Multiple sequence alignment - TraesCS3B01G239300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G239300 chr3B 100.000 7374 0 0 1 7374 377433616 377426243 0.000000e+00 13618.0
1 TraesCS3B01G239300 chr3B 87.931 58 1 2 699 750 88943732 88943675 6.180000e-06 63.9
2 TraesCS3B01G239300 chr3A 96.152 2651 70 11 839 3470 370250741 370248104 0.000000e+00 4301.0
3 TraesCS3B01G239300 chr3A 94.444 1404 45 8 5511 6907 370244600 370243223 0.000000e+00 2130.0
4 TraesCS3B01G239300 chr3A 92.700 1315 54 14 4152 5462 370247624 370246348 0.000000e+00 1858.0
5 TraesCS3B01G239300 chr3A 89.916 357 17 11 6901 7247 370243020 370242673 6.790000e-120 442.0
6 TraesCS3B01G239300 chr3A 88.360 378 26 10 191 563 370252202 370251838 8.780000e-119 438.0
7 TraesCS3B01G239300 chr3A 96.172 209 8 0 3958 4166 370248106 370247898 7.080000e-90 342.0
8 TraesCS3B01G239300 chr3A 93.151 146 9 1 3498 3642 648500222 648500077 5.800000e-51 213.0
9 TraesCS3B01G239300 chr3A 81.172 239 26 9 3 223 370252457 370252220 2.730000e-39 174.0
10 TraesCS3B01G239300 chr3A 92.727 110 8 0 746 855 370251824 370251715 7.660000e-35 159.0
11 TraesCS3B01G239300 chr3A 74.324 222 46 10 3738 3953 125425720 125425936 4.740000e-12 84.2
12 TraesCS3B01G239300 chr3D 96.021 2061 53 15 746 2779 283328115 283326057 0.000000e+00 3325.0
13 TraesCS3B01G239300 chr3D 90.890 1921 66 40 5511 7355 283320148 283318261 0.000000e+00 2477.0
14 TraesCS3B01G239300 chr3D 93.196 1161 42 12 3958 5097 283325290 283324146 0.000000e+00 1672.0
15 TraesCS3B01G239300 chr3D 84.188 1151 145 23 4337 5464 496780421 496779285 0.000000e+00 1083.0
16 TraesCS3B01G239300 chr3D 94.842 698 19 3 2780 3470 283325975 283325288 0.000000e+00 1074.0
17 TraesCS3B01G239300 chr3D 89.847 522 27 4 1 499 283334482 283333964 0.000000e+00 647.0
18 TraesCS3B01G239300 chr3D 91.716 169 13 1 3473 3640 512950735 512950567 4.450000e-57 233.0
19 TraesCS3B01G239300 chr3D 85.417 192 21 4 565 750 193434146 193433956 7.550000e-45 193.0
20 TraesCS3B01G239300 chr3D 95.000 80 2 1 486 563 283328208 283328129 2.790000e-24 124.0
21 TraesCS3B01G239300 chr1A 84.481 1147 140 25 4342 5464 464809065 464807933 0.000000e+00 1098.0
22 TraesCS3B01G239300 chr1A 84.059 1148 148 23 4340 5464 127703757 127704892 0.000000e+00 1074.0
23 TraesCS3B01G239300 chr1A 90.631 491 43 1 3472 3962 535452098 535451611 0.000000e+00 649.0
24 TraesCS3B01G239300 chr1A 93.529 170 10 1 3473 3641 39192821 39192652 1.230000e-62 252.0
25 TraesCS3B01G239300 chr7A 84.302 1153 146 21 4332 5464 118150740 118151877 0.000000e+00 1094.0
26 TraesCS3B01G239300 chr7A 74.877 203 41 10 3756 3953 457691239 457691436 4.740000e-12 84.2
27 TraesCS3B01G239300 chr6D 84.083 1156 145 22 4336 5464 160204387 160205530 0.000000e+00 1079.0
28 TraesCS3B01G239300 chr6A 84.101 1151 148 20 4337 5464 58015248 58016386 0.000000e+00 1079.0
29 TraesCS3B01G239300 chr2A 84.271 1138 144 21 4350 5464 421219279 421218154 0.000000e+00 1077.0
30 TraesCS3B01G239300 chr2A 91.279 172 14 1 3472 3642 562721790 562721619 4.450000e-57 233.0
31 TraesCS3B01G239300 chr4D 83.701 1178 148 25 4316 5464 242938997 242937835 0.000000e+00 1072.0
32 TraesCS3B01G239300 chr4D 86.979 192 19 2 565 750 241180240 241180431 2.080000e-50 211.0
33 TraesCS3B01G239300 chr2B 98.387 186 3 0 564 749 391101398 391101583 1.980000e-85 327.0
34 TraesCS3B01G239300 chr2B 96.000 175 6 1 3779 3953 134711282 134711455 4.360000e-72 283.0
35 TraesCS3B01G239300 chr2B 93.956 182 11 0 3598 3779 134708688 134708869 7.290000e-70 276.0
36 TraesCS3B01G239300 chr2B 91.954 174 13 1 3472 3644 384392156 384391983 7.390000e-60 243.0
37 TraesCS3B01G239300 chr2B 86.620 142 19 0 562 703 357439939 357440080 2.750000e-34 158.0
38 TraesCS3B01G239300 chr2B 85.906 149 19 1 562 710 357647271 357647417 2.750000e-34 158.0
39 TraesCS3B01G239300 chr2B 85.235 149 22 0 562 710 357578971 357578823 3.560000e-33 154.0
40 TraesCS3B01G239300 chr2B 94.681 94 5 0 3467 3560 134708595 134708688 5.960000e-31 147.0
41 TraesCS3B01G239300 chr2B 88.889 90 8 2 135 223 550727446 550727534 7.820000e-20 110.0
42 TraesCS3B01G239300 chr7B 96.133 181 7 0 564 744 325567771 325567951 5.590000e-76 296.0
43 TraesCS3B01G239300 chr7D 94.767 172 8 1 3472 3642 151509233 151509404 4.390000e-67 267.0
44 TraesCS3B01G239300 chr5D 93.529 170 10 1 3474 3642 495303974 495303805 1.230000e-62 252.0
45 TraesCS3B01G239300 chrUn 86.395 147 20 0 564 710 171063134 171063280 2.130000e-35 161.0
46 TraesCS3B01G239300 chr5B 87.143 140 18 0 570 709 34126871 34126732 7.660000e-35 159.0
47 TraesCS3B01G239300 chr5B 82.895 76 7 2 681 750 446668030 446668105 6.180000e-06 63.9
48 TraesCS3B01G239300 chr4B 81.746 126 13 6 99 223 549147986 549147870 6.090000e-16 97.1
49 TraesCS3B01G239300 chr4A 73.874 222 47 10 3738 3953 30563722 30563506 2.210000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G239300 chr3B 377426243 377433616 7373 True 13618.000000 13618 100.000000 1 7374 1 chr3B.!!$R2 7373
1 TraesCS3B01G239300 chr3A 370242673 370252457 9784 True 1230.500000 4301 91.455375 3 7247 8 chr3A.!!$R2 7244
2 TraesCS3B01G239300 chr3D 283318261 283328208 9947 True 1734.400000 3325 93.989800 486 7355 5 chr3D.!!$R5 6869
3 TraesCS3B01G239300 chr3D 496779285 496780421 1136 True 1083.000000 1083 84.188000 4337 5464 1 chr3D.!!$R3 1127
4 TraesCS3B01G239300 chr3D 283333964 283334482 518 True 647.000000 647 89.847000 1 499 1 chr3D.!!$R2 498
5 TraesCS3B01G239300 chr1A 464807933 464809065 1132 True 1098.000000 1098 84.481000 4342 5464 1 chr1A.!!$R2 1122
6 TraesCS3B01G239300 chr1A 127703757 127704892 1135 False 1074.000000 1074 84.059000 4340 5464 1 chr1A.!!$F1 1124
7 TraesCS3B01G239300 chr7A 118150740 118151877 1137 False 1094.000000 1094 84.302000 4332 5464 1 chr7A.!!$F1 1132
8 TraesCS3B01G239300 chr6D 160204387 160205530 1143 False 1079.000000 1079 84.083000 4336 5464 1 chr6D.!!$F1 1128
9 TraesCS3B01G239300 chr6A 58015248 58016386 1138 False 1079.000000 1079 84.101000 4337 5464 1 chr6A.!!$F1 1127
10 TraesCS3B01G239300 chr2A 421218154 421219279 1125 True 1077.000000 1077 84.271000 4350 5464 1 chr2A.!!$R1 1114
11 TraesCS3B01G239300 chr4D 242937835 242938997 1162 True 1072.000000 1072 83.701000 4316 5464 1 chr4D.!!$R1 1148
12 TraesCS3B01G239300 chr2B 134708595 134711455 2860 False 235.333333 283 94.879000 3467 3953 3 chr2B.!!$F5 486

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
39 40 1.094073 ACGCTAGTACGACGAGGCAT 61.094 55.000 0.00 0.0 36.70 4.40 F
618 699 1.129998 ACTATCTCAACGACCGTGACG 59.870 52.381 0.00 0.0 0.00 4.35 F
1476 2578 0.888619 TCGCTGACGAGTTCCATTCT 59.111 50.000 0.00 0.0 45.12 2.40 F
3123 4310 1.067295 TGGCCATTCTCCAGTTCAGT 58.933 50.000 0.00 0.0 0.00 3.41 F
3506 4700 0.036875 CTCCTCCCAACTCCACCAAC 59.963 60.000 0.00 0.0 0.00 3.77 F
3565 4759 0.161870 GCAGCGAGACAACTTCGTTC 59.838 55.000 0.00 0.0 0.00 3.95 F
3954 7561 0.250513 GAGAATCAGAACAGGCCCGT 59.749 55.000 0.00 0.0 33.17 5.28 F
5507 11099 0.117340 AGTTGGAGAGGGCCTACAGT 59.883 55.000 5.73 0.0 36.98 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1476 2578 3.056107 CCCTGTGATTAAACCTCAGACGA 60.056 47.826 10.16 0.00 0.00 4.20 R
2342 3447 2.260869 CCGCCAGTTGGACAAGGTG 61.261 63.158 1.45 0.00 37.39 4.00 R
3471 4665 1.292242 AGGAGATCAGAACAGGCCCTA 59.708 52.381 0.00 0.00 0.00 3.53 R
4232 8127 0.036388 CGACACATGGTAACCCTGCT 60.036 55.000 0.00 0.00 0.00 4.24 R
5150 10730 0.101759 GGTGCTAGTCGACGGCAATA 59.898 55.000 29.97 13.43 37.73 1.90 R
5488 11080 0.117340 ACTGTAGGCCCTCTCCAACT 59.883 55.000 0.00 0.00 0.00 3.16 R
5937 13870 2.159310 AGCTGACACGTAGAAGAGATGC 60.159 50.000 0.00 0.00 0.00 3.91 R
7312 15533 0.324368 ACCGATGGACAGAGGTGCTA 60.324 55.000 1.46 0.00 36.16 3.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 1.094073 ACGCTAGTACGACGAGGCAT 61.094 55.000 0.00 0.00 36.70 4.40
42 43 1.267261 GCTAGTACGACGAGGCATGAT 59.733 52.381 0.00 0.00 0.00 2.45
65 66 1.920835 GGGACAGGAGGGCAGAGTT 60.921 63.158 0.00 0.00 0.00 3.01
168 186 2.592993 CGGGAGGAAGGCAGTTGGA 61.593 63.158 0.00 0.00 0.00 3.53
256 329 2.375014 TTTGTCAGGGAGGGGTTTTC 57.625 50.000 0.00 0.00 0.00 2.29
271 344 1.203994 GTTTTCGGGTCTCGGAGATGA 59.796 52.381 11.46 7.17 39.77 2.92
356 429 6.382859 TCCAAATAGTGTTGCTATGAGGAGTA 59.617 38.462 0.00 0.00 40.12 2.59
573 654 8.919145 AGAGGTCTCAAAATAACGATCTATCTT 58.081 33.333 0.00 0.00 0.00 2.40
574 655 8.879342 AGGTCTCAAAATAACGATCTATCTTG 57.121 34.615 0.00 0.00 0.00 3.02
575 656 7.928706 AGGTCTCAAAATAACGATCTATCTTGG 59.071 37.037 0.00 0.00 0.00 3.61
576 657 7.926555 GGTCTCAAAATAACGATCTATCTTGGA 59.073 37.037 0.00 0.00 0.00 3.53
577 658 9.314321 GTCTCAAAATAACGATCTATCTTGGAA 57.686 33.333 0.00 0.00 0.00 3.53
580 661 9.056005 TCAAAATAACGATCTATCTTGGAATGG 57.944 33.333 0.00 0.00 0.00 3.16
581 662 7.986085 AAATAACGATCTATCTTGGAATGGG 57.014 36.000 0.00 0.00 0.00 4.00
582 663 6.935240 ATAACGATCTATCTTGGAATGGGA 57.065 37.500 0.00 0.00 0.00 4.37
583 664 5.832539 AACGATCTATCTTGGAATGGGAT 57.167 39.130 0.00 0.00 0.00 3.85
584 665 5.413309 ACGATCTATCTTGGAATGGGATC 57.587 43.478 0.00 0.00 0.00 3.36
585 666 5.090139 ACGATCTATCTTGGAATGGGATCT 58.910 41.667 0.00 0.00 0.00 2.75
586 667 5.186797 ACGATCTATCTTGGAATGGGATCTC 59.813 44.000 0.00 0.00 0.00 2.75
587 668 5.659463 GATCTATCTTGGAATGGGATCTCG 58.341 45.833 0.00 0.00 0.00 4.04
588 669 4.740902 TCTATCTTGGAATGGGATCTCGA 58.259 43.478 0.00 0.00 0.00 4.04
589 670 5.336945 TCTATCTTGGAATGGGATCTCGAT 58.663 41.667 0.00 0.00 0.00 3.59
590 671 3.758755 TCTTGGAATGGGATCTCGATG 57.241 47.619 0.00 0.00 0.00 3.84
591 672 2.369860 TCTTGGAATGGGATCTCGATGG 59.630 50.000 0.00 0.00 0.00 3.51
592 673 1.806496 TGGAATGGGATCTCGATGGT 58.194 50.000 0.00 0.00 0.00 3.55
593 674 2.970987 TGGAATGGGATCTCGATGGTA 58.029 47.619 0.00 0.00 0.00 3.25
594 675 3.520696 TGGAATGGGATCTCGATGGTAT 58.479 45.455 0.00 0.00 0.00 2.73
595 676 3.515502 TGGAATGGGATCTCGATGGTATC 59.484 47.826 0.00 0.00 0.00 2.24
610 691 5.998553 GATGGTATCGAACTATCTCAACGA 58.001 41.667 13.11 0.00 41.57 3.85
611 692 5.165911 TGGTATCGAACTATCTCAACGAC 57.834 43.478 0.00 0.00 35.91 4.34
612 693 4.036027 TGGTATCGAACTATCTCAACGACC 59.964 45.833 0.00 0.00 35.91 4.79
613 694 2.819422 TCGAACTATCTCAACGACCG 57.181 50.000 0.00 0.00 0.00 4.79
614 695 2.079158 TCGAACTATCTCAACGACCGT 58.921 47.619 0.00 0.00 0.00 4.83
615 696 2.159612 TCGAACTATCTCAACGACCGTG 60.160 50.000 0.00 0.00 0.00 4.94
616 697 2.159612 CGAACTATCTCAACGACCGTGA 60.160 50.000 0.00 0.00 0.00 4.35
617 698 2.915738 ACTATCTCAACGACCGTGAC 57.084 50.000 0.00 0.00 0.00 3.67
618 699 1.129998 ACTATCTCAACGACCGTGACG 59.870 52.381 0.00 0.00 0.00 4.35
633 714 4.294416 CGTGACGGATTGAGAAGTATCT 57.706 45.455 0.00 0.00 39.10 1.98
634 715 5.419760 CGTGACGGATTGAGAAGTATCTA 57.580 43.478 0.00 0.00 35.54 1.98
635 716 5.817988 CGTGACGGATTGAGAAGTATCTAA 58.182 41.667 0.00 0.00 35.54 2.10
636 717 6.263344 CGTGACGGATTGAGAAGTATCTAAA 58.737 40.000 0.00 0.00 35.54 1.85
637 718 6.918569 CGTGACGGATTGAGAAGTATCTAAAT 59.081 38.462 0.00 0.00 39.14 1.40
638 719 7.113684 CGTGACGGATTGAGAAGTATCTAAATC 59.886 40.741 0.00 7.21 46.65 2.17
661 742 7.912056 TCAGATCAATAATACCAATAGCAGC 57.088 36.000 0.00 0.00 0.00 5.25
662 743 7.683578 TCAGATCAATAATACCAATAGCAGCT 58.316 34.615 0.00 0.00 0.00 4.24
663 744 8.159447 TCAGATCAATAATACCAATAGCAGCTT 58.841 33.333 0.00 0.00 0.00 3.74
664 745 8.449397 CAGATCAATAATACCAATAGCAGCTTC 58.551 37.037 0.00 0.00 0.00 3.86
665 746 8.381636 AGATCAATAATACCAATAGCAGCTTCT 58.618 33.333 0.00 0.00 0.00 2.85
666 747 7.734924 TCAATAATACCAATAGCAGCTTCTG 57.265 36.000 0.00 0.00 34.12 3.02
667 748 6.712095 TCAATAATACCAATAGCAGCTTCTGG 59.288 38.462 17.27 17.27 31.21 3.86
668 749 2.332063 TACCAATAGCAGCTTCTGGC 57.668 50.000 18.35 0.00 42.19 4.85
680 761 2.622436 GCTTCTGGCTACTGGTAGTTG 58.378 52.381 9.16 0.00 38.06 3.16
681 762 2.233922 GCTTCTGGCTACTGGTAGTTGA 59.766 50.000 9.16 3.54 38.06 3.18
682 763 3.118592 GCTTCTGGCTACTGGTAGTTGAT 60.119 47.826 9.16 0.00 38.06 2.57
683 764 4.688021 CTTCTGGCTACTGGTAGTTGATC 58.312 47.826 9.16 0.00 35.65 2.92
684 765 3.708451 TCTGGCTACTGGTAGTTGATCA 58.292 45.455 9.16 0.00 35.65 2.92
685 766 4.093743 TCTGGCTACTGGTAGTTGATCAA 58.906 43.478 3.38 3.38 35.65 2.57
686 767 4.081642 TCTGGCTACTGGTAGTTGATCAAC 60.082 45.833 27.69 27.69 41.45 3.18
701 782 7.694388 GTTGATCAACTAACCAAACTTTTCC 57.306 36.000 27.66 0.00 38.25 3.13
702 783 6.399639 TGATCAACTAACCAAACTTTTCCC 57.600 37.500 0.00 0.00 0.00 3.97
703 784 5.894393 TGATCAACTAACCAAACTTTTCCCA 59.106 36.000 0.00 0.00 0.00 4.37
704 785 6.553100 TGATCAACTAACCAAACTTTTCCCAT 59.447 34.615 0.00 0.00 0.00 4.00
705 786 7.726291 TGATCAACTAACCAAACTTTTCCCATA 59.274 33.333 0.00 0.00 0.00 2.74
706 787 7.899648 TCAACTAACCAAACTTTTCCCATAA 57.100 32.000 0.00 0.00 0.00 1.90
707 788 8.307582 TCAACTAACCAAACTTTTCCCATAAA 57.692 30.769 0.00 0.00 0.00 1.40
708 789 8.929487 TCAACTAACCAAACTTTTCCCATAAAT 58.071 29.630 0.00 0.00 0.00 1.40
709 790 9.203421 CAACTAACCAAACTTTTCCCATAAATC 57.797 33.333 0.00 0.00 0.00 2.17
710 791 8.721133 ACTAACCAAACTTTTCCCATAAATCT 57.279 30.769 0.00 0.00 0.00 2.40
711 792 9.154632 ACTAACCAAACTTTTCCCATAAATCTT 57.845 29.630 0.00 0.00 0.00 2.40
712 793 9.639601 CTAACCAAACTTTTCCCATAAATCTTC 57.360 33.333 0.00 0.00 0.00 2.87
713 794 7.004555 ACCAAACTTTTCCCATAAATCTTCC 57.995 36.000 0.00 0.00 0.00 3.46
714 795 6.787458 ACCAAACTTTTCCCATAAATCTTCCT 59.213 34.615 0.00 0.00 0.00 3.36
715 796 7.039011 ACCAAACTTTTCCCATAAATCTTCCTC 60.039 37.037 0.00 0.00 0.00 3.71
716 797 7.039082 CCAAACTTTTCCCATAAATCTTCCTCA 60.039 37.037 0.00 0.00 0.00 3.86
717 798 8.367156 CAAACTTTTCCCATAAATCTTCCTCAA 58.633 33.333 0.00 0.00 0.00 3.02
718 799 8.670521 AACTTTTCCCATAAATCTTCCTCAAT 57.329 30.769 0.00 0.00 0.00 2.57
719 800 9.768215 AACTTTTCCCATAAATCTTCCTCAATA 57.232 29.630 0.00 0.00 0.00 1.90
720 801 9.942526 ACTTTTCCCATAAATCTTCCTCAATAT 57.057 29.630 0.00 0.00 0.00 1.28
722 803 9.934784 TTTTCCCATAAATCTTCCTCAATATGA 57.065 29.630 0.00 0.00 0.00 2.15
723 804 9.934784 TTTCCCATAAATCTTCCTCAATATGAA 57.065 29.630 0.00 0.00 0.00 2.57
724 805 9.934784 TTCCCATAAATCTTCCTCAATATGAAA 57.065 29.630 0.00 0.00 0.00 2.69
725 806 9.934784 TCCCATAAATCTTCCTCAATATGAAAA 57.065 29.630 0.00 0.00 0.00 2.29
1053 2138 1.943730 AAGGGAAGGTGGTGGTGCAA 61.944 55.000 0.00 0.00 0.00 4.08
1272 2357 5.670792 TGATGTAGGTTTACTGATTCCGT 57.329 39.130 0.00 0.00 0.00 4.69
1338 2423 8.337532 TGCATCAAATTAATGATTAGTGTCTCG 58.662 33.333 5.21 0.00 37.96 4.04
1404 2506 2.422945 GGGGTGTTCTGAACTGAACCTT 60.423 50.000 21.02 0.00 43.96 3.50
1476 2578 0.888619 TCGCTGACGAGTTCCATTCT 59.111 50.000 0.00 0.00 45.12 2.40
1612 2714 9.374711 AGAAGAATACAATTTTTGGGAAGGTAA 57.625 29.630 0.00 0.00 34.12 2.85
1824 2928 3.838244 AGTTCTGGTACTTCTGCAACA 57.162 42.857 0.00 0.00 0.00 3.33
1877 2982 5.011738 ACTTGTGAAGCCTAAGTAGCTGTTA 59.988 40.000 0.00 0.00 40.49 2.41
1958 3063 6.202954 AGTTCCACGACAACTTAAGAAGATTG 59.797 38.462 10.09 5.76 29.29 2.67
2198 3303 3.895232 AAGAGTATCCACGATGTGCTT 57.105 42.857 0.00 0.00 33.66 3.91
2274 3379 3.969117 TCAATTGTGTCACTTGTGCTC 57.031 42.857 5.13 0.00 0.00 4.26
2342 3447 9.774742 CATATTGCACTAGAAAAACCTAAAGAC 57.225 33.333 0.00 0.00 0.00 3.01
2421 3526 5.643348 TGTTAGTGTGCATACCATCTGAAAG 59.357 40.000 10.29 0.00 0.00 2.62
2478 3583 9.878599 CGTCAACTTTATTCTTTTGACTTGTAT 57.121 29.630 10.61 0.00 43.72 2.29
2508 3613 1.699083 TCATGCTTCCTCACTGGTTCA 59.301 47.619 0.00 0.00 37.07 3.18
2509 3614 2.306805 TCATGCTTCCTCACTGGTTCAT 59.693 45.455 0.00 0.00 37.07 2.57
2735 3842 8.410141 ACATTTTTCGTCTTGAATTGGTTTAGA 58.590 29.630 0.00 0.00 36.22 2.10
3051 4238 3.574396 CGTAGAGAGCTTGGGGATATTCA 59.426 47.826 0.00 0.00 0.00 2.57
3123 4310 1.067295 TGGCCATTCTCCAGTTCAGT 58.933 50.000 0.00 0.00 0.00 3.41
3184 4378 7.227512 AGGATTATGTAACAGCTACTTGCATTC 59.772 37.037 10.78 5.41 45.94 2.67
3191 4385 3.891366 ACAGCTACTTGCATTCTTTTGGT 59.109 39.130 0.00 0.00 45.94 3.67
3231 4425 6.208402 TGCTGCATATAAGTTGGAAAACTGAA 59.792 34.615 0.00 0.00 32.47 3.02
3356 4550 8.437274 TCTATATGTTCCTTATCCTTCTTCCC 57.563 38.462 0.00 0.00 0.00 3.97
3420 4614 8.380099 AGTTTAGTTCAATGTGGTAGGTTATCA 58.620 33.333 0.00 0.00 0.00 2.15
3494 4688 0.467804 GCCTGTTCTGATCTCCTCCC 59.532 60.000 0.00 0.00 0.00 4.30
3506 4700 0.036875 CTCCTCCCAACTCCACCAAC 59.963 60.000 0.00 0.00 0.00 3.77
3528 4722 1.303309 CACGATTCCAGCTTCCCATC 58.697 55.000 0.00 0.00 0.00 3.51
3559 4753 2.356313 CCACGCAGCGAGACAACT 60.356 61.111 24.65 0.00 0.00 3.16
3560 4754 1.956170 CCACGCAGCGAGACAACTT 60.956 57.895 24.65 0.00 0.00 2.66
3561 4755 1.488957 CACGCAGCGAGACAACTTC 59.511 57.895 24.65 0.00 0.00 3.01
3562 4756 2.016704 ACGCAGCGAGACAACTTCG 61.017 57.895 24.65 0.00 0.00 3.79
3563 4757 2.016704 CGCAGCGAGACAACTTCGT 61.017 57.895 9.98 0.00 0.00 3.85
3564 4758 1.548973 CGCAGCGAGACAACTTCGTT 61.549 55.000 9.98 0.00 0.00 3.85
3565 4759 0.161870 GCAGCGAGACAACTTCGTTC 59.838 55.000 0.00 0.00 0.00 3.95
3566 4760 0.431233 CAGCGAGACAACTTCGTTCG 59.569 55.000 0.00 0.00 0.00 3.95
3567 4761 0.663568 AGCGAGACAACTTCGTTCGG 60.664 55.000 0.00 0.00 0.00 4.30
3568 4762 1.773496 CGAGACAACTTCGTTCGGC 59.227 57.895 0.00 0.00 0.00 5.54
3569 4763 0.937699 CGAGACAACTTCGTTCGGCA 60.938 55.000 0.00 0.00 0.00 5.69
3570 4764 0.784778 GAGACAACTTCGTTCGGCAG 59.215 55.000 0.00 0.00 0.00 4.85
3571 4765 1.204312 GACAACTTCGTTCGGCAGC 59.796 57.895 0.00 0.00 0.00 5.25
3572 4766 2.170985 CAACTTCGTTCGGCAGCG 59.829 61.111 0.00 0.00 0.00 5.18
3573 4767 2.028484 AACTTCGTTCGGCAGCGA 59.972 55.556 0.00 0.00 35.17 4.93
3574 4768 2.308039 AACTTCGTTCGGCAGCGAC 61.308 57.895 0.00 0.00 36.82 5.19
3575 4769 3.479269 CTTCGTTCGGCAGCGACC 61.479 66.667 0.00 0.00 36.82 4.79
3588 4782 4.821589 CGACCGCTGGCTTCTCCC 62.822 72.222 0.00 0.00 0.00 4.30
3589 4783 3.706373 GACCGCTGGCTTCTCCCA 61.706 66.667 0.00 0.00 0.00 4.37
3590 4784 3.011517 ACCGCTGGCTTCTCCCAT 61.012 61.111 0.00 0.00 33.64 4.00
3591 4785 2.203126 CCGCTGGCTTCTCCCATC 60.203 66.667 0.00 0.00 33.64 3.51
3592 4786 2.587194 CGCTGGCTTCTCCCATCG 60.587 66.667 0.00 0.00 38.03 3.84
3593 4787 2.899339 GCTGGCTTCTCCCATCGC 60.899 66.667 0.00 0.00 33.64 4.58
3594 4788 2.203126 CTGGCTTCTCCCATCGCC 60.203 66.667 0.00 0.00 42.78 5.54
3596 4790 2.203126 GGCTTCTCCCATCGCCAG 60.203 66.667 0.00 0.00 42.06 4.85
3612 4806 2.030551 CAGTATGGGCTGCAGCATG 58.969 57.895 37.63 21.35 44.36 4.06
3634 4828 2.111043 GCCTGCCTTAGCGCCATA 59.889 61.111 2.29 0.00 44.31 2.74
3703 4897 2.418628 AGCGAATCGTTATGTTTGGTGG 59.581 45.455 4.07 0.00 0.00 4.61
3733 4927 0.381428 GCGAATCGTTATGTTCGGCG 60.381 55.000 4.07 0.00 45.28 6.46
3741 4935 2.587322 TTATGTTCGGCGGCCAGGAG 62.587 60.000 20.71 2.16 0.00 3.69
3748 4942 2.892425 GCGGCCAGGAGTGAATCG 60.892 66.667 2.24 0.00 0.00 3.34
3752 4946 1.653151 GGCCAGGAGTGAATCGTTAC 58.347 55.000 0.00 0.00 0.00 2.50
3765 4959 2.951458 GTTACACTTGGCGGTGGC 59.049 61.111 13.44 2.24 41.09 5.01
3791 7398 3.994392 TCAGGTGTAATTTGAGCGAACTC 59.006 43.478 0.00 0.00 43.76 3.01
3792 7399 3.125316 CAGGTGTAATTTGAGCGAACTCC 59.875 47.826 0.00 0.00 42.74 3.85
3800 7407 2.831685 TGAGCGAACTCCAGCTTTTA 57.168 45.000 0.00 0.00 44.69 1.52
3879 7486 0.388649 CCGAGAAGTTCACTCCGTGG 60.389 60.000 5.50 0.00 33.87 4.94
3893 7500 2.811317 GTGGAGCTCAGGCGTTCG 60.811 66.667 17.19 0.00 44.37 3.95
3931 7538 3.117888 TGGAGTTTTTGGAGTTGAGAGCT 60.118 43.478 0.00 0.00 0.00 4.09
3953 7560 0.539051 AGAGAATCAGAACAGGCCCG 59.461 55.000 0.00 0.00 37.82 6.13
3954 7561 0.250513 GAGAATCAGAACAGGCCCGT 59.749 55.000 0.00 0.00 33.17 5.28
3955 7562 1.480954 GAGAATCAGAACAGGCCCGTA 59.519 52.381 0.00 0.00 33.17 4.02
3956 7563 1.482593 AGAATCAGAACAGGCCCGTAG 59.517 52.381 0.00 0.00 0.00 3.51
4232 8127 5.897050 GTGTGGTCACAATTTTTCTTGGTA 58.103 37.500 5.28 0.00 43.77 3.25
4233 8128 5.977129 GTGTGGTCACAATTTTTCTTGGTAG 59.023 40.000 5.28 0.00 43.77 3.18
4234 8129 4.982295 GTGGTCACAATTTTTCTTGGTAGC 59.018 41.667 0.00 0.00 0.00 3.58
4324 8219 3.632145 GGAAGAATGGTCTTGTGTGTGTT 59.368 43.478 0.00 0.00 44.42 3.32
4354 8250 5.116983 GTCTGAACAACAACAACAACAACAG 59.883 40.000 0.00 0.00 0.00 3.16
4442 8338 7.661847 AGATTTCGAAACTTGGTCATAGTTCTT 59.338 33.333 13.81 0.00 34.88 2.52
4481 8378 1.075601 AACACATCCCTGTCCATGGT 58.924 50.000 12.58 0.00 31.62 3.55
4524 8421 3.764434 AGTCCTTCAGATCTCGCTTTACA 59.236 43.478 0.00 0.00 0.00 2.41
4673 8591 5.126869 TGTTGGACAAGCTTCTTTTCAATCA 59.873 36.000 0.00 0.00 0.00 2.57
4760 8678 5.012239 GGCCACATATCCATATCAACATGT 58.988 41.667 0.00 0.00 0.00 3.21
4807 8728 2.419324 GACATGTCGTCTTCTAGTCGGT 59.581 50.000 10.69 0.00 41.81 4.69
4813 8734 2.483106 TCGTCTTCTAGTCGGTGAACAG 59.517 50.000 0.00 0.00 0.00 3.16
4860 8781 1.673808 ATCGCCGTCCTGTAGAACCC 61.674 60.000 0.00 0.00 0.00 4.11
4861 8782 2.348888 CGCCGTCCTGTAGAACCCT 61.349 63.158 0.00 0.00 0.00 4.34
4913 8834 2.017559 GAGGACGCCATAAGCTCGGT 62.018 60.000 0.00 0.00 40.39 4.69
4924 8846 3.474570 GCTCGGTGCCCCTCATCT 61.475 66.667 0.00 0.00 35.15 2.90
5099 10676 8.741841 CAGTTTTAGTTCTACTAGCCTAAGACT 58.258 37.037 10.01 10.01 36.08 3.24
5155 10735 8.410912 ACTTTCTATTAATCCCCGTTTTATTGC 58.589 33.333 0.00 0.00 0.00 3.56
5267 10848 7.588497 AAGCAAAAAGATAAGGACTCAAAGT 57.412 32.000 0.00 0.00 0.00 2.66
5293 10876 7.874358 GACCCTTGGTGCAGTCCTATTACTG 62.874 52.000 0.00 0.00 42.29 2.74
5358 10942 8.646900 TGTCATAGCATTATTGTACATGTCCTA 58.353 33.333 0.00 0.00 0.00 2.94
5387 10971 4.698780 GGGTAATGTACTTTGTTGGGACTC 59.301 45.833 4.33 0.00 0.00 3.36
5433 11017 2.691526 TGACATTCCGCGGTATCTTACT 59.308 45.455 27.15 0.00 0.00 2.24
5452 11036 0.970937 TGTAGGCCCTCTCCAAGTCG 60.971 60.000 0.00 0.00 0.00 4.18
5464 11048 3.007940 TCTCCAAGTCGATGAACACCATT 59.992 43.478 0.00 0.00 35.17 3.16
5465 11049 3.334691 TCCAAGTCGATGAACACCATTC 58.665 45.455 0.00 0.00 35.17 2.67
5466 11050 3.007940 TCCAAGTCGATGAACACCATTCT 59.992 43.478 0.00 0.00 35.17 2.40
5475 11067 6.485313 TCGATGAACACCATTCTTAAGTTGTT 59.515 34.615 1.63 5.79 35.17 2.83
5481 11073 7.046292 ACACCATTCTTAAGTTGTTTTACCC 57.954 36.000 1.63 0.00 0.00 3.69
5483 11075 6.921307 CACCATTCTTAAGTTGTTTTACCCAC 59.079 38.462 1.63 0.00 0.00 4.61
5485 11077 7.289084 ACCATTCTTAAGTTGTTTTACCCACAT 59.711 33.333 1.63 0.00 0.00 3.21
5486 11078 7.598493 CCATTCTTAAGTTGTTTTACCCACATG 59.402 37.037 1.63 0.00 0.00 3.21
5488 11080 7.883391 TCTTAAGTTGTTTTACCCACATGAA 57.117 32.000 0.00 0.00 0.00 2.57
5490 11082 7.558444 TCTTAAGTTGTTTTACCCACATGAAGT 59.442 33.333 0.00 0.00 0.00 3.01
5491 11083 6.538945 AAGTTGTTTTACCCACATGAAGTT 57.461 33.333 0.00 0.00 0.00 2.66
5492 11084 5.901552 AGTTGTTTTACCCACATGAAGTTG 58.098 37.500 0.00 0.00 0.00 3.16
5493 11085 4.927978 TGTTTTACCCACATGAAGTTGG 57.072 40.909 0.00 0.00 38.94 3.77
5494 11086 4.537751 TGTTTTACCCACATGAAGTTGGA 58.462 39.130 0.00 0.00 36.54 3.53
5495 11087 4.582656 TGTTTTACCCACATGAAGTTGGAG 59.417 41.667 0.00 0.00 36.54 3.86
5497 11089 2.867109 ACCCACATGAAGTTGGAGAG 57.133 50.000 0.00 0.00 36.54 3.20
5500 11092 1.457346 CACATGAAGTTGGAGAGGGC 58.543 55.000 0.00 0.00 0.00 5.19
5502 11094 0.622665 CATGAAGTTGGAGAGGGCCT 59.377 55.000 5.25 5.25 0.00 5.19
5505 11097 1.276622 GAAGTTGGAGAGGGCCTACA 58.723 55.000 5.73 2.99 36.34 2.74
5506 11098 1.208293 GAAGTTGGAGAGGGCCTACAG 59.792 57.143 5.73 0.00 36.98 2.74
5507 11099 0.117340 AGTTGGAGAGGGCCTACAGT 59.883 55.000 5.73 0.00 36.98 3.55
5508 11100 1.361543 AGTTGGAGAGGGCCTACAGTA 59.638 52.381 5.73 0.00 36.98 2.74
5509 11101 2.185387 GTTGGAGAGGGCCTACAGTAA 58.815 52.381 5.73 0.00 36.98 2.24
5522 13451 5.438117 GCCTACAGTAAAAACACTTCGAAC 58.562 41.667 0.00 0.00 0.00 3.95
5532 13461 3.879932 ACACTTCGAACTTTAAGCAGC 57.120 42.857 0.00 0.00 0.00 5.25
5580 13509 7.062255 GCAGTTGCTCCTGATTTTATTAACAAC 59.938 37.037 7.29 0.00 38.21 3.32
5585 13514 9.237187 TGCTCCTGATTTTATTAACAACATGTA 57.763 29.630 0.00 0.00 0.00 2.29
5672 13605 4.432712 ACAACGATGATGATGATGACGAA 58.567 39.130 0.00 0.00 0.00 3.85
5673 13606 4.505556 ACAACGATGATGATGATGACGAAG 59.494 41.667 0.00 0.00 0.00 3.79
5674 13607 4.574599 ACGATGATGATGATGACGAAGA 57.425 40.909 0.00 0.00 0.00 2.87
5875 13808 7.770897 TGAAGAGGAGGTATTATTTTTCTGCTC 59.229 37.037 0.00 0.00 41.27 4.26
5895 13828 3.578716 CTCTCTTGTGTCCACCTTCCTTA 59.421 47.826 0.00 0.00 0.00 2.69
5937 13870 4.011966 TGCATACTCATATTCCAGCTGG 57.988 45.455 27.87 27.87 0.00 4.85
5963 13896 4.051922 CTCTTCTACGTGTCAGCTTTTGT 58.948 43.478 0.00 0.00 0.00 2.83
6079 14012 9.284968 GAGTAATAAGCCTGCTAATATGGAAAA 57.715 33.333 0.00 0.00 0.00 2.29
6404 14337 1.666189 GGTGCGTCTGCTAATCTTTCC 59.334 52.381 0.00 0.00 43.34 3.13
6461 14394 5.857268 ACAAATGCTTTGAGCCTTTTATGT 58.143 33.333 13.35 0.00 43.26 2.29
6462 14395 6.991938 ACAAATGCTTTGAGCCTTTTATGTA 58.008 32.000 13.35 0.00 43.26 2.29
6463 14396 7.092716 ACAAATGCTTTGAGCCTTTTATGTAG 58.907 34.615 13.35 0.00 43.26 2.74
6464 14397 4.701956 TGCTTTGAGCCTTTTATGTAGC 57.298 40.909 0.00 0.00 41.51 3.58
6477 14410 8.596380 GCCTTTTATGTAGCTAGCTTATTATCG 58.404 37.037 24.88 5.90 0.00 2.92
6502 14435 4.878971 ACCACATTGTAGCGTTGCAATATA 59.121 37.500 14.59 0.00 37.50 0.86
6616 14557 1.186917 TTTGCCCCCAGAGTTGCATG 61.187 55.000 0.00 0.00 33.08 4.06
6839 14780 3.612472 TTAACAAGGCAACGTTACTGC 57.388 42.857 0.00 0.17 46.39 4.40
6847 14788 2.031157 GGCAACGTTACTGCAACATCTT 60.031 45.455 12.42 0.00 41.78 2.40
6848 14789 3.226347 GCAACGTTACTGCAACATCTTC 58.774 45.455 0.00 0.00 39.69 2.87
6899 14842 6.367422 GCATTAGCCTATCATGTCAACTCTAC 59.633 42.308 0.00 0.00 33.58 2.59
7002 15178 2.045926 AGCCGTTGGATCCTGCAC 60.046 61.111 14.23 6.28 0.00 4.57
7119 15318 4.283403 GCAGCTTGCCGTTGCCAA 62.283 61.111 1.29 0.00 43.22 4.52
7128 15327 1.875963 CCGTTGCCAACCACTCATC 59.124 57.895 1.21 0.00 0.00 2.92
7129 15328 0.888736 CCGTTGCCAACCACTCATCA 60.889 55.000 1.21 0.00 0.00 3.07
7130 15329 0.518636 CGTTGCCAACCACTCATCAG 59.481 55.000 1.21 0.00 0.00 2.90
7131 15330 0.242017 GTTGCCAACCACTCATCAGC 59.758 55.000 0.00 0.00 0.00 4.26
7132 15331 1.236616 TTGCCAACCACTCATCAGCG 61.237 55.000 0.00 0.00 0.00 5.18
7133 15332 3.044059 GCCAACCACTCATCAGCGC 62.044 63.158 0.00 0.00 0.00 5.92
7134 15333 1.672030 CCAACCACTCATCAGCGCA 60.672 57.895 11.47 0.00 0.00 6.09
7135 15334 1.499056 CAACCACTCATCAGCGCAC 59.501 57.895 11.47 0.00 0.00 5.34
7136 15335 0.952497 CAACCACTCATCAGCGCACT 60.952 55.000 11.47 0.00 0.00 4.40
7137 15336 0.671781 AACCACTCATCAGCGCACTC 60.672 55.000 11.47 0.00 0.00 3.51
7138 15337 2.163390 CCACTCATCAGCGCACTCG 61.163 63.158 11.47 0.00 39.07 4.18
7166 15365 1.005630 GTCTCGTTGCTGCAGACCT 60.006 57.895 20.43 0.00 31.93 3.85
7167 15366 0.601311 GTCTCGTTGCTGCAGACCTT 60.601 55.000 20.43 0.00 31.93 3.50
7262 15469 2.887568 CAGCATCAGGTCGCCGTC 60.888 66.667 0.00 0.00 0.00 4.79
7296 15517 2.029844 GCTGGTTCACCGTCTCAGC 61.030 63.158 0.00 0.00 42.89 4.26
7320 15541 0.798771 CTCGCTCGTTGTAGCACCTC 60.799 60.000 0.00 0.00 42.91 3.85
7344 15565 0.533755 CATCGGTCCCAGCAATCCTC 60.534 60.000 0.00 0.00 0.00 3.71
7346 15567 2.514824 GGTCCCAGCAATCCTCGC 60.515 66.667 0.00 0.00 0.00 5.03
7351 15572 2.758089 CCAGCAATCCTCGCAGCAC 61.758 63.158 0.00 0.00 0.00 4.40
7355 15576 1.376424 CAATCCTCGCAGCACCTGT 60.376 57.895 0.00 0.00 33.43 4.00
7356 15577 1.376424 AATCCTCGCAGCACCTGTG 60.376 57.895 0.00 0.00 42.60 3.66
7357 15578 2.809861 AATCCTCGCAGCACCTGTGG 62.810 60.000 6.01 1.56 41.68 4.17
7358 15579 4.320456 CCTCGCAGCACCTGTGGT 62.320 66.667 6.01 0.00 41.68 4.16
7359 15580 2.281070 CTCGCAGCACCTGTGGTT 60.281 61.111 0.00 0.00 41.68 3.67
7360 15581 2.591429 TCGCAGCACCTGTGGTTG 60.591 61.111 0.00 0.00 41.68 3.77
7361 15582 4.332637 CGCAGCACCTGTGGTTGC 62.333 66.667 0.00 6.55 39.58 4.17
7362 15583 3.218470 GCAGCACCTGTGGTTGCA 61.218 61.111 14.52 0.00 39.58 4.08
7363 15584 3.036577 CAGCACCTGTGGTTGCAG 58.963 61.111 0.00 0.00 39.58 4.41
7364 15585 2.908940 AGCACCTGTGGTTGCAGC 60.909 61.111 0.00 0.00 38.24 5.25
7365 15586 4.332637 GCACCTGTGGTTGCAGCG 62.333 66.667 0.00 0.00 31.02 5.18
7366 15587 2.901840 CACCTGTGGTTGCAGCGT 60.902 61.111 0.00 0.00 31.02 5.07
7367 15588 2.591715 ACCTGTGGTTGCAGCGTC 60.592 61.111 0.00 0.00 35.28 5.19
7368 15589 3.357079 CCTGTGGTTGCAGCGTCC 61.357 66.667 0.00 0.00 35.28 4.79
7369 15590 3.357079 CTGTGGTTGCAGCGTCCC 61.357 66.667 0.00 0.00 0.00 4.46
7370 15591 4.182433 TGTGGTTGCAGCGTCCCA 62.182 61.111 0.00 0.00 0.00 4.37
7371 15592 2.904866 GTGGTTGCAGCGTCCCAA 60.905 61.111 0.00 0.00 0.00 4.12
7372 15593 2.904866 TGGTTGCAGCGTCCCAAC 60.905 61.111 0.00 5.89 40.34 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 1.251251 ACTAGCGTCGTTTGTACCCT 58.749 50.000 0.00 0.00 0.00 4.34
12 13 2.472235 CGTCGTACTAGCGTCGTTTGTA 60.472 50.000 0.00 0.00 38.25 2.41
39 40 1.997311 CCTCCTGTCCCCTGCATCA 60.997 63.158 0.00 0.00 0.00 3.07
45 46 3.615811 TCTGCCCTCCTGTCCCCT 61.616 66.667 0.00 0.00 0.00 4.79
101 102 2.148558 TTTGGCCCAAAATCGACGCC 62.149 55.000 6.40 0.00 40.16 5.68
142 160 3.775654 CTTCCTCCCGCTTCCGCT 61.776 66.667 0.00 0.00 0.00 5.52
225 298 5.163269 CCTCCCTGACAAATGATGTAGATGA 60.163 44.000 0.00 0.00 44.12 2.92
243 316 2.121644 ACCCGAAAACCCCTCCCT 60.122 61.111 0.00 0.00 0.00 4.20
245 318 1.298993 GAGACCCGAAAACCCCTCC 59.701 63.158 0.00 0.00 0.00 4.30
256 329 2.271800 CTTTTTCATCTCCGAGACCCG 58.728 52.381 0.00 0.00 38.18 5.28
563 644 5.659463 GAGATCCCATTCCAAGATAGATCG 58.341 45.833 0.00 0.00 35.07 3.69
564 645 5.420421 TCGAGATCCCATTCCAAGATAGATC 59.580 44.000 0.00 0.00 0.00 2.75
565 646 5.336945 TCGAGATCCCATTCCAAGATAGAT 58.663 41.667 0.00 0.00 0.00 1.98
567 648 5.417811 CATCGAGATCCCATTCCAAGATAG 58.582 45.833 0.00 0.00 0.00 2.08
568 649 4.223700 CCATCGAGATCCCATTCCAAGATA 59.776 45.833 0.00 0.00 0.00 1.98
569 650 3.008813 CCATCGAGATCCCATTCCAAGAT 59.991 47.826 0.00 0.00 0.00 2.40
570 651 2.369860 CCATCGAGATCCCATTCCAAGA 59.630 50.000 0.00 0.00 0.00 3.02
571 652 2.105477 ACCATCGAGATCCCATTCCAAG 59.895 50.000 0.00 0.00 0.00 3.61
573 654 1.806496 ACCATCGAGATCCCATTCCA 58.194 50.000 0.00 0.00 0.00 3.53
574 655 4.130286 GATACCATCGAGATCCCATTCC 57.870 50.000 0.00 0.00 0.00 3.01
587 668 5.852229 GTCGTTGAGATAGTTCGATACCATC 59.148 44.000 0.00 0.00 33.35 3.51
588 669 5.278364 GGTCGTTGAGATAGTTCGATACCAT 60.278 44.000 0.00 0.00 33.35 3.55
589 670 4.036027 GGTCGTTGAGATAGTTCGATACCA 59.964 45.833 0.00 0.00 33.35 3.25
590 671 4.535116 GGTCGTTGAGATAGTTCGATACC 58.465 47.826 0.00 0.00 33.35 2.73
591 672 4.209870 CGGTCGTTGAGATAGTTCGATAC 58.790 47.826 0.00 0.00 33.35 2.24
592 673 3.873361 ACGGTCGTTGAGATAGTTCGATA 59.127 43.478 0.00 0.00 33.35 2.92
593 674 2.681848 ACGGTCGTTGAGATAGTTCGAT 59.318 45.455 0.00 0.00 33.35 3.59
594 675 2.079158 ACGGTCGTTGAGATAGTTCGA 58.921 47.619 0.00 0.00 0.00 3.71
595 676 2.159612 TCACGGTCGTTGAGATAGTTCG 60.160 50.000 0.00 0.00 0.00 3.95
596 677 3.169733 GTCACGGTCGTTGAGATAGTTC 58.830 50.000 0.00 0.00 0.00 3.01
597 678 2.413765 CGTCACGGTCGTTGAGATAGTT 60.414 50.000 0.00 0.00 0.00 2.24
598 679 1.129998 CGTCACGGTCGTTGAGATAGT 59.870 52.381 0.00 0.00 0.00 2.12
599 680 1.531264 CCGTCACGGTCGTTGAGATAG 60.531 57.143 8.54 0.00 42.73 2.08
600 681 0.448990 CCGTCACGGTCGTTGAGATA 59.551 55.000 8.54 0.00 42.73 1.98
601 682 1.211969 CCGTCACGGTCGTTGAGAT 59.788 57.895 8.54 0.00 42.73 2.75
602 683 2.640989 CCGTCACGGTCGTTGAGA 59.359 61.111 8.54 0.00 42.73 3.27
609 690 7.892196 TAGATACTTCTCAATCCGTCACGGTC 61.892 46.154 17.80 1.11 39.61 4.79
610 691 6.149070 TAGATACTTCTCAATCCGTCACGGT 61.149 44.000 17.80 0.00 39.61 4.83
611 692 4.275196 TAGATACTTCTCAATCCGTCACGG 59.725 45.833 11.06 11.06 39.82 4.94
612 693 4.294416 AGATACTTCTCAATCCGTCACG 57.706 45.455 0.00 0.00 0.00 4.35
613 694 7.921214 TGATTTAGATACTTCTCAATCCGTCAC 59.079 37.037 7.20 0.00 39.96 3.67
614 695 8.007405 TGATTTAGATACTTCTCAATCCGTCA 57.993 34.615 7.20 0.00 39.96 4.35
615 696 8.353684 TCTGATTTAGATACTTCTCAATCCGTC 58.646 37.037 7.20 0.00 39.96 4.79
616 697 8.239038 TCTGATTTAGATACTTCTCAATCCGT 57.761 34.615 7.20 0.00 39.96 4.69
617 698 9.352784 GATCTGATTTAGATACTTCTCAATCCG 57.647 37.037 7.20 2.81 46.12 4.18
635 716 8.954350 GCTGCTATTGGTATTATTGATCTGATT 58.046 33.333 0.00 0.00 0.00 2.57
636 717 8.327271 AGCTGCTATTGGTATTATTGATCTGAT 58.673 33.333 0.00 0.00 0.00 2.90
637 718 7.683578 AGCTGCTATTGGTATTATTGATCTGA 58.316 34.615 0.00 0.00 0.00 3.27
638 719 7.918536 AGCTGCTATTGGTATTATTGATCTG 57.081 36.000 0.00 0.00 0.00 2.90
639 720 8.381636 AGAAGCTGCTATTGGTATTATTGATCT 58.618 33.333 0.90 0.00 0.00 2.75
640 721 8.449397 CAGAAGCTGCTATTGGTATTATTGATC 58.551 37.037 0.90 0.00 0.00 2.92
641 722 7.392673 CCAGAAGCTGCTATTGGTATTATTGAT 59.607 37.037 18.95 0.00 0.00 2.57
642 723 6.712095 CCAGAAGCTGCTATTGGTATTATTGA 59.288 38.462 18.95 0.00 0.00 2.57
643 724 6.569226 GCCAGAAGCTGCTATTGGTATTATTG 60.569 42.308 24.50 6.12 38.99 1.90
644 725 5.474876 GCCAGAAGCTGCTATTGGTATTATT 59.525 40.000 24.50 0.00 38.99 1.40
645 726 5.006386 GCCAGAAGCTGCTATTGGTATTAT 58.994 41.667 24.50 0.00 38.99 1.28
646 727 4.389374 GCCAGAAGCTGCTATTGGTATTA 58.611 43.478 24.50 0.00 38.99 0.98
647 728 3.217626 GCCAGAAGCTGCTATTGGTATT 58.782 45.455 24.50 0.67 38.99 1.89
648 729 2.856222 GCCAGAAGCTGCTATTGGTAT 58.144 47.619 24.50 1.36 38.99 2.73
649 730 2.332063 GCCAGAAGCTGCTATTGGTA 57.668 50.000 24.50 0.00 38.99 3.25
650 731 3.181526 GCCAGAAGCTGCTATTGGT 57.818 52.632 24.50 2.72 38.99 3.67
660 741 2.233922 TCAACTACCAGTAGCCAGAAGC 59.766 50.000 4.72 0.00 44.25 3.86
661 742 4.160439 TGATCAACTACCAGTAGCCAGAAG 59.840 45.833 4.72 0.00 36.66 2.85
662 743 4.093743 TGATCAACTACCAGTAGCCAGAA 58.906 43.478 4.72 0.00 36.66 3.02
663 744 3.708451 TGATCAACTACCAGTAGCCAGA 58.292 45.455 4.72 1.60 36.66 3.86
664 745 4.184629 GTTGATCAACTACCAGTAGCCAG 58.815 47.826 27.66 0.00 38.25 4.85
665 746 4.202245 GTTGATCAACTACCAGTAGCCA 57.798 45.455 27.66 0.00 38.25 4.75
677 758 6.700081 GGGAAAAGTTTGGTTAGTTGATCAAC 59.300 38.462 27.69 27.69 41.45 3.18
678 759 6.381420 TGGGAAAAGTTTGGTTAGTTGATCAA 59.619 34.615 3.38 3.38 0.00 2.57
679 760 5.894393 TGGGAAAAGTTTGGTTAGTTGATCA 59.106 36.000 0.00 0.00 0.00 2.92
680 761 6.399639 TGGGAAAAGTTTGGTTAGTTGATC 57.600 37.500 0.00 0.00 0.00 2.92
681 762 6.994421 ATGGGAAAAGTTTGGTTAGTTGAT 57.006 33.333 0.00 0.00 0.00 2.57
682 763 7.899648 TTATGGGAAAAGTTTGGTTAGTTGA 57.100 32.000 0.00 0.00 0.00 3.18
683 764 9.203421 GATTTATGGGAAAAGTTTGGTTAGTTG 57.797 33.333 0.00 0.00 0.00 3.16
684 765 9.154632 AGATTTATGGGAAAAGTTTGGTTAGTT 57.845 29.630 0.00 0.00 0.00 2.24
685 766 8.721133 AGATTTATGGGAAAAGTTTGGTTAGT 57.279 30.769 0.00 0.00 0.00 2.24
686 767 9.639601 GAAGATTTATGGGAAAAGTTTGGTTAG 57.360 33.333 0.00 0.00 0.00 2.34
687 768 8.590204 GGAAGATTTATGGGAAAAGTTTGGTTA 58.410 33.333 0.00 0.00 0.00 2.85
688 769 7.292356 AGGAAGATTTATGGGAAAAGTTTGGTT 59.708 33.333 0.00 0.00 0.00 3.67
689 770 6.787458 AGGAAGATTTATGGGAAAAGTTTGGT 59.213 34.615 0.00 0.00 0.00 3.67
690 771 7.039082 TGAGGAAGATTTATGGGAAAAGTTTGG 60.039 37.037 0.00 0.00 0.00 3.28
691 772 7.895759 TGAGGAAGATTTATGGGAAAAGTTTG 58.104 34.615 0.00 0.00 0.00 2.93
692 773 8.491045 TTGAGGAAGATTTATGGGAAAAGTTT 57.509 30.769 0.00 0.00 0.00 2.66
693 774 8.670521 ATTGAGGAAGATTTATGGGAAAAGTT 57.329 30.769 0.00 0.00 0.00 2.66
694 775 9.942526 ATATTGAGGAAGATTTATGGGAAAAGT 57.057 29.630 0.00 0.00 0.00 2.66
696 777 9.934784 TCATATTGAGGAAGATTTATGGGAAAA 57.065 29.630 0.00 0.00 0.00 2.29
697 778 9.934784 TTCATATTGAGGAAGATTTATGGGAAA 57.065 29.630 0.00 0.00 0.00 3.13
698 779 9.934784 TTTCATATTGAGGAAGATTTATGGGAA 57.065 29.630 0.00 0.00 0.00 3.97
699 780 9.934784 TTTTCATATTGAGGAAGATTTATGGGA 57.065 29.630 0.00 0.00 0.00 4.37
732 813 9.677567 GAGCACTTGTTTAATTAAATTCTCACA 57.322 29.630 13.54 4.24 0.00 3.58
733 814 9.129209 GGAGCACTTGTTTAATTAAATTCTCAC 57.871 33.333 13.54 1.69 0.00 3.51
734 815 8.855110 TGGAGCACTTGTTTAATTAAATTCTCA 58.145 29.630 13.54 4.65 0.00 3.27
735 816 9.860898 ATGGAGCACTTGTTTAATTAAATTCTC 57.139 29.630 13.54 12.16 0.00 2.87
736 817 9.643693 CATGGAGCACTTGTTTAATTAAATTCT 57.356 29.630 13.54 5.44 0.00 2.40
737 818 9.423061 ACATGGAGCACTTGTTTAATTAAATTC 57.577 29.630 13.54 3.16 34.10 2.17
738 819 9.777297 AACATGGAGCACTTGTTTAATTAAATT 57.223 25.926 13.54 0.00 42.74 1.82
740 821 9.685828 GTAACATGGAGCACTTGTTTAATTAAA 57.314 29.630 6.54 6.54 42.74 1.52
741 822 8.301002 GGTAACATGGAGCACTTGTTTAATTAA 58.699 33.333 14.67 0.00 42.74 1.40
742 823 7.668052 AGGTAACATGGAGCACTTGTTTAATTA 59.332 33.333 14.67 0.00 42.74 1.40
743 824 6.493458 AGGTAACATGGAGCACTTGTTTAATT 59.507 34.615 14.67 0.00 42.74 1.40
744 825 6.010219 AGGTAACATGGAGCACTTGTTTAAT 58.990 36.000 14.67 3.16 42.74 1.40
833 914 0.679505 TCCACAGAGCTGTTTACGCT 59.320 50.000 0.00 0.00 42.83 5.07
1259 2344 6.309494 CGACAGTGAAATACGGAATCAGTAAA 59.691 38.462 0.00 0.00 0.00 2.01
1338 2423 4.394920 TGGCTCGAACAGATATTCAAAACC 59.605 41.667 0.00 0.00 0.00 3.27
1404 2506 7.822822 CCTGCAGATTGATGTCAGATAATCATA 59.177 37.037 17.39 0.00 33.01 2.15
1476 2578 3.056107 CCCTGTGATTAAACCTCAGACGA 60.056 47.826 10.16 0.00 0.00 4.20
1877 2982 4.315803 AGCAGAAACACGCATAACTAAGT 58.684 39.130 0.00 0.00 0.00 2.24
1888 2993 6.812160 AGAGTACCTATAAAAGCAGAAACACG 59.188 38.462 0.00 0.00 0.00 4.49
2061 3166 5.010012 GGACAGTCAAATGAAATCCAACACT 59.990 40.000 2.17 0.00 0.00 3.55
2129 3234 4.202212 GCCTCATTCTCCTCTTCTTCTACC 60.202 50.000 0.00 0.00 0.00 3.18
2198 3303 3.791953 TTAAGAAAACGGGGGTCATCA 57.208 42.857 0.00 0.00 0.00 3.07
2274 3379 5.753921 GGTTAACATCCTACAGATTTCCTCG 59.246 44.000 8.10 0.00 30.59 4.63
2328 3433 5.358725 TGGACAAGGTGTCTTTAGGTTTTTC 59.641 40.000 8.21 0.00 46.19 2.29
2342 3447 2.260869 CCGCCAGTTGGACAAGGTG 61.261 63.158 1.45 0.00 37.39 4.00
2421 3526 4.889832 AGCTAGCAATACACATTTCTGC 57.110 40.909 18.83 0.00 0.00 4.26
2478 3583 4.937620 GTGAGGAAGCATGATCTACACAAA 59.062 41.667 0.00 0.00 0.00 2.83
2508 3613 9.023962 TGACTGGCTTCTAAAAATGTTGATTAT 57.976 29.630 0.00 0.00 0.00 1.28
2509 3614 8.296713 GTGACTGGCTTCTAAAAATGTTGATTA 58.703 33.333 0.00 0.00 0.00 1.75
2610 3717 2.699954 AGTCCAATAAAGCACTCGGTG 58.300 47.619 0.25 0.25 36.51 4.94
2623 3730 7.725844 AGACAAAAGACAGGAAATTAGTCCAAT 59.274 33.333 0.00 0.00 40.48 3.16
2735 3842 2.578021 AGCCCAGGATACAACTCATGTT 59.422 45.455 0.00 0.00 43.63 2.71
3051 4238 4.630644 TTCTTGGAAGATTGACTCTGCT 57.369 40.909 0.00 0.00 34.49 4.24
3184 4378 5.119588 GCAATCATGTGACATCAACCAAAAG 59.880 40.000 0.00 0.00 0.00 2.27
3191 4385 2.820787 TGCAGCAATCATGTGACATCAA 59.179 40.909 0.00 0.00 0.00 2.57
3231 4425 2.629617 CAAAGAGGGGCAAACAGATTGT 59.370 45.455 0.00 0.00 41.32 2.71
3242 4436 6.538263 AGATTTATCTGTATCAAAGAGGGGC 58.462 40.000 0.00 0.00 35.42 5.80
3330 4524 9.052365 GGGAAGAAGGATAAGGAACATATAGAT 57.948 37.037 0.00 0.00 0.00 1.98
3331 4525 8.242325 AGGGAAGAAGGATAAGGAACATATAGA 58.758 37.037 0.00 0.00 0.00 1.98
3351 4545 4.946157 AGAAAATCACAGTGCATAGGGAAG 59.054 41.667 0.00 0.00 0.00 3.46
3356 4550 5.106436 TGCAGAAGAAAATCACAGTGCATAG 60.106 40.000 0.00 0.00 34.87 2.23
3391 4585 7.069877 ACCTACCACATTGAACTAAACTACA 57.930 36.000 0.00 0.00 0.00 2.74
3467 4661 2.437281 AGATCAGAACAGGCCCTACATG 59.563 50.000 0.00 0.00 0.00 3.21
3468 4662 2.703007 GAGATCAGAACAGGCCCTACAT 59.297 50.000 0.00 0.00 0.00 2.29
3469 4663 2.111384 GAGATCAGAACAGGCCCTACA 58.889 52.381 0.00 0.00 0.00 2.74
3470 4664 1.414550 GGAGATCAGAACAGGCCCTAC 59.585 57.143 0.00 0.00 0.00 3.18
3471 4665 1.292242 AGGAGATCAGAACAGGCCCTA 59.708 52.381 0.00 0.00 0.00 3.53
3494 4688 0.105964 TCGTGGAGTTGGTGGAGTTG 59.894 55.000 0.00 0.00 0.00 3.16
3506 4700 0.462759 GGGAAGCTGGAATCGTGGAG 60.463 60.000 0.00 0.00 0.00 3.86
3528 4722 1.079543 CGTGGAGTGAGAAGCTGGG 60.080 63.158 0.00 0.00 0.00 4.45
3571 4765 4.821589 GGGAGAAGCCAGCGGTCG 62.822 72.222 0.00 0.00 38.95 4.79
3572 4766 2.932130 GATGGGAGAAGCCAGCGGTC 62.932 65.000 0.00 0.00 38.95 4.79
3573 4767 3.011517 ATGGGAGAAGCCAGCGGT 61.012 61.111 0.00 0.00 38.95 5.68
3574 4768 2.203126 GATGGGAGAAGCCAGCGG 60.203 66.667 0.00 0.00 38.95 5.52
3575 4769 2.587194 CGATGGGAGAAGCCAGCG 60.587 66.667 0.00 0.00 39.31 5.18
3576 4770 2.899339 GCGATGGGAGAAGCCAGC 60.899 66.667 0.00 0.00 38.95 4.85
3580 4774 0.394565 ATACTGGCGATGGGAGAAGC 59.605 55.000 0.00 0.00 0.00 3.86
3581 4775 1.270518 CCATACTGGCGATGGGAGAAG 60.271 57.143 5.26 0.00 40.29 2.85
3582 4776 0.758734 CCATACTGGCGATGGGAGAA 59.241 55.000 5.26 0.00 40.29 2.87
3583 4777 2.440946 CCATACTGGCGATGGGAGA 58.559 57.895 5.26 0.00 40.29 3.71
3593 4787 1.152819 ATGCTGCAGCCCATACTGG 60.153 57.895 34.64 0.00 41.18 4.00
3594 4788 1.452953 CCATGCTGCAGCCCATACTG 61.453 60.000 34.64 20.24 41.18 2.74
3595 4789 1.152819 CCATGCTGCAGCCCATACT 60.153 57.895 34.64 10.38 41.18 2.12
3596 4790 2.198287 CCCATGCTGCAGCCCATAC 61.198 63.158 34.64 8.07 41.18 2.39
3634 4828 0.394899 GCTAGTTCTGCTGGCCCATT 60.395 55.000 0.00 0.00 44.70 3.16
3644 4838 1.517832 CCGACCTGGGCTAGTTCTG 59.482 63.158 0.00 0.00 0.00 3.02
3703 4897 2.517450 CGATTCGCTCGTTCCCAGC 61.517 63.158 0.00 0.00 42.56 4.85
3733 4927 1.066430 TGTAACGATTCACTCCTGGCC 60.066 52.381 0.00 0.00 0.00 5.36
3741 4935 1.127951 CCGCCAAGTGTAACGATTCAC 59.872 52.381 0.00 0.00 45.86 3.18
3742 4936 1.270412 ACCGCCAAGTGTAACGATTCA 60.270 47.619 0.00 0.00 45.86 2.57
3748 4942 1.241315 ATGCCACCGCCAAGTGTAAC 61.241 55.000 0.00 0.00 35.93 2.50
3752 4946 1.080569 GAAATGCCACCGCCAAGTG 60.081 57.895 0.00 0.00 37.51 3.16
3765 4959 5.295431 TCGCTCAAATTACACCTGAAATG 57.705 39.130 0.00 0.00 0.00 2.32
3791 7398 2.484264 CTCCACCGAAACTAAAAGCTGG 59.516 50.000 0.00 0.00 0.00 4.85
3792 7399 2.095718 GCTCCACCGAAACTAAAAGCTG 60.096 50.000 0.00 0.00 0.00 4.24
3800 7407 2.113243 GACCCAGCTCCACCGAAACT 62.113 60.000 0.00 0.00 0.00 2.66
3846 7453 0.682532 TCTCGGAGCTGAGCACTCAT 60.683 55.000 7.39 0.00 39.13 2.90
3879 7486 4.821589 CCCCGAACGCCTGAGCTC 62.822 72.222 6.82 6.82 36.60 4.09
3893 7500 3.041940 CACACGTGAAGTCGCCCC 61.042 66.667 25.01 0.00 0.00 5.80
3931 7538 1.556911 GGCCTGTTCTGATTCTCTCCA 59.443 52.381 0.00 0.00 0.00 3.86
3954 7561 8.921205 GGACTAAAAGGACATGTAGGAATACTA 58.079 37.037 0.00 0.00 0.00 1.82
3955 7562 7.624077 AGGACTAAAAGGACATGTAGGAATACT 59.376 37.037 0.00 0.00 0.00 2.12
3956 7563 7.711339 CAGGACTAAAAGGACATGTAGGAATAC 59.289 40.741 0.00 0.00 0.00 1.89
4045 7652 6.073003 GCCTGTTACCAGATATGAATACTTGC 60.073 42.308 0.00 0.00 41.50 4.01
4170 8065 6.500684 ACTATTTATCATAATGGCAAGCCG 57.499 37.500 6.60 0.00 39.42 5.52
4232 8127 0.036388 CGACACATGGTAACCCTGCT 60.036 55.000 0.00 0.00 0.00 4.24
4233 8128 0.036765 TCGACACATGGTAACCCTGC 60.037 55.000 0.00 0.00 0.00 4.85
4234 8129 2.465860 TTCGACACATGGTAACCCTG 57.534 50.000 0.00 0.00 0.00 4.45
4287 8182 3.443099 TCTTCCAGTATCTGCATGACG 57.557 47.619 0.00 0.00 0.00 4.35
4302 8197 3.214328 ACACACACAAGACCATTCTTCC 58.786 45.455 0.00 0.00 40.34 3.46
4324 8219 4.172505 GTTGTTGTTGTTCAGACATGCAA 58.827 39.130 0.00 0.00 35.29 4.08
4354 8250 4.629634 ACTAAAAGGCTTTGTTGTTGTTGC 59.370 37.500 14.19 0.00 0.00 4.17
4442 8338 3.070476 TGAAGTTAGCCATCACATGCA 57.930 42.857 0.00 0.00 0.00 3.96
4481 8378 7.037586 AGGACTGGAATATCACCAAAGAACTAA 60.038 37.037 3.72 0.00 36.95 2.24
4524 8421 4.164988 CCAAACTTGATATGGGAGGAGTCT 59.835 45.833 0.00 0.00 0.00 3.24
4760 8678 3.099905 AGTTAGGTGTAGCAGAGATGCA 58.900 45.455 2.73 0.00 37.25 3.96
4807 8728 3.000041 GTTGTATGGCGATGACTGTTCA 59.000 45.455 0.00 0.00 35.73 3.18
4813 8734 2.097304 TGCAATGTTGTATGGCGATGAC 59.903 45.455 0.00 0.00 0.00 3.06
4860 8781 4.525912 ATGCCACAAAAGCTAAAAGGAG 57.474 40.909 0.00 0.00 0.00 3.69
4861 8782 4.588528 AGAATGCCACAAAAGCTAAAAGGA 59.411 37.500 0.00 0.00 0.00 3.36
4913 8834 0.104777 AGCTGGATAGATGAGGGGCA 60.105 55.000 0.00 0.00 0.00 5.36
4924 8846 2.369860 AGCCATCGAATCAAGCTGGATA 59.630 45.455 3.37 0.00 31.23 2.59
5099 10676 5.765176 TGTAGAGACAGACGAAATCGAAAA 58.235 37.500 10.16 0.00 43.02 2.29
5150 10730 0.101759 GGTGCTAGTCGACGGCAATA 59.898 55.000 29.97 13.43 37.73 1.90
5155 10735 0.525668 GATGTGGTGCTAGTCGACGG 60.526 60.000 10.46 8.51 0.00 4.79
5267 10848 1.150536 GGACTGCACCAAGGGTCAA 59.849 57.895 4.20 0.00 31.02 3.18
5293 10876 1.079503 GCGACACTGATGACTTTCCC 58.920 55.000 0.00 0.00 0.00 3.97
5358 10942 5.261216 CAACAAAGTACATTACCCCCATCT 58.739 41.667 0.00 0.00 0.00 2.90
5387 10971 2.222027 GTGGTCCTTGGAGAAACACAG 58.778 52.381 0.00 0.00 0.00 3.66
5433 11017 0.970937 CGACTTGGAGAGGGCCTACA 60.971 60.000 5.73 2.99 32.74 2.74
5452 11036 8.871686 AAAACAACTTAAGAATGGTGTTCATC 57.128 30.769 10.09 0.00 34.44 2.92
5464 11048 7.558444 ACTTCATGTGGGTAAAACAACTTAAGA 59.442 33.333 10.09 0.00 0.00 2.10
5465 11049 7.712797 ACTTCATGTGGGTAAAACAACTTAAG 58.287 34.615 0.00 0.00 0.00 1.85
5466 11050 7.648039 ACTTCATGTGGGTAAAACAACTTAA 57.352 32.000 0.00 0.00 0.00 1.85
5475 11067 4.506625 CCTCTCCAACTTCATGTGGGTAAA 60.507 45.833 0.59 0.00 40.71 2.01
5481 11073 1.457346 GCCCTCTCCAACTTCATGTG 58.543 55.000 0.00 0.00 0.00 3.21
5483 11075 0.622665 AGGCCCTCTCCAACTTCATG 59.377 55.000 0.00 0.00 0.00 3.07
5485 11077 1.276622 GTAGGCCCTCTCCAACTTCA 58.723 55.000 0.00 0.00 0.00 3.02
5486 11078 1.208293 CTGTAGGCCCTCTCCAACTTC 59.792 57.143 0.00 0.00 0.00 3.01
5488 11080 0.117340 ACTGTAGGCCCTCTCCAACT 59.883 55.000 0.00 0.00 0.00 3.16
5490 11082 2.634639 TTACTGTAGGCCCTCTCCAA 57.365 50.000 0.00 0.00 0.00 3.53
5491 11083 2.634639 TTTACTGTAGGCCCTCTCCA 57.365 50.000 0.00 0.00 0.00 3.86
5492 11084 3.008704 TGTTTTTACTGTAGGCCCTCTCC 59.991 47.826 0.00 0.00 0.00 3.71
5493 11085 4.001652 GTGTTTTTACTGTAGGCCCTCTC 58.998 47.826 0.00 0.00 0.00 3.20
5494 11086 3.651423 AGTGTTTTTACTGTAGGCCCTCT 59.349 43.478 0.00 0.00 0.00 3.69
5495 11087 4.017177 AGTGTTTTTACTGTAGGCCCTC 57.983 45.455 0.00 0.00 0.00 4.30
5497 11089 3.187842 CGAAGTGTTTTTACTGTAGGCCC 59.812 47.826 0.00 0.00 0.00 5.80
5500 11092 6.839820 AGTTCGAAGTGTTTTTACTGTAGG 57.160 37.500 4.28 0.00 0.00 3.18
5505 11097 7.754625 TGCTTAAAGTTCGAAGTGTTTTTACT 58.245 30.769 6.19 0.00 0.00 2.24
5506 11098 7.305247 GCTGCTTAAAGTTCGAAGTGTTTTTAC 60.305 37.037 6.19 0.00 0.00 2.01
5507 11099 6.689669 GCTGCTTAAAGTTCGAAGTGTTTTTA 59.310 34.615 6.19 0.00 0.00 1.52
5508 11100 5.515270 GCTGCTTAAAGTTCGAAGTGTTTTT 59.485 36.000 6.19 0.00 0.00 1.94
5509 11101 5.034797 GCTGCTTAAAGTTCGAAGTGTTTT 58.965 37.500 6.19 0.00 0.00 2.43
5532 13461 6.695429 TGCAGGAGTAGATTATAGCAGAATG 58.305 40.000 0.00 0.00 40.87 2.67
5619 13552 8.357402 ACTCCTGTGGACATTTAAATTGTTAAC 58.643 33.333 0.00 0.00 0.00 2.01
5652 13585 4.742167 GTCTTCGTCATCATCATCATCGTT 59.258 41.667 0.00 0.00 0.00 3.85
5672 13605 6.681777 TGATAATTGATGATCATCGTCGTCT 58.318 36.000 26.52 12.28 40.63 4.18
5673 13606 6.934561 TGATAATTGATGATCATCGTCGTC 57.065 37.500 26.52 20.14 40.63 4.20
5674 13607 7.713764 TTTGATAATTGATGATCATCGTCGT 57.286 32.000 26.52 15.82 40.63 4.34
5875 13808 2.938956 AAGGAAGGTGGACACAAGAG 57.061 50.000 4.69 0.00 0.00 2.85
5922 13855 3.008157 AGAGATGCCAGCTGGAATATGAG 59.992 47.826 37.21 7.51 32.14 2.90
5937 13870 2.159310 AGCTGACACGTAGAAGAGATGC 60.159 50.000 0.00 0.00 0.00 3.91
5963 13896 4.816385 CAGTTAGGCACTCAACTTCAAGAA 59.184 41.667 0.00 0.00 41.75 2.52
6079 14012 1.959282 CCTCACTGCTTTCTGCCTTTT 59.041 47.619 0.00 0.00 42.00 2.27
6090 14023 3.006323 CACTCTTTGTAGTCCTCACTGCT 59.994 47.826 0.00 0.00 36.27 4.24
6091 14024 3.321497 CACTCTTTGTAGTCCTCACTGC 58.679 50.000 0.00 0.00 35.86 4.40
6404 14337 8.055279 ACTACCATCCAATTTATTTGTCACTG 57.945 34.615 0.00 0.00 33.15 3.66
6461 14394 7.698506 ATGTGGTACGATAATAAGCTAGCTA 57.301 36.000 19.70 1.74 0.00 3.32
6462 14395 6.591750 ATGTGGTACGATAATAAGCTAGCT 57.408 37.500 12.68 12.68 0.00 3.32
6463 14396 6.645415 ACAATGTGGTACGATAATAAGCTAGC 59.355 38.462 6.62 6.62 0.00 3.42
6464 14397 9.343103 CTACAATGTGGTACGATAATAAGCTAG 57.657 37.037 0.00 0.00 0.00 3.42
6477 14410 1.801771 TGCAACGCTACAATGTGGTAC 59.198 47.619 0.00 0.00 0.00 3.34
6616 14557 3.054166 GGACGGTTTACATTTTTGCACC 58.946 45.455 0.00 0.00 0.00 5.01
6847 14788 1.899617 TGCGACAGGATGCATCTGA 59.100 52.632 25.28 4.35 42.53 3.27
6848 14789 4.526770 TGCGACAGGATGCATCTG 57.473 55.556 25.28 21.45 42.53 2.90
6899 14842 3.005155 GCCTAGCATTGGCCATTTTAGAG 59.995 47.826 6.09 0.00 44.32 2.43
6936 15089 1.267574 GGTGACCCATCTGAGCTCCA 61.268 60.000 12.15 0.00 0.00 3.86
7002 15178 4.439305 TTTTTGCCGATCAAATCTGAGG 57.561 40.909 0.00 0.00 43.53 3.86
7025 15201 4.394920 TGTGGGATTATTTCTCGTTTGCTC 59.605 41.667 0.00 0.00 0.00 4.26
7119 15318 1.079543 GAGTGCGCTGATGAGTGGT 60.080 57.895 3.44 0.00 0.00 4.16
7132 15331 3.941657 GACCAGGGACAGCGAGTGC 62.942 68.421 0.00 0.00 43.24 4.40
7133 15332 2.219325 GAGACCAGGGACAGCGAGTG 62.219 65.000 0.00 0.00 0.00 3.51
7134 15333 1.979693 GAGACCAGGGACAGCGAGT 60.980 63.158 0.00 0.00 0.00 4.18
7135 15334 2.888863 GAGACCAGGGACAGCGAG 59.111 66.667 0.00 0.00 0.00 5.03
7136 15335 3.062466 CGAGACCAGGGACAGCGA 61.062 66.667 0.00 0.00 0.00 4.93
7137 15336 2.932234 AACGAGACCAGGGACAGCG 61.932 63.158 0.00 0.00 0.00 5.18
7138 15337 1.374758 CAACGAGACCAGGGACAGC 60.375 63.158 0.00 0.00 0.00 4.40
7139 15338 1.374758 GCAACGAGACCAGGGACAG 60.375 63.158 0.00 0.00 0.00 3.51
7140 15339 1.837051 AGCAACGAGACCAGGGACA 60.837 57.895 0.00 0.00 0.00 4.02
7141 15340 1.374758 CAGCAACGAGACCAGGGAC 60.375 63.158 0.00 0.00 0.00 4.46
7142 15341 3.059982 CAGCAACGAGACCAGGGA 58.940 61.111 0.00 0.00 0.00 4.20
7143 15342 2.743928 GCAGCAACGAGACCAGGG 60.744 66.667 0.00 0.00 0.00 4.45
7144 15343 2.031012 TGCAGCAACGAGACCAGG 59.969 61.111 0.00 0.00 0.00 4.45
7312 15533 0.324368 ACCGATGGACAGAGGTGCTA 60.324 55.000 1.46 0.00 36.16 3.49
7320 15541 2.184020 TTGCTGGGACCGATGGACAG 62.184 60.000 0.00 0.00 0.00 3.51
7344 15565 4.332637 GCAACCACAGGTGCTGCG 62.333 66.667 8.37 0.00 35.34 5.18
7346 15567 3.036577 CTGCAACCACAGGTGCTG 58.963 61.111 4.54 0.00 35.34 4.41
7351 15572 3.357079 GGACGCTGCAACCACAGG 61.357 66.667 0.00 0.00 38.16 4.00
7355 15576 2.904866 GTTGGGACGCTGCAACCA 60.905 61.111 12.73 8.31 0.00 3.67
7356 15577 3.670377 GGTTGGGACGCTGCAACC 61.670 66.667 0.00 0.00 39.99 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.