Multiple sequence alignment - TraesCS3B01G238900
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G238900 | chr3B | 100.000 | 2899 | 0 | 0 | 1 | 2899 | 376501876 | 376504774 | 0.000000e+00 | 5354 |
1 | TraesCS3B01G238900 | chr3B | 90.591 | 1371 | 123 | 6 | 149 | 1514 | 40495001 | 40496370 | 0.000000e+00 | 1812 |
2 | TraesCS3B01G238900 | chr3B | 90.057 | 1408 | 127 | 11 | 149 | 1547 | 115675888 | 115674485 | 0.000000e+00 | 1812 |
3 | TraesCS3B01G238900 | chr3B | 86.961 | 951 | 86 | 26 | 1954 | 2899 | 453570074 | 453569157 | 0.000000e+00 | 1035 |
4 | TraesCS3B01G238900 | chr4B | 92.725 | 1402 | 86 | 5 | 149 | 1547 | 155757504 | 155758892 | 0.000000e+00 | 2010 |
5 | TraesCS3B01G238900 | chr4B | 89.668 | 1297 | 99 | 17 | 1606 | 2899 | 155758895 | 155760159 | 0.000000e+00 | 1620 |
6 | TraesCS3B01G238900 | chr4B | 88.812 | 1305 | 117 | 18 | 1606 | 2899 | 595412282 | 595413568 | 0.000000e+00 | 1574 |
7 | TraesCS3B01G238900 | chr4B | 85.953 | 1196 | 130 | 28 | 1722 | 2899 | 451474946 | 451476121 | 0.000000e+00 | 1243 |
8 | TraesCS3B01G238900 | chr4B | 87.020 | 1094 | 115 | 19 | 1812 | 2899 | 503289835 | 503288763 | 0.000000e+00 | 1208 |
9 | TraesCS3B01G238900 | chrUn | 91.026 | 1404 | 119 | 7 | 149 | 1547 | 79020275 | 79018874 | 0.000000e+00 | 1888 |
10 | TraesCS3B01G238900 | chrUn | 89.530 | 1404 | 141 | 6 | 149 | 1547 | 41660889 | 41662291 | 0.000000e+00 | 1773 |
11 | TraesCS3B01G238900 | chrUn | 98.333 | 60 | 1 | 0 | 1546 | 1605 | 246699231 | 246699172 | 3.950000e-19 | 106 |
12 | TraesCS3B01G238900 | chr1B | 90.754 | 1406 | 123 | 7 | 146 | 1547 | 149476467 | 149475065 | 0.000000e+00 | 1869 |
13 | TraesCS3B01G238900 | chr1B | 90.979 | 1308 | 92 | 16 | 1606 | 2899 | 566776560 | 566775265 | 0.000000e+00 | 1738 |
14 | TraesCS3B01G238900 | chr1B | 86.055 | 1298 | 130 | 34 | 1610 | 2899 | 346596052 | 346597306 | 0.000000e+00 | 1347 |
15 | TraesCS3B01G238900 | chr1B | 98.333 | 60 | 1 | 0 | 1546 | 1605 | 49787160 | 49787101 | 3.950000e-19 | 106 |
16 | TraesCS3B01G238900 | chr1B | 98.333 | 60 | 1 | 0 | 1546 | 1605 | 49815595 | 49815654 | 3.950000e-19 | 106 |
17 | TraesCS3B01G238900 | chr6B | 91.088 | 1369 | 113 | 8 | 149 | 1514 | 105723281 | 105724643 | 0.000000e+00 | 1844 |
18 | TraesCS3B01G238900 | chr6B | 88.276 | 1305 | 127 | 19 | 1610 | 2899 | 440009122 | 440010415 | 0.000000e+00 | 1539 |
19 | TraesCS3B01G238900 | chr6B | 89.016 | 1220 | 117 | 10 | 1687 | 2899 | 272297144 | 272295935 | 0.000000e+00 | 1495 |
20 | TraesCS3B01G238900 | chr2B | 89.372 | 1402 | 139 | 7 | 149 | 1547 | 298275750 | 298277144 | 0.000000e+00 | 1755 |
21 | TraesCS3B01G238900 | chr7B | 88.730 | 1402 | 151 | 5 | 149 | 1547 | 476088097 | 476086700 | 0.000000e+00 | 1707 |
22 | TraesCS3B01G238900 | chr7D | 88.659 | 1305 | 111 | 24 | 1609 | 2899 | 281329506 | 281328225 | 0.000000e+00 | 1555 |
23 | TraesCS3B01G238900 | chr7D | 96.000 | 150 | 5 | 1 | 1 | 150 | 592113251 | 592113103 | 2.890000e-60 | 243 |
24 | TraesCS3B01G238900 | chr7D | 95.395 | 152 | 6 | 1 | 1 | 152 | 428043839 | 428043689 | 1.040000e-59 | 241 |
25 | TraesCS3B01G238900 | chr4D | 90.008 | 1181 | 77 | 23 | 1606 | 2776 | 358036848 | 358035699 | 0.000000e+00 | 1489 |
26 | TraesCS3B01G238900 | chr4D | 96.053 | 152 | 4 | 2 | 1 | 151 | 95809708 | 95809858 | 2.230000e-61 | 246 |
27 | TraesCS3B01G238900 | chr4D | 98.333 | 60 | 1 | 0 | 1546 | 1605 | 241247367 | 241247426 | 3.950000e-19 | 106 |
28 | TraesCS3B01G238900 | chr2D | 87.203 | 1305 | 113 | 28 | 1606 | 2898 | 181665687 | 181664425 | 0.000000e+00 | 1435 |
29 | TraesCS3B01G238900 | chr2D | 86.687 | 1307 | 112 | 36 | 1606 | 2899 | 209708144 | 209706887 | 0.000000e+00 | 1393 |
30 | TraesCS3B01G238900 | chr5B | 90.995 | 955 | 65 | 16 | 1954 | 2899 | 586882725 | 586883667 | 0.000000e+00 | 1267 |
31 | TraesCS3B01G238900 | chr5B | 98.333 | 60 | 1 | 0 | 1546 | 1605 | 695875928 | 695875869 | 3.950000e-19 | 106 |
32 | TraesCS3B01G238900 | chr6A | 84.158 | 1193 | 139 | 34 | 1722 | 2899 | 509870083 | 509871240 | 0.000000e+00 | 1110 |
33 | TraesCS3B01G238900 | chr6A | 97.241 | 145 | 4 | 0 | 1 | 145 | 473643007 | 473642863 | 2.230000e-61 | 246 |
34 | TraesCS3B01G238900 | chr4A | 83.863 | 1196 | 159 | 25 | 1721 | 2899 | 113199403 | 113200581 | 0.000000e+00 | 1109 |
35 | TraesCS3B01G238900 | chr1D | 83.183 | 1219 | 152 | 34 | 1712 | 2899 | 288163524 | 288164720 | 0.000000e+00 | 1066 |
36 | TraesCS3B01G238900 | chr1D | 95.513 | 156 | 5 | 1 | 1 | 154 | 350277711 | 350277556 | 6.200000e-62 | 248 |
37 | TraesCS3B01G238900 | chr7A | 80.171 | 1286 | 181 | 44 | 1650 | 2898 | 404878703 | 404877455 | 0.000000e+00 | 894 |
38 | TraesCS3B01G238900 | chr7A | 93.373 | 166 | 7 | 4 | 1 | 164 | 78315945 | 78316108 | 2.890000e-60 | 243 |
39 | TraesCS3B01G238900 | chr3D | 97.241 | 145 | 4 | 0 | 1 | 145 | 431705657 | 431705801 | 2.230000e-61 | 246 |
40 | TraesCS3B01G238900 | chr3D | 95.425 | 153 | 7 | 0 | 1 | 153 | 576231508 | 576231356 | 8.020000e-61 | 244 |
41 | TraesCS3B01G238900 | chr3D | 98.333 | 60 | 1 | 0 | 1546 | 1605 | 202626457 | 202626398 | 3.950000e-19 | 106 |
42 | TraesCS3B01G238900 | chr3D | 98.333 | 60 | 1 | 0 | 1546 | 1605 | 498442838 | 498442897 | 3.950000e-19 | 106 |
43 | TraesCS3B01G238900 | chr5D | 96.026 | 151 | 5 | 1 | 1 | 150 | 492714694 | 492714844 | 8.020000e-61 | 244 |
44 | TraesCS3B01G238900 | chr6D | 98.333 | 60 | 1 | 0 | 1546 | 1605 | 370008462 | 370008403 | 3.950000e-19 | 106 |
45 | TraesCS3B01G238900 | chr6D | 98.333 | 60 | 1 | 0 | 1546 | 1605 | 430467750 | 430467691 | 3.950000e-19 | 106 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G238900 | chr3B | 376501876 | 376504774 | 2898 | False | 5354 | 5354 | 100.0000 | 1 | 2899 | 1 | chr3B.!!$F2 | 2898 |
1 | TraesCS3B01G238900 | chr3B | 40495001 | 40496370 | 1369 | False | 1812 | 1812 | 90.5910 | 149 | 1514 | 1 | chr3B.!!$F1 | 1365 |
2 | TraesCS3B01G238900 | chr3B | 115674485 | 115675888 | 1403 | True | 1812 | 1812 | 90.0570 | 149 | 1547 | 1 | chr3B.!!$R1 | 1398 |
3 | TraesCS3B01G238900 | chr3B | 453569157 | 453570074 | 917 | True | 1035 | 1035 | 86.9610 | 1954 | 2899 | 1 | chr3B.!!$R2 | 945 |
4 | TraesCS3B01G238900 | chr4B | 155757504 | 155760159 | 2655 | False | 1815 | 2010 | 91.1965 | 149 | 2899 | 2 | chr4B.!!$F3 | 2750 |
5 | TraesCS3B01G238900 | chr4B | 595412282 | 595413568 | 1286 | False | 1574 | 1574 | 88.8120 | 1606 | 2899 | 1 | chr4B.!!$F2 | 1293 |
6 | TraesCS3B01G238900 | chr4B | 451474946 | 451476121 | 1175 | False | 1243 | 1243 | 85.9530 | 1722 | 2899 | 1 | chr4B.!!$F1 | 1177 |
7 | TraesCS3B01G238900 | chr4B | 503288763 | 503289835 | 1072 | True | 1208 | 1208 | 87.0200 | 1812 | 2899 | 1 | chr4B.!!$R1 | 1087 |
8 | TraesCS3B01G238900 | chrUn | 79018874 | 79020275 | 1401 | True | 1888 | 1888 | 91.0260 | 149 | 1547 | 1 | chrUn.!!$R1 | 1398 |
9 | TraesCS3B01G238900 | chrUn | 41660889 | 41662291 | 1402 | False | 1773 | 1773 | 89.5300 | 149 | 1547 | 1 | chrUn.!!$F1 | 1398 |
10 | TraesCS3B01G238900 | chr1B | 149475065 | 149476467 | 1402 | True | 1869 | 1869 | 90.7540 | 146 | 1547 | 1 | chr1B.!!$R2 | 1401 |
11 | TraesCS3B01G238900 | chr1B | 566775265 | 566776560 | 1295 | True | 1738 | 1738 | 90.9790 | 1606 | 2899 | 1 | chr1B.!!$R3 | 1293 |
12 | TraesCS3B01G238900 | chr1B | 346596052 | 346597306 | 1254 | False | 1347 | 1347 | 86.0550 | 1610 | 2899 | 1 | chr1B.!!$F2 | 1289 |
13 | TraesCS3B01G238900 | chr6B | 105723281 | 105724643 | 1362 | False | 1844 | 1844 | 91.0880 | 149 | 1514 | 1 | chr6B.!!$F1 | 1365 |
14 | TraesCS3B01G238900 | chr6B | 440009122 | 440010415 | 1293 | False | 1539 | 1539 | 88.2760 | 1610 | 2899 | 1 | chr6B.!!$F2 | 1289 |
15 | TraesCS3B01G238900 | chr6B | 272295935 | 272297144 | 1209 | True | 1495 | 1495 | 89.0160 | 1687 | 2899 | 1 | chr6B.!!$R1 | 1212 |
16 | TraesCS3B01G238900 | chr2B | 298275750 | 298277144 | 1394 | False | 1755 | 1755 | 89.3720 | 149 | 1547 | 1 | chr2B.!!$F1 | 1398 |
17 | TraesCS3B01G238900 | chr7B | 476086700 | 476088097 | 1397 | True | 1707 | 1707 | 88.7300 | 149 | 1547 | 1 | chr7B.!!$R1 | 1398 |
18 | TraesCS3B01G238900 | chr7D | 281328225 | 281329506 | 1281 | True | 1555 | 1555 | 88.6590 | 1609 | 2899 | 1 | chr7D.!!$R1 | 1290 |
19 | TraesCS3B01G238900 | chr4D | 358035699 | 358036848 | 1149 | True | 1489 | 1489 | 90.0080 | 1606 | 2776 | 1 | chr4D.!!$R1 | 1170 |
20 | TraesCS3B01G238900 | chr2D | 181664425 | 181665687 | 1262 | True | 1435 | 1435 | 87.2030 | 1606 | 2898 | 1 | chr2D.!!$R1 | 1292 |
21 | TraesCS3B01G238900 | chr2D | 209706887 | 209708144 | 1257 | True | 1393 | 1393 | 86.6870 | 1606 | 2899 | 1 | chr2D.!!$R2 | 1293 |
22 | TraesCS3B01G238900 | chr5B | 586882725 | 586883667 | 942 | False | 1267 | 1267 | 90.9950 | 1954 | 2899 | 1 | chr5B.!!$F1 | 945 |
23 | TraesCS3B01G238900 | chr6A | 509870083 | 509871240 | 1157 | False | 1110 | 1110 | 84.1580 | 1722 | 2899 | 1 | chr6A.!!$F1 | 1177 |
24 | TraesCS3B01G238900 | chr4A | 113199403 | 113200581 | 1178 | False | 1109 | 1109 | 83.8630 | 1721 | 2899 | 1 | chr4A.!!$F1 | 1178 |
25 | TraesCS3B01G238900 | chr1D | 288163524 | 288164720 | 1196 | False | 1066 | 1066 | 83.1830 | 1712 | 2899 | 1 | chr1D.!!$F1 | 1187 |
26 | TraesCS3B01G238900 | chr7A | 404877455 | 404878703 | 1248 | True | 894 | 894 | 80.1710 | 1650 | 2898 | 1 | chr7A.!!$R1 | 1248 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
40 | 41 | 0.179222 | GTGCTAACGCTTCCGCTTTC | 60.179 | 55.0 | 0.00 | 0.0 | 38.22 | 2.62 | F |
73 | 74 | 0.404812 | ACGTAGACACACTCTCCCCT | 59.595 | 55.0 | 0.00 | 0.0 | 0.00 | 4.79 | F |
109 | 110 | 0.736636 | ACCATGATCTTGCATGTGCG | 59.263 | 50.0 | 3.07 | 0.0 | 43.16 | 5.34 | F |
545 | 553 | 0.753111 | GGATTCCAAGGCCATTCGCT | 60.753 | 55.0 | 5.01 | 0.0 | 37.74 | 4.93 | F |
898 | 906 | 0.885879 | ATGTCATGTGCAAGTGCCTG | 59.114 | 50.0 | 0.00 | 0.0 | 41.18 | 4.85 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1489 | 1498 | 0.609131 | ATGCCACTAACAGGGTGTGC | 60.609 | 55.000 | 0.0 | 0.0 | 34.18 | 4.57 | R |
1583 | 1592 | 0.620556 | AGCCATTCTCACAACGGGAT | 59.379 | 50.000 | 0.0 | 0.0 | 0.00 | 3.85 | R |
1584 | 1593 | 1.207089 | CTAGCCATTCTCACAACGGGA | 59.793 | 52.381 | 0.0 | 0.0 | 0.00 | 5.14 | R |
1586 | 1595 | 2.093973 | ACTCTAGCCATTCTCACAACGG | 60.094 | 50.000 | 0.0 | 0.0 | 0.00 | 4.44 | R |
2516 | 2589 | 2.487934 | CGATCCAGGGAACATGACATC | 58.512 | 52.381 | 0.0 | 0.0 | 0.00 | 3.06 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
20 | 21 | 2.273370 | ACGACTACATCAATCGCGTT | 57.727 | 45.000 | 5.77 | 0.00 | 39.47 | 4.84 |
21 | 22 | 1.917955 | ACGACTACATCAATCGCGTTG | 59.082 | 47.619 | 5.77 | 10.48 | 39.47 | 4.10 |
22 | 23 | 1.917955 | CGACTACATCAATCGCGTTGT | 59.082 | 47.619 | 5.77 | 6.34 | 38.95 | 3.32 |
23 | 24 | 2.284457 | CGACTACATCAATCGCGTTGTG | 60.284 | 50.000 | 5.77 | 12.50 | 38.95 | 3.33 |
24 | 25 | 1.393539 | ACTACATCAATCGCGTTGTGC | 59.606 | 47.619 | 5.77 | 0.00 | 38.95 | 4.57 |
25 | 26 | 1.660607 | CTACATCAATCGCGTTGTGCT | 59.339 | 47.619 | 5.77 | 0.00 | 43.27 | 4.40 |
26 | 27 | 1.720805 | ACATCAATCGCGTTGTGCTA | 58.279 | 45.000 | 5.77 | 0.00 | 43.27 | 3.49 |
27 | 28 | 2.073056 | ACATCAATCGCGTTGTGCTAA | 58.927 | 42.857 | 5.77 | 0.00 | 43.27 | 3.09 |
28 | 29 | 2.159707 | ACATCAATCGCGTTGTGCTAAC | 60.160 | 45.455 | 5.77 | 0.00 | 43.27 | 2.34 |
29 | 30 | 0.436913 | TCAATCGCGTTGTGCTAACG | 59.563 | 50.000 | 18.25 | 18.25 | 45.56 | 3.18 |
35 | 36 | 1.129809 | CGTTGTGCTAACGCTTCCG | 59.870 | 57.895 | 12.46 | 0.00 | 36.82 | 4.30 |
36 | 37 | 1.154469 | GTTGTGCTAACGCTTCCGC | 60.154 | 57.895 | 0.00 | 0.00 | 38.22 | 5.54 |
37 | 38 | 1.301401 | TTGTGCTAACGCTTCCGCT | 60.301 | 52.632 | 0.00 | 0.00 | 38.22 | 5.52 |
38 | 39 | 0.882927 | TTGTGCTAACGCTTCCGCTT | 60.883 | 50.000 | 0.00 | 0.00 | 38.22 | 4.68 |
39 | 40 | 0.882927 | TGTGCTAACGCTTCCGCTTT | 60.883 | 50.000 | 0.00 | 0.00 | 38.22 | 3.51 |
40 | 41 | 0.179222 | GTGCTAACGCTTCCGCTTTC | 60.179 | 55.000 | 0.00 | 0.00 | 38.22 | 2.62 |
41 | 42 | 1.058903 | GCTAACGCTTCCGCTTTCG | 59.941 | 57.895 | 0.00 | 0.00 | 38.22 | 3.46 |
64 | 65 | 2.760634 | TACGAGGGTACGTAGACACA | 57.239 | 50.000 | 0.00 | 0.00 | 44.72 | 3.72 |
65 | 66 | 1.160137 | ACGAGGGTACGTAGACACAC | 58.840 | 55.000 | 0.00 | 0.00 | 44.72 | 3.82 |
66 | 67 | 1.271054 | ACGAGGGTACGTAGACACACT | 60.271 | 52.381 | 0.00 | 0.00 | 44.72 | 3.55 |
67 | 68 | 1.396301 | CGAGGGTACGTAGACACACTC | 59.604 | 57.143 | 8.17 | 8.17 | 40.93 | 3.51 |
68 | 69 | 2.709213 | GAGGGTACGTAGACACACTCT | 58.291 | 52.381 | 10.55 | 0.00 | 41.06 | 3.24 |
69 | 70 | 2.677337 | GAGGGTACGTAGACACACTCTC | 59.323 | 54.545 | 10.55 | 4.79 | 41.06 | 3.20 |
70 | 71 | 1.742268 | GGGTACGTAGACACACTCTCC | 59.258 | 57.143 | 0.00 | 0.00 | 0.00 | 3.71 |
71 | 72 | 1.742268 | GGTACGTAGACACACTCTCCC | 59.258 | 57.143 | 0.00 | 0.00 | 0.00 | 4.30 |
72 | 73 | 1.742268 | GTACGTAGACACACTCTCCCC | 59.258 | 57.143 | 0.00 | 0.00 | 0.00 | 4.81 |
73 | 74 | 0.404812 | ACGTAGACACACTCTCCCCT | 59.595 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
74 | 75 | 1.096416 | CGTAGACACACTCTCCCCTC | 58.904 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
75 | 76 | 1.340211 | CGTAGACACACTCTCCCCTCT | 60.340 | 57.143 | 0.00 | 0.00 | 0.00 | 3.69 |
76 | 77 | 2.371306 | GTAGACACACTCTCCCCTCTC | 58.629 | 57.143 | 0.00 | 0.00 | 0.00 | 3.20 |
77 | 78 | 0.780637 | AGACACACTCTCCCCTCTCA | 59.219 | 55.000 | 0.00 | 0.00 | 0.00 | 3.27 |
78 | 79 | 1.360852 | AGACACACTCTCCCCTCTCAT | 59.639 | 52.381 | 0.00 | 0.00 | 0.00 | 2.90 |
79 | 80 | 2.183679 | GACACACTCTCCCCTCTCATT | 58.816 | 52.381 | 0.00 | 0.00 | 0.00 | 2.57 |
80 | 81 | 1.905215 | ACACACTCTCCCCTCTCATTG | 59.095 | 52.381 | 0.00 | 0.00 | 0.00 | 2.82 |
81 | 82 | 0.908198 | ACACTCTCCCCTCTCATTGC | 59.092 | 55.000 | 0.00 | 0.00 | 0.00 | 3.56 |
82 | 83 | 1.202330 | CACTCTCCCCTCTCATTGCT | 58.798 | 55.000 | 0.00 | 0.00 | 0.00 | 3.91 |
83 | 84 | 2.292521 | ACACTCTCCCCTCTCATTGCTA | 60.293 | 50.000 | 0.00 | 0.00 | 0.00 | 3.49 |
84 | 85 | 2.971330 | CACTCTCCCCTCTCATTGCTAT | 59.029 | 50.000 | 0.00 | 0.00 | 0.00 | 2.97 |
85 | 86 | 2.971330 | ACTCTCCCCTCTCATTGCTATG | 59.029 | 50.000 | 1.30 | 1.30 | 0.00 | 2.23 |
86 | 87 | 1.696336 | TCTCCCCTCTCATTGCTATGC | 59.304 | 52.381 | 3.00 | 0.00 | 0.00 | 3.14 |
87 | 88 | 1.419012 | CTCCCCTCTCATTGCTATGCA | 59.581 | 52.381 | 3.00 | 0.00 | 36.47 | 3.96 |
88 | 89 | 2.040012 | CTCCCCTCTCATTGCTATGCAT | 59.960 | 50.000 | 3.79 | 3.79 | 38.76 | 3.96 |
89 | 90 | 2.039480 | TCCCCTCTCATTGCTATGCATC | 59.961 | 50.000 | 0.19 | 0.00 | 38.76 | 3.91 |
90 | 91 | 2.224695 | CCCCTCTCATTGCTATGCATCA | 60.225 | 50.000 | 0.19 | 0.00 | 38.76 | 3.07 |
91 | 92 | 2.812591 | CCCTCTCATTGCTATGCATCAC | 59.187 | 50.000 | 0.19 | 0.00 | 38.76 | 3.06 |
92 | 93 | 2.812591 | CCTCTCATTGCTATGCATCACC | 59.187 | 50.000 | 0.19 | 0.00 | 38.76 | 4.02 |
93 | 94 | 3.473625 | CTCTCATTGCTATGCATCACCA | 58.526 | 45.455 | 0.19 | 0.00 | 38.76 | 4.17 |
94 | 95 | 4.072839 | CTCTCATTGCTATGCATCACCAT | 58.927 | 43.478 | 0.19 | 0.00 | 38.76 | 3.55 |
95 | 96 | 3.818773 | TCTCATTGCTATGCATCACCATG | 59.181 | 43.478 | 0.19 | 4.57 | 38.76 | 3.66 |
96 | 97 | 3.818773 | CTCATTGCTATGCATCACCATGA | 59.181 | 43.478 | 0.19 | 8.77 | 38.76 | 3.07 |
97 | 98 | 4.403734 | TCATTGCTATGCATCACCATGAT | 58.596 | 39.130 | 0.19 | 0.00 | 38.76 | 2.45 |
98 | 99 | 4.457949 | TCATTGCTATGCATCACCATGATC | 59.542 | 41.667 | 0.19 | 0.00 | 38.76 | 2.92 |
99 | 100 | 3.782656 | TGCTATGCATCACCATGATCT | 57.217 | 42.857 | 0.19 | 0.00 | 34.28 | 2.75 |
100 | 101 | 4.094830 | TGCTATGCATCACCATGATCTT | 57.905 | 40.909 | 0.19 | 0.00 | 34.28 | 2.40 |
101 | 102 | 3.818773 | TGCTATGCATCACCATGATCTTG | 59.181 | 43.478 | 0.19 | 1.60 | 34.28 | 3.02 |
102 | 103 | 3.366070 | GCTATGCATCACCATGATCTTGC | 60.366 | 47.826 | 0.19 | 0.00 | 34.28 | 4.01 |
103 | 104 | 2.131776 | TGCATCACCATGATCTTGCA | 57.868 | 45.000 | 3.07 | 8.61 | 37.51 | 4.08 |
104 | 105 | 2.661718 | TGCATCACCATGATCTTGCAT | 58.338 | 42.857 | 3.07 | 0.00 | 35.67 | 3.96 |
105 | 106 | 2.360801 | TGCATCACCATGATCTTGCATG | 59.639 | 45.455 | 3.07 | 0.00 | 44.05 | 4.06 |
106 | 107 | 2.361119 | GCATCACCATGATCTTGCATGT | 59.639 | 45.455 | 3.07 | 0.00 | 43.16 | 3.21 |
107 | 108 | 3.795488 | GCATCACCATGATCTTGCATGTG | 60.795 | 47.826 | 3.07 | 6.61 | 43.16 | 3.21 |
108 | 109 | 1.746787 | TCACCATGATCTTGCATGTGC | 59.253 | 47.619 | 3.07 | 0.00 | 43.16 | 4.57 |
109 | 110 | 0.736636 | ACCATGATCTTGCATGTGCG | 59.263 | 50.000 | 3.07 | 0.00 | 43.16 | 5.34 |
110 | 111 | 0.736636 | CCATGATCTTGCATGTGCGT | 59.263 | 50.000 | 3.07 | 0.00 | 43.16 | 5.24 |
111 | 112 | 1.941975 | CCATGATCTTGCATGTGCGTA | 59.058 | 47.619 | 3.07 | 0.00 | 43.16 | 4.42 |
112 | 113 | 2.032290 | CCATGATCTTGCATGTGCGTAG | 60.032 | 50.000 | 3.07 | 1.03 | 43.16 | 3.51 |
113 | 114 | 1.655484 | TGATCTTGCATGTGCGTAGG | 58.345 | 50.000 | 0.01 | 0.00 | 45.83 | 3.18 |
114 | 115 | 1.206849 | TGATCTTGCATGTGCGTAGGA | 59.793 | 47.619 | 0.01 | 0.00 | 45.83 | 2.94 |
115 | 116 | 2.158914 | TGATCTTGCATGTGCGTAGGAT | 60.159 | 45.455 | 0.01 | 1.84 | 45.83 | 3.24 |
116 | 117 | 2.401583 | TCTTGCATGTGCGTAGGATT | 57.598 | 45.000 | 0.01 | 0.00 | 45.83 | 3.01 |
117 | 118 | 2.710377 | TCTTGCATGTGCGTAGGATTT | 58.290 | 42.857 | 0.01 | 0.00 | 45.83 | 2.17 |
118 | 119 | 3.081061 | TCTTGCATGTGCGTAGGATTTT | 58.919 | 40.909 | 0.01 | 0.00 | 45.83 | 1.82 |
119 | 120 | 3.505680 | TCTTGCATGTGCGTAGGATTTTT | 59.494 | 39.130 | 0.01 | 0.00 | 45.83 | 1.94 |
140 | 141 | 4.769859 | TTTTGCAATTACTACGTTCCCC | 57.230 | 40.909 | 0.00 | 0.00 | 0.00 | 4.81 |
141 | 142 | 3.420300 | TTGCAATTACTACGTTCCCCA | 57.580 | 42.857 | 0.00 | 0.00 | 0.00 | 4.96 |
142 | 143 | 3.420300 | TGCAATTACTACGTTCCCCAA | 57.580 | 42.857 | 0.00 | 0.00 | 0.00 | 4.12 |
143 | 144 | 3.075884 | TGCAATTACTACGTTCCCCAAC | 58.924 | 45.455 | 0.00 | 0.00 | 0.00 | 3.77 |
144 | 145 | 3.075884 | GCAATTACTACGTTCCCCAACA | 58.924 | 45.455 | 0.00 | 0.00 | 32.14 | 3.33 |
145 | 146 | 3.120095 | GCAATTACTACGTTCCCCAACAC | 60.120 | 47.826 | 0.00 | 0.00 | 32.14 | 3.32 |
146 | 147 | 4.066490 | CAATTACTACGTTCCCCAACACA | 58.934 | 43.478 | 0.00 | 0.00 | 32.14 | 3.72 |
147 | 148 | 4.563140 | ATTACTACGTTCCCCAACACAT | 57.437 | 40.909 | 0.00 | 0.00 | 32.14 | 3.21 |
198 | 200 | 3.654414 | AGCGATTGTGTTAGGCTATAGC | 58.346 | 45.455 | 16.78 | 16.78 | 41.14 | 2.97 |
224 | 228 | 8.611757 | CCTAGGTTTTTCTTGTTTTCATTTTGG | 58.388 | 33.333 | 0.00 | 0.00 | 0.00 | 3.28 |
233 | 237 | 7.327214 | TCTTGTTTTCATTTTGGGCCATATAC | 58.673 | 34.615 | 7.26 | 0.17 | 0.00 | 1.47 |
266 | 270 | 3.850173 | TCTCTAGCCATTAACCCCTGTTT | 59.150 | 43.478 | 0.00 | 0.00 | 35.87 | 2.83 |
322 | 330 | 2.158813 | GCGGGTTGGATTATCCTCTCAA | 60.159 | 50.000 | 12.91 | 0.00 | 37.46 | 3.02 |
531 | 539 | 5.827797 | TCCTACTTGCCATATTTGTGGATTC | 59.172 | 40.000 | 0.00 | 0.00 | 42.02 | 2.52 |
545 | 553 | 0.753111 | GGATTCCAAGGCCATTCGCT | 60.753 | 55.000 | 5.01 | 0.00 | 37.74 | 4.93 |
546 | 554 | 1.106285 | GATTCCAAGGCCATTCGCTT | 58.894 | 50.000 | 5.01 | 0.00 | 37.74 | 4.68 |
706 | 714 | 3.244215 | TGAGATCTCACCGTTTGCTTCTT | 60.244 | 43.478 | 21.67 | 0.00 | 34.14 | 2.52 |
779 | 787 | 7.928167 | TGCACCACAACAATTTTATTCACATTA | 59.072 | 29.630 | 0.00 | 0.00 | 0.00 | 1.90 |
827 | 835 | 6.248433 | AGATGTGTCCAATGGAGTTAAATGT | 58.752 | 36.000 | 0.27 | 0.00 | 29.39 | 2.71 |
881 | 889 | 4.880120 | ACCTGATGAGTCATTAGTGCAATG | 59.120 | 41.667 | 20.14 | 8.89 | 44.69 | 2.82 |
897 | 905 | 1.271379 | CAATGTCATGTGCAAGTGCCT | 59.729 | 47.619 | 0.00 | 0.00 | 41.18 | 4.75 |
898 | 906 | 0.885879 | ATGTCATGTGCAAGTGCCTG | 59.114 | 50.000 | 0.00 | 0.00 | 41.18 | 4.85 |
909 | 917 | 2.223433 | GCAAGTGCCTGCATAAGATGAC | 60.223 | 50.000 | 0.00 | 0.00 | 42.17 | 3.06 |
1089 | 1097 | 5.877012 | CACTGGTAGCACTATTTCTTCACAT | 59.123 | 40.000 | 0.00 | 0.00 | 0.00 | 3.21 |
1191 | 1199 | 2.698855 | GCCTTGAGCAAGAGATACCA | 57.301 | 50.000 | 11.61 | 0.00 | 42.97 | 3.25 |
1194 | 1202 | 3.683847 | GCCTTGAGCAAGAGATACCACAT | 60.684 | 47.826 | 11.61 | 0.00 | 42.97 | 3.21 |
1236 | 1244 | 6.171921 | AGAAGACAAGGAACAAGATGATCAG | 58.828 | 40.000 | 0.09 | 0.00 | 0.00 | 2.90 |
1246 | 1254 | 2.328819 | AGATGATCAGGAGCTGCAAC | 57.671 | 50.000 | 8.35 | 0.00 | 0.00 | 4.17 |
1267 | 1275 | 4.792068 | ACTCCCAAGTGATCAAGTTGAAA | 58.208 | 39.130 | 10.14 | 0.00 | 41.10 | 2.69 |
1372 | 1380 | 5.469084 | GTCATACATGAGCATGATGTGTCAT | 59.531 | 40.000 | 16.70 | 6.60 | 44.51 | 3.06 |
1462 | 1471 | 5.192927 | TGCCATCACTTAAGGTAGATTTGG | 58.807 | 41.667 | 7.53 | 8.34 | 0.00 | 3.28 |
1489 | 1498 | 6.387041 | ACTATTTGCTTGGACATGATCATG | 57.613 | 37.500 | 29.95 | 29.95 | 44.15 | 3.07 |
1547 | 1556 | 4.038763 | TGATCACAGTTACTTTCCTCGTGT | 59.961 | 41.667 | 0.00 | 0.00 | 0.00 | 4.49 |
1549 | 1558 | 4.116961 | TCACAGTTACTTTCCTCGTGTTG | 58.883 | 43.478 | 0.00 | 0.00 | 0.00 | 3.33 |
1550 | 1559 | 3.869246 | CACAGTTACTTTCCTCGTGTTGT | 59.131 | 43.478 | 0.00 | 0.00 | 0.00 | 3.32 |
1551 | 1560 | 5.045215 | CACAGTTACTTTCCTCGTGTTGTA | 58.955 | 41.667 | 0.00 | 0.00 | 0.00 | 2.41 |
1552 | 1561 | 5.521010 | CACAGTTACTTTCCTCGTGTTGTAA | 59.479 | 40.000 | 0.00 | 0.00 | 0.00 | 2.41 |
1553 | 1562 | 6.202188 | CACAGTTACTTTCCTCGTGTTGTAAT | 59.798 | 38.462 | 0.00 | 0.00 | 0.00 | 1.89 |
1554 | 1563 | 6.423001 | ACAGTTACTTTCCTCGTGTTGTAATC | 59.577 | 38.462 | 0.00 | 0.00 | 0.00 | 1.75 |
1555 | 1564 | 6.645415 | CAGTTACTTTCCTCGTGTTGTAATCT | 59.355 | 38.462 | 0.00 | 0.00 | 0.00 | 2.40 |
1556 | 1565 | 6.867293 | AGTTACTTTCCTCGTGTTGTAATCTC | 59.133 | 38.462 | 0.00 | 0.00 | 0.00 | 2.75 |
1557 | 1566 | 5.470047 | ACTTTCCTCGTGTTGTAATCTCT | 57.530 | 39.130 | 0.00 | 0.00 | 0.00 | 3.10 |
1558 | 1567 | 5.855045 | ACTTTCCTCGTGTTGTAATCTCTT | 58.145 | 37.500 | 0.00 | 0.00 | 0.00 | 2.85 |
1559 | 1568 | 5.927115 | ACTTTCCTCGTGTTGTAATCTCTTC | 59.073 | 40.000 | 0.00 | 0.00 | 0.00 | 2.87 |
1560 | 1569 | 5.723672 | TTCCTCGTGTTGTAATCTCTTCT | 57.276 | 39.130 | 0.00 | 0.00 | 0.00 | 2.85 |
1561 | 1570 | 5.312120 | TCCTCGTGTTGTAATCTCTTCTC | 57.688 | 43.478 | 0.00 | 0.00 | 0.00 | 2.87 |
1562 | 1571 | 4.765339 | TCCTCGTGTTGTAATCTCTTCTCA | 59.235 | 41.667 | 0.00 | 0.00 | 0.00 | 3.27 |
1563 | 1572 | 5.419155 | TCCTCGTGTTGTAATCTCTTCTCAT | 59.581 | 40.000 | 0.00 | 0.00 | 0.00 | 2.90 |
1564 | 1573 | 6.071334 | TCCTCGTGTTGTAATCTCTTCTCATT | 60.071 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
1565 | 1574 | 6.035435 | CCTCGTGTTGTAATCTCTTCTCATTG | 59.965 | 42.308 | 0.00 | 0.00 | 0.00 | 2.82 |
1566 | 1575 | 6.455647 | TCGTGTTGTAATCTCTTCTCATTGT | 58.544 | 36.000 | 0.00 | 0.00 | 0.00 | 2.71 |
1567 | 1576 | 6.586463 | TCGTGTTGTAATCTCTTCTCATTGTC | 59.414 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
1568 | 1577 | 6.587990 | CGTGTTGTAATCTCTTCTCATTGTCT | 59.412 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
1569 | 1578 | 7.116948 | CGTGTTGTAATCTCTTCTCATTGTCTT | 59.883 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
1570 | 1579 | 8.778358 | GTGTTGTAATCTCTTCTCATTGTCTTT | 58.222 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
1571 | 1580 | 8.777413 | TGTTGTAATCTCTTCTCATTGTCTTTG | 58.223 | 33.333 | 0.00 | 0.00 | 0.00 | 2.77 |
1572 | 1581 | 8.778358 | GTTGTAATCTCTTCTCATTGTCTTTGT | 58.222 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
1573 | 1582 | 8.908786 | TGTAATCTCTTCTCATTGTCTTTGTT | 57.091 | 30.769 | 0.00 | 0.00 | 0.00 | 2.83 |
1574 | 1583 | 8.993121 | TGTAATCTCTTCTCATTGTCTTTGTTC | 58.007 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
1575 | 1584 | 6.718454 | ATCTCTTCTCATTGTCTTTGTTCG | 57.282 | 37.500 | 0.00 | 0.00 | 0.00 | 3.95 |
1576 | 1585 | 4.449068 | TCTCTTCTCATTGTCTTTGTTCGC | 59.551 | 41.667 | 0.00 | 0.00 | 0.00 | 4.70 |
1577 | 1586 | 4.380531 | TCTTCTCATTGTCTTTGTTCGCT | 58.619 | 39.130 | 0.00 | 0.00 | 0.00 | 4.93 |
1578 | 1587 | 4.816385 | TCTTCTCATTGTCTTTGTTCGCTT | 59.184 | 37.500 | 0.00 | 0.00 | 0.00 | 4.68 |
1579 | 1588 | 5.296780 | TCTTCTCATTGTCTTTGTTCGCTTT | 59.703 | 36.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1580 | 1589 | 6.481976 | TCTTCTCATTGTCTTTGTTCGCTTTA | 59.518 | 34.615 | 0.00 | 0.00 | 0.00 | 1.85 |
1581 | 1590 | 6.801539 | TCTCATTGTCTTTGTTCGCTTTAT | 57.198 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
1582 | 1591 | 7.202016 | TCTCATTGTCTTTGTTCGCTTTATT | 57.798 | 32.000 | 0.00 | 0.00 | 0.00 | 1.40 |
1583 | 1592 | 8.317891 | TCTCATTGTCTTTGTTCGCTTTATTA | 57.682 | 30.769 | 0.00 | 0.00 | 0.00 | 0.98 |
1584 | 1593 | 8.946085 | TCTCATTGTCTTTGTTCGCTTTATTAT | 58.054 | 29.630 | 0.00 | 0.00 | 0.00 | 1.28 |
1585 | 1594 | 9.214953 | CTCATTGTCTTTGTTCGCTTTATTATC | 57.785 | 33.333 | 0.00 | 0.00 | 0.00 | 1.75 |
1586 | 1595 | 8.181573 | TCATTGTCTTTGTTCGCTTTATTATCC | 58.818 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
1587 | 1596 | 6.431198 | TGTCTTTGTTCGCTTTATTATCCC | 57.569 | 37.500 | 0.00 | 0.00 | 0.00 | 3.85 |
1588 | 1597 | 5.064198 | TGTCTTTGTTCGCTTTATTATCCCG | 59.936 | 40.000 | 0.00 | 0.00 | 0.00 | 5.14 |
1589 | 1598 | 5.064325 | GTCTTTGTTCGCTTTATTATCCCGT | 59.936 | 40.000 | 0.00 | 0.00 | 0.00 | 5.28 |
1590 | 1599 | 5.644636 | TCTTTGTTCGCTTTATTATCCCGTT | 59.355 | 36.000 | 0.00 | 0.00 | 0.00 | 4.44 |
1591 | 1600 | 4.868450 | TGTTCGCTTTATTATCCCGTTG | 57.132 | 40.909 | 0.00 | 0.00 | 0.00 | 4.10 |
1592 | 1601 | 4.255301 | TGTTCGCTTTATTATCCCGTTGT | 58.745 | 39.130 | 0.00 | 0.00 | 0.00 | 3.32 |
1593 | 1602 | 4.093703 | TGTTCGCTTTATTATCCCGTTGTG | 59.906 | 41.667 | 0.00 | 0.00 | 0.00 | 3.33 |
1594 | 1603 | 4.126208 | TCGCTTTATTATCCCGTTGTGA | 57.874 | 40.909 | 0.00 | 0.00 | 0.00 | 3.58 |
1595 | 1604 | 4.116961 | TCGCTTTATTATCCCGTTGTGAG | 58.883 | 43.478 | 0.00 | 0.00 | 0.00 | 3.51 |
1596 | 1605 | 4.116961 | CGCTTTATTATCCCGTTGTGAGA | 58.883 | 43.478 | 0.00 | 0.00 | 0.00 | 3.27 |
1597 | 1606 | 4.569162 | CGCTTTATTATCCCGTTGTGAGAA | 59.431 | 41.667 | 0.00 | 0.00 | 0.00 | 2.87 |
1598 | 1607 | 5.236478 | CGCTTTATTATCCCGTTGTGAGAAT | 59.764 | 40.000 | 0.00 | 0.00 | 0.00 | 2.40 |
1599 | 1608 | 6.430451 | GCTTTATTATCCCGTTGTGAGAATG | 58.570 | 40.000 | 0.00 | 0.00 | 0.00 | 2.67 |
1600 | 1609 | 6.513393 | GCTTTATTATCCCGTTGTGAGAATGG | 60.513 | 42.308 | 0.00 | 0.00 | 0.00 | 3.16 |
1601 | 1610 | 2.325583 | TATCCCGTTGTGAGAATGGC | 57.674 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
1602 | 1611 | 0.620556 | ATCCCGTTGTGAGAATGGCT | 59.379 | 50.000 | 0.00 | 0.00 | 0.00 | 4.75 |
1603 | 1612 | 1.271856 | TCCCGTTGTGAGAATGGCTA | 58.728 | 50.000 | 0.00 | 0.00 | 0.00 | 3.93 |
1604 | 1613 | 1.207089 | TCCCGTTGTGAGAATGGCTAG | 59.793 | 52.381 | 0.00 | 0.00 | 0.00 | 3.42 |
1692 | 1701 | 5.222079 | TCATGTTAGTGTTCACCTTGCTA | 57.778 | 39.130 | 0.00 | 0.00 | 0.00 | 3.49 |
1709 | 1718 | 7.227512 | CACCTTGCTAATTTCTACCATCCTAAG | 59.772 | 40.741 | 0.00 | 0.00 | 0.00 | 2.18 |
1928 | 1943 | 1.619654 | CAAGGGGCACACATGAAGAA | 58.380 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
1929 | 1944 | 1.542915 | CAAGGGGCACACATGAAGAAG | 59.457 | 52.381 | 0.00 | 0.00 | 0.00 | 2.85 |
1930 | 1945 | 1.067295 | AGGGGCACACATGAAGAAGA | 58.933 | 50.000 | 0.00 | 0.00 | 0.00 | 2.87 |
1952 | 1967 | 5.046014 | AGAGTGAAGATGGAGTATGCTTGTT | 60.046 | 40.000 | 0.00 | 0.00 | 0.00 | 2.83 |
2041 | 2089 | 2.170166 | GCTGTTTCATGACCCATTCCA | 58.830 | 47.619 | 0.00 | 0.00 | 0.00 | 3.53 |
2126 | 2184 | 4.436113 | AAATGTTGCCCCACTGATTTTT | 57.564 | 36.364 | 0.00 | 0.00 | 0.00 | 1.94 |
2210 | 2272 | 5.528690 | GTGATCTACATATTGCTTGCTTGGA | 59.471 | 40.000 | 0.00 | 0.00 | 0.00 | 3.53 |
2233 | 2296 | 9.905713 | TGGATGAAATTAGTGAAAGCTATTAGT | 57.094 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
2303 | 2368 | 7.915293 | TCATTTTCTGCTTTTACCTCGATAA | 57.085 | 32.000 | 0.00 | 0.00 | 0.00 | 1.75 |
2336 | 2401 | 8.621532 | TCATTAAGTGTTAGATGCTGAGTTTT | 57.378 | 30.769 | 0.00 | 0.00 | 0.00 | 2.43 |
2399 | 2465 | 7.177568 | CACTATGGACTAGTATGCTATGTTCCT | 59.822 | 40.741 | 0.00 | 1.02 | 38.68 | 3.36 |
2867 | 2975 | 1.621992 | TAGGAACCATTTGGCGCAAA | 58.378 | 45.000 | 10.83 | 0.00 | 39.32 | 3.68 |
2868 | 2976 | 0.975887 | AGGAACCATTTGGCGCAAAT | 59.024 | 45.000 | 10.83 | 10.73 | 43.71 | 2.32 |
2870 | 2978 | 2.564947 | AGGAACCATTTGGCGCAAATAA | 59.435 | 40.909 | 10.83 | 0.00 | 41.40 | 1.40 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 3.103007 | CAACGCGATTGATGTAGTCGTA | 58.897 | 45.455 | 15.93 | 0.00 | 41.23 | 3.43 |
2 | 3 | 1.917955 | ACAACGCGATTGATGTAGTCG | 59.082 | 47.619 | 15.93 | 0.00 | 41.23 | 4.18 |
3 | 4 | 2.534939 | GCACAACGCGATTGATGTAGTC | 60.535 | 50.000 | 15.93 | 0.00 | 41.23 | 2.59 |
4 | 5 | 1.393539 | GCACAACGCGATTGATGTAGT | 59.606 | 47.619 | 15.93 | 0.00 | 41.23 | 2.73 |
5 | 6 | 2.077155 | GCACAACGCGATTGATGTAG | 57.923 | 50.000 | 15.93 | 6.09 | 41.23 | 2.74 |
34 | 35 | 1.226603 | CCCTCGTAGACCGAAAGCG | 60.227 | 63.158 | 0.00 | 0.00 | 46.75 | 4.68 |
35 | 36 | 1.098050 | TACCCTCGTAGACCGAAAGC | 58.902 | 55.000 | 0.00 | 0.00 | 46.75 | 3.51 |
36 | 37 | 1.063174 | CGTACCCTCGTAGACCGAAAG | 59.937 | 57.143 | 0.00 | 0.00 | 46.75 | 2.62 |
37 | 38 | 1.086696 | CGTACCCTCGTAGACCGAAA | 58.913 | 55.000 | 0.00 | 0.00 | 46.75 | 3.46 |
38 | 39 | 0.036388 | ACGTACCCTCGTAGACCGAA | 60.036 | 55.000 | 0.00 | 0.00 | 46.75 | 4.30 |
39 | 40 | 0.821517 | TACGTACCCTCGTAGACCGA | 59.178 | 55.000 | 0.00 | 0.00 | 45.00 | 4.69 |
40 | 41 | 3.362581 | TACGTACCCTCGTAGACCG | 57.637 | 57.895 | 0.00 | 0.00 | 43.80 | 4.79 |
45 | 46 | 2.028112 | AGTGTGTCTACGTACCCTCGTA | 60.028 | 50.000 | 0.00 | 0.00 | 43.80 | 3.43 |
46 | 47 | 1.160137 | GTGTGTCTACGTACCCTCGT | 58.840 | 55.000 | 0.00 | 0.00 | 45.97 | 4.18 |
47 | 48 | 1.396301 | GAGTGTGTCTACGTACCCTCG | 59.604 | 57.143 | 0.00 | 0.00 | 0.00 | 4.63 |
48 | 49 | 2.677337 | GAGAGTGTGTCTACGTACCCTC | 59.323 | 54.545 | 0.00 | 0.00 | 34.71 | 4.30 |
49 | 50 | 2.617532 | GGAGAGTGTGTCTACGTACCCT | 60.618 | 54.545 | 0.00 | 0.00 | 34.71 | 4.34 |
50 | 51 | 1.742268 | GGAGAGTGTGTCTACGTACCC | 59.258 | 57.143 | 0.00 | 0.00 | 34.71 | 3.69 |
51 | 52 | 1.742268 | GGGAGAGTGTGTCTACGTACC | 59.258 | 57.143 | 0.00 | 0.00 | 36.91 | 3.34 |
52 | 53 | 1.742268 | GGGGAGAGTGTGTCTACGTAC | 59.258 | 57.143 | 0.00 | 0.00 | 36.91 | 3.67 |
53 | 54 | 1.632409 | AGGGGAGAGTGTGTCTACGTA | 59.368 | 52.381 | 0.00 | 0.00 | 36.91 | 3.57 |
54 | 55 | 0.404812 | AGGGGAGAGTGTGTCTACGT | 59.595 | 55.000 | 0.00 | 0.00 | 36.91 | 3.57 |
55 | 56 | 1.096416 | GAGGGGAGAGTGTGTCTACG | 58.904 | 60.000 | 0.00 | 0.00 | 36.91 | 3.51 |
56 | 57 | 2.291024 | TGAGAGGGGAGAGTGTGTCTAC | 60.291 | 54.545 | 0.00 | 0.00 | 34.71 | 2.59 |
57 | 58 | 1.993301 | TGAGAGGGGAGAGTGTGTCTA | 59.007 | 52.381 | 0.00 | 0.00 | 34.71 | 2.59 |
58 | 59 | 0.780637 | TGAGAGGGGAGAGTGTGTCT | 59.219 | 55.000 | 0.00 | 0.00 | 38.71 | 3.41 |
59 | 60 | 1.859302 | ATGAGAGGGGAGAGTGTGTC | 58.141 | 55.000 | 0.00 | 0.00 | 0.00 | 3.67 |
60 | 61 | 1.905215 | CAATGAGAGGGGAGAGTGTGT | 59.095 | 52.381 | 0.00 | 0.00 | 0.00 | 3.72 |
61 | 62 | 1.406614 | GCAATGAGAGGGGAGAGTGTG | 60.407 | 57.143 | 0.00 | 0.00 | 0.00 | 3.82 |
62 | 63 | 0.908198 | GCAATGAGAGGGGAGAGTGT | 59.092 | 55.000 | 0.00 | 0.00 | 0.00 | 3.55 |
63 | 64 | 1.202330 | AGCAATGAGAGGGGAGAGTG | 58.798 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
64 | 65 | 2.856760 | TAGCAATGAGAGGGGAGAGT | 57.143 | 50.000 | 0.00 | 0.00 | 0.00 | 3.24 |
65 | 66 | 2.289569 | GCATAGCAATGAGAGGGGAGAG | 60.290 | 54.545 | 0.00 | 0.00 | 34.84 | 3.20 |
66 | 67 | 1.696336 | GCATAGCAATGAGAGGGGAGA | 59.304 | 52.381 | 0.00 | 0.00 | 34.84 | 3.71 |
67 | 68 | 1.419012 | TGCATAGCAATGAGAGGGGAG | 59.581 | 52.381 | 0.00 | 0.00 | 34.76 | 4.30 |
68 | 69 | 1.510492 | TGCATAGCAATGAGAGGGGA | 58.490 | 50.000 | 0.00 | 0.00 | 34.76 | 4.81 |
69 | 70 | 2.224695 | TGATGCATAGCAATGAGAGGGG | 60.225 | 50.000 | 0.00 | 0.00 | 43.62 | 4.79 |
70 | 71 | 2.812591 | GTGATGCATAGCAATGAGAGGG | 59.187 | 50.000 | 0.00 | 0.00 | 43.62 | 4.30 |
71 | 72 | 2.812591 | GGTGATGCATAGCAATGAGAGG | 59.187 | 50.000 | 0.00 | 0.00 | 43.62 | 3.69 |
72 | 73 | 3.473625 | TGGTGATGCATAGCAATGAGAG | 58.526 | 45.455 | 0.00 | 0.00 | 43.62 | 3.20 |
73 | 74 | 3.564053 | TGGTGATGCATAGCAATGAGA | 57.436 | 42.857 | 0.00 | 0.00 | 43.62 | 3.27 |
74 | 75 | 3.818773 | TCATGGTGATGCATAGCAATGAG | 59.181 | 43.478 | 13.21 | 5.62 | 43.62 | 2.90 |
75 | 76 | 3.822940 | TCATGGTGATGCATAGCAATGA | 58.177 | 40.909 | 13.21 | 13.21 | 43.62 | 2.57 |
76 | 77 | 4.459337 | AGATCATGGTGATGCATAGCAATG | 59.541 | 41.667 | 0.00 | 5.10 | 43.62 | 2.82 |
77 | 78 | 4.663334 | AGATCATGGTGATGCATAGCAAT | 58.337 | 39.130 | 0.00 | 0.00 | 43.62 | 3.56 |
78 | 79 | 4.094830 | AGATCATGGTGATGCATAGCAA | 57.905 | 40.909 | 0.00 | 0.00 | 43.62 | 3.91 |
79 | 80 | 3.782656 | AGATCATGGTGATGCATAGCA | 57.217 | 42.857 | 0.00 | 4.86 | 44.86 | 3.49 |
80 | 81 | 3.366070 | GCAAGATCATGGTGATGCATAGC | 60.366 | 47.826 | 0.00 | 0.00 | 37.20 | 2.97 |
81 | 82 | 3.818773 | TGCAAGATCATGGTGATGCATAG | 59.181 | 43.478 | 10.42 | 0.00 | 35.67 | 2.23 |
82 | 83 | 3.822940 | TGCAAGATCATGGTGATGCATA | 58.177 | 40.909 | 10.42 | 0.00 | 35.67 | 3.14 |
83 | 84 | 2.661718 | TGCAAGATCATGGTGATGCAT | 58.338 | 42.857 | 10.42 | 0.00 | 35.67 | 3.96 |
84 | 85 | 2.131776 | TGCAAGATCATGGTGATGCA | 57.868 | 45.000 | 10.42 | 10.42 | 37.51 | 3.96 |
85 | 86 | 2.361119 | ACATGCAAGATCATGGTGATGC | 59.639 | 45.455 | 5.77 | 5.77 | 46.02 | 3.91 |
86 | 87 | 3.795488 | GCACATGCAAGATCATGGTGATG | 60.795 | 47.826 | 9.18 | 0.66 | 46.02 | 3.07 |
87 | 88 | 2.361119 | GCACATGCAAGATCATGGTGAT | 59.639 | 45.455 | 9.18 | 0.00 | 46.02 | 3.06 |
88 | 89 | 1.746787 | GCACATGCAAGATCATGGTGA | 59.253 | 47.619 | 9.18 | 0.00 | 46.02 | 4.02 |
89 | 90 | 1.533129 | CGCACATGCAAGATCATGGTG | 60.533 | 52.381 | 4.49 | 1.26 | 46.02 | 4.17 |
90 | 91 | 0.736636 | CGCACATGCAAGATCATGGT | 59.263 | 50.000 | 4.49 | 0.00 | 46.02 | 3.55 |
91 | 92 | 0.736636 | ACGCACATGCAAGATCATGG | 59.263 | 50.000 | 4.49 | 0.00 | 46.02 | 3.66 |
92 | 93 | 2.032290 | CCTACGCACATGCAAGATCATG | 60.032 | 50.000 | 4.49 | 0.00 | 46.86 | 3.07 |
93 | 94 | 2.158914 | TCCTACGCACATGCAAGATCAT | 60.159 | 45.455 | 4.49 | 0.00 | 42.21 | 2.45 |
94 | 95 | 1.206849 | TCCTACGCACATGCAAGATCA | 59.793 | 47.619 | 4.49 | 0.00 | 42.21 | 2.92 |
95 | 96 | 1.939974 | TCCTACGCACATGCAAGATC | 58.060 | 50.000 | 4.49 | 0.00 | 42.21 | 2.75 |
96 | 97 | 2.627515 | ATCCTACGCACATGCAAGAT | 57.372 | 45.000 | 4.49 | 0.00 | 42.21 | 2.40 |
97 | 98 | 2.401583 | AATCCTACGCACATGCAAGA | 57.598 | 45.000 | 4.49 | 0.00 | 42.21 | 3.02 |
98 | 99 | 3.492421 | AAAATCCTACGCACATGCAAG | 57.508 | 42.857 | 4.49 | 0.69 | 42.21 | 4.01 |
99 | 100 | 3.932545 | AAAAATCCTACGCACATGCAA | 57.067 | 38.095 | 4.49 | 0.00 | 42.21 | 4.08 |
118 | 119 | 4.583489 | TGGGGAACGTAGTAATTGCAAAAA | 59.417 | 37.500 | 1.71 | 0.00 | 45.00 | 1.94 |
119 | 120 | 4.142790 | TGGGGAACGTAGTAATTGCAAAA | 58.857 | 39.130 | 1.71 | 0.00 | 45.00 | 2.44 |
120 | 121 | 3.752665 | TGGGGAACGTAGTAATTGCAAA | 58.247 | 40.909 | 1.71 | 0.00 | 45.00 | 3.68 |
121 | 122 | 3.420300 | TGGGGAACGTAGTAATTGCAA | 57.580 | 42.857 | 0.00 | 0.00 | 45.00 | 4.08 |
122 | 123 | 3.075884 | GTTGGGGAACGTAGTAATTGCA | 58.924 | 45.455 | 0.00 | 0.00 | 45.00 | 4.08 |
123 | 124 | 3.075884 | TGTTGGGGAACGTAGTAATTGC | 58.924 | 45.455 | 0.00 | 0.00 | 45.00 | 3.56 |
124 | 125 | 4.066490 | TGTGTTGGGGAACGTAGTAATTG | 58.934 | 43.478 | 0.00 | 0.00 | 45.00 | 2.32 |
125 | 126 | 4.354893 | TGTGTTGGGGAACGTAGTAATT | 57.645 | 40.909 | 0.00 | 0.00 | 45.00 | 1.40 |
126 | 127 | 4.563140 | ATGTGTTGGGGAACGTAGTAAT | 57.437 | 40.909 | 0.00 | 0.00 | 45.00 | 1.89 |
127 | 128 | 4.354893 | AATGTGTTGGGGAACGTAGTAA | 57.645 | 40.909 | 0.00 | 0.00 | 45.00 | 2.24 |
128 | 129 | 4.354893 | AAATGTGTTGGGGAACGTAGTA | 57.645 | 40.909 | 0.00 | 0.00 | 45.00 | 1.82 |
129 | 130 | 7.180165 | CCAAAAATGTGTTGGGGAACGTAGT | 62.180 | 44.000 | 0.00 | 0.00 | 42.34 | 2.73 |
130 | 131 | 4.295051 | CAAAAATGTGTTGGGGAACGTAG | 58.705 | 43.478 | 0.00 | 0.00 | 0.00 | 3.51 |
131 | 132 | 3.068307 | CCAAAAATGTGTTGGGGAACGTA | 59.932 | 43.478 | 0.00 | 0.00 | 41.64 | 3.57 |
132 | 133 | 2.159028 | CCAAAAATGTGTTGGGGAACGT | 60.159 | 45.455 | 0.00 | 0.00 | 41.64 | 3.99 |
133 | 134 | 2.478831 | CCAAAAATGTGTTGGGGAACG | 58.521 | 47.619 | 0.00 | 0.00 | 41.64 | 3.95 |
134 | 135 | 2.217750 | GCCAAAAATGTGTTGGGGAAC | 58.782 | 47.619 | 5.41 | 0.00 | 44.87 | 3.62 |
135 | 136 | 2.629336 | GCCAAAAATGTGTTGGGGAA | 57.371 | 45.000 | 5.41 | 0.00 | 44.87 | 3.97 |
138 | 139 | 1.227342 | GGCGCCAAAAATGTGTTGGG | 61.227 | 55.000 | 24.80 | 0.00 | 44.87 | 4.12 |
140 | 141 | 0.873743 | ACGGCGCCAAAAATGTGTTG | 60.874 | 50.000 | 28.98 | 7.69 | 0.00 | 3.33 |
141 | 142 | 0.179097 | AACGGCGCCAAAAATGTGTT | 60.179 | 45.000 | 28.98 | 16.52 | 0.00 | 3.32 |
142 | 143 | 0.873743 | CAACGGCGCCAAAAATGTGT | 60.874 | 50.000 | 28.98 | 10.68 | 0.00 | 3.72 |
143 | 144 | 1.851978 | CAACGGCGCCAAAAATGTG | 59.148 | 52.632 | 28.98 | 9.93 | 0.00 | 3.21 |
144 | 145 | 1.953642 | GCAACGGCGCCAAAAATGT | 60.954 | 52.632 | 28.98 | 12.36 | 0.00 | 2.71 |
145 | 146 | 2.852507 | GCAACGGCGCCAAAAATG | 59.147 | 55.556 | 28.98 | 17.36 | 0.00 | 2.32 |
198 | 200 | 8.611757 | CCAAAATGAAAACAAGAAAAACCTAGG | 58.388 | 33.333 | 7.41 | 7.41 | 0.00 | 3.02 |
233 | 237 | 9.593134 | GGTTAATGGCTAGAGATATATCACAAG | 57.407 | 37.037 | 15.08 | 9.12 | 0.00 | 3.16 |
296 | 303 | 3.436243 | AGGATAATCCAACCCGCAAAAA | 58.564 | 40.909 | 0.00 | 0.00 | 39.61 | 1.94 |
303 | 310 | 6.183360 | CCATTTTTGAGAGGATAATCCAACCC | 60.183 | 42.308 | 0.00 | 0.00 | 39.61 | 4.11 |
412 | 420 | 5.578727 | GCCGAGCTAAATCATCTAATCGATT | 59.421 | 40.000 | 16.15 | 16.15 | 33.27 | 3.34 |
531 | 539 | 2.182537 | GCAAGCGAATGGCCTTGG | 59.817 | 61.111 | 3.32 | 0.00 | 45.17 | 3.61 |
619 | 627 | 7.035004 | CACCCATATGAGTAATTGTTTTGGTG | 58.965 | 38.462 | 3.65 | 4.55 | 0.00 | 4.17 |
706 | 714 | 7.090319 | ACCTAAATCCCTGCATATGATTACA | 57.910 | 36.000 | 6.97 | 0.00 | 0.00 | 2.41 |
779 | 787 | 4.162320 | CCTGGTGTTGAGGTACATGAGTAT | 59.838 | 45.833 | 0.00 | 0.00 | 31.84 | 2.12 |
827 | 835 | 1.422024 | TCGGTTGACCAAATGGAGGAA | 59.578 | 47.619 | 6.42 | 0.00 | 38.94 | 3.36 |
881 | 889 | 1.080974 | GCAGGCACTTGCACATGAC | 60.081 | 57.895 | 0.00 | 0.00 | 44.36 | 3.06 |
897 | 905 | 3.133691 | GCCATCGAAGTCATCTTATGCA | 58.866 | 45.455 | 0.00 | 0.00 | 33.64 | 3.96 |
898 | 906 | 3.133691 | TGCCATCGAAGTCATCTTATGC | 58.866 | 45.455 | 0.00 | 0.00 | 33.64 | 3.14 |
901 | 909 | 5.301805 | TGTCTATGCCATCGAAGTCATCTTA | 59.698 | 40.000 | 0.00 | 0.00 | 33.64 | 2.10 |
909 | 917 | 2.799412 | GAGCTTGTCTATGCCATCGAAG | 59.201 | 50.000 | 0.00 | 0.00 | 0.00 | 3.79 |
1089 | 1097 | 3.520721 | TCCCAGAATTGCTCATCTCAAGA | 59.479 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
1207 | 1215 | 7.509546 | TCATCTTGTTCCTTGTCTTCTAGTTT | 58.490 | 34.615 | 0.00 | 0.00 | 0.00 | 2.66 |
1246 | 1254 | 5.300286 | AGTTTTCAACTTGATCACTTGGGAG | 59.700 | 40.000 | 10.92 | 1.26 | 39.04 | 4.30 |
1267 | 1275 | 7.350382 | TCTTCAGGAGTAGTAGATGATGAGTT | 58.650 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
1372 | 1380 | 5.222027 | TGTCATCAAGAGGATTGGGTAAACA | 60.222 | 40.000 | 0.00 | 0.00 | 32.57 | 2.83 |
1462 | 1471 | 7.315142 | TGATCATGTCCAAGCAAATAGTTTTC | 58.685 | 34.615 | 0.00 | 0.00 | 0.00 | 2.29 |
1489 | 1498 | 0.609131 | ATGCCACTAACAGGGTGTGC | 60.609 | 55.000 | 0.00 | 0.00 | 34.18 | 4.57 |
1547 | 1556 | 8.908786 | ACAAAGACAATGAGAAGAGATTACAA | 57.091 | 30.769 | 0.00 | 0.00 | 0.00 | 2.41 |
1549 | 1558 | 8.165428 | CGAACAAAGACAATGAGAAGAGATTAC | 58.835 | 37.037 | 0.00 | 0.00 | 0.00 | 1.89 |
1550 | 1559 | 7.148573 | GCGAACAAAGACAATGAGAAGAGATTA | 60.149 | 37.037 | 0.00 | 0.00 | 0.00 | 1.75 |
1551 | 1560 | 6.348050 | GCGAACAAAGACAATGAGAAGAGATT | 60.348 | 38.462 | 0.00 | 0.00 | 0.00 | 2.40 |
1552 | 1561 | 5.121454 | GCGAACAAAGACAATGAGAAGAGAT | 59.879 | 40.000 | 0.00 | 0.00 | 0.00 | 2.75 |
1553 | 1562 | 4.449068 | GCGAACAAAGACAATGAGAAGAGA | 59.551 | 41.667 | 0.00 | 0.00 | 0.00 | 3.10 |
1554 | 1563 | 4.450419 | AGCGAACAAAGACAATGAGAAGAG | 59.550 | 41.667 | 0.00 | 0.00 | 0.00 | 2.85 |
1555 | 1564 | 4.380531 | AGCGAACAAAGACAATGAGAAGA | 58.619 | 39.130 | 0.00 | 0.00 | 0.00 | 2.87 |
1556 | 1565 | 4.739046 | AGCGAACAAAGACAATGAGAAG | 57.261 | 40.909 | 0.00 | 0.00 | 0.00 | 2.85 |
1557 | 1566 | 5.499139 | AAAGCGAACAAAGACAATGAGAA | 57.501 | 34.783 | 0.00 | 0.00 | 0.00 | 2.87 |
1558 | 1567 | 6.801539 | ATAAAGCGAACAAAGACAATGAGA | 57.198 | 33.333 | 0.00 | 0.00 | 0.00 | 3.27 |
1559 | 1568 | 9.214953 | GATAATAAAGCGAACAAAGACAATGAG | 57.785 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
1560 | 1569 | 8.181573 | GGATAATAAAGCGAACAAAGACAATGA | 58.818 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
1561 | 1570 | 7.432252 | GGGATAATAAAGCGAACAAAGACAATG | 59.568 | 37.037 | 0.00 | 0.00 | 0.00 | 2.82 |
1562 | 1571 | 7.480810 | GGGATAATAAAGCGAACAAAGACAAT | 58.519 | 34.615 | 0.00 | 0.00 | 0.00 | 2.71 |
1563 | 1572 | 6.402766 | CGGGATAATAAAGCGAACAAAGACAA | 60.403 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
1564 | 1573 | 5.064198 | CGGGATAATAAAGCGAACAAAGACA | 59.936 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
1565 | 1574 | 5.064325 | ACGGGATAATAAAGCGAACAAAGAC | 59.936 | 40.000 | 0.00 | 0.00 | 0.00 | 3.01 |
1566 | 1575 | 5.180271 | ACGGGATAATAAAGCGAACAAAGA | 58.820 | 37.500 | 0.00 | 0.00 | 0.00 | 2.52 |
1567 | 1576 | 5.479716 | ACGGGATAATAAAGCGAACAAAG | 57.520 | 39.130 | 0.00 | 0.00 | 0.00 | 2.77 |
1568 | 1577 | 5.181622 | ACAACGGGATAATAAAGCGAACAAA | 59.818 | 36.000 | 0.00 | 0.00 | 0.00 | 2.83 |
1569 | 1578 | 4.696402 | ACAACGGGATAATAAAGCGAACAA | 59.304 | 37.500 | 0.00 | 0.00 | 0.00 | 2.83 |
1570 | 1579 | 4.093703 | CACAACGGGATAATAAAGCGAACA | 59.906 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
1571 | 1580 | 4.330620 | TCACAACGGGATAATAAAGCGAAC | 59.669 | 41.667 | 0.00 | 0.00 | 0.00 | 3.95 |
1572 | 1581 | 4.505808 | TCACAACGGGATAATAAAGCGAA | 58.494 | 39.130 | 0.00 | 0.00 | 0.00 | 4.70 |
1573 | 1582 | 4.116961 | CTCACAACGGGATAATAAAGCGA | 58.883 | 43.478 | 0.00 | 0.00 | 0.00 | 4.93 |
1574 | 1583 | 4.116961 | TCTCACAACGGGATAATAAAGCG | 58.883 | 43.478 | 0.00 | 0.00 | 0.00 | 4.68 |
1575 | 1584 | 6.430451 | CATTCTCACAACGGGATAATAAAGC | 58.570 | 40.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1576 | 1585 | 6.513393 | GCCATTCTCACAACGGGATAATAAAG | 60.513 | 42.308 | 0.00 | 0.00 | 0.00 | 1.85 |
1577 | 1586 | 5.298276 | GCCATTCTCACAACGGGATAATAAA | 59.702 | 40.000 | 0.00 | 0.00 | 0.00 | 1.40 |
1578 | 1587 | 4.819630 | GCCATTCTCACAACGGGATAATAA | 59.180 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
1579 | 1588 | 4.102524 | AGCCATTCTCACAACGGGATAATA | 59.897 | 41.667 | 0.00 | 0.00 | 0.00 | 0.98 |
1580 | 1589 | 3.117888 | AGCCATTCTCACAACGGGATAAT | 60.118 | 43.478 | 0.00 | 0.00 | 0.00 | 1.28 |
1581 | 1590 | 2.238646 | AGCCATTCTCACAACGGGATAA | 59.761 | 45.455 | 0.00 | 0.00 | 0.00 | 1.75 |
1582 | 1591 | 1.837439 | AGCCATTCTCACAACGGGATA | 59.163 | 47.619 | 0.00 | 0.00 | 0.00 | 2.59 |
1583 | 1592 | 0.620556 | AGCCATTCTCACAACGGGAT | 59.379 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1584 | 1593 | 1.207089 | CTAGCCATTCTCACAACGGGA | 59.793 | 52.381 | 0.00 | 0.00 | 0.00 | 5.14 |
1585 | 1594 | 1.207089 | TCTAGCCATTCTCACAACGGG | 59.793 | 52.381 | 0.00 | 0.00 | 0.00 | 5.28 |
1586 | 1595 | 2.093973 | ACTCTAGCCATTCTCACAACGG | 60.094 | 50.000 | 0.00 | 0.00 | 0.00 | 4.44 |
1587 | 1596 | 3.238108 | ACTCTAGCCATTCTCACAACG | 57.762 | 47.619 | 0.00 | 0.00 | 0.00 | 4.10 |
1588 | 1597 | 4.826556 | AGAACTCTAGCCATTCTCACAAC | 58.173 | 43.478 | 0.00 | 0.00 | 0.00 | 3.32 |
1589 | 1598 | 6.577103 | CATAGAACTCTAGCCATTCTCACAA | 58.423 | 40.000 | 6.32 | 0.00 | 34.55 | 3.33 |
1590 | 1599 | 5.452496 | GCATAGAACTCTAGCCATTCTCACA | 60.452 | 44.000 | 6.32 | 0.00 | 34.55 | 3.58 |
1591 | 1600 | 4.987912 | GCATAGAACTCTAGCCATTCTCAC | 59.012 | 45.833 | 6.32 | 0.00 | 34.55 | 3.51 |
1592 | 1601 | 4.898265 | AGCATAGAACTCTAGCCATTCTCA | 59.102 | 41.667 | 6.32 | 0.00 | 34.55 | 3.27 |
1593 | 1602 | 5.467035 | AGCATAGAACTCTAGCCATTCTC | 57.533 | 43.478 | 6.32 | 0.00 | 34.55 | 2.87 |
1594 | 1603 | 5.885449 | AAGCATAGAACTCTAGCCATTCT | 57.115 | 39.130 | 7.74 | 7.74 | 36.64 | 2.40 |
1595 | 1604 | 7.875041 | TCATTAAGCATAGAACTCTAGCCATTC | 59.125 | 37.037 | 0.00 | 0.00 | 0.00 | 2.67 |
1596 | 1605 | 7.739825 | TCATTAAGCATAGAACTCTAGCCATT | 58.260 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
1597 | 1606 | 7.308450 | TCATTAAGCATAGAACTCTAGCCAT | 57.692 | 36.000 | 0.00 | 0.00 | 0.00 | 4.40 |
1598 | 1607 | 6.731292 | TCATTAAGCATAGAACTCTAGCCA | 57.269 | 37.500 | 0.00 | 0.00 | 0.00 | 4.75 |
1599 | 1608 | 7.495934 | TGTTTCATTAAGCATAGAACTCTAGCC | 59.504 | 37.037 | 0.00 | 0.00 | 0.00 | 3.93 |
1600 | 1609 | 8.425577 | TGTTTCATTAAGCATAGAACTCTAGC | 57.574 | 34.615 | 0.00 | 0.00 | 0.00 | 3.42 |
1683 | 1692 | 5.440610 | AGGATGGTAGAAATTAGCAAGGTG | 58.559 | 41.667 | 0.00 | 0.00 | 0.00 | 4.00 |
1692 | 1701 | 5.300286 | GCACATGCTTAGGATGGTAGAAATT | 59.700 | 40.000 | 17.56 | 0.00 | 38.21 | 1.82 |
1928 | 1943 | 4.469227 | ACAAGCATACTCCATCTTCACTCT | 59.531 | 41.667 | 0.00 | 0.00 | 0.00 | 3.24 |
1929 | 1944 | 4.764172 | ACAAGCATACTCCATCTTCACTC | 58.236 | 43.478 | 0.00 | 0.00 | 0.00 | 3.51 |
1930 | 1945 | 4.833478 | ACAAGCATACTCCATCTTCACT | 57.167 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
1952 | 1967 | 2.549754 | CGGCTCTTCTTCTTTTGCTTCA | 59.450 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
2126 | 2184 | 5.945191 | TCTCATCAAGCACCATATGTCAAAA | 59.055 | 36.000 | 1.24 | 0.00 | 0.00 | 2.44 |
2303 | 2368 | 8.709308 | AGCATCTAACACTTAATGATCTAGGTT | 58.291 | 33.333 | 0.00 | 0.00 | 0.00 | 3.50 |
2399 | 2465 | 2.627945 | GTTCACATGCTACCGATCCAA | 58.372 | 47.619 | 0.00 | 0.00 | 0.00 | 3.53 |
2496 | 2564 | 4.500499 | TCCTACTGTAGGTAGTCAGACC | 57.500 | 50.000 | 28.21 | 0.00 | 46.32 | 3.85 |
2516 | 2589 | 2.487934 | CGATCCAGGGAACATGACATC | 58.512 | 52.381 | 0.00 | 0.00 | 0.00 | 3.06 |
2678 | 2778 | 3.132289 | CGAGAACATGGTATACACCTGGT | 59.868 | 47.826 | 5.01 | 0.00 | 45.98 | 4.00 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.