Multiple sequence alignment - TraesCS3B01G239100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G239100 chr3B 100.000 5773 0 0 1 5773 377417979 377423751 0.000000e+00 10661.0
1 TraesCS3B01G239100 chr3B 95.987 299 11 1 1 298 769151799 769152097 8.700000e-133 484.0
2 TraesCS3B01G239100 chr3B 95.593 295 13 0 1 295 769216367 769216073 1.880000e-129 473.0
3 TraesCS3B01G239100 chr3D 96.447 4053 82 27 1692 5729 283311222 283315227 0.000000e+00 6630.0
4 TraesCS3B01G239100 chr3D 96.356 1372 29 4 295 1664 283309874 283311226 0.000000e+00 2237.0
5 TraesCS3B01G239100 chr3D 83.971 418 53 11 1698 2108 559188545 559188135 7.010000e-104 388.0
6 TraesCS3B01G239100 chr3D 88.889 162 15 3 2653 2813 54335469 54335628 4.560000e-46 196.0
7 TraesCS3B01G239100 chr3A 95.175 3088 103 19 2442 5506 370235451 370238515 0.000000e+00 4835.0
8 TraesCS3B01G239100 chr3A 90.116 1730 104 26 629 2336 370233431 370235115 0.000000e+00 2185.0
9 TraesCS3B01G239100 chr3A 89.925 268 8 15 5519 5773 370238499 370238760 1.550000e-85 327.0
10 TraesCS3B01G239100 chr3A 93.269 104 6 1 2330 2432 370235207 370235310 1.000000e-32 152.0
11 TraesCS3B01G239100 chr3A 97.222 36 0 1 4511 4545 44444020 44443985 6.250000e-05 60.2
12 TraesCS3B01G239100 chr1B 96.610 295 10 0 1 295 427670964 427670670 1.870000e-134 490.0
13 TraesCS3B01G239100 chr1B 95.593 295 13 0 1 295 613732541 613732247 1.880000e-129 473.0
14 TraesCS3B01G239100 chr1B 88.333 60 6 1 1634 1693 378835725 378835783 2.890000e-08 71.3
15 TraesCS3B01G239100 chr1B 97.222 36 0 1 4511 4545 432109165 432109200 6.250000e-05 60.2
16 TraesCS3B01G239100 chrUn 95.652 299 12 1 1 298 287789544 287789246 4.050000e-131 479.0
17 TraesCS3B01G239100 chrUn 95.652 299 12 1 1 298 287807811 287807513 4.050000e-131 479.0
18 TraesCS3B01G239100 chr7B 95.932 295 12 0 1 295 681781738 681781444 4.050000e-131 479.0
19 TraesCS3B01G239100 chr7B 95.593 295 13 0 1 295 681758583 681758289 1.880000e-129 473.0
20 TraesCS3B01G239100 chr7B 95.890 292 12 0 4 295 681787984 681787693 1.880000e-129 473.0
21 TraesCS3B01G239100 chr7B 92.593 54 3 1 1636 1689 727442723 727442775 6.200000e-10 76.8
22 TraesCS3B01G239100 chr7B 97.222 36 0 1 4511 4545 458563443 458563408 6.250000e-05 60.2
23 TraesCS3B01G239100 chr7B 85.246 61 3 3 1633 1693 450642200 450642146 2.250000e-04 58.4
24 TraesCS3B01G239100 chr2B 87.260 416 44 9 1698 2107 419553597 419554009 3.150000e-127 466.0
25 TraesCS3B01G239100 chr2B 86.331 417 39 9 1698 2108 777651150 777651554 6.870000e-119 438.0
26 TraesCS3B01G239100 chr2A 86.779 416 46 6 1698 2109 165231073 165230663 6.820000e-124 455.0
27 TraesCS3B01G239100 chr2A 84.314 408 49 11 1698 2101 528265826 528266222 9.070000e-103 385.0
28 TraesCS3B01G239100 chr5A 86.914 405 49 4 1699 2101 564772268 564772670 8.820000e-123 451.0
29 TraesCS3B01G239100 chr5A 92.562 121 9 0 324 444 657670256 657670376 2.140000e-39 174.0
30 TraesCS3B01G239100 chr5A 97.222 36 0 1 4511 4545 688610379 688610414 6.250000e-05 60.2
31 TraesCS3B01G239100 chr5D 86.294 394 44 7 1697 2087 555421576 555421962 2.490000e-113 420.0
32 TraesCS3B01G239100 chr2D 78.075 374 44 12 2442 2813 467996847 467997184 9.810000e-48 202.0
33 TraesCS3B01G239100 chr2D 97.222 36 0 1 4511 4545 520639814 520639779 6.250000e-05 60.2
34 TraesCS3B01G239100 chr7A 77.067 375 47 13 2442 2813 367255851 367256189 4.600000e-41 180.0
35 TraesCS3B01G239100 chr7D 89.831 59 5 1 1635 1693 54836545 54836488 2.230000e-09 75.0
36 TraesCS3B01G239100 chr6D 92.308 52 3 1 1637 1688 90111816 90111866 8.020000e-09 73.1
37 TraesCS3B01G239100 chr1D 88.333 60 6 1 1634 1693 279101372 279101430 2.890000e-08 71.3
38 TraesCS3B01G239100 chr1A 93.182 44 2 1 1637 1680 501030193 501030235 4.830000e-06 63.9
39 TraesCS3B01G239100 chr5B 97.222 36 0 1 4511 4545 126610023 126610058 6.250000e-05 60.2
40 TraesCS3B01G239100 chr4D 97.222 36 0 1 4511 4545 27292543 27292508 6.250000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G239100 chr3B 377417979 377423751 5772 False 10661.00 10661 100.00000 1 5773 1 chr3B.!!$F1 5772
1 TraesCS3B01G239100 chr3D 283309874 283315227 5353 False 4433.50 6630 96.40150 295 5729 2 chr3D.!!$F2 5434
2 TraesCS3B01G239100 chr3A 370233431 370238760 5329 False 1874.75 4835 92.12125 629 5773 4 chr3A.!!$F1 5144

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
287 288 0.032017 AGCCCACTCCGATCTAAGGT 60.032 55.000 0.00 0.00 0.00 3.50 F
351 352 0.243907 CGCCGCTATAGCACCAGTAT 59.756 55.000 23.99 0.00 42.21 2.12 F
551 552 0.976641 CTCTGGCTCACTGGTTACCA 59.023 55.000 3.29 3.29 0.00 3.25 F
708 721 1.068083 ACAGTGTGAGGCAGACACG 59.932 57.895 11.86 9.89 46.89 4.49 F
1991 2053 0.029834 TTTACGCGGGAGTAGATCGC 59.970 55.000 12.47 0.00 45.15 4.58 F
1999 2061 0.458669 GGAGTAGATCGCGAACCCAA 59.541 55.000 15.24 0.00 0.00 4.12 F
2425 2587 1.135527 CGCGGATCTTAGTGGGTTACA 59.864 52.381 0.00 0.00 0.00 2.41 F
2785 3078 1.486211 AGGTAGCCATTAGTCGCAGT 58.514 50.000 0.00 0.00 0.00 4.40 F
3237 3541 1.908619 TCTGGAGCAGCATCTGGTAAA 59.091 47.619 0.00 0.00 42.53 2.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1934 1996 1.396996 CCAGGAAAACTATTCGTGGCG 59.603 52.381 14.65 0.00 44.26 5.69 R
1977 2039 1.657794 GTTCGCGATCTACTCCCGC 60.658 63.158 10.88 0.00 44.81 6.13 R
1991 2053 3.616219 TGGGATATCAAACTTGGGTTCG 58.384 45.455 4.83 0.00 34.14 3.95 R
2356 2517 6.046593 TGATATACTTAGTGAAAGGGCGTTG 58.953 40.000 0.00 0.00 39.73 4.10 R
3165 3469 1.544759 CGGCCCCTTCCACAATATACC 60.545 57.143 0.00 0.00 0.00 2.73 R
3403 3709 1.748493 TGAACTGGTGCAGAAACAACC 59.252 47.619 0.00 0.00 35.18 3.77 R
3621 3927 2.036556 GTGTCCATTGCAGAAACACG 57.963 50.000 7.63 0.00 31.90 4.49 R
4599 4906 0.742281 CCTCGCCACATCCTGTTCAG 60.742 60.000 0.00 0.00 0.00 3.02 R
5035 5349 1.476291 CCGTTAAATGACCTAGGGGGC 60.476 57.143 14.81 2.51 42.24 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.361865 GGGCGCCCAACCACAATA 60.362 61.111 40.73 0.00 35.81 1.90
21 22 1.756561 GGGCGCCCAACCACAATAT 60.757 57.895 40.73 0.00 35.81 1.28
22 23 1.437160 GGCGCCCAACCACAATATG 59.563 57.895 18.11 0.00 0.00 1.78
33 34 1.688197 CCACAATATGGTTGATGGGCC 59.312 52.381 0.00 0.00 44.46 5.80
34 35 1.688197 CACAATATGGTTGATGGGCCC 59.312 52.381 17.59 17.59 0.00 5.80
35 36 1.341080 CAATATGGTTGATGGGCCCC 58.659 55.000 22.27 4.91 0.00 5.80
36 37 1.133072 CAATATGGTTGATGGGCCCCT 60.133 52.381 22.27 10.21 0.00 4.79
37 38 0.484212 ATATGGTTGATGGGCCCCTG 59.516 55.000 22.27 0.00 0.00 4.45
38 39 0.923729 TATGGTTGATGGGCCCCTGT 60.924 55.000 22.27 4.95 0.00 4.00
39 40 2.043953 GGTTGATGGGCCCCTGTC 60.044 66.667 22.27 15.55 0.00 3.51
40 41 2.763215 GTTGATGGGCCCCTGTCA 59.237 61.111 22.27 18.16 0.00 3.58
41 42 1.678970 GTTGATGGGCCCCTGTCAC 60.679 63.158 22.27 11.53 0.00 3.67
42 43 3.266686 TTGATGGGCCCCTGTCACG 62.267 63.158 22.27 0.00 0.00 4.35
50 51 4.435436 CCCTGTCACGCAGCGCTA 62.435 66.667 16.61 0.00 43.71 4.26
51 52 3.181967 CCTGTCACGCAGCGCTAC 61.182 66.667 16.61 13.93 43.71 3.58
52 53 2.430751 CTGTCACGCAGCGCTACA 60.431 61.111 16.61 17.90 38.52 2.74
53 54 1.807165 CTGTCACGCAGCGCTACAT 60.807 57.895 16.61 0.00 38.52 2.29
54 55 0.525455 CTGTCACGCAGCGCTACATA 60.525 55.000 16.61 0.00 38.52 2.29
55 56 0.109039 TGTCACGCAGCGCTACATAA 60.109 50.000 16.61 0.00 0.00 1.90
56 57 0.996462 GTCACGCAGCGCTACATAAA 59.004 50.000 16.61 0.00 0.00 1.40
57 58 1.392168 GTCACGCAGCGCTACATAAAA 59.608 47.619 16.61 0.00 0.00 1.52
58 59 2.070028 TCACGCAGCGCTACATAAAAA 58.930 42.857 16.61 0.00 0.00 1.94
59 60 2.093625 TCACGCAGCGCTACATAAAAAG 59.906 45.455 16.61 0.00 0.00 2.27
60 61 1.396996 ACGCAGCGCTACATAAAAAGG 59.603 47.619 16.61 0.00 0.00 3.11
61 62 1.396996 CGCAGCGCTACATAAAAAGGT 59.603 47.619 10.99 0.00 0.00 3.50
62 63 2.785679 GCAGCGCTACATAAAAAGGTG 58.214 47.619 10.99 0.00 0.00 4.00
63 64 2.477863 GCAGCGCTACATAAAAAGGTGG 60.478 50.000 10.99 0.00 0.00 4.61
64 65 2.097466 CAGCGCTACATAAAAAGGTGGG 59.903 50.000 10.99 0.00 0.00 4.61
65 66 1.404035 GCGCTACATAAAAAGGTGGGG 59.596 52.381 0.00 0.00 0.00 4.96
66 67 2.021457 CGCTACATAAAAAGGTGGGGG 58.979 52.381 0.00 0.00 0.00 5.40
67 68 1.754803 GCTACATAAAAAGGTGGGGGC 59.245 52.381 0.00 0.00 0.00 5.80
68 69 2.384828 CTACATAAAAAGGTGGGGGCC 58.615 52.381 0.00 0.00 0.00 5.80
69 70 0.613572 ACATAAAAAGGTGGGGGCCG 60.614 55.000 0.00 0.00 0.00 6.13
70 71 1.001120 ATAAAAAGGTGGGGGCCGG 59.999 57.895 0.00 0.00 0.00 6.13
71 72 3.890250 TAAAAAGGTGGGGGCCGGC 62.890 63.158 21.18 21.18 0.00 6.13
87 88 3.264897 GCGGCATGCACTACGAGG 61.265 66.667 21.36 0.00 45.45 4.63
88 89 2.184322 CGGCATGCACTACGAGGT 59.816 61.111 21.36 0.00 0.00 3.85
89 90 1.447838 CGGCATGCACTACGAGGTT 60.448 57.895 21.36 0.00 0.00 3.50
90 91 1.421410 CGGCATGCACTACGAGGTTC 61.421 60.000 21.36 0.00 0.00 3.62
91 92 0.391130 GGCATGCACTACGAGGTTCA 60.391 55.000 21.36 0.00 0.00 3.18
92 93 0.721718 GCATGCACTACGAGGTTCAC 59.278 55.000 14.21 0.00 0.00 3.18
93 94 1.359848 CATGCACTACGAGGTTCACC 58.640 55.000 0.00 0.00 0.00 4.02
94 95 0.108804 ATGCACTACGAGGTTCACCG 60.109 55.000 0.00 0.00 42.08 4.94
95 96 2.092882 GCACTACGAGGTTCACCGC 61.093 63.158 0.00 0.00 42.08 5.68
101 102 3.723348 GAGGTTCACCGCGTTGCC 61.723 66.667 4.92 0.00 42.08 4.52
102 103 4.555709 AGGTTCACCGCGTTGCCA 62.556 61.111 4.92 0.00 42.08 4.92
103 104 4.025401 GGTTCACCGCGTTGCCAG 62.025 66.667 4.92 0.00 0.00 4.85
104 105 4.025401 GTTCACCGCGTTGCCAGG 62.025 66.667 4.92 0.00 0.00 4.45
117 118 3.646715 CCAGGCTCCCCACCGAAA 61.647 66.667 0.00 0.00 0.00 3.46
118 119 2.434331 CAGGCTCCCCACCGAAAA 59.566 61.111 0.00 0.00 0.00 2.29
119 120 1.971695 CAGGCTCCCCACCGAAAAC 60.972 63.158 0.00 0.00 0.00 2.43
120 121 2.675423 GGCTCCCCACCGAAAACC 60.675 66.667 0.00 0.00 0.00 3.27
121 122 2.675423 GCTCCCCACCGAAAACCC 60.675 66.667 0.00 0.00 0.00 4.11
122 123 2.035155 CTCCCCACCGAAAACCCC 59.965 66.667 0.00 0.00 0.00 4.95
123 124 3.912745 CTCCCCACCGAAAACCCCG 62.913 68.421 0.00 0.00 0.00 5.73
124 125 3.956314 CCCCACCGAAAACCCCGA 61.956 66.667 0.00 0.00 0.00 5.14
125 126 2.670592 CCCACCGAAAACCCCGAC 60.671 66.667 0.00 0.00 0.00 4.79
126 127 2.670592 CCACCGAAAACCCCGACC 60.671 66.667 0.00 0.00 0.00 4.79
127 128 2.670592 CACCGAAAACCCCGACCC 60.671 66.667 0.00 0.00 0.00 4.46
128 129 4.318949 ACCGAAAACCCCGACCCG 62.319 66.667 0.00 0.00 0.00 5.28
129 130 4.006357 CCGAAAACCCCGACCCGA 62.006 66.667 0.00 0.00 0.00 5.14
130 131 2.266689 CGAAAACCCCGACCCGAT 59.733 61.111 0.00 0.00 0.00 4.18
131 132 1.812507 CGAAAACCCCGACCCGATC 60.813 63.158 0.00 0.00 0.00 3.69
132 133 1.600638 GAAAACCCCGACCCGATCT 59.399 57.895 0.00 0.00 0.00 2.75
133 134 0.826062 GAAAACCCCGACCCGATCTA 59.174 55.000 0.00 0.00 0.00 1.98
134 135 0.828677 AAAACCCCGACCCGATCTAG 59.171 55.000 0.00 0.00 0.00 2.43
135 136 1.047034 AAACCCCGACCCGATCTAGG 61.047 60.000 0.00 0.00 0.00 3.02
136 137 2.197875 CCCCGACCCGATCTAGGT 59.802 66.667 4.07 4.07 41.50 3.08
142 143 3.325902 ACCCGATCTAGGTCTAGCG 57.674 57.895 0.62 0.00 28.99 4.26
143 144 0.890090 ACCCGATCTAGGTCTAGCGC 60.890 60.000 0.00 0.00 28.99 5.92
144 145 0.606944 CCCGATCTAGGTCTAGCGCT 60.607 60.000 17.26 17.26 33.32 5.92
145 146 0.519519 CCGATCTAGGTCTAGCGCTG 59.480 60.000 22.90 10.49 33.32 5.18
146 147 1.514003 CGATCTAGGTCTAGCGCTGA 58.486 55.000 22.90 12.92 33.32 4.26
147 148 1.195900 CGATCTAGGTCTAGCGCTGAC 59.804 57.143 22.90 23.21 33.32 3.51
148 149 2.222886 GATCTAGGTCTAGCGCTGACA 58.777 52.381 28.66 16.23 36.26 3.58
149 150 1.669604 TCTAGGTCTAGCGCTGACAG 58.330 55.000 28.66 21.75 36.26 3.51
150 151 1.065345 TCTAGGTCTAGCGCTGACAGT 60.065 52.381 28.66 21.20 36.26 3.55
151 152 1.064803 CTAGGTCTAGCGCTGACAGTG 59.935 57.143 28.66 11.79 36.26 3.66
152 153 0.609406 AGGTCTAGCGCTGACAGTGA 60.609 55.000 28.66 13.65 36.26 3.41
153 154 0.456995 GGTCTAGCGCTGACAGTGAC 60.457 60.000 28.66 21.01 36.26 3.67
154 155 0.794981 GTCTAGCGCTGACAGTGACG 60.795 60.000 22.90 8.32 34.80 4.35
155 156 1.515088 CTAGCGCTGACAGTGACGG 60.515 63.158 22.90 0.00 0.00 4.79
156 157 2.874010 CTAGCGCTGACAGTGACGGG 62.874 65.000 22.90 2.74 0.00 5.28
157 158 4.357947 GCGCTGACAGTGACGGGA 62.358 66.667 20.12 0.00 0.00 5.14
158 159 2.338620 CGCTGACAGTGACGGGAA 59.661 61.111 10.62 0.00 0.00 3.97
159 160 1.300620 CGCTGACAGTGACGGGAAA 60.301 57.895 10.62 0.00 0.00 3.13
160 161 1.557443 CGCTGACAGTGACGGGAAAC 61.557 60.000 10.62 0.00 0.00 2.78
161 162 0.249911 GCTGACAGTGACGGGAAACT 60.250 55.000 3.99 0.00 0.00 2.66
162 163 1.784525 CTGACAGTGACGGGAAACTC 58.215 55.000 0.00 0.00 0.00 3.01
163 164 0.391597 TGACAGTGACGGGAAACTCC 59.608 55.000 0.00 0.00 35.23 3.85
170 171 4.323477 CGGGAAACTCCGCCACCA 62.323 66.667 0.00 0.00 43.71 4.17
171 172 2.671963 GGGAAACTCCGCCACCAC 60.672 66.667 0.00 0.00 37.43 4.16
172 173 2.671963 GGAAACTCCGCCACCACC 60.672 66.667 0.00 0.00 0.00 4.61
173 174 2.112297 GAAACTCCGCCACCACCA 59.888 61.111 0.00 0.00 0.00 4.17
174 175 1.303317 GAAACTCCGCCACCACCAT 60.303 57.895 0.00 0.00 0.00 3.55
175 176 1.303317 AAACTCCGCCACCACCATC 60.303 57.895 0.00 0.00 0.00 3.51
176 177 1.779061 AAACTCCGCCACCACCATCT 61.779 55.000 0.00 0.00 0.00 2.90
177 178 2.185310 AACTCCGCCACCACCATCTC 62.185 60.000 0.00 0.00 0.00 2.75
178 179 2.606213 TCCGCCACCACCATCTCA 60.606 61.111 0.00 0.00 0.00 3.27
179 180 2.184020 CTCCGCCACCACCATCTCAA 62.184 60.000 0.00 0.00 0.00 3.02
180 181 1.077501 CCGCCACCACCATCTCAAT 60.078 57.895 0.00 0.00 0.00 2.57
181 182 1.097547 CCGCCACCACCATCTCAATC 61.098 60.000 0.00 0.00 0.00 2.67
182 183 1.097547 CGCCACCACCATCTCAATCC 61.098 60.000 0.00 0.00 0.00 3.01
183 184 0.034186 GCCACCACCATCTCAATCCA 60.034 55.000 0.00 0.00 0.00 3.41
184 185 1.755179 CCACCACCATCTCAATCCAC 58.245 55.000 0.00 0.00 0.00 4.02
185 186 1.004628 CCACCACCATCTCAATCCACA 59.995 52.381 0.00 0.00 0.00 4.17
186 187 2.357465 CCACCACCATCTCAATCCACAT 60.357 50.000 0.00 0.00 0.00 3.21
187 188 2.947652 CACCACCATCTCAATCCACATC 59.052 50.000 0.00 0.00 0.00 3.06
188 189 2.216046 CCACCATCTCAATCCACATCG 58.784 52.381 0.00 0.00 0.00 3.84
189 190 1.600957 CACCATCTCAATCCACATCGC 59.399 52.381 0.00 0.00 0.00 4.58
190 191 1.233019 CCATCTCAATCCACATCGCC 58.767 55.000 0.00 0.00 0.00 5.54
191 192 0.863799 CATCTCAATCCACATCGCCG 59.136 55.000 0.00 0.00 0.00 6.46
192 193 0.882042 ATCTCAATCCACATCGCCGC 60.882 55.000 0.00 0.00 0.00 6.53
193 194 2.513666 TCAATCCACATCGCCGCC 60.514 61.111 0.00 0.00 0.00 6.13
194 195 3.940640 CAATCCACATCGCCGCCG 61.941 66.667 0.00 0.00 0.00 6.46
195 196 4.467084 AATCCACATCGCCGCCGT 62.467 61.111 0.00 0.00 35.54 5.68
196 197 4.891727 ATCCACATCGCCGCCGTC 62.892 66.667 0.00 0.00 35.54 4.79
206 207 4.082523 CCGCCGTCTCCACACCAT 62.083 66.667 0.00 0.00 0.00 3.55
207 208 2.509336 CGCCGTCTCCACACCATC 60.509 66.667 0.00 0.00 0.00 3.51
208 209 2.662596 GCCGTCTCCACACCATCA 59.337 61.111 0.00 0.00 0.00 3.07
209 210 1.221840 GCCGTCTCCACACCATCAT 59.778 57.895 0.00 0.00 0.00 2.45
210 211 1.091771 GCCGTCTCCACACCATCATG 61.092 60.000 0.00 0.00 0.00 3.07
211 212 0.462581 CCGTCTCCACACCATCATGG 60.463 60.000 0.54 0.54 45.02 3.66
212 213 1.091771 CGTCTCCACACCATCATGGC 61.092 60.000 2.52 0.00 42.67 4.40
213 214 0.749454 GTCTCCACACCATCATGGCC 60.749 60.000 2.52 0.00 42.67 5.36
214 215 1.820906 CTCCACACCATCATGGCCG 60.821 63.158 2.52 0.00 42.67 6.13
215 216 2.829914 CCACACCATCATGGCCGG 60.830 66.667 2.52 0.00 42.67 6.13
216 217 3.520862 CACACCATCATGGCCGGC 61.521 66.667 21.18 21.18 42.67 6.13
229 230 4.514577 CCGGCGCTGGATCGAGTT 62.515 66.667 32.31 0.00 0.00 3.01
230 231 2.956964 CGGCGCTGGATCGAGTTC 60.957 66.667 8.83 0.00 0.00 3.01
231 232 2.184322 GGCGCTGGATCGAGTTCA 59.816 61.111 7.64 0.00 0.00 3.18
232 233 1.227380 GGCGCTGGATCGAGTTCAT 60.227 57.895 7.64 0.00 0.00 2.57
233 234 1.218230 GGCGCTGGATCGAGTTCATC 61.218 60.000 7.64 0.00 0.00 2.92
234 235 1.218230 GCGCTGGATCGAGTTCATCC 61.218 60.000 0.00 0.00 40.46 3.51
235 236 0.936764 CGCTGGATCGAGTTCATCCG 60.937 60.000 6.60 0.00 42.69 4.18
236 237 1.218230 GCTGGATCGAGTTCATCCGC 61.218 60.000 6.60 0.00 42.69 5.54
237 238 0.103026 CTGGATCGAGTTCATCCGCA 59.897 55.000 0.00 0.00 42.69 5.69
238 239 0.179111 TGGATCGAGTTCATCCGCAC 60.179 55.000 0.00 0.00 42.69 5.34
239 240 0.876342 GGATCGAGTTCATCCGCACC 60.876 60.000 0.00 0.00 30.62 5.01
240 241 0.179111 GATCGAGTTCATCCGCACCA 60.179 55.000 0.00 0.00 0.00 4.17
241 242 0.179100 ATCGAGTTCATCCGCACCAG 60.179 55.000 0.00 0.00 0.00 4.00
242 243 1.811266 CGAGTTCATCCGCACCAGG 60.811 63.158 0.00 0.00 0.00 4.45
243 244 1.596934 GAGTTCATCCGCACCAGGA 59.403 57.895 0.00 0.00 45.54 3.86
244 245 0.460987 GAGTTCATCCGCACCAGGAG 60.461 60.000 0.00 0.00 44.55 3.69
245 246 0.904865 AGTTCATCCGCACCAGGAGA 60.905 55.000 0.00 0.00 44.55 3.71
246 247 0.036388 GTTCATCCGCACCAGGAGAA 60.036 55.000 0.00 0.00 44.55 2.87
247 248 0.250234 TTCATCCGCACCAGGAGAAG 59.750 55.000 0.00 0.00 44.55 2.85
248 249 1.153289 CATCCGCACCAGGAGAAGG 60.153 63.158 0.00 0.00 44.55 3.46
249 250 1.613630 ATCCGCACCAGGAGAAGGT 60.614 57.895 0.00 0.00 44.55 3.50
250 251 0.325296 ATCCGCACCAGGAGAAGGTA 60.325 55.000 0.00 0.00 44.55 3.08
251 252 0.970937 TCCGCACCAGGAGAAGGTAG 60.971 60.000 0.00 0.00 37.23 3.18
252 253 1.517832 CGCACCAGGAGAAGGTAGG 59.482 63.158 0.00 0.00 37.23 3.18
253 254 1.258445 CGCACCAGGAGAAGGTAGGT 61.258 60.000 0.00 0.00 37.23 3.08
254 255 0.984995 GCACCAGGAGAAGGTAGGTT 59.015 55.000 0.00 0.00 37.23 3.50
255 256 1.066071 GCACCAGGAGAAGGTAGGTTC 60.066 57.143 0.00 0.00 37.23 3.62
256 257 2.257207 CACCAGGAGAAGGTAGGTTCA 58.743 52.381 0.00 0.00 37.23 3.18
257 258 2.028020 CACCAGGAGAAGGTAGGTTCAC 60.028 54.545 0.00 0.00 37.23 3.18
258 259 1.555533 CCAGGAGAAGGTAGGTTCACC 59.444 57.143 0.00 0.00 37.43 4.02
259 260 1.204941 CAGGAGAAGGTAGGTTCACCG 59.795 57.143 0.00 0.00 43.84 4.94
260 261 0.535797 GGAGAAGGTAGGTTCACCGG 59.464 60.000 0.00 0.00 43.84 5.28
261 262 1.553706 GAGAAGGTAGGTTCACCGGA 58.446 55.000 9.46 0.00 43.84 5.14
262 263 2.108970 GAGAAGGTAGGTTCACCGGAT 58.891 52.381 9.46 0.00 43.84 4.18
263 264 2.101082 GAGAAGGTAGGTTCACCGGATC 59.899 54.545 9.46 0.00 43.84 3.36
264 265 2.108970 GAAGGTAGGTTCACCGGATCT 58.891 52.381 9.46 0.00 43.84 2.75
265 266 1.777941 AGGTAGGTTCACCGGATCTC 58.222 55.000 9.46 0.00 43.84 2.75
266 267 0.751452 GGTAGGTTCACCGGATCTCC 59.249 60.000 9.46 5.35 42.08 3.71
267 268 1.688627 GGTAGGTTCACCGGATCTCCT 60.689 57.143 9.46 13.05 42.08 3.69
268 269 2.423947 GGTAGGTTCACCGGATCTCCTA 60.424 54.545 9.46 12.00 42.08 2.94
269 270 2.074729 AGGTTCACCGGATCTCCTAG 57.925 55.000 9.46 0.00 42.08 3.02
270 271 0.389757 GGTTCACCGGATCTCCTAGC 59.610 60.000 9.46 0.00 0.00 3.42
271 272 0.389757 GTTCACCGGATCTCCTAGCC 59.610 60.000 9.46 0.00 0.00 3.93
272 273 0.759436 TTCACCGGATCTCCTAGCCC 60.759 60.000 9.46 0.00 0.00 5.19
273 274 1.457643 CACCGGATCTCCTAGCCCA 60.458 63.158 9.46 0.00 0.00 5.36
274 275 1.457831 ACCGGATCTCCTAGCCCAC 60.458 63.158 9.46 0.00 0.00 4.61
275 276 1.152440 CCGGATCTCCTAGCCCACT 60.152 63.158 0.00 0.00 0.00 4.00
276 277 1.182385 CCGGATCTCCTAGCCCACTC 61.182 65.000 0.00 0.00 0.00 3.51
277 278 1.182385 CGGATCTCCTAGCCCACTCC 61.182 65.000 0.00 0.00 0.00 3.85
278 279 1.182385 GGATCTCCTAGCCCACTCCG 61.182 65.000 0.00 0.00 0.00 4.63
279 280 0.178987 GATCTCCTAGCCCACTCCGA 60.179 60.000 0.00 0.00 0.00 4.55
280 281 0.485099 ATCTCCTAGCCCACTCCGAT 59.515 55.000 0.00 0.00 0.00 4.18
281 282 0.178987 TCTCCTAGCCCACTCCGATC 60.179 60.000 0.00 0.00 0.00 3.69
282 283 0.178975 CTCCTAGCCCACTCCGATCT 60.179 60.000 0.00 0.00 0.00 2.75
283 284 1.074084 CTCCTAGCCCACTCCGATCTA 59.926 57.143 0.00 0.00 0.00 1.98
284 285 1.497716 TCCTAGCCCACTCCGATCTAA 59.502 52.381 0.00 0.00 0.00 2.10
285 286 1.889829 CCTAGCCCACTCCGATCTAAG 59.110 57.143 0.00 0.00 0.00 2.18
286 287 1.889829 CTAGCCCACTCCGATCTAAGG 59.110 57.143 0.00 0.00 0.00 2.69
287 288 0.032017 AGCCCACTCCGATCTAAGGT 60.032 55.000 0.00 0.00 0.00 3.50
288 289 0.389757 GCCCACTCCGATCTAAGGTC 59.610 60.000 0.00 0.00 0.00 3.85
289 290 1.041437 CCCACTCCGATCTAAGGTCC 58.959 60.000 0.00 0.00 0.00 4.46
290 291 1.411787 CCCACTCCGATCTAAGGTCCT 60.412 57.143 0.00 0.00 0.00 3.85
291 292 2.158505 CCCACTCCGATCTAAGGTCCTA 60.159 54.545 0.00 0.00 0.00 2.94
292 293 3.500654 CCCACTCCGATCTAAGGTCCTAT 60.501 52.174 0.00 0.00 0.00 2.57
293 294 3.759618 CCACTCCGATCTAAGGTCCTATC 59.240 52.174 0.00 0.00 0.00 2.08
351 352 0.243907 CGCCGCTATAGCACCAGTAT 59.756 55.000 23.99 0.00 42.21 2.12
383 384 7.169645 TCAAAGAAAGCTGCATTTGTATTCAAC 59.830 33.333 14.08 0.00 34.88 3.18
509 510 4.299547 TGCGGACAAGCGCTCAGT 62.300 61.111 12.06 13.51 40.67 3.41
528 529 3.693382 TACGTGGCACCGATCTGCG 62.693 63.158 12.86 0.00 38.12 5.18
551 552 0.976641 CTCTGGCTCACTGGTTACCA 59.023 55.000 3.29 3.29 0.00 3.25
621 622 6.018262 CGAATTAGGGCAAGATCGATACAAAA 60.018 38.462 0.00 0.00 33.50 2.44
673 684 1.338136 CCAGAACCATCCGGCCTAGT 61.338 60.000 0.00 0.00 34.57 2.57
674 685 1.410004 CAGAACCATCCGGCCTAGTA 58.590 55.000 0.00 0.00 34.57 1.82
675 686 1.068741 CAGAACCATCCGGCCTAGTAC 59.931 57.143 0.00 0.00 34.57 2.73
706 719 2.211375 ACACAGTGTGAGGCAGACA 58.789 52.632 29.58 0.00 36.96 3.41
708 721 1.068083 ACAGTGTGAGGCAGACACG 59.932 57.895 11.86 9.89 46.89 4.49
725 738 4.477975 GGACACGGAGGCGACGAG 62.478 72.222 10.63 5.44 34.93 4.18
726 739 4.477975 GACACGGAGGCGACGAGG 62.478 72.222 10.63 5.15 34.93 4.63
889 903 2.583441 CCTCTCCCTCCACAACGCA 61.583 63.158 0.00 0.00 0.00 5.24
890 904 1.374758 CTCTCCCTCCACAACGCAC 60.375 63.158 0.00 0.00 0.00 5.34
891 905 1.821061 CTCTCCCTCCACAACGCACT 61.821 60.000 0.00 0.00 0.00 4.40
892 906 1.374758 CTCCCTCCACAACGCACTC 60.375 63.158 0.00 0.00 0.00 3.51
893 907 2.358737 CCCTCCACAACGCACTCC 60.359 66.667 0.00 0.00 0.00 3.85
894 908 2.358737 CCTCCACAACGCACTCCC 60.359 66.667 0.00 0.00 0.00 4.30
895 909 2.743718 CTCCACAACGCACTCCCT 59.256 61.111 0.00 0.00 0.00 4.20
896 910 1.374758 CTCCACAACGCACTCCCTC 60.375 63.158 0.00 0.00 0.00 4.30
988 1002 2.424842 AATTCCCTGAACCTGCGCCA 62.425 55.000 4.18 0.00 0.00 5.69
1345 1359 5.127519 TCCTTTTATGTACTGCTACCGCTAA 59.872 40.000 0.00 0.00 36.97 3.09
1347 1361 6.482308 CCTTTTATGTACTGCTACCGCTAATT 59.518 38.462 0.00 0.00 36.97 1.40
1591 1605 7.886629 TTGAAAGATGAAGGATTCCCATAAG 57.113 36.000 0.00 0.00 46.93 1.73
1664 1723 7.509659 ACTCCCTCCGTATCAAAATATAAGACT 59.490 37.037 0.00 0.00 0.00 3.24
1665 1724 7.667557 TCCCTCCGTATCAAAATATAAGACTG 58.332 38.462 0.00 0.00 0.00 3.51
1666 1725 6.369065 CCCTCCGTATCAAAATATAAGACTGC 59.631 42.308 0.00 0.00 0.00 4.40
1667 1726 6.369065 CCTCCGTATCAAAATATAAGACTGCC 59.631 42.308 0.00 0.00 0.00 4.85
1668 1727 7.062749 TCCGTATCAAAATATAAGACTGCCT 57.937 36.000 0.00 0.00 0.00 4.75
1669 1728 7.506114 TCCGTATCAAAATATAAGACTGCCTT 58.494 34.615 0.00 0.00 38.87 4.35
1670 1729 7.990886 TCCGTATCAAAATATAAGACTGCCTTT 59.009 33.333 0.00 0.00 36.34 3.11
1671 1730 8.621286 CCGTATCAAAATATAAGACTGCCTTTT 58.379 33.333 0.00 0.00 36.34 2.27
1672 1731 9.438291 CGTATCAAAATATAAGACTGCCTTTTG 57.562 33.333 0.00 0.00 36.34 2.44
1675 1734 8.402798 TCAAAATATAAGACTGCCTTTTGACA 57.597 30.769 0.00 0.00 37.56 3.58
1676 1735 8.296713 TCAAAATATAAGACTGCCTTTTGACAC 58.703 33.333 0.00 0.00 37.56 3.67
1677 1736 8.299570 CAAAATATAAGACTGCCTTTTGACACT 58.700 33.333 0.00 0.00 36.28 3.55
1678 1737 9.515226 AAAATATAAGACTGCCTTTTGACACTA 57.485 29.630 0.00 0.00 36.34 2.74
1679 1738 9.686683 AAATATAAGACTGCCTTTTGACACTAT 57.313 29.630 0.00 0.00 36.34 2.12
1680 1739 9.686683 AATATAAGACTGCCTTTTGACACTATT 57.313 29.630 0.00 0.00 36.34 1.73
1684 1743 8.723942 AAGACTGCCTTTTGACACTATTATAG 57.276 34.615 0.00 0.00 0.00 1.31
1685 1744 7.852263 AGACTGCCTTTTGACACTATTATAGT 58.148 34.615 0.00 0.00 40.28 2.12
1807 1869 3.205733 TGGGGATATTAAACCTGGGTTCC 59.794 47.826 0.00 0.00 37.35 3.62
1832 1894 7.393234 CCCAATCTACTCCTGTGTGAAATTTTA 59.607 37.037 0.00 0.00 0.00 1.52
1875 1937 2.101783 TCCGTGGCGAAGGAAATACTA 58.898 47.619 0.00 0.00 32.86 1.82
1945 2007 4.398549 TTGTCTTTTTCGCCACGAATAG 57.601 40.909 2.96 4.94 45.28 1.73
1946 2008 3.395639 TGTCTTTTTCGCCACGAATAGT 58.604 40.909 2.96 0.00 45.28 2.12
1991 2053 0.029834 TTTACGCGGGAGTAGATCGC 59.970 55.000 12.47 0.00 45.15 4.58
1999 2061 0.458669 GGAGTAGATCGCGAACCCAA 59.541 55.000 15.24 0.00 0.00 4.12
2078 2141 1.344065 ATGTTCGTGTAGGGGTGTGA 58.656 50.000 0.00 0.00 0.00 3.58
2118 2181 1.754234 CGCTTCCATCCAAAGGGGG 60.754 63.158 0.00 0.00 37.22 5.40
2356 2517 3.126073 CCTTTGACTTGCTTTCTTTGGC 58.874 45.455 0.00 0.00 0.00 4.52
2425 2587 1.135527 CGCGGATCTTAGTGGGTTACA 59.864 52.381 0.00 0.00 0.00 2.41
2785 3078 1.486211 AGGTAGCCATTAGTCGCAGT 58.514 50.000 0.00 0.00 0.00 4.40
3165 3469 2.027385 TCTCCAGATGGACATCGAGTG 58.973 52.381 13.33 5.51 42.48 3.51
3237 3541 1.908619 TCTGGAGCAGCATCTGGTAAA 59.091 47.619 0.00 0.00 42.53 2.01
3403 3709 6.478016 TGTCATTCGAGCTGAGAAATTCATAG 59.522 38.462 0.00 0.00 34.68 2.23
3411 3717 7.150783 AGCTGAGAAATTCATAGGTTGTTTC 57.849 36.000 0.00 0.00 34.68 2.78
3608 3914 9.436957 GAGTTTTCTTTGAGGTCTACATGAATA 57.563 33.333 0.00 0.00 0.00 1.75
3609 3915 9.965902 AGTTTTCTTTGAGGTCTACATGAATAT 57.034 29.630 0.00 0.00 0.00 1.28
3865 4171 6.072838 TGCTGAATTTCTGTTGAGTCTTGATC 60.073 38.462 5.36 0.00 0.00 2.92
4211 4517 8.239998 CAGATTTCTTCCCTTGTTCACTAAATC 58.760 37.037 0.00 0.00 33.24 2.17
4287 4593 4.701765 CAGAAGTATCTGCTGCTAACCAT 58.298 43.478 0.00 0.00 46.11 3.55
4502 4808 6.946009 CCCTGGACTAAGTATTTCCTTTTTCA 59.054 38.462 0.00 0.00 0.00 2.69
4503 4809 7.450323 CCCTGGACTAAGTATTTCCTTTTTCAA 59.550 37.037 0.00 0.00 0.00 2.69
4580 4887 4.574828 AGTAAATATTTCCTTGCGCGTGAT 59.425 37.500 8.43 0.00 0.00 3.06
4599 4906 5.333645 CGTGATTTTTGATGGATCGATCTCC 60.334 44.000 23.96 11.68 35.74 3.71
4975 5289 2.593956 GGGTCAAGCTTCTCCGGGT 61.594 63.158 0.00 0.00 0.00 5.28
5007 5321 1.468520 GAGCGTGCAAGAATAGCCAAA 59.531 47.619 2.99 0.00 0.00 3.28
5008 5322 2.094675 AGCGTGCAAGAATAGCCAAAT 58.905 42.857 2.99 0.00 0.00 2.32
5035 5349 1.962100 GTCTAATCTGGTACCCCCTCG 59.038 57.143 10.07 0.00 0.00 4.63
5499 5818 6.982160 TCATTCTTAATGATTTCCCCCATG 57.018 37.500 0.00 0.00 42.69 3.66
5500 5819 6.681538 TCATTCTTAATGATTTCCCCCATGA 58.318 36.000 0.00 0.00 42.69 3.07
5501 5820 7.131451 TCATTCTTAATGATTTCCCCCATGAA 58.869 34.615 0.00 0.00 42.69 2.57
5502 5821 7.622878 TCATTCTTAATGATTTCCCCCATGAAA 59.377 33.333 0.00 0.00 42.69 2.69
5503 5822 7.422465 TTCTTAATGATTTCCCCCATGAAAG 57.578 36.000 0.00 0.00 37.63 2.62
5504 5823 5.363580 TCTTAATGATTTCCCCCATGAAAGC 59.636 40.000 0.00 0.00 40.21 3.51
5505 5824 2.925966 TGATTTCCCCCATGAAAGCT 57.074 45.000 0.00 0.00 40.39 3.74
5506 5825 3.188880 TGATTTCCCCCATGAAAGCTT 57.811 42.857 0.00 0.00 40.39 3.74
5507 5826 3.519667 TGATTTCCCCCATGAAAGCTTT 58.480 40.909 12.53 12.53 40.39 3.51
5508 5827 3.909364 TGATTTCCCCCATGAAAGCTTTT 59.091 39.130 14.05 0.00 40.39 2.27
5509 5828 4.350520 TGATTTCCCCCATGAAAGCTTTTT 59.649 37.500 14.05 1.23 40.39 1.94
5546 5865 3.701040 CCCCATAAAGCTAGTGCAACAAT 59.299 43.478 0.00 0.00 41.43 2.71
5561 5880 2.380084 ACAATCGTAGCGATGGTGTT 57.620 45.000 10.32 0.00 46.94 3.32
5562 5881 1.999735 ACAATCGTAGCGATGGTGTTG 59.000 47.619 10.32 5.71 46.94 3.33
5563 5882 1.999735 CAATCGTAGCGATGGTGTTGT 59.000 47.619 4.75 0.00 46.30 3.32
5564 5883 1.922570 ATCGTAGCGATGGTGTTGTC 58.077 50.000 3.08 0.00 45.24 3.18
5746 6074 7.035612 CGTAGCATGCATATATAGGTTTCTGA 58.964 38.462 21.98 0.00 0.00 3.27
5747 6075 7.545615 CGTAGCATGCATATATAGGTTTCTGAA 59.454 37.037 21.98 0.00 0.00 3.02
5748 6076 7.678947 AGCATGCATATATAGGTTTCTGAAC 57.321 36.000 21.98 0.00 34.96 3.18
5749 6077 6.369890 AGCATGCATATATAGGTTTCTGAACG 59.630 38.462 21.98 0.00 36.61 3.95
5752 6080 5.465390 TGCATATATAGGTTTCTGAACGTGC 59.535 40.000 0.00 0.00 36.61 5.34
5753 6081 5.388475 GCATATATAGGTTTCTGAACGTGCG 60.388 44.000 0.00 0.00 36.61 5.34
5754 6082 2.450609 ATAGGTTTCTGAACGTGCGT 57.549 45.000 0.00 0.00 36.61 5.24
5755 6083 3.581024 ATAGGTTTCTGAACGTGCGTA 57.419 42.857 0.00 0.00 36.61 4.42
5756 6084 1.494824 AGGTTTCTGAACGTGCGTAC 58.505 50.000 0.00 0.00 36.61 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.948004 TATTGTGGTTGGGCGCCCC 62.948 63.158 41.75 27.38 45.71 5.80
3 4 1.756561 ATATTGTGGTTGGGCGCCC 60.757 57.895 39.40 39.40 0.00 6.13
4 5 1.437160 CATATTGTGGTTGGGCGCC 59.563 57.895 21.18 21.18 0.00 6.53
5 6 1.437160 CCATATTGTGGTTGGGCGC 59.563 57.895 0.00 0.00 43.44 6.53
14 15 1.688197 GGGCCCATCAACCATATTGTG 59.312 52.381 19.95 0.00 0.00 3.33
15 16 1.412937 GGGGCCCATCAACCATATTGT 60.413 52.381 26.86 0.00 0.00 2.71
16 17 1.133072 AGGGGCCCATCAACCATATTG 60.133 52.381 27.72 0.00 0.00 1.90
17 18 1.133072 CAGGGGCCCATCAACCATATT 60.133 52.381 27.72 0.00 0.00 1.28
18 19 0.484212 CAGGGGCCCATCAACCATAT 59.516 55.000 27.72 0.00 0.00 1.78
19 20 0.923729 ACAGGGGCCCATCAACCATA 60.924 55.000 27.72 0.00 0.00 2.74
20 21 2.228841 GACAGGGGCCCATCAACCAT 62.229 60.000 27.72 0.00 0.00 3.55
21 22 2.863484 ACAGGGGCCCATCAACCA 60.863 61.111 27.72 0.00 0.00 3.67
22 23 2.043953 GACAGGGGCCCATCAACC 60.044 66.667 27.72 4.38 0.00 3.77
23 24 1.678970 GTGACAGGGGCCCATCAAC 60.679 63.158 27.72 17.05 0.00 3.18
24 25 2.763215 GTGACAGGGGCCCATCAA 59.237 61.111 27.72 9.77 0.00 2.57
25 26 3.716195 CGTGACAGGGGCCCATCA 61.716 66.667 27.72 24.44 0.00 3.07
36 37 0.109039 TTATGTAGCGCTGCGTGACA 60.109 50.000 27.69 25.34 0.00 3.58
37 38 0.996462 TTTATGTAGCGCTGCGTGAC 59.004 50.000 27.69 20.33 0.00 3.67
38 39 1.715993 TTTTATGTAGCGCTGCGTGA 58.284 45.000 27.69 18.51 0.00 4.35
39 40 2.430956 CTTTTTATGTAGCGCTGCGTG 58.569 47.619 27.69 8.86 0.00 5.34
40 41 1.396996 CCTTTTTATGTAGCGCTGCGT 59.603 47.619 23.71 23.71 0.00 5.24
41 42 1.396996 ACCTTTTTATGTAGCGCTGCG 59.603 47.619 22.90 19.17 0.00 5.18
42 43 2.477863 CCACCTTTTTATGTAGCGCTGC 60.478 50.000 22.90 21.06 0.00 5.25
43 44 2.097466 CCCACCTTTTTATGTAGCGCTG 59.903 50.000 22.90 0.53 0.00 5.18
44 45 2.365582 CCCACCTTTTTATGTAGCGCT 58.634 47.619 17.26 17.26 0.00 5.92
45 46 1.404035 CCCCACCTTTTTATGTAGCGC 59.596 52.381 0.00 0.00 0.00 5.92
46 47 2.021457 CCCCCACCTTTTTATGTAGCG 58.979 52.381 0.00 0.00 0.00 4.26
47 48 1.754803 GCCCCCACCTTTTTATGTAGC 59.245 52.381 0.00 0.00 0.00 3.58
48 49 2.384828 GGCCCCCACCTTTTTATGTAG 58.615 52.381 0.00 0.00 0.00 2.74
49 50 1.341187 CGGCCCCCACCTTTTTATGTA 60.341 52.381 0.00 0.00 0.00 2.29
50 51 0.613572 CGGCCCCCACCTTTTTATGT 60.614 55.000 0.00 0.00 0.00 2.29
51 52 1.326951 CCGGCCCCCACCTTTTTATG 61.327 60.000 0.00 0.00 0.00 1.90
52 53 1.001120 CCGGCCCCCACCTTTTTAT 59.999 57.895 0.00 0.00 0.00 1.40
53 54 2.441505 CCGGCCCCCACCTTTTTA 59.558 61.111 0.00 0.00 0.00 1.52
69 70 3.264897 CTCGTAGTGCATGCCGCC 61.265 66.667 16.68 2.88 41.33 6.13
70 71 3.264897 CCTCGTAGTGCATGCCGC 61.265 66.667 16.68 8.31 42.89 6.53
71 72 1.421410 GAACCTCGTAGTGCATGCCG 61.421 60.000 16.68 11.60 0.00 5.69
72 73 0.391130 TGAACCTCGTAGTGCATGCC 60.391 55.000 16.68 6.65 0.00 4.40
73 74 0.721718 GTGAACCTCGTAGTGCATGC 59.278 55.000 11.82 11.82 0.00 4.06
74 75 1.359848 GGTGAACCTCGTAGTGCATG 58.640 55.000 0.00 0.00 0.00 4.06
75 76 0.108804 CGGTGAACCTCGTAGTGCAT 60.109 55.000 0.00 0.00 0.00 3.96
76 77 1.287815 CGGTGAACCTCGTAGTGCA 59.712 57.895 0.00 0.00 0.00 4.57
77 78 2.092882 GCGGTGAACCTCGTAGTGC 61.093 63.158 0.00 0.00 0.00 4.40
78 79 1.800315 CGCGGTGAACCTCGTAGTG 60.800 63.158 0.00 0.00 39.22 2.74
79 80 2.564975 CGCGGTGAACCTCGTAGT 59.435 61.111 0.00 0.00 39.22 2.73
84 85 3.723348 GGCAACGCGGTGAACCTC 61.723 66.667 31.65 9.59 0.00 3.85
85 86 4.555709 TGGCAACGCGGTGAACCT 62.556 61.111 31.65 0.00 42.51 3.50
86 87 4.025401 CTGGCAACGCGGTGAACC 62.025 66.667 31.65 21.40 42.51 3.62
87 88 4.025401 CCTGGCAACGCGGTGAAC 62.025 66.667 31.65 20.39 42.51 3.18
100 101 3.204467 TTTTCGGTGGGGAGCCTGG 62.204 63.158 0.00 0.00 0.00 4.45
101 102 1.971695 GTTTTCGGTGGGGAGCCTG 60.972 63.158 0.00 0.00 0.00 4.85
102 103 2.434774 GTTTTCGGTGGGGAGCCT 59.565 61.111 0.00 0.00 0.00 4.58
103 104 2.675423 GGTTTTCGGTGGGGAGCC 60.675 66.667 0.00 0.00 0.00 4.70
104 105 2.675423 GGGTTTTCGGTGGGGAGC 60.675 66.667 0.00 0.00 0.00 4.70
105 106 2.035155 GGGGTTTTCGGTGGGGAG 59.965 66.667 0.00 0.00 0.00 4.30
106 107 3.956314 CGGGGTTTTCGGTGGGGA 61.956 66.667 0.00 0.00 0.00 4.81
107 108 3.956314 TCGGGGTTTTCGGTGGGG 61.956 66.667 0.00 0.00 0.00 4.96
108 109 2.670592 GTCGGGGTTTTCGGTGGG 60.671 66.667 0.00 0.00 0.00 4.61
109 110 2.670592 GGTCGGGGTTTTCGGTGG 60.671 66.667 0.00 0.00 0.00 4.61
110 111 2.670592 GGGTCGGGGTTTTCGGTG 60.671 66.667 0.00 0.00 0.00 4.94
111 112 4.318949 CGGGTCGGGGTTTTCGGT 62.319 66.667 0.00 0.00 0.00 4.69
112 113 3.319441 ATCGGGTCGGGGTTTTCGG 62.319 63.158 0.00 0.00 0.00 4.30
113 114 1.812507 GATCGGGTCGGGGTTTTCG 60.813 63.158 0.00 0.00 0.00 3.46
114 115 0.826062 TAGATCGGGTCGGGGTTTTC 59.174 55.000 0.00 0.00 0.00 2.29
115 116 0.828677 CTAGATCGGGTCGGGGTTTT 59.171 55.000 0.00 0.00 0.00 2.43
116 117 1.047034 CCTAGATCGGGTCGGGGTTT 61.047 60.000 0.00 0.00 0.00 3.27
117 118 1.457079 CCTAGATCGGGTCGGGGTT 60.457 63.158 0.00 0.00 0.00 4.11
118 119 2.197875 CCTAGATCGGGTCGGGGT 59.802 66.667 0.00 0.00 0.00 4.95
119 120 1.902432 GACCTAGATCGGGTCGGGG 60.902 68.421 19.72 5.03 42.84 5.73
120 121 3.760917 GACCTAGATCGGGTCGGG 58.239 66.667 19.72 6.25 42.84 5.14
124 125 0.890090 GCGCTAGACCTAGATCGGGT 60.890 60.000 12.14 12.14 40.13 5.28
125 126 0.606944 AGCGCTAGACCTAGATCGGG 60.607 60.000 8.99 6.28 35.21 5.14
126 127 0.519519 CAGCGCTAGACCTAGATCGG 59.480 60.000 10.99 0.00 35.21 4.18
127 128 1.195900 GTCAGCGCTAGACCTAGATCG 59.804 57.143 21.86 3.19 35.21 3.69
128 129 2.222886 TGTCAGCGCTAGACCTAGATC 58.777 52.381 26.34 9.60 35.21 2.75
129 130 2.226330 CTGTCAGCGCTAGACCTAGAT 58.774 52.381 26.34 0.00 35.21 1.98
130 131 1.065345 ACTGTCAGCGCTAGACCTAGA 60.065 52.381 26.34 11.35 35.21 2.43
131 132 1.064803 CACTGTCAGCGCTAGACCTAG 59.935 57.143 26.34 21.75 35.15 3.02
132 133 1.095600 CACTGTCAGCGCTAGACCTA 58.904 55.000 26.34 14.58 35.15 3.08
133 134 0.609406 TCACTGTCAGCGCTAGACCT 60.609 55.000 26.34 15.00 35.15 3.85
134 135 0.456995 GTCACTGTCAGCGCTAGACC 60.457 60.000 26.34 13.74 35.15 3.85
135 136 0.794981 CGTCACTGTCAGCGCTAGAC 60.795 60.000 24.18 24.18 36.55 2.59
136 137 1.502190 CGTCACTGTCAGCGCTAGA 59.498 57.895 10.99 7.62 0.00 2.43
137 138 1.515088 CCGTCACTGTCAGCGCTAG 60.515 63.158 10.99 6.91 0.00 3.42
138 139 2.566529 CCGTCACTGTCAGCGCTA 59.433 61.111 10.99 0.00 0.00 4.26
139 140 4.363990 CCCGTCACTGTCAGCGCT 62.364 66.667 2.64 2.64 0.00 5.92
140 141 3.858868 TTCCCGTCACTGTCAGCGC 62.859 63.158 0.00 0.00 0.00 5.92
141 142 1.300620 TTTCCCGTCACTGTCAGCG 60.301 57.895 0.00 0.00 0.00 5.18
142 143 0.249911 AGTTTCCCGTCACTGTCAGC 60.250 55.000 0.00 0.00 0.00 4.26
143 144 1.605712 GGAGTTTCCCGTCACTGTCAG 60.606 57.143 0.00 0.00 0.00 3.51
144 145 0.391597 GGAGTTTCCCGTCACTGTCA 59.608 55.000 0.00 0.00 0.00 3.58
145 146 0.666577 CGGAGTTTCCCGTCACTGTC 60.667 60.000 0.00 0.00 44.23 3.51
146 147 1.366366 CGGAGTTTCCCGTCACTGT 59.634 57.895 0.00 0.00 44.23 3.55
147 148 4.261888 CGGAGTTTCCCGTCACTG 57.738 61.111 0.00 0.00 44.23 3.66
154 155 2.671963 GTGGTGGCGGAGTTTCCC 60.672 66.667 0.00 0.00 31.13 3.97
155 156 2.671963 GGTGGTGGCGGAGTTTCC 60.672 66.667 0.00 0.00 0.00 3.13
156 157 1.303317 ATGGTGGTGGCGGAGTTTC 60.303 57.895 0.00 0.00 0.00 2.78
157 158 1.303317 GATGGTGGTGGCGGAGTTT 60.303 57.895 0.00 0.00 0.00 2.66
158 159 2.185310 GAGATGGTGGTGGCGGAGTT 62.185 60.000 0.00 0.00 0.00 3.01
159 160 2.607750 AGATGGTGGTGGCGGAGT 60.608 61.111 0.00 0.00 0.00 3.85
160 161 2.184020 TTGAGATGGTGGTGGCGGAG 62.184 60.000 0.00 0.00 0.00 4.63
161 162 1.561769 ATTGAGATGGTGGTGGCGGA 61.562 55.000 0.00 0.00 0.00 5.54
162 163 1.077501 ATTGAGATGGTGGTGGCGG 60.078 57.895 0.00 0.00 0.00 6.13
163 164 1.097547 GGATTGAGATGGTGGTGGCG 61.098 60.000 0.00 0.00 0.00 5.69
164 165 0.034186 TGGATTGAGATGGTGGTGGC 60.034 55.000 0.00 0.00 0.00 5.01
165 166 1.004628 TGTGGATTGAGATGGTGGTGG 59.995 52.381 0.00 0.00 0.00 4.61
166 167 2.495155 TGTGGATTGAGATGGTGGTG 57.505 50.000 0.00 0.00 0.00 4.17
167 168 2.420547 CGATGTGGATTGAGATGGTGGT 60.421 50.000 0.00 0.00 0.00 4.16
168 169 2.216046 CGATGTGGATTGAGATGGTGG 58.784 52.381 0.00 0.00 0.00 4.61
169 170 1.600957 GCGATGTGGATTGAGATGGTG 59.399 52.381 0.00 0.00 0.00 4.17
170 171 1.475751 GGCGATGTGGATTGAGATGGT 60.476 52.381 0.00 0.00 0.00 3.55
171 172 1.233019 GGCGATGTGGATTGAGATGG 58.767 55.000 0.00 0.00 0.00 3.51
172 173 0.863799 CGGCGATGTGGATTGAGATG 59.136 55.000 0.00 0.00 0.00 2.90
173 174 0.882042 GCGGCGATGTGGATTGAGAT 60.882 55.000 12.98 0.00 0.00 2.75
174 175 1.521457 GCGGCGATGTGGATTGAGA 60.521 57.895 12.98 0.00 0.00 3.27
175 176 2.537560 GGCGGCGATGTGGATTGAG 61.538 63.158 12.98 0.00 0.00 3.02
176 177 2.513666 GGCGGCGATGTGGATTGA 60.514 61.111 12.98 0.00 0.00 2.57
177 178 3.940640 CGGCGGCGATGTGGATTG 61.941 66.667 29.19 0.00 0.00 2.67
178 179 4.467084 ACGGCGGCGATGTGGATT 62.467 61.111 38.93 10.08 0.00 3.01
179 180 4.891727 GACGGCGGCGATGTGGAT 62.892 66.667 38.93 14.02 0.00 3.41
189 190 4.082523 ATGGTGTGGAGACGGCGG 62.083 66.667 13.24 0.00 0.00 6.13
190 191 2.509336 GATGGTGTGGAGACGGCG 60.509 66.667 4.80 4.80 0.00 6.46
191 192 1.091771 CATGATGGTGTGGAGACGGC 61.092 60.000 0.00 0.00 0.00 5.68
192 193 0.462581 CCATGATGGTGTGGAGACGG 60.463 60.000 2.54 0.00 37.72 4.79
193 194 1.091771 GCCATGATGGTGTGGAGACG 61.092 60.000 13.84 0.00 40.46 4.18
194 195 0.749454 GGCCATGATGGTGTGGAGAC 60.749 60.000 13.84 0.00 40.46 3.36
195 196 1.609239 GGCCATGATGGTGTGGAGA 59.391 57.895 13.84 0.00 40.46 3.71
196 197 1.820906 CGGCCATGATGGTGTGGAG 60.821 63.158 13.84 0.00 40.46 3.86
197 198 2.271821 CGGCCATGATGGTGTGGA 59.728 61.111 13.84 0.00 40.46 4.02
198 199 2.829914 CCGGCCATGATGGTGTGG 60.830 66.667 13.84 8.71 40.46 4.17
199 200 3.520862 GCCGGCCATGATGGTGTG 61.521 66.667 18.11 3.17 40.46 3.82
212 213 4.514577 AACTCGATCCAGCGCCGG 62.515 66.667 2.25 2.25 0.00 6.13
213 214 2.956964 GAACTCGATCCAGCGCCG 60.957 66.667 2.29 0.00 0.00 6.46
214 215 1.218230 GATGAACTCGATCCAGCGCC 61.218 60.000 2.29 0.00 0.00 6.53
215 216 1.218230 GGATGAACTCGATCCAGCGC 61.218 60.000 0.00 0.00 39.49 5.92
216 217 0.936764 CGGATGAACTCGATCCAGCG 60.937 60.000 3.08 0.00 39.65 5.18
217 218 1.218230 GCGGATGAACTCGATCCAGC 61.218 60.000 3.08 3.64 39.65 4.85
218 219 0.103026 TGCGGATGAACTCGATCCAG 59.897 55.000 3.08 0.00 39.65 3.86
219 220 0.179111 GTGCGGATGAACTCGATCCA 60.179 55.000 3.08 0.00 39.65 3.41
220 221 0.876342 GGTGCGGATGAACTCGATCC 60.876 60.000 0.00 0.00 36.73 3.36
221 222 0.179111 TGGTGCGGATGAACTCGATC 60.179 55.000 0.00 0.00 0.00 3.69
222 223 0.179100 CTGGTGCGGATGAACTCGAT 60.179 55.000 0.00 0.00 0.00 3.59
223 224 1.215382 CTGGTGCGGATGAACTCGA 59.785 57.895 0.00 0.00 0.00 4.04
224 225 1.811266 CCTGGTGCGGATGAACTCG 60.811 63.158 0.00 0.00 0.00 4.18
225 226 0.460987 CTCCTGGTGCGGATGAACTC 60.461 60.000 0.00 0.00 31.43 3.01
226 227 0.904865 TCTCCTGGTGCGGATGAACT 60.905 55.000 0.00 0.00 31.43 3.01
227 228 0.036388 TTCTCCTGGTGCGGATGAAC 60.036 55.000 0.00 0.00 31.43 3.18
228 229 0.250234 CTTCTCCTGGTGCGGATGAA 59.750 55.000 0.00 0.00 31.43 2.57
229 230 1.617018 CCTTCTCCTGGTGCGGATGA 61.617 60.000 0.00 0.00 31.43 2.92
230 231 1.153289 CCTTCTCCTGGTGCGGATG 60.153 63.158 0.00 0.00 31.43 3.51
231 232 0.325296 TACCTTCTCCTGGTGCGGAT 60.325 55.000 9.79 0.49 38.42 4.18
232 233 0.970937 CTACCTTCTCCTGGTGCGGA 60.971 60.000 9.79 0.00 38.42 5.54
233 234 1.517832 CTACCTTCTCCTGGTGCGG 59.482 63.158 0.00 0.00 38.42 5.69
234 235 1.258445 ACCTACCTTCTCCTGGTGCG 61.258 60.000 0.00 0.00 38.42 5.34
235 236 0.984995 AACCTACCTTCTCCTGGTGC 59.015 55.000 0.00 0.00 38.42 5.01
236 237 2.028020 GTGAACCTACCTTCTCCTGGTG 60.028 54.545 0.00 0.00 38.42 4.17
237 238 2.258109 GTGAACCTACCTTCTCCTGGT 58.742 52.381 0.00 0.00 41.28 4.00
238 239 1.555533 GGTGAACCTACCTTCTCCTGG 59.444 57.143 0.00 0.00 37.74 4.45
239 240 1.204941 CGGTGAACCTACCTTCTCCTG 59.795 57.143 0.00 0.00 38.62 3.86
240 241 1.558233 CGGTGAACCTACCTTCTCCT 58.442 55.000 0.00 0.00 38.62 3.69
241 242 0.535797 CCGGTGAACCTACCTTCTCC 59.464 60.000 0.00 0.00 38.62 3.71
242 243 1.553706 TCCGGTGAACCTACCTTCTC 58.446 55.000 0.00 0.00 38.62 2.87
243 244 2.108970 GATCCGGTGAACCTACCTTCT 58.891 52.381 0.00 0.00 38.62 2.85
244 245 2.101082 GAGATCCGGTGAACCTACCTTC 59.899 54.545 0.00 0.00 38.62 3.46
245 246 2.108970 GAGATCCGGTGAACCTACCTT 58.891 52.381 0.00 0.00 38.62 3.50
246 247 1.688627 GGAGATCCGGTGAACCTACCT 60.689 57.143 0.00 0.00 38.62 3.08
247 248 0.751452 GGAGATCCGGTGAACCTACC 59.249 60.000 0.00 0.00 37.37 3.18
248 249 1.777941 AGGAGATCCGGTGAACCTAC 58.222 55.000 0.00 0.00 42.08 3.18
249 250 2.752154 GCTAGGAGATCCGGTGAACCTA 60.752 54.545 0.00 10.26 42.08 3.08
250 251 2.030045 GCTAGGAGATCCGGTGAACCT 61.030 57.143 0.00 9.62 42.08 3.50
251 252 0.389757 GCTAGGAGATCCGGTGAACC 59.610 60.000 0.00 1.64 42.08 3.62
252 253 0.389757 GGCTAGGAGATCCGGTGAAC 59.610 60.000 0.00 0.00 42.08 3.18
253 254 0.759436 GGGCTAGGAGATCCGGTGAA 60.759 60.000 0.00 0.00 42.08 3.18
254 255 1.152525 GGGCTAGGAGATCCGGTGA 60.153 63.158 0.00 0.00 42.08 4.02
255 256 1.457643 TGGGCTAGGAGATCCGGTG 60.458 63.158 0.00 0.00 42.08 4.94
256 257 1.457831 GTGGGCTAGGAGATCCGGT 60.458 63.158 0.00 0.00 42.08 5.28
257 258 1.152440 AGTGGGCTAGGAGATCCGG 60.152 63.158 0.00 0.00 42.08 5.14
258 259 1.182385 GGAGTGGGCTAGGAGATCCG 61.182 65.000 0.00 0.00 42.08 4.18
259 260 1.182385 CGGAGTGGGCTAGGAGATCC 61.182 65.000 0.00 0.00 0.00 3.36
260 261 0.178987 TCGGAGTGGGCTAGGAGATC 60.179 60.000 0.00 0.00 0.00 2.75
261 262 0.485099 ATCGGAGTGGGCTAGGAGAT 59.515 55.000 0.00 0.00 0.00 2.75
262 263 0.178987 GATCGGAGTGGGCTAGGAGA 60.179 60.000 0.00 0.00 0.00 3.71
263 264 0.178975 AGATCGGAGTGGGCTAGGAG 60.179 60.000 0.00 0.00 0.00 3.69
264 265 1.146452 TAGATCGGAGTGGGCTAGGA 58.854 55.000 0.00 0.00 0.00 2.94
265 266 1.889829 CTTAGATCGGAGTGGGCTAGG 59.110 57.143 0.00 0.00 0.00 3.02
266 267 1.889829 CCTTAGATCGGAGTGGGCTAG 59.110 57.143 0.00 0.00 0.00 3.42
267 268 1.217183 ACCTTAGATCGGAGTGGGCTA 59.783 52.381 0.00 0.00 0.00 3.93
268 269 0.032017 ACCTTAGATCGGAGTGGGCT 60.032 55.000 0.00 0.00 0.00 5.19
269 270 0.389757 GACCTTAGATCGGAGTGGGC 59.610 60.000 0.00 0.00 0.00 5.36
270 271 1.041437 GGACCTTAGATCGGAGTGGG 58.959 60.000 0.00 0.00 0.00 4.61
271 272 2.074729 AGGACCTTAGATCGGAGTGG 57.925 55.000 0.00 0.00 0.00 4.00
272 273 4.216687 GTGATAGGACCTTAGATCGGAGTG 59.783 50.000 0.00 0.00 0.00 3.51
273 274 4.105057 AGTGATAGGACCTTAGATCGGAGT 59.895 45.833 0.00 0.00 0.00 3.85
274 275 4.658063 AGTGATAGGACCTTAGATCGGAG 58.342 47.826 0.00 0.00 0.00 4.63
275 276 4.506979 GGAGTGATAGGACCTTAGATCGGA 60.507 50.000 0.00 0.00 0.00 4.55
276 277 3.759618 GGAGTGATAGGACCTTAGATCGG 59.240 52.174 0.00 0.00 0.00 4.18
277 278 4.399219 TGGAGTGATAGGACCTTAGATCG 58.601 47.826 0.00 0.00 0.00 3.69
278 279 4.219725 GCTGGAGTGATAGGACCTTAGATC 59.780 50.000 0.00 0.00 0.00 2.75
279 280 4.156477 GCTGGAGTGATAGGACCTTAGAT 58.844 47.826 0.00 0.00 0.00 1.98
280 281 3.567397 GCTGGAGTGATAGGACCTTAGA 58.433 50.000 0.00 0.00 0.00 2.10
281 282 2.630580 GGCTGGAGTGATAGGACCTTAG 59.369 54.545 0.00 0.00 0.00 2.18
282 283 2.023404 TGGCTGGAGTGATAGGACCTTA 60.023 50.000 0.00 0.00 0.00 2.69
283 284 1.273838 TGGCTGGAGTGATAGGACCTT 60.274 52.381 0.00 0.00 0.00 3.50
284 285 0.339859 TGGCTGGAGTGATAGGACCT 59.660 55.000 0.00 0.00 0.00 3.85
285 286 1.071385 CATGGCTGGAGTGATAGGACC 59.929 57.143 0.00 0.00 0.00 4.46
286 287 1.071385 CCATGGCTGGAGTGATAGGAC 59.929 57.143 0.00 0.00 46.37 3.85
287 288 1.427809 CCATGGCTGGAGTGATAGGA 58.572 55.000 0.00 0.00 46.37 2.94
288 289 0.250640 GCCATGGCTGGAGTGATAGG 60.251 60.000 29.98 0.00 46.37 2.57
289 290 0.250640 GGCCATGGCTGGAGTGATAG 60.251 60.000 34.70 0.00 46.37 2.08
290 291 0.695462 AGGCCATGGCTGGAGTGATA 60.695 55.000 34.70 0.00 46.37 2.15
291 292 1.992519 GAGGCCATGGCTGGAGTGAT 61.993 60.000 34.70 11.61 46.37 3.06
292 293 2.611800 AGGCCATGGCTGGAGTGA 60.612 61.111 34.70 0.00 46.37 3.41
293 294 2.124403 GAGGCCATGGCTGGAGTG 60.124 66.667 34.70 0.00 46.37 3.51
312 313 4.237724 GCGATCATGAGGAATAATCGTGA 58.762 43.478 12.63 0.73 44.51 4.35
351 352 5.717078 AATGCAGCTTTCTTTGAAGATGA 57.283 34.783 7.02 0.00 43.75 2.92
383 384 0.744414 CAGCACCCGGGTCATACAAG 60.744 60.000 27.51 12.42 0.00 3.16
509 510 1.447140 GCAGATCGGTGCCACGTAA 60.447 57.895 0.00 0.00 37.49 3.18
528 529 2.262423 AACCAGTGAGCCAGAGAAAC 57.738 50.000 0.00 0.00 0.00 2.78
551 552 1.586154 CGCTTTGGAACATCCCGCTT 61.586 55.000 0.00 0.00 39.30 4.68
673 684 5.177725 CACTGTGTGTGTACTGTGTAGTA 57.822 43.478 0.00 0.00 42.21 1.82
674 685 4.041740 CACTGTGTGTGTACTGTGTAGT 57.958 45.455 0.00 0.00 42.21 2.73
699 710 3.916392 CTCCGTGTCCGTGTCTGCC 62.916 68.421 0.00 0.00 0.00 4.85
701 712 2.258591 CCTCCGTGTCCGTGTCTG 59.741 66.667 0.00 0.00 0.00 3.51
702 713 3.681835 GCCTCCGTGTCCGTGTCT 61.682 66.667 0.00 0.00 0.00 3.41
708 721 4.477975 CTCGTCGCCTCCGTGTCC 62.478 72.222 0.00 0.00 35.54 4.02
722 735 4.200283 GAGAGCCTCGTGCCCTCG 62.200 72.222 0.00 0.00 42.71 4.63
889 903 2.695970 CGGAGGAGGAGGAGGGAGT 61.696 68.421 0.00 0.00 0.00 3.85
890 904 2.197324 CGGAGGAGGAGGAGGGAG 59.803 72.222 0.00 0.00 0.00 4.30
891 905 4.144727 GCGGAGGAGGAGGAGGGA 62.145 72.222 0.00 0.00 0.00 4.20
892 906 4.150454 AGCGGAGGAGGAGGAGGG 62.150 72.222 0.00 0.00 0.00 4.30
893 907 2.520741 GAGCGGAGGAGGAGGAGG 60.521 72.222 0.00 0.00 0.00 4.30
894 908 2.520741 GGAGCGGAGGAGGAGGAG 60.521 72.222 0.00 0.00 0.00 3.69
895 909 3.024356 AGGAGCGGAGGAGGAGGA 61.024 66.667 0.00 0.00 0.00 3.71
896 910 2.520741 GAGGAGCGGAGGAGGAGG 60.521 72.222 0.00 0.00 0.00 4.30
963 977 0.035056 AGGTTCAGGGAATTGCGAGG 60.035 55.000 0.00 0.00 0.00 4.63
1152 1166 4.329545 GGCTTCTCCGTGGCCACA 62.330 66.667 34.16 16.11 44.69 4.17
1345 1359 5.878406 AGATACCACTAGCAGTAGCAAAT 57.122 39.130 9.80 0.00 45.49 2.32
1347 1361 4.466370 ACAAGATACCACTAGCAGTAGCAA 59.534 41.667 9.80 0.00 45.49 3.91
1447 1461 5.394553 GCTAATTGGGGGAAAGAATCACTTG 60.395 44.000 0.00 0.00 38.98 3.16
1591 1605 6.308766 CAGATTAATTTTTGCTACTGTGGTGC 59.691 38.462 0.00 0.00 0.00 5.01
1675 1734 6.808321 TCTGCCTTTGGACACTATAATAGT 57.192 37.500 0.00 0.00 40.28 2.12
1676 1735 8.506168 TTTTCTGCCTTTGGACACTATAATAG 57.494 34.615 0.00 0.00 0.00 1.73
1678 1737 7.961326 ATTTTCTGCCTTTGGACACTATAAT 57.039 32.000 0.00 0.00 0.00 1.28
1679 1738 7.885922 TGTATTTTCTGCCTTTGGACACTATAA 59.114 33.333 0.00 0.00 0.00 0.98
1680 1739 7.398829 TGTATTTTCTGCCTTTGGACACTATA 58.601 34.615 0.00 0.00 0.00 1.31
1681 1740 6.245408 TGTATTTTCTGCCTTTGGACACTAT 58.755 36.000 0.00 0.00 0.00 2.12
1682 1741 5.626142 TGTATTTTCTGCCTTTGGACACTA 58.374 37.500 0.00 0.00 0.00 2.74
1683 1742 4.469657 TGTATTTTCTGCCTTTGGACACT 58.530 39.130 0.00 0.00 0.00 3.55
1684 1743 4.846779 TGTATTTTCTGCCTTTGGACAC 57.153 40.909 0.00 0.00 0.00 3.67
1685 1744 5.652014 CCTATGTATTTTCTGCCTTTGGACA 59.348 40.000 0.00 0.00 0.00 4.02
1686 1745 5.885912 TCCTATGTATTTTCTGCCTTTGGAC 59.114 40.000 0.00 0.00 0.00 4.02
1687 1746 6.073447 TCCTATGTATTTTCTGCCTTTGGA 57.927 37.500 0.00 0.00 0.00 3.53
1688 1747 5.221126 GCTCCTATGTATTTTCTGCCTTTGG 60.221 44.000 0.00 0.00 0.00 3.28
1689 1748 5.591877 AGCTCCTATGTATTTTCTGCCTTTG 59.408 40.000 0.00 0.00 0.00 2.77
1690 1749 5.760131 AGCTCCTATGTATTTTCTGCCTTT 58.240 37.500 0.00 0.00 0.00 3.11
1691 1750 5.372373 GAGCTCCTATGTATTTTCTGCCTT 58.628 41.667 0.87 0.00 0.00 4.35
1692 1751 4.202409 GGAGCTCCTATGTATTTTCTGCCT 60.202 45.833 26.25 0.00 0.00 4.75
1693 1752 4.068599 GGAGCTCCTATGTATTTTCTGCC 58.931 47.826 26.25 0.00 0.00 4.85
1694 1753 4.754114 CAGGAGCTCCTATGTATTTTCTGC 59.246 45.833 34.67 0.85 46.65 4.26
1695 1754 5.303971 CCAGGAGCTCCTATGTATTTTCTG 58.696 45.833 34.67 17.87 46.65 3.02
1722 1781 9.667107 CGTTTAATATTCATATAGGGTGTGGAT 57.333 33.333 0.00 0.00 0.00 3.41
1807 1869 6.824305 AAATTTCACACAGGAGTAGATTGG 57.176 37.500 0.00 0.00 0.00 3.16
1852 1914 2.930826 ATTTCCTTCGCCACGGATAT 57.069 45.000 0.00 0.00 0.00 1.63
1875 1937 5.011533 TGTTTGGATGGATTTTTGTTCGGAT 59.988 36.000 0.00 0.00 0.00 4.18
1934 1996 1.396996 CCAGGAAAACTATTCGTGGCG 59.603 52.381 14.65 0.00 44.26 5.69
1977 2039 1.657794 GTTCGCGATCTACTCCCGC 60.658 63.158 10.88 0.00 44.81 6.13
1991 2053 3.616219 TGGGATATCAAACTTGGGTTCG 58.384 45.455 4.83 0.00 34.14 3.95
2356 2517 6.046593 TGATATACTTAGTGAAAGGGCGTTG 58.953 40.000 0.00 0.00 39.73 4.10
2425 2587 6.125327 TGAAACATGTACACAATGACGTTT 57.875 33.333 0.00 0.00 0.00 3.60
2785 3078 1.605968 GCATGGTGCTGCATTTCACAA 60.606 47.619 5.27 5.20 40.96 3.33
3165 3469 1.544759 CGGCCCCTTCCACAATATACC 60.545 57.143 0.00 0.00 0.00 2.73
3237 3541 5.044030 TCCTCCAACCTCATACTCTAGAAGT 60.044 44.000 0.00 0.00 42.33 3.01
3330 3634 5.414454 TGAAATAAACCACGAATCAGAAGGG 59.586 40.000 0.00 0.00 0.00 3.95
3403 3709 1.748493 TGAACTGGTGCAGAAACAACC 59.252 47.619 0.00 0.00 35.18 3.77
3411 3717 4.935702 TCTGAAAAATTGAACTGGTGCAG 58.064 39.130 0.00 0.00 37.52 4.41
3621 3927 2.036556 GTGTCCATTGCAGAAACACG 57.963 50.000 7.63 0.00 31.90 4.49
4040 4346 6.837312 TGACCACCGAATATCCTATGAATTT 58.163 36.000 0.00 0.00 0.00 1.82
4041 4347 6.270000 TCTGACCACCGAATATCCTATGAATT 59.730 38.462 0.00 0.00 0.00 2.17
4042 4348 5.780282 TCTGACCACCGAATATCCTATGAAT 59.220 40.000 0.00 0.00 0.00 2.57
4502 4808 5.424121 GCATCCTTGCGTATTGTATTCTT 57.576 39.130 0.00 0.00 39.49 2.52
4580 4887 5.357742 TCAGGAGATCGATCCATCAAAAA 57.642 39.130 21.66 0.00 42.26 1.94
4599 4906 0.742281 CCTCGCCACATCCTGTTCAG 60.742 60.000 0.00 0.00 0.00 3.02
4975 5289 2.192861 CACGCTCCCACTTTTGGCA 61.193 57.895 0.00 0.00 42.35 4.92
5007 5321 3.134804 GGTACCAGATTAGACCAGCACAT 59.865 47.826 7.15 0.00 31.89 3.21
5008 5322 2.500098 GGTACCAGATTAGACCAGCACA 59.500 50.000 7.15 0.00 31.89 4.57
5035 5349 1.476291 CCGTTAAATGACCTAGGGGGC 60.476 57.143 14.81 2.51 42.24 5.80
5328 5643 4.444838 TCCCGGTCGATGGCAACG 62.445 66.667 11.21 11.21 42.51 4.10
5523 5842 2.024414 GTTGCACTAGCTTTATGGGGG 58.976 52.381 0.00 0.00 42.74 5.40
5524 5843 2.722094 TGTTGCACTAGCTTTATGGGG 58.278 47.619 0.00 0.00 42.74 4.96
5546 5865 0.455464 CGACAACACCATCGCTACGA 60.455 55.000 0.00 0.00 41.13 3.43
5559 5878 1.154413 CCATCTGCGCAACGACAAC 60.154 57.895 13.05 0.00 0.00 3.32
5560 5879 0.673333 ATCCATCTGCGCAACGACAA 60.673 50.000 13.05 0.00 0.00 3.18
5561 5880 0.673333 AATCCATCTGCGCAACGACA 60.673 50.000 13.05 0.00 0.00 4.35
5562 5881 0.447801 AAATCCATCTGCGCAACGAC 59.552 50.000 13.05 0.00 0.00 4.34
5563 5882 0.447406 CAAATCCATCTGCGCAACGA 59.553 50.000 13.05 6.69 0.00 3.85
5564 5883 1.135699 GCAAATCCATCTGCGCAACG 61.136 55.000 13.05 0.00 0.00 4.10
5749 6077 3.411351 CACCTGCCACGTACGCAC 61.411 66.667 16.72 5.45 31.61 5.34
5752 6080 2.663520 TTGCACCTGCCACGTACG 60.664 61.111 15.01 15.01 41.18 3.67
5753 6081 0.882927 TTCTTGCACCTGCCACGTAC 60.883 55.000 0.00 0.00 41.18 3.67
5754 6082 1.448069 TTCTTGCACCTGCCACGTA 59.552 52.632 0.00 0.00 41.18 3.57
5755 6083 2.191908 TTCTTGCACCTGCCACGT 59.808 55.556 0.00 0.00 41.18 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.