.00 2.92
4418 5107 1.448985 TTGCTGAACCCTTGTATCGC 58.551 50.000 0.00 0.00 0.00 4.58
4419 5108 0.613260 TGCTGAACCCTTGTATCGCT 59.387 50.000 0.00 0.00 0.00 4.93
4420 5109 1.009829 GCTGAACCCTTGTATCGCTG 58.990 55.000 0.00 0.00 0.00 5.18
4421 5110 1.405526 GCTGAACCCTTGTATCGCTGA 60.406 52.381 0.00 0.00 0.00 4.26
4422 5111 2.271800 CTGAACCCTTGTATCGCTGAC 58.728 52.381 0.00 0.00 0.00 3.51
4423 5112 1.066430 TGAACCCTTGTATCGCTGACC 60.066 52.381 0.00 0.00 0.00 4.02
4424 5113 0.252197 AACCCTTGTATCGCTGACCC 59.748 55.000 0.00 0.00 0.00 4.46
4425 5114 0.617820 ACCCTTGTATCGCTGACCCT 60.618 55.000 0.00 0.00 0.00 4.34
4426 5115 0.541863 CCCTTGTATCGCTGACCCTT 59.458 55.000 0.00 0.00 0.00 3.95
4427 5116 1.760613 CCCTTGTATCGCTGACCCTTA 59.239 52.381 0.00 0.00 0.00 2.69
4428 5117 2.368875 CCCTTGTATCGCTGACCCTTAT 59.631 50.000 0.00 0.00 0.00 1.73
4429 5118 3.576982 CCCTTGTATCGCTGACCCTTATA 59.423 47.826 0.00 0.00 0.00 0.98
4430 5119 4.557205 CCTTGTATCGCTGACCCTTATAC 58.443 47.826 0.00 0.00 0.00 1.47
4431 5120 3.909776 TGTATCGCTGACCCTTATACG 57.090 47.619 0.00 0.00 0.00 3.06
4432 5121 2.030540 TGTATCGCTGACCCTTATACGC 60.031 50.000 0.00 0.00 0.00 4.42
4433 5122 0.039437 ATCGCTGACCCTTATACGCG 60.039 55.000 3.53 3.53 41.69 6.01
4434 5123 1.096967 TCGCTGACCCTTATACGCGA 61.097 55.000 15.93 0.00 45.96 5.87
4435 5124 0.039437 CGCTGACCCTTATACGCGAT 60.039 55.000 15.93 4.50 42.82 4.58
4436 5125 1.602165 CGCTGACCCTTATACGCGATT 60.602 52.381 15.93 1.06 42.82 3.34
4437 5126 2.351060 CGCTGACCCTTATACGCGATTA 60.351 50.000 15.93 0.00 42.82 1.75
4438 5127 2.985139 GCTGACCCTTATACGCGATTAC 59.015 50.000 15.93 0.00 0.00 1.89
4439 5128 3.551454 GCTGACCCTTATACGCGATTACA 60.551 47.826 15.93 0.00 0.00 2.41
4440 5129 4.227538 CTGACCCTTATACGCGATTACAG 58.772 47.826 15.93 5.77 0.00 2.74
4441 5130 2.985139 GACCCTTATACGCGATTACAGC 59.015 50.000 15.93 0.00 0.00 4.40
4442 5131 2.363038 ACCCTTATACGCGATTACAGCA 59.637 45.455 15.93 0.00 34.19 4.41
4443 5132 2.987149 CCCTTATACGCGATTACAGCAG 59.013 50.000 15.93 0.00 34.19 4.24
4444 5133 2.408704 CCTTATACGCGATTACAGCAGC 59.591 50.000 15.93 0.00 34.19 5.25
4445 5134 2.060326 TATACGCGATTACAGCAGCC 57.940 50.000 15.93 0.00 34.19 4.85
4446 5135 0.939577 ATACGCGATTACAGCAGCCG 60.940 55.000 15.93 0.00 34.19 5.52
4447 5136 1.995646 TACGCGATTACAGCAGCCGA 61.996 55.000 15.93 0.00 34.19 5.54
4448 5137 2.164663 CGCGATTACAGCAGCCGAA 61.165 57.895 0.00 0.00 34.19 4.30
4449 5138 1.348594 GCGATTACAGCAGCCGAAC 59.651 57.895 0.00 0.00 34.19 3.95
4450 5139 1.358725 GCGATTACAGCAGCCGAACA 61.359 55.000 0.00 0.00 34.19 3.18
4451 5140 0.647410 CGATTACAGCAGCCGAACAG 59.353 55.000 0.00 0.00 0.00 3.16
4452 5141 1.735700 CGATTACAGCAGCCGAACAGA 60.736 52.381 0.00 0.00 0.00 3.41
4453 5142 1.661112 GATTACAGCAGCCGAACAGAC 59.339 52.381 0.00 0.00 0.00 3.51
4454 5143 0.679505 TTACAGCAGCCGAACAGACT 59.320 50.000 0.00 0.00 0.00 3.24
4455 5144 0.038251 TACAGCAGCCGAACAGACTG 60.038 55.000 0.00 0.00 34.48 3.51
4458 5147 2.743928 CAGCCGAACAGACTGCCC 60.744 66.667 1.25 0.00 0.00 5.36
4459 5148 4.379243 AGCCGAACAGACTGCCCG 62.379 66.667 1.25 6.25 0.00 6.13
4460 5149 4.681978 GCCGAACAGACTGCCCGT 62.682 66.667 1.25 0.00 0.00 5.28
4461 5150 2.967397 CCGAACAGACTGCCCGTA 59.033 61.111 1.25 0.00 0.00 4.02
4462 5151 1.153823 CCGAACAGACTGCCCGTAG 60.154 63.158 1.25 0.00 0.00 3.51
4463 5152 1.805945 CGAACAGACTGCCCGTAGC 60.806 63.158 1.25 0.00 44.14 3.58
4475 5164 3.299585 CGTAGCGGAACAGATGCG 58.700 61.111 0.00 0.00 46.83 4.73
4476 5165 2.230940 CGTAGCGGAACAGATGCGG 61.231 63.158 0.00 0.00 43.91 5.69
4477 5166 1.883084 GTAGCGGAACAGATGCGGG 60.883 63.158 0.00 0.00 43.91 6.13
4478 5167 3.088941 TAGCGGAACAGATGCGGGG 62.089 63.158 0.00 0.00 43.91 5.73
4479 5168 4.778143 GCGGAACAGATGCGGGGT 62.778 66.667 0.00 0.00 43.91 4.95
4480 5169 2.046314 CGGAACAGATGCGGGGTT 60.046 61.111 0.00 0.00 39.48 4.11
4481 5170 1.674322 CGGAACAGATGCGGGGTTT 60.674 57.895 0.00 0.00 39.48 3.27
4482 5171 1.883021 GGAACAGATGCGGGGTTTG 59.117 57.895 0.00 0.00 0.00 2.93
4483 5172 0.893727 GGAACAGATGCGGGGTTTGT 60.894 55.000 0.00 0.00 0.00 2.83
4484 5173 0.958822 GAACAGATGCGGGGTTTGTT 59.041 50.000 0.00 0.00 34.91 2.83
4485 5174 0.958822 AACAGATGCGGGGTTTGTTC 59.041 50.000 0.00 0.00 0.00 3.18
4486 5175 1.234615 ACAGATGCGGGGTTTGTTCG 61.235 55.000 0.00 0.00 0.00 3.95
4487 5176 1.674322 AGATGCGGGGTTTGTTCGG 60.674 57.895 0.00 0.00 0.00 4.30
4488 5177 3.336715 GATGCGGGGTTTGTTCGGC 62.337 63.158 0.00 0.00 0.00 5.54
4489 5178 3.860930 ATGCGGGGTTTGTTCGGCT 62.861 57.895 0.00 0.00 0.00 5.52
4490 5179 4.038080 GCGGGGTTTGTTCGGCTG 62.038 66.667 0.00 0.00 0.00 4.85
4491 5180 4.038080 CGGGGTTTGTTCGGCTGC 62.038 66.667 0.00 0.00 0.00 5.25
4492 5181 2.909965 GGGGTTTGTTCGGCTGCA 60.910 61.111 0.50 0.00 0.00 4.41
4493 5182 2.644992 GGGTTTGTTCGGCTGCAG 59.355 61.111 10.11 10.11 0.00 4.41
4494 5183 2.050077 GGTTTGTTCGGCTGCAGC 60.050 61.111 30.88 30.88 41.14 5.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 9.533831 CCCTAGAGGCAATAATAAAATGGTTAT 57.466 33.333 0.00 0.00 0.00 1.89
15 16 8.934023 CCCTAGAGGCAATAATAAAATGGTTA 57.066 34.615 0.00 0.00 0.00 2.85
16 17 7.839680 CCCTAGAGGCAATAATAAAATGGTT 57.160 36.000 0.00 0.00 0.00 3.67
32 33 4.392940 CTGTTGGAAATATGCCCTAGAGG 58.607 47.826 0.00 0.00 39.47 3.69
33 34 3.817647 GCTGTTGGAAATATGCCCTAGAG 59.182 47.826 0.00 0.00 0.00 2.43
34 35 3.459598 AGCTGTTGGAAATATGCCCTAGA 59.540 43.478 0.00 0.00 0.00 2.43
35 36 3.567164 CAGCTGTTGGAAATATGCCCTAG 59.433 47.826 5.25 0.00 0.00 3.02
36 37 3.554934 CAGCTGTTGGAAATATGCCCTA 58.445 45.455 5.25 0.00 0.00 3.53
37 38 2.381911 CAGCTGTTGGAAATATGCCCT 58.618 47.619 5.25 0.00 0.00 5.19
38 39 1.202452 GCAGCTGTTGGAAATATGCCC 60.202 52.381 16.64 0.00 0.00 5.36
39 40 1.477700 TGCAGCTGTTGGAAATATGCC 59.522 47.619 16.64 0.00 0.00 4.40
40 41 2.925563 GTTGCAGCTGTTGGAAATATGC 59.074 45.455 16.64 0.00 38.95 3.14
41 42 3.514645 GGTTGCAGCTGTTGGAAATATG 58.485 45.455 16.64 0.00 38.95 1.78
42 43 2.497273 GGGTTGCAGCTGTTGGAAATAT 59.503 45.455 16.64 0.00 38.95 1.28
43 44 1.892474 GGGTTGCAGCTGTTGGAAATA 59.108 47.619 16.64 0.00 38.95 1.40
44 45 0.681175 GGGTTGCAGCTGTTGGAAAT 59.319 50.000 16.64 0.00 38.95 2.17
45 46 1.398958 GGGGTTGCAGCTGTTGGAAA 61.399 55.000 16.64 0.00 38.95 3.13
46 47 1.832167 GGGGTTGCAGCTGTTGGAA 60.832 57.895 16.64 0.53 34.45 3.53
47 48 2.203480 GGGGTTGCAGCTGTTGGA 60.203 61.111 16.64 0.00 0.00 3.53
48 49 2.091102 CTTGGGGTTGCAGCTGTTGG 62.091 60.000 16.64 0.00 0.00 3.77
49 50 1.364901 CTTGGGGTTGCAGCTGTTG 59.635 57.895 16.64 0.00 0.00 3.33
50 51 1.833934 CCTTGGGGTTGCAGCTGTT 60.834 57.895 16.64 0.00 0.00 3.16
51 52 2.203538 CCTTGGGGTTGCAGCTGT 60.204 61.111 16.64 0.00 0.00 4.40
52 53 2.993264 CCCTTGGGGTTGCAGCTG 60.993 66.667 10.11 10.11 38.25 4.24
84 85 1.000521 ACTACCCCATCGTCGGTCA 60.001 57.895 0.00 0.00 33.36 4.02
99 100 1.532604 CCACACCTGTCCGAGCACTA 61.533 60.000 0.00 0.00 0.00 2.74
100 101 2.737180 CACACCTGTCCGAGCACT 59.263 61.111 0.00 0.00 0.00 4.40
117 118 0.385390 ATCGATTGGCGCAAATTCCC 59.615 50.000 12.21 0.00 40.61 3.97
194 195 2.954753 CTCCAGTCGGTTGCAACGC 61.955 63.158 22.67 14.97 0.00 4.84
227 229 2.166459 CCCACACTATGTCATCGTGAGT 59.834 50.000 20.90 2.66 33.13 3.41
249 251 3.201290 CACTTGCATCACTGGATAGTCC 58.799 50.000 0.00 0.00 34.07 3.85
288 290 4.471904 TCCTTTCATGATAAGCGTCAGT 57.528 40.909 0.00 0.00 0.00 3.41
298 300 3.274288 GTTCCTCGCTTCCTTTCATGAT 58.726 45.455 0.00 0.00 0.00 2.45
423 426 2.364186 CCAGCCCCCAACCAATCC 60.364 66.667 0.00 0.00 0.00 3.01
477 480 6.633500 TCTTCTTAAGTGGTTGTTTGGATG 57.367 37.500 1.63 0.00 0.00 3.51
575 578 4.164221 GGGAGTATGTCTCAAAATCCCTCA 59.836 45.833 0.15 0.00 44.40 3.86
604 607 9.191995 GTACAAATTTGAGACACTTATTTTGGG 57.808 33.333 24.64 0.00 0.00 4.12
613 616 6.998802 AGAGCTAGTACAAATTTGAGACACT 58.001 36.000 24.64 19.94 0.00 3.55
614 617 8.030106 ACTAGAGCTAGTACAAATTTGAGACAC 58.970 37.037 24.64 14.81 43.98 3.67
640 643 9.472361 CTGTCTTAAGCTTAGTACAACTTTGTA 57.528 33.333 18.24 0.00 42.35 2.41
643 646 8.959705 AACTGTCTTAAGCTTAGTACAACTTT 57.040 30.769 18.24 11.70 0.00 2.66
650 653 9.444600 CCCAAAATAACTGTCTTAAGCTTAGTA 57.555 33.333 6.24 0.00 0.00 1.82
651 654 8.161425 TCCCAAAATAACTGTCTTAAGCTTAGT 58.839 33.333 6.24 0.00 0.00 2.24
652 655 8.451748 GTCCCAAAATAACTGTCTTAAGCTTAG 58.548 37.037 6.24 0.00 0.00 2.18
653 656 7.940137 TGTCCCAAAATAACTGTCTTAAGCTTA 59.060 33.333 0.86 0.86 0.00 3.09
654 657 6.775629 TGTCCCAAAATAACTGTCTTAAGCTT 59.224 34.615 3.48 3.48 0.00 3.74
656 659 6.430000 TCTGTCCCAAAATAACTGTCTTAAGC 59.570 38.462 0.00 0.00 0.00 3.09
657 660 7.119846 CCTCTGTCCCAAAATAACTGTCTTAAG 59.880 40.741 0.00 0.00 0.00 1.85
658 661 6.940298 CCTCTGTCCCAAAATAACTGTCTTAA 59.060 38.462 0.00 0.00 0.00 1.85
660 663 5.316987 CCTCTGTCCCAAAATAACTGTCTT 58.683 41.667 0.00 0.00 0.00 3.01
666 737 4.302559 ACTCCCTCTGTCCCAAAATAAC 57.697 45.455 0.00 0.00 0.00 1.89
667 738 5.098663 ACTACTCCCTCTGTCCCAAAATAA 58.901 41.667 0.00 0.00 0.00 1.40
673 744 4.348020 AAATACTACTCCCTCTGTCCCA 57.652 45.455 0.00 0.00 0.00 4.37
745 816 7.548196 AAAACTACGTCTCAAAATTGTCTCA 57.452 32.000 0.00 0.00 0.00 3.27
775 846 7.778470 ACACTAGCTATATCTCAAAACTTGC 57.222 36.000 0.00 0.00 0.00 4.01
810 1467 1.914700 CTTTCGCGAGCTAGTCAAGTC 59.085 52.381 9.59 0.00 0.00 3.01
846 1503 1.766461 CCCAAGGGCCCTCTACGAT 60.766 63.158 28.84 4.77 0.00 3.73
847 1504 2.365105 CCCAAGGGCCCTCTACGA 60.365 66.667 28.84 0.00 0.00 3.43
1158 1833 0.391130 AGCAAGCTAAATCCACGCGA 60.391 50.000 15.93 0.00 0.00 5.87
1195 1870 0.865111 CCAAACAGTCGCACAATCGA 59.135 50.000 0.00 0.00 35.95 3.59
1217 1892 1.136695 CAGGAAAGCTGCACAAAACCA 59.863 47.619 1.02 0.00 0.00 3.67
1728 2403 0.322456 TACCCTGTGCATTGCTGGAC 60.322 55.000 10.49 0.27 43.48 4.02
2198 2873 7.750903 GCTCTACACATTTGAAGTTTCCATAAC 59.249 37.037 0.00 0.00 0.00 1.89
2570 3245 5.788450 TCTCTTTCTCTTCACAACATCCTC 58.212 41.667 0.00 0.00 0.00 3.71
2670 3345 4.409570 CGCTTCTCCATTTTCAGATTGTG 58.590 43.478 0.00 0.00 0.00 3.33
2739 3414 8.521176 GCTTCTTAATATCTTGATGATTGGCAT 58.479 33.333 0.00 0.00 40.77 4.40
2808 3483 6.288294 AGCAACATCGAATATAGCTTTACCA 58.712 36.000 0.00 0.00 0.00 3.25
3158 3833 3.607741 CATCACTGAGCAAGAGTCCAAT 58.392 45.455 0.00 0.00 0.00 3.16
3174 3849 4.783242 ACGAAACAGTACAAATGCATCAC 58.217 39.130 0.00 0.00 0.00 3.06
3184 3859 9.079833 GCTATCTACAATAAACGAAACAGTACA 57.920 33.333 0.00 0.00 0.00 2.90
3235 3910 3.627577 CCACCAATCTAATGTTCTTCCCG 59.372 47.826 0.00 0.00 0.00 5.14
3384 4062 7.452880 TGGAACAGTTCTTTGGAAATGATAG 57.547 36.000 13.13 0.00 46.50 2.08
3396 4074 5.825593 TCCTGTATCTTGGAACAGTTCTT 57.174 39.130 13.13 0.00 42.39 2.52
3501 4187 2.414559 CGAGTTGCCTTGCCAAATACAG 60.415 50.000 0.00 0.00 0.00 2.74
3502 4188 1.539388 CGAGTTGCCTTGCCAAATACA 59.461 47.619 0.00 0.00 0.00 2.29
3503 4189 1.539827 ACGAGTTGCCTTGCCAAATAC 59.460 47.619 0.00 0.00 0.00 1.89
3504 4190 1.904287 ACGAGTTGCCTTGCCAAATA 58.096 45.000 0.00 0.00 0.00 1.40
3505 4191 1.039856 AACGAGTTGCCTTGCCAAAT 58.960 45.000 0.00 0.00 0.00 2.32
3524 4210 7.078011 TGCGTATATAGTTGTCAATTTGCAA 57.922 32.000 0.00 0.00 0.00 4.08
3743 4432 2.943036 TTTGTTGTCTGGGGTCCTAC 57.057 50.000 0.00 0.00 0.00 3.18
4087 4776 1.942776 TCCTCTCTGCATGTCCTTGA 58.057 50.000 0.00 0.00 0.00 3.02
4096 4785 1.039068 GCTGCTCTATCCTCTCTGCA 58.961 55.000 0.00 0.00 0.00 4.41
4394 5083 0.598065 ACAAGGGTTCAGCAAATCGC 59.402 50.000 0.00 0.00 42.91 4.58
4395 5084 3.242413 CGATACAAGGGTTCAGCAAATCG 60.242 47.826 0.00 0.00 0.00 3.34
4396 5085 3.487544 GCGATACAAGGGTTCAGCAAATC 60.488 47.826 0.00 0.00 0.00 2.17
4397 5086 2.423538 GCGATACAAGGGTTCAGCAAAT 59.576 45.455 0.00 0.00 0.00 2.32
4398 5087 1.810151 GCGATACAAGGGTTCAGCAAA 59.190 47.619 0.00 0.00 0.00 3.68
4399 5088 1.003118 AGCGATACAAGGGTTCAGCAA 59.997 47.619 0.00 0.00 0.00 3.91
4400 5089 0.613260 AGCGATACAAGGGTTCAGCA 59.387 50.000 0.00 0.00 0.00 4.41
4401 5090 1.009829 CAGCGATACAAGGGTTCAGC 58.990 55.000 0.00 0.00 0.00 4.26
4402 5091 2.271800 GTCAGCGATACAAGGGTTCAG 58.728 52.381 0.00 0.00 0.00 3.02
4403 5092 1.066430 GGTCAGCGATACAAGGGTTCA 60.066 52.381 0.00 0.00 0.00 3.18
4404 5093 1.653151 GGTCAGCGATACAAGGGTTC 58.347 55.000 0.00 0.00 0.00 3.62
4405 5094 0.252197 GGGTCAGCGATACAAGGGTT 59.748 55.000 0.00 0.00 0.00 4.11
4406 5095 0.617820 AGGGTCAGCGATACAAGGGT 60.618 55.000 0.00 0.00 0.00 4.34
4407 5096 0.541863 AAGGGTCAGCGATACAAGGG 59.458 55.000 0.00 0.00 0.00 3.95
4408 5097 3.753294 ATAAGGGTCAGCGATACAAGG 57.247 47.619 0.00 0.00 0.00 3.61
4409 5098 4.227538 CGTATAAGGGTCAGCGATACAAG 58.772 47.826 0.00 0.00 0.00 3.16
4410 5099 3.551454 GCGTATAAGGGTCAGCGATACAA 60.551 47.826 0.00 0.00 0.00 2.41
4411 5100 2.030540 GCGTATAAGGGTCAGCGATACA 60.031 50.000 0.00 0.00 0.00 2.29
4412 5101 2.593257 GCGTATAAGGGTCAGCGATAC 58.407 52.381 0.00 0.00 0.00 2.24
4414 5103 3.888093 GCGTATAAGGGTCAGCGAT 57.112 52.632 0.00 0.00 0.00 4.58
4416 5105 3.917870 CGCGTATAAGGGTCAGCG 58.082 61.111 0.00 0.00 41.56 5.18
4417 5106 2.150397 AATCGCGTATAAGGGTCAGC 57.850 50.000 5.77 0.00 0.00 4.26
4418 5107 4.227538 CTGTAATCGCGTATAAGGGTCAG 58.772 47.826 5.77 0.64 0.00 3.51
4419 5108 3.551454 GCTGTAATCGCGTATAAGGGTCA 60.551 47.826 5.77 0.00 0.00 4.02
4420 5109 2.985139 GCTGTAATCGCGTATAAGGGTC 59.015 50.000 5.77 0.00 0.00 4.46
4421 5110 2.363038 TGCTGTAATCGCGTATAAGGGT 59.637 45.455 5.77 0.00 0.00 4.34
4422 5111 2.987149 CTGCTGTAATCGCGTATAAGGG 59.013 50.000 5.77 0.00 0.00 3.95
4423 5112 2.408704 GCTGCTGTAATCGCGTATAAGG 59.591 50.000 5.77 0.00 0.00 2.69
4424 5113 2.408704 GGCTGCTGTAATCGCGTATAAG 59.591 50.000 5.77 0.00 0.00 1.73
4425 5114 2.400399 GGCTGCTGTAATCGCGTATAA 58.600 47.619 5.77 0.00 0.00 0.98
4426 5115 1.664874 CGGCTGCTGTAATCGCGTATA 60.665 52.381 5.77 0.00 0.00 1.47
4427 5116 0.939577 CGGCTGCTGTAATCGCGTAT 60.940 55.000 5.77 0.00 0.00 3.06
4428 5117 1.587876 CGGCTGCTGTAATCGCGTA 60.588 57.895 5.77 0.00 0.00 4.42
4429 5118 2.829043 TTCGGCTGCTGTAATCGCGT 62.829 55.000 5.77 0.00 0.00 6.01
4430 5119 2.164663 TTCGGCTGCTGTAATCGCG 61.165 57.895 8.55 0.00 0.00 5.87
4431 5120 1.348594 GTTCGGCTGCTGTAATCGC 59.651 57.895 8.55 0.00 0.00 4.58
4432 5121 0.647410 CTGTTCGGCTGCTGTAATCG 59.353 55.000 8.55 0.00 0.00 3.34
4433 5122 1.661112 GTCTGTTCGGCTGCTGTAATC 59.339 52.381 8.55 0.00 0.00 1.75
4434 5123 1.276421 AGTCTGTTCGGCTGCTGTAAT 59.724 47.619 8.55 0.00 0.00 1.89
4435 5124 0.679505 AGTCTGTTCGGCTGCTGTAA 59.320 50.000 8.55 0.00 0.00 2.41
4436 5125 0.038251 CAGTCTGTTCGGCTGCTGTA 60.038 55.000 8.55 0.00 0.00 2.74
4437 5126 1.301244 CAGTCTGTTCGGCTGCTGT 60.301 57.895 8.55 0.00 0.00 4.40
4438 5127 3.559024 CAGTCTGTTCGGCTGCTG 58.441 61.111 0.95 0.95 0.00 4.41
4441 5130 2.743928 GGGCAGTCTGTTCGGCTG 60.744 66.667 0.93 0.00 0.00 4.85
4442 5131 4.379243 CGGGCAGTCTGTTCGGCT 62.379 66.667 0.93 0.00 0.00 5.52
4443 5132 3.291101 TACGGGCAGTCTGTTCGGC 62.291 63.158 16.93 0.00 36.22 5.54
4444 5133 1.153823 CTACGGGCAGTCTGTTCGG 60.154 63.158 16.93 10.08 36.22 4.30
4445 5134 1.805945 GCTACGGGCAGTCTGTTCG 60.806 63.158 12.95 12.95 41.35 3.95
4446 5135 1.805945 CGCTACGGGCAGTCTGTTC 60.806 63.158 0.93 0.00 41.91 3.18
4447 5136 2.261671 CGCTACGGGCAGTCTGTT 59.738 61.111 0.93 0.00 41.91 3.16
4448 5137 3.760035 CCGCTACGGGCAGTCTGT 61.760 66.667 0.93 0.00 44.15 3.41
4458 5147 2.230940 CCGCATCTGTTCCGCTACG 61.231 63.158 0.00 0.00 0.00 3.51
4459 5148 1.883084 CCCGCATCTGTTCCGCTAC 60.883 63.158 0.00 0.00 0.00 3.58
4460 5149 2.499205 CCCGCATCTGTTCCGCTA 59.501 61.111 0.00 0.00 0.00 4.26
4461 5150 4.473520 CCCCGCATCTGTTCCGCT 62.474 66.667 0.00 0.00 0.00 5.52
4462 5151 4.778143 ACCCCGCATCTGTTCCGC 62.778 66.667 0.00 0.00 0.00 5.54
4463 5152 1.674322 AAACCCCGCATCTGTTCCG 60.674 57.895 0.00 0.00 0.00 4.30
4464 5153 0.893727 ACAAACCCCGCATCTGTTCC 60.894 55.000 0.00 0.00 0.00 3.62
4465 5154 0.958822 AACAAACCCCGCATCTGTTC 59.041 50.000 0.00 0.00 0.00 3.18
4466 5155 0.958822 GAACAAACCCCGCATCTGTT 59.041 50.000 0.00 0.00 33.07 3.16
4467 5156 1.234615 CGAACAAACCCCGCATCTGT 61.235 55.000 0.00 0.00 0.00 3.41
4468 5157 1.501741 CGAACAAACCCCGCATCTG 59.498 57.895 0.00 0.00 0.00 2.90
4469 5158 1.674322 CCGAACAAACCCCGCATCT 60.674 57.895 0.00 0.00 0.00 2.90
4470 5159 2.874751 CCGAACAAACCCCGCATC 59.125 61.111 0.00 0.00 0.00 3.91
4471 5160 3.370231 GCCGAACAAACCCCGCAT 61.370 61.111 0.00 0.00 0.00 4.73
4472 5161 4.572571 AGCCGAACAAACCCCGCA 62.573 61.111 0.00 0.00 0.00 5.69
4473 5162 4.038080 CAGCCGAACAAACCCCGC 62.038 66.667 0.00 0.00 0.00 6.13
4474 5163 4.038080 GCAGCCGAACAAACCCCG 62.038 66.667 0.00 0.00 0.00 5.73
4475 5164 2.909965 TGCAGCCGAACAAACCCC 60.910 61.111 0.00 0.00 0.00 4.95
4476 5165 2.644992 CTGCAGCCGAACAAACCC 59.355 61.111 0.00 0.00 0.00 4.11
4477 5166 2.050077 GCTGCAGCCGAACAAACC 60.050 61.111 28.76 0.00 34.31 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.