Multiple sequence alignment - TraesCS3B01G238700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G238700 chr3B 100.000 2382 0 0 1 2382 375172279 375174660 0.000000e+00 4399.0
1 TraesCS3B01G238700 chr3B 100.000 627 0 0 2558 3184 375174836 375175462 0.000000e+00 1158.0
2 TraesCS3B01G238700 chr3D 93.025 1147 25 11 770 1897 276092300 276091190 0.000000e+00 1624.0
3 TraesCS3B01G238700 chr3D 92.105 988 25 10 770 1739 276113435 276112483 0.000000e+00 1343.0
4 TraesCS3B01G238700 chr3D 96.581 468 6 5 1925 2382 276091191 276090724 0.000000e+00 767.0
5 TraesCS3B01G238700 chr3D 90.554 487 42 4 2698 3182 276081359 276080875 2.680000e-180 641.0
6 TraesCS3B01G238700 chr3D 90.554 487 42 4 2698 3182 276109777 276109293 2.680000e-180 641.0
7 TraesCS3B01G238700 chr3D 95.270 148 5 2 2558 2704 276090689 276090543 1.910000e-57 233.0
8 TraesCS3B01G238700 chr3A 95.154 681 22 4 574 1249 364133124 364133798 0.000000e+00 1064.0
9 TraesCS3B01G238700 chr3A 93.305 717 38 5 1278 1989 364139633 364140344 0.000000e+00 1050.0
10 TraesCS3B01G238700 chrUn 95.082 122 4 2 2584 2704 349572196 349572316 1.170000e-44 191.0
11 TraesCS3B01G238700 chr2A 71.987 307 64 18 2878 3176 747085711 747086003 1.580000e-08 71.3
12 TraesCS3B01G238700 chr2D 100.000 29 0 0 3127 3155 617049961 617049989 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G238700 chr3B 375172279 375175462 3183 False 2778.500000 4399 100.000000 1 3184 2 chr3B.!!$F1 3183
1 TraesCS3B01G238700 chr3D 276109293 276113435 4142 True 992.000000 1343 91.329500 770 3182 2 chr3D.!!$R3 2412
2 TraesCS3B01G238700 chr3D 276090543 276092300 1757 True 874.666667 1624 94.958667 770 2704 3 chr3D.!!$R2 1934
3 TraesCS3B01G238700 chr3A 364133124 364133798 674 False 1064.000000 1064 95.154000 574 1249 1 chr3A.!!$F1 675
4 TraesCS3B01G238700 chr3A 364139633 364140344 711 False 1050.000000 1050 93.305000 1278 1989 1 chr3A.!!$F2 711

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
334 335 0.031111 TCCTGTTCGGATGGAGGGAT 60.031 55.0 0.00 0.0 36.69 3.85 F
521 522 0.034186 TAGCATTGGCCACTTCCTGG 60.034 55.0 3.88 0.0 44.08 4.45 F
618 619 0.035439 GACATTCTTCCCTCCGCCAA 60.035 55.0 0.00 0.0 0.00 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1344 1363 0.034756 TTAACGCAGCAGCTCTTGGA 59.965 50.0 0.0 0.0 39.1 3.53 R
1900 1926 0.105964 TGGTTTGGTGTGAGACGAGG 59.894 55.0 0.0 0.0 0.0 4.63 R
2244 2648 0.385390 CCGGGATTGCCTAAACATGC 59.615 55.0 0.0 0.0 0.0 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 4.966249 GATATCATCCACATGCAACGATG 58.034 43.478 0.00 0.00 34.66 3.84
38 39 2.399916 TCATCCACATGCAACGATGA 57.600 45.000 11.94 11.94 38.96 2.92
39 40 2.921821 TCATCCACATGCAACGATGAT 58.078 42.857 11.94 0.38 36.95 2.45
40 41 2.614983 TCATCCACATGCAACGATGATG 59.385 45.455 11.94 10.56 36.95 3.07
41 42 2.112380 TCCACATGCAACGATGATGT 57.888 45.000 0.00 1.18 31.67 3.06
42 43 1.738908 TCCACATGCAACGATGATGTG 59.261 47.619 20.72 20.72 40.67 3.21
43 44 1.738908 CCACATGCAACGATGATGTGA 59.261 47.619 25.26 0.00 41.94 3.58
44 45 2.476686 CCACATGCAACGATGATGTGAC 60.477 50.000 25.26 0.91 41.94 3.67
45 46 2.160022 CACATGCAACGATGATGTGACA 59.840 45.455 22.02 0.00 41.94 3.58
46 47 2.160219 ACATGCAACGATGATGTGACAC 59.840 45.455 0.00 0.00 30.93 3.67
47 48 1.155889 TGCAACGATGATGTGACACC 58.844 50.000 2.45 0.00 0.00 4.16
48 49 0.447801 GCAACGATGATGTGACACCC 59.552 55.000 2.45 0.00 0.00 4.61
49 50 1.807139 CAACGATGATGTGACACCCA 58.193 50.000 2.45 1.64 0.00 4.51
50 51 1.464608 CAACGATGATGTGACACCCAC 59.535 52.381 2.45 0.00 45.88 4.61
59 60 4.736896 GACACCCACGTCCCGCTC 62.737 72.222 0.00 0.00 0.00 5.03
65 66 3.461773 CACGTCCCGCTCCTCCAT 61.462 66.667 0.00 0.00 0.00 3.41
66 67 3.461773 ACGTCCCGCTCCTCCATG 61.462 66.667 0.00 0.00 0.00 3.66
67 68 4.899239 CGTCCCGCTCCTCCATGC 62.899 72.222 0.00 0.00 0.00 4.06
68 69 3.785859 GTCCCGCTCCTCCATGCA 61.786 66.667 0.00 0.00 0.00 3.96
69 70 2.769621 TCCCGCTCCTCCATGCAT 60.770 61.111 0.00 0.00 0.00 3.96
70 71 2.593725 CCCGCTCCTCCATGCATG 60.594 66.667 20.19 20.19 0.00 4.06
71 72 3.285215 CCGCTCCTCCATGCATGC 61.285 66.667 21.69 11.82 0.00 4.06
72 73 2.515290 CGCTCCTCCATGCATGCA 60.515 61.111 25.04 25.04 0.00 3.96
73 74 1.897137 CGCTCCTCCATGCATGCAT 60.897 57.895 27.46 27.46 37.08 3.96
92 93 2.959372 CACACCAGTGCATGCAGG 59.041 61.111 23.41 22.10 39.21 4.85
93 94 1.900016 CACACCAGTGCATGCAGGT 60.900 57.895 23.41 22.83 39.21 4.00
94 95 2.959372 CACCAGTGCATGCAGGTG 59.041 61.111 32.55 32.55 44.72 4.00
95 96 2.282674 ACCAGTGCATGCAGGTGG 60.283 61.111 33.33 33.33 37.30 4.61
96 97 3.066190 CCAGTGCATGCAGGTGGG 61.066 66.667 29.94 21.18 31.11 4.61
97 98 3.755628 CAGTGCATGCAGGTGGGC 61.756 66.667 23.41 8.26 0.00 5.36
102 103 4.371417 CATGCAGGTGGGCCAGGT 62.371 66.667 6.40 0.00 37.19 4.00
103 104 2.613696 ATGCAGGTGGGCCAGGTA 60.614 61.111 6.40 0.00 37.19 3.08
104 105 2.983879 ATGCAGGTGGGCCAGGTAC 61.984 63.158 6.40 0.00 37.19 3.34
105 106 4.426313 GCAGGTGGGCCAGGTACC 62.426 72.222 6.40 2.73 37.19 3.34
106 107 2.933287 CAGGTGGGCCAGGTACCA 60.933 66.667 15.94 6.67 36.94 3.25
107 108 2.121689 AGGTGGGCCAGGTACCAA 60.122 61.111 15.94 0.00 38.73 3.67
108 109 2.035155 GGTGGGCCAGGTACCAAC 59.965 66.667 15.94 5.68 38.73 3.77
109 110 2.359478 GTGGGCCAGGTACCAACG 60.359 66.667 15.94 1.52 38.73 4.10
110 111 3.642503 TGGGCCAGGTACCAACGG 61.643 66.667 15.94 12.50 32.89 4.44
111 112 4.419921 GGGCCAGGTACCAACGGG 62.420 72.222 15.94 10.88 41.29 5.28
112 113 4.419921 GGCCAGGTACCAACGGGG 62.420 72.222 15.94 8.33 44.81 5.73
113 114 4.419921 GCCAGGTACCAACGGGGG 62.420 72.222 15.94 6.53 42.91 5.40
131 132 1.381851 GGAGGCATGATCCCCATCC 59.618 63.158 0.00 0.00 31.94 3.51
132 133 1.002868 GAGGCATGATCCCCATCCG 60.003 63.158 0.00 0.00 31.94 4.18
133 134 2.674380 GGCATGATCCCCATCCGC 60.674 66.667 0.00 0.00 31.94 5.54
134 135 2.113774 GCATGATCCCCATCCGCA 59.886 61.111 0.00 0.00 31.94 5.69
135 136 2.263741 GCATGATCCCCATCCGCAC 61.264 63.158 0.00 0.00 31.94 5.34
136 137 1.148949 CATGATCCCCATCCGCACA 59.851 57.895 0.00 0.00 31.94 4.57
137 138 0.251033 CATGATCCCCATCCGCACAT 60.251 55.000 0.00 0.00 31.94 3.21
138 139 0.037303 ATGATCCCCATCCGCACATC 59.963 55.000 0.00 0.00 0.00 3.06
139 140 1.302832 GATCCCCATCCGCACATCC 60.303 63.158 0.00 0.00 0.00 3.51
140 141 2.754664 GATCCCCATCCGCACATCCC 62.755 65.000 0.00 0.00 0.00 3.85
141 142 4.935495 CCCCATCCGCACATCCCG 62.935 72.222 0.00 0.00 0.00 5.14
144 145 4.854924 CATCCGCACATCCCGCCA 62.855 66.667 0.00 0.00 0.00 5.69
145 146 4.108299 ATCCGCACATCCCGCCAA 62.108 61.111 0.00 0.00 0.00 4.52
148 149 4.101790 CGCACATCCCGCCAACAC 62.102 66.667 0.00 0.00 0.00 3.32
149 150 3.747976 GCACATCCCGCCAACACC 61.748 66.667 0.00 0.00 0.00 4.16
150 151 3.430862 CACATCCCGCCAACACCG 61.431 66.667 0.00 0.00 0.00 4.94
151 152 3.632080 ACATCCCGCCAACACCGA 61.632 61.111 0.00 0.00 0.00 4.69
152 153 2.819595 CATCCCGCCAACACCGAG 60.820 66.667 0.00 0.00 0.00 4.63
153 154 4.096003 ATCCCGCCAACACCGAGG 62.096 66.667 0.00 0.00 0.00 4.63
156 157 4.096003 CCGCCAACACCGAGGGAT 62.096 66.667 0.00 0.00 0.00 3.85
157 158 2.511600 CGCCAACACCGAGGGATC 60.512 66.667 0.00 0.00 0.00 3.36
158 159 2.668632 GCCAACACCGAGGGATCA 59.331 61.111 0.00 0.00 0.00 2.92
159 160 1.450312 GCCAACACCGAGGGATCAG 60.450 63.158 0.00 0.00 0.00 2.90
160 161 1.450312 CCAACACCGAGGGATCAGC 60.450 63.158 0.00 0.00 0.00 4.26
161 162 1.296392 CAACACCGAGGGATCAGCA 59.704 57.895 0.00 0.00 0.00 4.41
162 163 0.742281 CAACACCGAGGGATCAGCAG 60.742 60.000 0.00 0.00 0.00 4.24
163 164 1.903877 AACACCGAGGGATCAGCAGG 61.904 60.000 0.00 0.00 0.00 4.85
164 165 2.039624 ACCGAGGGATCAGCAGGT 59.960 61.111 0.00 0.00 0.00 4.00
165 166 2.362369 ACCGAGGGATCAGCAGGTG 61.362 63.158 0.00 0.00 0.00 4.00
166 167 2.503061 CGAGGGATCAGCAGGTGG 59.497 66.667 0.00 0.00 0.00 4.61
167 168 2.914289 GAGGGATCAGCAGGTGGG 59.086 66.667 0.00 0.00 0.00 4.61
168 169 1.997874 GAGGGATCAGCAGGTGGGT 60.998 63.158 0.00 0.00 0.00 4.51
169 170 1.977293 GAGGGATCAGCAGGTGGGTC 61.977 65.000 0.00 0.00 0.00 4.46
170 171 2.592308 GGATCAGCAGGTGGGTCC 59.408 66.667 0.00 4.62 0.00 4.46
171 172 2.592308 GATCAGCAGGTGGGTCCC 59.408 66.667 0.00 0.00 36.75 4.46
172 173 1.997874 GATCAGCAGGTGGGTCCCT 60.998 63.158 10.00 0.00 36.75 4.20
173 174 1.977293 GATCAGCAGGTGGGTCCCTC 61.977 65.000 10.00 5.28 36.75 4.30
174 175 2.483329 ATCAGCAGGTGGGTCCCTCT 62.483 60.000 10.00 3.93 36.75 3.69
175 176 2.608988 AGCAGGTGGGTCCCTCTG 60.609 66.667 20.72 20.72 36.75 3.35
176 177 4.416738 GCAGGTGGGTCCCTCTGC 62.417 72.222 28.52 28.52 41.19 4.26
177 178 2.930019 CAGGTGGGTCCCTCTGCA 60.930 66.667 10.00 0.00 36.75 4.41
178 179 2.608988 AGGTGGGTCCCTCTGCAG 60.609 66.667 7.63 7.63 36.75 4.41
179 180 4.416738 GGTGGGTCCCTCTGCAGC 62.417 72.222 9.47 0.00 0.00 5.25
180 181 3.640407 GTGGGTCCCTCTGCAGCA 61.640 66.667 9.47 0.00 0.00 4.41
181 182 3.640407 TGGGTCCCTCTGCAGCAC 61.640 66.667 9.47 2.61 0.00 4.40
182 183 4.416738 GGGTCCCTCTGCAGCACC 62.417 72.222 9.47 11.70 0.00 5.01
183 184 3.325753 GGTCCCTCTGCAGCACCT 61.326 66.667 9.47 0.00 0.00 4.00
184 185 2.753029 GTCCCTCTGCAGCACCTT 59.247 61.111 9.47 0.00 0.00 3.50
185 186 1.673665 GTCCCTCTGCAGCACCTTG 60.674 63.158 9.47 0.00 0.00 3.61
186 187 2.149383 TCCCTCTGCAGCACCTTGT 61.149 57.895 9.47 0.00 0.00 3.16
187 188 1.673665 CCCTCTGCAGCACCTTGTC 60.674 63.158 9.47 0.00 0.00 3.18
188 189 1.673665 CCTCTGCAGCACCTTGTCC 60.674 63.158 9.47 0.00 0.00 4.02
189 190 1.374190 CTCTGCAGCACCTTGTCCT 59.626 57.895 9.47 0.00 0.00 3.85
190 191 0.673022 CTCTGCAGCACCTTGTCCTC 60.673 60.000 9.47 0.00 0.00 3.71
191 192 1.071987 CTGCAGCACCTTGTCCTCA 59.928 57.895 0.00 0.00 0.00 3.86
192 193 0.322277 CTGCAGCACCTTGTCCTCAT 60.322 55.000 0.00 0.00 0.00 2.90
193 194 0.321919 TGCAGCACCTTGTCCTCATC 60.322 55.000 0.00 0.00 0.00 2.92
194 195 0.035630 GCAGCACCTTGTCCTCATCT 60.036 55.000 0.00 0.00 0.00 2.90
195 196 1.735386 CAGCACCTTGTCCTCATCTG 58.265 55.000 0.00 0.00 0.00 2.90
196 197 1.277273 CAGCACCTTGTCCTCATCTGA 59.723 52.381 0.00 0.00 0.00 3.27
197 198 1.980765 AGCACCTTGTCCTCATCTGAA 59.019 47.619 0.00 0.00 0.00 3.02
198 199 2.027377 AGCACCTTGTCCTCATCTGAAG 60.027 50.000 0.00 0.00 0.00 3.02
199 200 2.289945 GCACCTTGTCCTCATCTGAAGT 60.290 50.000 0.00 0.00 0.00 3.01
200 201 3.332919 CACCTTGTCCTCATCTGAAGTG 58.667 50.000 0.00 0.00 0.00 3.16
201 202 2.304180 ACCTTGTCCTCATCTGAAGTGG 59.696 50.000 0.00 0.00 0.00 4.00
202 203 2.355513 CCTTGTCCTCATCTGAAGTGGG 60.356 54.545 1.68 0.00 0.00 4.61
203 204 2.325661 TGTCCTCATCTGAAGTGGGA 57.674 50.000 1.68 0.00 0.00 4.37
204 205 2.182827 TGTCCTCATCTGAAGTGGGAG 58.817 52.381 1.68 0.00 0.00 4.30
205 206 1.134551 GTCCTCATCTGAAGTGGGAGC 60.135 57.143 1.68 0.00 0.00 4.70
206 207 0.179936 CCTCATCTGAAGTGGGAGCC 59.820 60.000 0.00 0.00 0.00 4.70
207 208 0.179089 CTCATCTGAAGTGGGAGCCG 60.179 60.000 0.00 0.00 0.00 5.52
208 209 1.153289 CATCTGAAGTGGGAGCCGG 60.153 63.158 0.00 0.00 0.00 6.13
209 210 3.036429 ATCTGAAGTGGGAGCCGGC 62.036 63.158 21.89 21.89 0.00 6.13
210 211 3.710722 CTGAAGTGGGAGCCGGCT 61.711 66.667 33.48 33.48 0.00 5.52
211 212 3.965539 CTGAAGTGGGAGCCGGCTG 62.966 68.421 38.41 12.64 0.00 4.85
217 218 4.840005 GGGAGCCGGCTGCAGTAC 62.840 72.222 42.80 25.63 44.83 2.73
219 220 4.436998 GAGCCGGCTGCAGTACGT 62.437 66.667 38.41 6.10 44.83 3.57
220 221 4.436998 AGCCGGCTGCAGTACGTC 62.437 66.667 32.33 16.10 44.83 4.34
221 222 4.436998 GCCGGCTGCAGTACGTCT 62.437 66.667 22.15 0.00 40.77 4.18
222 223 2.202623 CCGGCTGCAGTACGTCTC 60.203 66.667 24.22 4.74 0.00 3.36
223 224 2.577112 CGGCTGCAGTACGTCTCG 60.577 66.667 16.64 4.78 0.00 4.04
224 225 2.567049 GGCTGCAGTACGTCTCGT 59.433 61.111 16.64 0.00 44.35 4.18
225 226 1.801913 GGCTGCAGTACGTCTCGTG 60.802 63.158 16.64 0.00 41.39 4.35
226 227 2.437343 GCTGCAGTACGTCTCGTGC 61.437 63.158 16.64 3.74 41.39 5.34
227 228 1.081442 CTGCAGTACGTCTCGTGCA 60.081 57.895 5.25 11.93 44.29 4.57
228 229 1.337817 CTGCAGTACGTCTCGTGCAC 61.338 60.000 6.82 6.82 44.29 4.57
229 230 2.426183 GCAGTACGTCTCGTGCACG 61.426 63.158 32.76 32.76 44.29 5.34
230 231 2.126965 AGTACGTCTCGTGCACGC 60.127 61.111 33.63 19.01 44.29 5.34
231 232 3.521220 GTACGTCTCGTGCACGCG 61.521 66.667 33.63 30.39 41.70 6.01
232 233 4.746951 TACGTCTCGTGCACGCGG 62.747 66.667 33.63 26.08 41.39 6.46
249 250 4.118584 GCAACTGGGCCTCCAATT 57.881 55.556 4.53 0.00 43.51 2.32
251 252 1.891722 GCAACTGGGCCTCCAATTGG 61.892 60.000 19.08 19.08 46.86 3.16
252 253 0.251742 CAACTGGGCCTCCAATTGGA 60.252 55.000 25.53 25.53 44.10 3.53
253 254 0.712380 AACTGGGCCTCCAATTGGAT 59.288 50.000 27.20 8.17 44.46 3.41
254 255 0.712380 ACTGGGCCTCCAATTGGATT 59.288 50.000 27.20 3.78 44.46 3.01
255 256 1.117150 CTGGGCCTCCAATTGGATTG 58.883 55.000 27.20 20.93 44.46 2.67
263 264 3.719699 CAATTGGATTGGACCGCAC 57.280 52.632 0.00 0.00 36.63 5.34
264 265 0.179166 CAATTGGATTGGACCGCACG 60.179 55.000 0.00 0.00 36.63 5.34
265 266 1.312371 AATTGGATTGGACCGCACGG 61.312 55.000 7.71 7.71 42.03 4.94
278 279 4.722700 CACGGTCCCAAGGGCTGG 62.723 72.222 0.00 0.00 45.97 4.85
282 283 3.971702 GTCCCAAGGGCTGGCACT 61.972 66.667 2.88 0.00 44.90 4.40
283 284 3.970410 TCCCAAGGGCTGGCACTG 61.970 66.667 2.88 0.00 44.90 3.66
292 293 3.181367 CTGGCACTGCACGAATCC 58.819 61.111 2.82 0.00 0.00 3.01
293 294 2.359850 TGGCACTGCACGAATCCC 60.360 61.111 2.82 0.00 0.00 3.85
294 295 2.359850 GGCACTGCACGAATCCCA 60.360 61.111 2.82 0.00 0.00 4.37
295 296 2.690778 GGCACTGCACGAATCCCAC 61.691 63.158 2.82 0.00 0.00 4.61
296 297 3.027170 GCACTGCACGAATCCCACG 62.027 63.158 0.00 0.00 0.00 4.94
297 298 2.047274 ACTGCACGAATCCCACGG 60.047 61.111 0.00 0.00 34.93 4.94
298 299 3.499737 CTGCACGAATCCCACGGC 61.500 66.667 0.00 0.00 34.93 5.68
299 300 4.321966 TGCACGAATCCCACGGCA 62.322 61.111 0.00 0.00 35.76 5.69
300 301 2.824041 GCACGAATCCCACGGCAT 60.824 61.111 0.00 0.00 34.93 4.40
301 302 2.406616 GCACGAATCCCACGGCATT 61.407 57.895 0.00 0.00 34.93 3.56
302 303 1.429021 CACGAATCCCACGGCATTG 59.571 57.895 0.00 0.00 34.93 2.82
303 304 2.406616 ACGAATCCCACGGCATTGC 61.407 57.895 0.00 0.00 34.93 3.56
304 305 2.807622 GAATCCCACGGCATTGCC 59.192 61.111 18.10 18.10 46.75 4.52
317 318 4.421365 TTGCCCATCTGCAACTCC 57.579 55.556 0.00 0.00 45.77 3.85
318 319 1.769665 TTGCCCATCTGCAACTCCT 59.230 52.632 0.00 0.00 45.77 3.69
319 320 0.609957 TTGCCCATCTGCAACTCCTG 60.610 55.000 0.00 0.00 45.77 3.86
320 321 1.001641 GCCCATCTGCAACTCCTGT 60.002 57.895 0.00 0.00 0.00 4.00
321 322 0.610232 GCCCATCTGCAACTCCTGTT 60.610 55.000 0.00 0.00 36.75 3.16
322 323 1.457346 CCCATCTGCAACTCCTGTTC 58.543 55.000 0.00 0.00 33.52 3.18
323 324 1.081892 CCATCTGCAACTCCTGTTCG 58.918 55.000 0.00 0.00 33.52 3.95
324 325 1.081892 CATCTGCAACTCCTGTTCGG 58.918 55.000 0.00 0.00 33.52 4.30
325 326 0.976641 ATCTGCAACTCCTGTTCGGA 59.023 50.000 0.00 0.00 40.30 4.55
326 327 0.976641 TCTGCAACTCCTGTTCGGAT 59.023 50.000 0.00 0.00 42.12 4.18
327 328 1.081892 CTGCAACTCCTGTTCGGATG 58.918 55.000 0.00 0.00 42.12 3.51
328 329 0.321564 TGCAACTCCTGTTCGGATGG 60.322 55.000 0.00 0.00 42.12 3.51
329 330 0.036388 GCAACTCCTGTTCGGATGGA 60.036 55.000 0.00 0.00 42.12 3.41
332 333 1.826024 CTCCTGTTCGGATGGAGGG 59.174 63.158 7.60 0.00 42.12 4.30
333 334 0.687757 CTCCTGTTCGGATGGAGGGA 60.688 60.000 7.60 0.00 42.12 4.20
334 335 0.031111 TCCTGTTCGGATGGAGGGAT 60.031 55.000 0.00 0.00 36.69 3.85
335 336 0.394565 CCTGTTCGGATGGAGGGATC 59.605 60.000 0.00 0.00 33.16 3.36
336 337 1.418334 CTGTTCGGATGGAGGGATCT 58.582 55.000 0.00 0.00 0.00 2.75
337 338 1.069823 CTGTTCGGATGGAGGGATCTG 59.930 57.143 0.00 0.00 0.00 2.90
338 339 0.394565 GTTCGGATGGAGGGATCTGG 59.605 60.000 0.00 0.00 30.65 3.86
339 340 0.031111 TTCGGATGGAGGGATCTGGT 60.031 55.000 0.00 0.00 30.65 4.00
340 341 0.470080 TCGGATGGAGGGATCTGGTC 60.470 60.000 0.00 0.00 30.65 4.02
341 342 0.470833 CGGATGGAGGGATCTGGTCT 60.471 60.000 0.00 0.00 0.00 3.85
342 343 1.347062 GGATGGAGGGATCTGGTCTC 58.653 60.000 0.00 0.00 0.00 3.36
343 344 0.965439 GATGGAGGGATCTGGTCTCG 59.035 60.000 0.00 0.00 30.35 4.04
344 345 0.263172 ATGGAGGGATCTGGTCTCGT 59.737 55.000 0.00 0.00 30.35 4.18
345 346 0.684479 TGGAGGGATCTGGTCTCGTG 60.684 60.000 0.00 0.00 30.35 4.35
346 347 0.684805 GGAGGGATCTGGTCTCGTGT 60.685 60.000 0.00 0.00 30.35 4.49
347 348 0.741915 GAGGGATCTGGTCTCGTGTC 59.258 60.000 0.00 0.00 30.35 3.67
348 349 0.333312 AGGGATCTGGTCTCGTGTCT 59.667 55.000 0.00 0.00 30.35 3.41
349 350 0.741915 GGGATCTGGTCTCGTGTCTC 59.258 60.000 0.00 0.00 0.00 3.36
350 351 0.378962 GGATCTGGTCTCGTGTCTCG 59.621 60.000 0.00 0.00 41.41 4.04
351 352 1.370609 GATCTGGTCTCGTGTCTCGA 58.629 55.000 0.00 0.00 46.83 4.04
358 359 2.827190 TCGTGTCTCGATCCCCGG 60.827 66.667 0.00 0.00 44.01 5.73
359 360 4.570663 CGTGTCTCGATCCCCGGC 62.571 72.222 0.00 0.00 42.86 6.13
360 361 4.222847 GTGTCTCGATCCCCGGCC 62.223 72.222 0.00 0.00 39.14 6.13
363 364 4.789173 TCTCGATCCCCGGCCCAA 62.789 66.667 0.00 0.00 39.14 4.12
364 365 3.560251 CTCGATCCCCGGCCCAAT 61.560 66.667 0.00 0.00 39.14 3.16
365 366 3.537206 CTCGATCCCCGGCCCAATC 62.537 68.421 0.00 0.00 39.14 2.67
366 367 3.872603 CGATCCCCGGCCCAATCA 61.873 66.667 0.00 0.00 33.91 2.57
367 368 2.846532 GATCCCCGGCCCAATCAT 59.153 61.111 0.00 0.00 0.00 2.45
368 369 1.153756 GATCCCCGGCCCAATCATT 59.846 57.895 0.00 0.00 0.00 2.57
369 370 1.152483 ATCCCCGGCCCAATCATTG 60.152 57.895 0.00 0.00 0.00 2.82
389 390 1.539665 AGAGTCGATCTCCCCTCCC 59.460 63.158 10.24 0.00 43.71 4.30
390 391 1.532078 GAGTCGATCTCCCCTCCCC 60.532 68.421 0.00 0.00 37.22 4.81
391 392 2.014033 GAGTCGATCTCCCCTCCCCT 62.014 65.000 0.00 0.00 37.22 4.79
392 393 0.701659 AGTCGATCTCCCCTCCCCTA 60.702 60.000 0.00 0.00 0.00 3.53
393 394 0.251430 GTCGATCTCCCCTCCCCTAG 60.251 65.000 0.00 0.00 0.00 3.02
394 395 1.608046 CGATCTCCCCTCCCCTAGC 60.608 68.421 0.00 0.00 0.00 3.42
395 396 1.549297 GATCTCCCCTCCCCTAGCA 59.451 63.158 0.00 0.00 0.00 3.49
396 397 0.834261 GATCTCCCCTCCCCTAGCAC 60.834 65.000 0.00 0.00 0.00 4.40
397 398 1.307976 ATCTCCCCTCCCCTAGCACT 61.308 60.000 0.00 0.00 0.00 4.40
398 399 1.764054 CTCCCCTCCCCTAGCACTG 60.764 68.421 0.00 0.00 0.00 3.66
399 400 3.483869 CCCCTCCCCTAGCACTGC 61.484 72.222 0.00 0.00 0.00 4.40
400 401 2.688666 CCCTCCCCTAGCACTGCA 60.689 66.667 3.30 0.00 0.00 4.41
401 402 2.074948 CCCTCCCCTAGCACTGCAT 61.075 63.158 3.30 0.00 0.00 3.96
402 403 1.639635 CCCTCCCCTAGCACTGCATT 61.640 60.000 3.30 0.00 0.00 3.56
403 404 0.465097 CCTCCCCTAGCACTGCATTG 60.465 60.000 3.30 0.00 0.00 2.82
404 405 0.465097 CTCCCCTAGCACTGCATTGG 60.465 60.000 6.16 2.15 0.00 3.16
405 406 1.207488 TCCCCTAGCACTGCATTGGT 61.207 55.000 13.53 13.53 0.00 3.67
406 407 0.749454 CCCCTAGCACTGCATTGGTC 60.749 60.000 12.37 0.00 0.00 4.02
407 408 0.749454 CCCTAGCACTGCATTGGTCC 60.749 60.000 12.37 0.00 0.00 4.46
408 409 1.091771 CCTAGCACTGCATTGGTCCG 61.092 60.000 12.37 5.41 0.00 4.79
409 410 1.709147 CTAGCACTGCATTGGTCCGC 61.709 60.000 12.37 0.00 0.00 5.54
410 411 4.120331 GCACTGCATTGGTCCGCC 62.120 66.667 6.16 0.00 0.00 6.13
411 412 2.360350 CACTGCATTGGTCCGCCT 60.360 61.111 0.00 0.00 35.27 5.52
412 413 2.045926 ACTGCATTGGTCCGCCTC 60.046 61.111 0.00 0.00 35.27 4.70
413 414 2.825836 CTGCATTGGTCCGCCTCC 60.826 66.667 0.00 0.00 35.27 4.30
414 415 4.424711 TGCATTGGTCCGCCTCCC 62.425 66.667 0.00 0.00 35.27 4.30
415 416 4.424711 GCATTGGTCCGCCTCCCA 62.425 66.667 0.00 0.00 35.27 4.37
416 417 2.597340 CATTGGTCCGCCTCCCAT 59.403 61.111 0.00 0.00 35.27 4.00
417 418 1.526917 CATTGGTCCGCCTCCCATC 60.527 63.158 0.00 0.00 35.27 3.51
418 419 2.757124 ATTGGTCCGCCTCCCATCC 61.757 63.158 0.00 0.00 35.27 3.51
419 420 4.731853 TGGTCCGCCTCCCATCCA 62.732 66.667 0.00 0.00 35.27 3.41
420 421 3.171388 GGTCCGCCTCCCATCCAT 61.171 66.667 0.00 0.00 0.00 3.41
421 422 2.427753 GTCCGCCTCCCATCCATC 59.572 66.667 0.00 0.00 0.00 3.51
422 423 2.849162 TCCGCCTCCCATCCATCC 60.849 66.667 0.00 0.00 0.00 3.51
423 424 3.170672 CCGCCTCCCATCCATCCA 61.171 66.667 0.00 0.00 0.00 3.41
424 425 2.111878 CGCCTCCCATCCATCCAC 59.888 66.667 0.00 0.00 0.00 4.02
425 426 2.446848 CGCCTCCCATCCATCCACT 61.447 63.158 0.00 0.00 0.00 4.00
426 427 1.925888 GCCTCCCATCCATCCACTT 59.074 57.895 0.00 0.00 0.00 3.16
427 428 0.259938 GCCTCCCATCCATCCACTTT 59.740 55.000 0.00 0.00 0.00 2.66
428 429 2.025863 GCCTCCCATCCATCCACTTTG 61.026 57.143 0.00 0.00 0.00 2.77
429 430 1.410648 CCTCCCATCCATCCACTTTGG 60.411 57.143 0.00 0.00 39.43 3.28
430 431 0.630673 TCCCATCCATCCACTTTGGG 59.369 55.000 0.00 0.00 46.99 4.12
432 433 2.530460 CCATCCATCCACTTTGGGAA 57.470 50.000 0.00 0.00 41.12 3.97
433 434 2.102578 CCATCCATCCACTTTGGGAAC 58.897 52.381 0.00 0.00 41.12 3.62
445 446 2.597510 GGGAACCGCCAAAGCTGT 60.598 61.111 0.00 0.00 40.86 4.40
446 447 2.626780 GGGAACCGCCAAAGCTGTC 61.627 63.158 0.00 0.00 40.86 3.51
447 448 2.556287 GAACCGCCAAAGCTGTCG 59.444 61.111 0.00 0.00 35.10 4.35
448 449 2.203153 AACCGCCAAAGCTGTCGT 60.203 55.556 0.00 0.00 35.10 4.34
449 450 2.171489 GAACCGCCAAAGCTGTCGTC 62.171 60.000 0.00 0.00 35.10 4.20
450 451 3.777925 CCGCCAAAGCTGTCGTCG 61.778 66.667 0.00 0.00 36.60 5.12
451 452 3.777925 CGCCAAAGCTGTCGTCGG 61.778 66.667 0.00 0.00 36.60 4.79
452 453 3.423154 GCCAAAGCTGTCGTCGGG 61.423 66.667 0.00 0.00 35.50 5.14
453 454 3.423154 CCAAAGCTGTCGTCGGGC 61.423 66.667 0.00 0.00 0.00 6.13
454 455 3.423154 CAAAGCTGTCGTCGGGCC 61.423 66.667 0.00 0.00 0.00 5.80
455 456 3.626924 AAAGCTGTCGTCGGGCCT 61.627 61.111 0.84 0.00 0.00 5.19
456 457 3.883744 AAAGCTGTCGTCGGGCCTG 62.884 63.158 4.71 4.71 0.00 4.85
467 468 4.575973 GGGCCTGCCTGCGATGAT 62.576 66.667 8.29 0.00 36.10 2.45
468 469 2.427320 GGCCTGCCTGCGATGATA 59.573 61.111 0.00 0.00 0.00 2.15
469 470 1.227943 GGCCTGCCTGCGATGATAA 60.228 57.895 0.00 0.00 0.00 1.75
470 471 0.819259 GGCCTGCCTGCGATGATAAA 60.819 55.000 0.00 0.00 0.00 1.40
471 472 0.590195 GCCTGCCTGCGATGATAAAG 59.410 55.000 0.00 0.00 0.00 1.85
472 473 0.590195 CCTGCCTGCGATGATAAAGC 59.410 55.000 0.00 0.00 0.00 3.51
473 474 0.234106 CTGCCTGCGATGATAAAGCG 59.766 55.000 0.00 0.00 41.76 4.68
480 481 2.140065 CGATGATAAAGCGCTCTGGA 57.860 50.000 12.06 0.00 0.00 3.86
481 482 2.681706 CGATGATAAAGCGCTCTGGAT 58.318 47.619 12.06 1.02 0.00 3.41
482 483 3.838120 CGATGATAAAGCGCTCTGGATA 58.162 45.455 12.06 0.00 0.00 2.59
483 484 3.610242 CGATGATAAAGCGCTCTGGATAC 59.390 47.826 12.06 0.00 0.00 2.24
484 485 3.013276 TGATAAAGCGCTCTGGATACG 57.987 47.619 12.06 0.00 42.51 3.06
489 490 2.727647 CGCTCTGGATACGCTCGC 60.728 66.667 0.00 0.00 42.51 5.03
490 491 2.413351 GCTCTGGATACGCTCGCA 59.587 61.111 0.00 0.00 42.51 5.10
491 492 1.946650 GCTCTGGATACGCTCGCAC 60.947 63.158 0.00 0.00 42.51 5.34
492 493 1.730487 CTCTGGATACGCTCGCACT 59.270 57.895 0.00 0.00 42.51 4.40
493 494 0.317436 CTCTGGATACGCTCGCACTC 60.317 60.000 0.00 0.00 42.51 3.51
494 495 1.299468 CTGGATACGCTCGCACTCC 60.299 63.158 0.00 0.00 42.51 3.85
495 496 2.353607 GGATACGCTCGCACTCCG 60.354 66.667 0.00 0.00 38.61 4.63
496 497 3.025176 GATACGCTCGCACTCCGC 61.025 66.667 0.00 0.00 36.73 5.54
497 498 4.570663 ATACGCTCGCACTCCGCC 62.571 66.667 0.00 0.00 37.30 6.13
502 503 2.357517 CTCGCACTCCGCCAAGTT 60.358 61.111 0.00 0.00 37.30 2.66
503 504 1.080093 CTCGCACTCCGCCAAGTTA 60.080 57.895 0.00 0.00 37.30 2.24
504 505 1.078759 CTCGCACTCCGCCAAGTTAG 61.079 60.000 0.00 0.00 37.30 2.34
505 506 2.740714 CGCACTCCGCCAAGTTAGC 61.741 63.158 0.00 0.00 37.30 3.09
506 507 1.671054 GCACTCCGCCAAGTTAGCA 60.671 57.895 0.00 0.00 32.94 3.49
507 508 1.026718 GCACTCCGCCAAGTTAGCAT 61.027 55.000 0.00 0.00 32.94 3.79
508 509 1.453155 CACTCCGCCAAGTTAGCATT 58.547 50.000 0.00 0.00 0.00 3.56
509 510 1.131126 CACTCCGCCAAGTTAGCATTG 59.869 52.381 0.00 0.00 0.00 2.82
515 516 1.549203 CCAAGTTAGCATTGGCCACT 58.451 50.000 3.88 1.16 40.74 4.00
516 517 1.895131 CCAAGTTAGCATTGGCCACTT 59.105 47.619 3.88 0.00 42.07 3.16
517 518 2.094545 CCAAGTTAGCATTGGCCACTTC 60.095 50.000 3.88 0.00 40.36 3.01
518 519 1.839424 AGTTAGCATTGGCCACTTCC 58.161 50.000 3.88 0.00 42.56 3.46
519 520 1.355720 AGTTAGCATTGGCCACTTCCT 59.644 47.619 3.88 1.81 42.56 3.36
520 521 1.474077 GTTAGCATTGGCCACTTCCTG 59.526 52.381 3.88 0.00 42.56 3.86
521 522 0.034186 TAGCATTGGCCACTTCCTGG 60.034 55.000 3.88 0.00 44.08 4.45
522 523 1.607467 GCATTGGCCACTTCCTGGT 60.607 57.895 3.88 0.00 42.99 4.00
523 524 1.187567 GCATTGGCCACTTCCTGGTT 61.188 55.000 3.88 0.00 42.99 3.67
524 525 1.341080 CATTGGCCACTTCCTGGTTT 58.659 50.000 3.88 0.00 42.99 3.27
525 526 1.001181 CATTGGCCACTTCCTGGTTTG 59.999 52.381 3.88 0.00 42.99 2.93
526 527 0.260230 TTGGCCACTTCCTGGTTTGA 59.740 50.000 3.88 0.00 42.99 2.69
527 528 0.260230 TGGCCACTTCCTGGTTTGAA 59.740 50.000 0.00 0.00 42.99 2.69
528 529 1.342474 TGGCCACTTCCTGGTTTGAAA 60.342 47.619 0.00 0.00 42.99 2.69
529 530 1.970640 GGCCACTTCCTGGTTTGAAAT 59.029 47.619 0.00 0.00 42.99 2.17
530 531 2.368548 GGCCACTTCCTGGTTTGAAATT 59.631 45.455 0.00 0.00 42.99 1.82
531 532 3.392882 GCCACTTCCTGGTTTGAAATTG 58.607 45.455 0.00 0.00 42.99 2.32
532 533 3.803368 GCCACTTCCTGGTTTGAAATTGG 60.803 47.826 0.00 0.00 42.99 3.16
533 534 3.640967 CCACTTCCTGGTTTGAAATTGGA 59.359 43.478 0.00 0.00 34.90 3.53
534 535 4.100808 CCACTTCCTGGTTTGAAATTGGAA 59.899 41.667 0.00 8.25 34.90 3.53
535 536 5.221702 CCACTTCCTGGTTTGAAATTGGAAT 60.222 40.000 8.76 0.00 34.90 3.01
536 537 5.928264 CACTTCCTGGTTTGAAATTGGAATC 59.072 40.000 8.76 0.00 33.79 2.52
537 538 5.012046 ACTTCCTGGTTTGAAATTGGAATCC 59.988 40.000 8.76 0.00 33.79 3.01
538 539 4.487804 TCCTGGTTTGAAATTGGAATCCA 58.512 39.130 0.00 0.00 0.00 3.41
539 540 4.527816 TCCTGGTTTGAAATTGGAATCCAG 59.472 41.667 0.86 14.57 40.30 3.86
540 541 4.248058 CTGGTTTGAAATTGGAATCCAGC 58.752 43.478 0.86 0.00 35.55 4.85
541 542 3.007831 TGGTTTGAAATTGGAATCCAGCC 59.992 43.478 0.86 0.00 33.81 4.85
542 543 3.007831 GGTTTGAAATTGGAATCCAGCCA 59.992 43.478 0.86 0.00 33.81 4.75
543 544 4.323715 GGTTTGAAATTGGAATCCAGCCAT 60.324 41.667 0.86 0.00 33.81 4.40
544 545 4.475051 TTGAAATTGGAATCCAGCCATG 57.525 40.909 0.86 0.00 33.81 3.66
560 561 4.642488 TGGCCTACCACCGGTCCA 62.642 66.667 2.59 4.93 42.67 4.02
561 562 3.324108 GGCCTACCACCGGTCCAA 61.324 66.667 2.59 0.00 37.09 3.53
562 563 2.676265 GGCCTACCACCGGTCCAAT 61.676 63.158 2.59 0.00 37.09 3.16
563 564 1.339644 GGCCTACCACCGGTCCAATA 61.340 60.000 2.59 0.00 37.09 1.90
564 565 0.763035 GCCTACCACCGGTCCAATAT 59.237 55.000 2.59 0.00 37.09 1.28
565 566 1.142262 GCCTACCACCGGTCCAATATT 59.858 52.381 2.59 0.00 37.09 1.28
566 567 2.846193 CCTACCACCGGTCCAATATTG 58.154 52.381 2.59 8.58 37.09 1.90
567 568 2.436542 CCTACCACCGGTCCAATATTGA 59.563 50.000 17.23 0.46 37.09 2.57
568 569 2.413310 ACCACCGGTCCAATATTGAC 57.587 50.000 17.23 12.12 0.00 3.18
569 570 1.295792 CCACCGGTCCAATATTGACG 58.704 55.000 17.23 16.21 0.00 4.35
570 571 1.134640 CCACCGGTCCAATATTGACGA 60.135 52.381 17.23 3.72 0.00 4.20
571 572 2.623535 CACCGGTCCAATATTGACGAA 58.376 47.619 17.23 0.00 0.00 3.85
572 573 3.202906 CACCGGTCCAATATTGACGAAT 58.797 45.455 17.23 7.33 0.00 3.34
600 601 1.065647 TCATGGGTTTGGGTAACGGA 58.934 50.000 0.00 0.00 37.64 4.69
602 603 0.772384 ATGGGTTTGGGTAACGGACA 59.228 50.000 0.00 0.00 37.64 4.02
618 619 0.035439 GACATTCTTCCCTCCGCCAA 60.035 55.000 0.00 0.00 0.00 4.52
806 812 6.919721 TCCAAAAATGATTAAGAAACTCCCG 58.080 36.000 0.00 0.00 0.00 5.14
808 814 7.666388 TCCAAAAATGATTAAGAAACTCCCGTA 59.334 33.333 0.00 0.00 0.00 4.02
846 853 1.136891 ACGCTGATCATGAATCGGACA 59.863 47.619 0.00 0.00 42.56 4.02
929 936 2.621713 TGGTACACCTCCCACCCA 59.378 61.111 0.00 0.00 36.82 4.51
930 937 1.844289 TGGTACACCTCCCACCCAC 60.844 63.158 0.00 0.00 36.82 4.61
938 945 4.293696 TCCCACCCACCCCATCCA 62.294 66.667 0.00 0.00 0.00 3.41
1081 1088 1.008767 CGGGCGTACTAGCAGCTAC 60.009 63.158 0.00 0.00 39.27 3.58
1202 1209 2.683933 TCCCGCAAGTCCTCCTCC 60.684 66.667 0.00 0.00 0.00 4.30
1275 1282 4.007644 CCAGGACCAGCGAGTGCA 62.008 66.667 0.00 0.00 46.23 4.57
1276 1283 2.031012 CAGGACCAGCGAGTGCAA 59.969 61.111 0.00 0.00 46.23 4.08
1413 1432 1.003839 GGGGACAACGTCATGCAGA 60.004 57.895 0.00 0.00 33.68 4.26
1420 1439 0.933097 AACGTCATGCAGATCGATGC 59.067 50.000 0.54 2.63 46.68 3.91
1457 1476 0.942410 CGGTCACGGTCATTGACGTT 60.942 55.000 10.56 0.00 43.75 3.99
1823 1849 2.139917 CTGGTGCACGCTTGTAGTTAA 58.860 47.619 11.45 0.00 0.00 2.01
1832 1858 4.092383 CACGCTTGTAGTTAAAACGCCTAT 59.908 41.667 0.00 0.00 0.00 2.57
1878 1904 7.605410 TTTTCCAGATGTAGTCGTTATTTCC 57.395 36.000 0.00 0.00 0.00 3.13
1895 1921 5.584551 ATTTCCTCCTTACTTGGTCTGTT 57.415 39.130 0.00 0.00 0.00 3.16
1896 1922 5.382664 TTTCCTCCTTACTTGGTCTGTTT 57.617 39.130 0.00 0.00 0.00 2.83
1897 1923 4.351874 TCCTCCTTACTTGGTCTGTTTG 57.648 45.455 0.00 0.00 0.00 2.93
1898 1924 3.971305 TCCTCCTTACTTGGTCTGTTTGA 59.029 43.478 0.00 0.00 0.00 2.69
1899 1925 4.410883 TCCTCCTTACTTGGTCTGTTTGAA 59.589 41.667 0.00 0.00 0.00 2.69
1900 1926 4.515567 CCTCCTTACTTGGTCTGTTTGAAC 59.484 45.833 0.00 0.00 0.00 3.18
1901 1927 4.457466 TCCTTACTTGGTCTGTTTGAACC 58.543 43.478 0.00 0.00 0.00 3.62
1902 1928 4.165372 TCCTTACTTGGTCTGTTTGAACCT 59.835 41.667 0.00 0.00 0.00 3.50
1903 1929 4.515567 CCTTACTTGGTCTGTTTGAACCTC 59.484 45.833 0.00 0.00 0.00 3.85
1904 1930 2.561569 ACTTGGTCTGTTTGAACCTCG 58.438 47.619 0.00 0.00 0.00 4.63
1905 1931 2.093128 ACTTGGTCTGTTTGAACCTCGT 60.093 45.455 0.00 0.00 0.00 4.18
1906 1932 2.234300 TGGTCTGTTTGAACCTCGTC 57.766 50.000 0.00 0.00 0.00 4.20
1907 1933 1.760613 TGGTCTGTTTGAACCTCGTCT 59.239 47.619 0.00 0.00 0.00 4.18
1908 1934 2.223971 TGGTCTGTTTGAACCTCGTCTC 60.224 50.000 0.00 0.00 0.00 3.36
1909 1935 2.223971 GGTCTGTTTGAACCTCGTCTCA 60.224 50.000 0.00 0.00 0.00 3.27
1910 1936 2.795470 GTCTGTTTGAACCTCGTCTCAC 59.205 50.000 0.00 0.00 0.00 3.51
1911 1937 2.429250 TCTGTTTGAACCTCGTCTCACA 59.571 45.455 0.00 0.00 0.00 3.58
1912 1938 2.540101 CTGTTTGAACCTCGTCTCACAC 59.460 50.000 0.00 0.00 0.00 3.82
1913 1939 1.865340 GTTTGAACCTCGTCTCACACC 59.135 52.381 0.00 0.00 0.00 4.16
1914 1940 1.116308 TTGAACCTCGTCTCACACCA 58.884 50.000 0.00 0.00 0.00 4.17
1915 1941 1.116308 TGAACCTCGTCTCACACCAA 58.884 50.000 0.00 0.00 0.00 3.67
1916 1942 1.483004 TGAACCTCGTCTCACACCAAA 59.517 47.619 0.00 0.00 0.00 3.28
1917 1943 1.865340 GAACCTCGTCTCACACCAAAC 59.135 52.381 0.00 0.00 0.00 2.93
1918 1944 0.106149 ACCTCGTCTCACACCAAACC 59.894 55.000 0.00 0.00 0.00 3.27
1919 1945 0.105964 CCTCGTCTCACACCAAACCA 59.894 55.000 0.00 0.00 0.00 3.67
1920 1946 1.474320 CCTCGTCTCACACCAAACCAA 60.474 52.381 0.00 0.00 0.00 3.67
1921 1947 2.285083 CTCGTCTCACACCAAACCAAA 58.715 47.619 0.00 0.00 0.00 3.28
1922 1948 2.878406 CTCGTCTCACACCAAACCAAAT 59.122 45.455 0.00 0.00 0.00 2.32
1923 1949 4.062293 CTCGTCTCACACCAAACCAAATA 58.938 43.478 0.00 0.00 0.00 1.40
2027 2086 2.243736 AGGTGTTTGGTTCAGGAAAGGA 59.756 45.455 0.00 0.00 0.00 3.36
2226 2630 2.426024 CTGAATCGAACCCTAACCTCGA 59.574 50.000 0.00 0.00 44.87 4.04
2232 2636 2.093869 CGAACCCTAACCTCGAAATCCA 60.094 50.000 0.00 0.00 34.52 3.41
2244 2648 4.272018 CCTCGAAATCCATGAAACTGCTAG 59.728 45.833 0.00 0.00 0.00 3.42
2245 2649 3.623060 TCGAAATCCATGAAACTGCTAGC 59.377 43.478 8.10 8.10 0.00 3.42
2247 2651 4.036027 CGAAATCCATGAAACTGCTAGCAT 59.964 41.667 19.72 2.78 0.00 3.79
2248 2652 4.913335 AATCCATGAAACTGCTAGCATG 57.087 40.909 19.72 12.28 38.22 4.06
2350 2761 1.453155 GTGGAAATCAGACGCCATGT 58.547 50.000 0.00 0.00 32.26 3.21
2596 3007 1.949465 ATAAAACTAGGCTTCGCGGG 58.051 50.000 6.13 0.11 0.00 6.13
2597 3008 0.609662 TAAAACTAGGCTTCGCGGGT 59.390 50.000 6.13 0.00 0.00 5.28
2618 3671 3.451178 GTGGCTACAATTAGTGGAGGAGA 59.549 47.826 0.00 0.00 38.83 3.71
2655 3709 1.808133 GCGGCAACTATTGGAGGAGAG 60.808 57.143 0.00 0.00 0.00 3.20
2720 4842 2.435693 ATACTCTGGCGGAGGGTGC 61.436 63.158 26.25 0.00 45.83 5.01
2733 4855 2.747855 GGTGCGGCCAAAGGAGAG 60.748 66.667 2.24 0.00 37.17 3.20
2758 4880 4.408821 GAGGTCGCATGTGCCCCA 62.409 66.667 1.98 0.00 37.91 4.96
2809 4931 4.686554 GGTGAAAGAGTGCTACTACAACAG 59.313 45.833 0.00 0.00 0.00 3.16
2811 4933 3.320673 AAGAGTGCTACTACAACAGGC 57.679 47.619 0.00 0.00 0.00 4.85
2829 4951 2.093128 AGGCGTTGGGAAATGTAGTAGG 60.093 50.000 0.00 0.00 0.00 3.18
2835 4957 6.376177 CGTTGGGAAATGTAGTAGGAAAAAC 58.624 40.000 0.00 0.00 0.00 2.43
2836 4958 6.016943 CGTTGGGAAATGTAGTAGGAAAAACA 60.017 38.462 0.00 0.00 0.00 2.83
2854 4976 5.878406 AAACATCCTTCGTCCTATGATCT 57.122 39.130 0.00 0.00 0.00 2.75
2861 4983 4.522405 CCTTCGTCCTATGATCTCATCACT 59.478 45.833 0.00 0.00 43.01 3.41
2862 4984 5.707764 CCTTCGTCCTATGATCTCATCACTA 59.292 44.000 0.00 0.00 43.01 2.74
2901 5024 5.453567 ACTGTATTGCTTTCTCCAAAACC 57.546 39.130 0.00 0.00 0.00 3.27
2905 5029 4.751767 ATTGCTTTCTCCAAAACCAACA 57.248 36.364 0.00 0.00 0.00 3.33
2922 5046 3.433173 CCAACATAGCCTACACTTACCCC 60.433 52.174 0.00 0.00 0.00 4.95
2942 5066 3.464907 CCAGATGCATGAACTAGGTCTG 58.535 50.000 2.46 2.13 33.29 3.51
3003 5127 2.300956 TTGACCCTTATGGCTGCAAA 57.699 45.000 0.50 0.00 37.83 3.68
3048 5172 0.032130 ACGAGTGAGTGATGCAACGT 59.968 50.000 0.00 0.00 0.00 3.99
3051 5175 2.263077 GAGTGAGTGATGCAACGTAGG 58.737 52.381 0.00 0.00 0.00 3.18
3057 5181 2.300723 AGTGATGCAACGTAGGGTTACA 59.699 45.455 0.00 0.00 36.49 2.41
3060 5184 4.155280 GTGATGCAACGTAGGGTTACAATT 59.845 41.667 0.00 0.00 35.60 2.32
3070 5194 7.212274 ACGTAGGGTTACAATTATGTCCATAC 58.788 38.462 0.00 0.00 41.05 2.39
3123 5247 9.095065 GTCATTAAGATATTGACGTTTACCACT 57.905 33.333 0.00 0.00 31.83 4.00
3182 5306 7.230712 AGGTATACAATGTATTAAAGCCTTGGC 59.769 37.037 11.47 2.97 0.00 4.52
3183 5307 7.013846 GGTATACAATGTATTAAAGCCTTGGCA 59.986 37.037 11.47 0.00 0.00 4.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.012113 GGATGATATCCCACATGAAAATGGA 58.988 40.000 0.00 0.00 43.88 3.41
1 2 6.276832 GGATGATATCCCACATGAAAATGG 57.723 41.667 0.00 0.00 43.88 3.16
15 16 4.692155 TCATCGTTGCATGTGGATGATATC 59.308 41.667 12.61 0.00 40.07 1.63
16 17 4.644498 TCATCGTTGCATGTGGATGATAT 58.356 39.130 12.61 0.00 40.07 1.63
17 18 4.070630 TCATCGTTGCATGTGGATGATA 57.929 40.909 12.61 0.00 40.07 2.15
18 19 2.921821 TCATCGTTGCATGTGGATGAT 58.078 42.857 12.61 0.98 40.07 2.45
19 20 2.399916 TCATCGTTGCATGTGGATGA 57.600 45.000 12.61 12.61 42.02 2.92
20 21 2.356695 ACATCATCGTTGCATGTGGATG 59.643 45.455 11.83 11.83 38.06 3.51
21 22 2.356695 CACATCATCGTTGCATGTGGAT 59.643 45.455 20.02 0.00 42.47 3.41
22 23 1.738908 CACATCATCGTTGCATGTGGA 59.261 47.619 20.02 0.00 42.47 4.02
23 24 1.738908 TCACATCATCGTTGCATGTGG 59.261 47.619 23.57 13.90 45.05 4.17
24 25 2.160022 TGTCACATCATCGTTGCATGTG 59.840 45.455 20.89 20.89 45.93 3.21
25 26 2.160219 GTGTCACATCATCGTTGCATGT 59.840 45.455 0.00 6.02 0.00 3.21
26 27 2.476686 GGTGTCACATCATCGTTGCATG 60.477 50.000 5.12 0.00 0.00 4.06
27 28 1.739466 GGTGTCACATCATCGTTGCAT 59.261 47.619 5.12 0.00 0.00 3.96
28 29 1.155889 GGTGTCACATCATCGTTGCA 58.844 50.000 5.12 0.00 0.00 4.08
29 30 0.447801 GGGTGTCACATCATCGTTGC 59.552 55.000 5.12 0.00 0.00 4.17
30 31 1.464608 GTGGGTGTCACATCATCGTTG 59.535 52.381 5.12 0.00 45.39 4.10
31 32 1.808411 GTGGGTGTCACATCATCGTT 58.192 50.000 5.12 0.00 45.39 3.85
32 33 0.389817 CGTGGGTGTCACATCATCGT 60.390 55.000 5.12 0.00 46.36 3.73
33 34 0.389817 ACGTGGGTGTCACATCATCG 60.390 55.000 5.12 10.68 46.36 3.84
34 35 1.359848 GACGTGGGTGTCACATCATC 58.640 55.000 5.12 0.00 46.36 2.92
35 36 0.036388 GGACGTGGGTGTCACATCAT 60.036 55.000 5.12 0.00 46.36 2.45
36 37 1.369692 GGACGTGGGTGTCACATCA 59.630 57.895 5.12 0.00 46.36 3.07
37 38 1.375523 GGGACGTGGGTGTCACATC 60.376 63.158 5.12 0.00 46.36 3.06
38 39 2.747686 GGGACGTGGGTGTCACAT 59.252 61.111 5.12 0.00 46.36 3.21
51 52 3.112205 ATGCATGGAGGAGCGGGAC 62.112 63.158 0.00 0.00 0.00 4.46
52 53 2.769621 ATGCATGGAGGAGCGGGA 60.770 61.111 0.00 0.00 0.00 5.14
53 54 2.593725 CATGCATGGAGGAGCGGG 60.594 66.667 19.40 0.00 0.00 6.13
54 55 3.285215 GCATGCATGGAGGAGCGG 61.285 66.667 27.34 0.00 0.00 5.52
55 56 1.897137 ATGCATGCATGGAGGAGCG 60.897 57.895 31.74 0.11 35.03 5.03
56 57 4.175988 ATGCATGCATGGAGGAGC 57.824 55.556 31.74 12.83 35.03 4.70
67 68 4.880899 CACTGGTGTGCATGCATG 57.119 55.556 25.64 22.70 37.38 4.06
75 76 1.900016 ACCTGCATGCACTGGTGTG 60.900 57.895 26.08 11.65 46.37 3.82
76 77 2.517414 ACCTGCATGCACTGGTGT 59.483 55.556 26.08 12.18 40.07 4.16
78 79 2.282674 CCACCTGCATGCACTGGT 60.283 61.111 22.43 22.43 42.07 4.00
79 80 3.066190 CCCACCTGCATGCACTGG 61.066 66.667 24.42 24.42 34.95 4.00
80 81 3.755628 GCCCACCTGCATGCACTG 61.756 66.667 18.46 14.54 0.00 3.66
85 86 2.982643 TACCTGGCCCACCTGCATG 61.983 63.158 0.00 0.00 36.63 4.06
86 87 2.613696 TACCTGGCCCACCTGCAT 60.614 61.111 0.00 0.00 36.63 3.96
87 88 3.646715 GTACCTGGCCCACCTGCA 61.647 66.667 0.00 0.00 36.63 4.41
88 89 4.426313 GGTACCTGGCCCACCTGC 62.426 72.222 4.06 0.00 36.63 4.85
89 90 2.534396 TTGGTACCTGGCCCACCTG 61.534 63.158 14.36 0.00 36.63 4.00
90 91 2.121689 TTGGTACCTGGCCCACCT 60.122 61.111 14.36 0.00 36.63 4.00
91 92 2.035155 GTTGGTACCTGGCCCACC 59.965 66.667 14.36 2.83 0.00 4.61
92 93 2.359478 CGTTGGTACCTGGCCCAC 60.359 66.667 14.36 0.00 0.00 4.61
93 94 3.642503 CCGTTGGTACCTGGCCCA 61.643 66.667 14.36 1.74 0.00 5.36
94 95 4.419921 CCCGTTGGTACCTGGCCC 62.420 72.222 14.36 0.00 0.00 5.80
95 96 4.419921 CCCCGTTGGTACCTGGCC 62.420 72.222 14.36 0.00 0.00 5.36
96 97 4.419921 CCCCCGTTGGTACCTGGC 62.420 72.222 14.36 2.22 0.00 4.85
113 114 1.381851 GGATGGGGATCATGCCTCC 59.618 63.158 0.00 5.76 38.13 4.30
114 115 1.002868 CGGATGGGGATCATGCCTC 60.003 63.158 0.00 0.00 40.56 4.70
115 116 3.164479 CGGATGGGGATCATGCCT 58.836 61.111 0.00 0.00 40.56 4.75
116 117 2.674380 GCGGATGGGGATCATGCC 60.674 66.667 0.00 0.00 40.56 4.40
117 118 2.113774 TGCGGATGGGGATCATGC 59.886 61.111 0.00 0.00 40.30 4.06
118 119 0.251033 ATGTGCGGATGGGGATCATG 60.251 55.000 0.00 0.00 35.97 3.07
119 120 0.037303 GATGTGCGGATGGGGATCAT 59.963 55.000 0.00 0.00 39.13 2.45
120 121 1.451504 GATGTGCGGATGGGGATCA 59.548 57.895 0.00 0.00 0.00 2.92
121 122 1.302832 GGATGTGCGGATGGGGATC 60.303 63.158 0.00 0.00 0.00 3.36
122 123 2.833913 GGGATGTGCGGATGGGGAT 61.834 63.158 0.00 0.00 0.00 3.85
123 124 3.488569 GGGATGTGCGGATGGGGA 61.489 66.667 0.00 0.00 0.00 4.81
124 125 4.935495 CGGGATGTGCGGATGGGG 62.935 72.222 0.00 0.00 0.00 4.96
127 128 4.854924 TGGCGGGATGTGCGGATG 62.855 66.667 0.00 0.00 0.00 3.51
128 129 4.108299 TTGGCGGGATGTGCGGAT 62.108 61.111 0.00 0.00 0.00 4.18
131 132 4.101790 GTGTTGGCGGGATGTGCG 62.102 66.667 0.00 0.00 0.00 5.34
132 133 3.747976 GGTGTTGGCGGGATGTGC 61.748 66.667 0.00 0.00 0.00 4.57
133 134 3.430862 CGGTGTTGGCGGGATGTG 61.431 66.667 0.00 0.00 0.00 3.21
134 135 3.605749 CTCGGTGTTGGCGGGATGT 62.606 63.158 0.00 0.00 0.00 3.06
135 136 2.819595 CTCGGTGTTGGCGGGATG 60.820 66.667 0.00 0.00 0.00 3.51
136 137 4.096003 CCTCGGTGTTGGCGGGAT 62.096 66.667 0.00 0.00 0.00 3.85
139 140 4.096003 ATCCCTCGGTGTTGGCGG 62.096 66.667 0.00 0.00 0.00 6.13
140 141 2.511600 GATCCCTCGGTGTTGGCG 60.512 66.667 0.00 0.00 0.00 5.69
141 142 1.450312 CTGATCCCTCGGTGTTGGC 60.450 63.158 0.00 0.00 0.00 4.52
142 143 1.450312 GCTGATCCCTCGGTGTTGG 60.450 63.158 0.00 0.00 0.00 3.77
143 144 0.742281 CTGCTGATCCCTCGGTGTTG 60.742 60.000 0.00 0.00 0.00 3.33
144 145 1.599047 CTGCTGATCCCTCGGTGTT 59.401 57.895 0.00 0.00 0.00 3.32
145 146 2.362369 CCTGCTGATCCCTCGGTGT 61.362 63.158 0.00 0.00 0.00 4.16
146 147 2.362369 ACCTGCTGATCCCTCGGTG 61.362 63.158 0.00 0.00 0.00 4.94
147 148 2.039624 ACCTGCTGATCCCTCGGT 59.960 61.111 0.00 0.00 0.00 4.69
148 149 2.503061 CACCTGCTGATCCCTCGG 59.497 66.667 0.00 0.00 0.00 4.63
149 150 2.503061 CCACCTGCTGATCCCTCG 59.497 66.667 0.00 0.00 0.00 4.63
150 151 1.977293 GACCCACCTGCTGATCCCTC 61.977 65.000 0.00 0.00 0.00 4.30
151 152 1.997874 GACCCACCTGCTGATCCCT 60.998 63.158 0.00 0.00 0.00 4.20
152 153 2.592308 GACCCACCTGCTGATCCC 59.408 66.667 0.00 0.00 0.00 3.85
153 154 2.592308 GGACCCACCTGCTGATCC 59.408 66.667 0.00 0.00 35.41 3.36
154 155 1.977293 GAGGGACCCACCTGCTGATC 61.977 65.000 14.60 0.00 42.10 2.92
155 156 1.997874 GAGGGACCCACCTGCTGAT 60.998 63.158 14.60 0.00 42.10 2.90
156 157 2.607750 GAGGGACCCACCTGCTGA 60.608 66.667 14.60 0.00 42.10 4.26
157 158 2.608988 AGAGGGACCCACCTGCTG 60.609 66.667 14.60 0.00 42.10 4.41
158 159 2.608988 CAGAGGGACCCACCTGCT 60.609 66.667 14.60 0.00 42.10 4.24
159 160 4.416738 GCAGAGGGACCCACCTGC 62.417 72.222 30.09 30.09 42.10 4.85
160 161 2.930019 TGCAGAGGGACCCACCTG 60.930 66.667 22.07 22.07 42.10 4.00
161 162 2.608988 CTGCAGAGGGACCCACCT 60.609 66.667 14.60 6.46 45.57 4.00
162 163 4.416738 GCTGCAGAGGGACCCACC 62.417 72.222 20.43 3.84 38.08 4.61
163 164 3.640407 TGCTGCAGAGGGACCCAC 61.640 66.667 20.43 6.57 0.00 4.61
164 165 3.640407 GTGCTGCAGAGGGACCCA 61.640 66.667 20.43 0.00 0.00 4.51
165 166 4.416738 GGTGCTGCAGAGGGACCC 62.417 72.222 20.43 0.59 38.90 4.46
166 167 2.900106 AAGGTGCTGCAGAGGGACC 61.900 63.158 20.43 16.29 43.97 4.46
167 168 1.673665 CAAGGTGCTGCAGAGGGAC 60.674 63.158 20.43 7.47 0.00 4.46
168 169 2.116983 GACAAGGTGCTGCAGAGGGA 62.117 60.000 20.43 0.00 0.00 4.20
169 170 1.673665 GACAAGGTGCTGCAGAGGG 60.674 63.158 20.43 2.22 0.00 4.30
170 171 1.673665 GGACAAGGTGCTGCAGAGG 60.674 63.158 20.43 1.46 0.00 3.69
171 172 0.673022 GAGGACAAGGTGCTGCAGAG 60.673 60.000 20.43 1.49 33.56 3.35
172 173 1.372683 GAGGACAAGGTGCTGCAGA 59.627 57.895 20.43 0.00 33.56 4.26
173 174 0.322277 ATGAGGACAAGGTGCTGCAG 60.322 55.000 10.11 10.11 33.56 4.41
174 175 0.321919 GATGAGGACAAGGTGCTGCA 60.322 55.000 0.00 0.00 33.56 4.41
175 176 0.035630 AGATGAGGACAAGGTGCTGC 60.036 55.000 0.00 0.00 33.56 5.25
176 177 1.277273 TCAGATGAGGACAAGGTGCTG 59.723 52.381 0.00 0.00 33.56 4.41
177 178 1.649321 TCAGATGAGGACAAGGTGCT 58.351 50.000 0.00 0.00 36.81 4.40
178 179 2.289945 ACTTCAGATGAGGACAAGGTGC 60.290 50.000 0.00 0.00 0.00 5.01
179 180 3.332919 CACTTCAGATGAGGACAAGGTG 58.667 50.000 0.00 0.00 0.00 4.00
180 181 2.304180 CCACTTCAGATGAGGACAAGGT 59.696 50.000 0.00 0.00 0.00 3.50
181 182 2.355513 CCCACTTCAGATGAGGACAAGG 60.356 54.545 0.00 0.00 0.00 3.61
182 183 2.568956 TCCCACTTCAGATGAGGACAAG 59.431 50.000 0.00 0.00 0.00 3.16
183 184 2.568956 CTCCCACTTCAGATGAGGACAA 59.431 50.000 0.00 0.00 0.00 3.18
184 185 2.182827 CTCCCACTTCAGATGAGGACA 58.817 52.381 0.00 0.00 0.00 4.02
185 186 1.134551 GCTCCCACTTCAGATGAGGAC 60.135 57.143 0.00 0.00 0.00 3.85
186 187 1.198713 GCTCCCACTTCAGATGAGGA 58.801 55.000 0.00 1.69 0.00 3.71
187 188 0.179936 GGCTCCCACTTCAGATGAGG 59.820 60.000 0.00 0.00 0.00 3.86
188 189 0.179089 CGGCTCCCACTTCAGATGAG 60.179 60.000 0.00 0.00 0.00 2.90
189 190 1.617018 CCGGCTCCCACTTCAGATGA 61.617 60.000 0.00 0.00 0.00 2.92
190 191 1.153289 CCGGCTCCCACTTCAGATG 60.153 63.158 0.00 0.00 0.00 2.90
191 192 3.036429 GCCGGCTCCCACTTCAGAT 62.036 63.158 22.15 0.00 0.00 2.90
192 193 3.706373 GCCGGCTCCCACTTCAGA 61.706 66.667 22.15 0.00 0.00 3.27
193 194 3.710722 AGCCGGCTCCCACTTCAG 61.711 66.667 27.08 0.00 0.00 3.02
194 195 4.020617 CAGCCGGCTCCCACTTCA 62.021 66.667 30.29 0.00 0.00 3.02
200 201 4.840005 GTACTGCAGCCGGCTCCC 62.840 72.222 30.29 21.31 45.15 4.30
202 203 4.436998 ACGTACTGCAGCCGGCTC 62.437 66.667 30.29 21.68 45.15 4.70
203 204 4.436998 GACGTACTGCAGCCGGCT 62.437 66.667 27.08 27.08 45.15 5.52
204 205 4.436998 AGACGTACTGCAGCCGGC 62.437 66.667 21.89 21.89 45.13 6.13
205 206 2.202623 GAGACGTACTGCAGCCGG 60.203 66.667 24.68 12.77 0.00 6.13
206 207 2.577112 CGAGACGTACTGCAGCCG 60.577 66.667 20.92 20.92 0.00 5.52
207 208 1.801913 CACGAGACGTACTGCAGCC 60.802 63.158 15.27 3.46 38.32 4.85
208 209 2.437343 GCACGAGACGTACTGCAGC 61.437 63.158 15.27 0.00 38.32 5.25
209 210 1.081442 TGCACGAGACGTACTGCAG 60.081 57.895 13.48 13.48 38.32 4.41
210 211 1.371267 GTGCACGAGACGTACTGCA 60.371 57.895 0.00 1.42 38.32 4.41
211 212 2.426183 CGTGCACGAGACGTACTGC 61.426 63.158 34.93 0.00 43.02 4.40
212 213 2.426183 GCGTGCACGAGACGTACTG 61.426 63.158 41.19 10.08 43.02 2.74
213 214 2.126965 GCGTGCACGAGACGTACT 60.127 61.111 41.19 0.00 43.02 2.73
214 215 3.521220 CGCGTGCACGAGACGTAC 61.521 66.667 41.19 20.75 41.67 3.67
215 216 4.746951 CCGCGTGCACGAGACGTA 62.747 66.667 41.19 0.00 41.67 3.57
232 233 4.118584 AATTGGAGGCCCAGTTGC 57.881 55.556 0.00 0.00 44.60 4.17
234 235 2.172900 TCCAATTGGAGGCCCAGTT 58.827 52.632 23.63 0.00 44.60 3.16
235 236 3.936408 TCCAATTGGAGGCCCAGT 58.064 55.556 23.63 0.00 44.60 4.00
245 246 0.179166 CGTGCGGTCCAATCCAATTG 60.179 55.000 0.00 0.00 39.94 2.32
246 247 1.312371 CCGTGCGGTCCAATCCAATT 61.312 55.000 1.93 0.00 0.00 2.32
247 248 1.748879 CCGTGCGGTCCAATCCAAT 60.749 57.895 1.93 0.00 0.00 3.16
248 249 2.359354 CCGTGCGGTCCAATCCAA 60.359 61.111 1.93 0.00 0.00 3.53
261 262 4.722700 CCAGCCCTTGGGACCGTG 62.723 72.222 10.36 0.78 43.75 4.94
269 270 3.677648 GTGCAGTGCCAGCCCTTG 61.678 66.667 13.72 0.00 0.00 3.61
273 274 3.044059 GATTCGTGCAGTGCCAGCC 62.044 63.158 13.72 0.00 0.00 4.85
274 275 2.482374 GATTCGTGCAGTGCCAGC 59.518 61.111 13.72 1.88 0.00 4.85
275 276 2.401766 GGGATTCGTGCAGTGCCAG 61.402 63.158 13.72 6.62 0.00 4.85
276 277 2.359850 GGGATTCGTGCAGTGCCA 60.360 61.111 13.72 0.00 0.00 4.92
277 278 2.359850 TGGGATTCGTGCAGTGCC 60.360 61.111 13.72 2.92 0.00 5.01
278 279 2.870372 GTGGGATTCGTGCAGTGC 59.130 61.111 8.58 8.58 0.00 4.40
279 280 2.390599 CCGTGGGATTCGTGCAGTG 61.391 63.158 0.00 0.00 0.00 3.66
280 281 2.047274 CCGTGGGATTCGTGCAGT 60.047 61.111 0.00 0.00 0.00 4.40
281 282 3.499737 GCCGTGGGATTCGTGCAG 61.500 66.667 0.00 0.00 0.00 4.41
282 283 3.620419 ATGCCGTGGGATTCGTGCA 62.620 57.895 0.00 0.00 38.21 4.57
283 284 2.406616 AATGCCGTGGGATTCGTGC 61.407 57.895 0.00 0.00 30.31 5.34
284 285 1.429021 CAATGCCGTGGGATTCGTG 59.571 57.895 2.29 0.00 33.94 4.35
285 286 2.406616 GCAATGCCGTGGGATTCGT 61.407 57.895 2.29 0.00 33.94 3.85
286 287 2.408835 GCAATGCCGTGGGATTCG 59.591 61.111 2.29 1.24 33.94 3.34
287 288 2.807622 GGCAATGCCGTGGGATTC 59.192 61.111 9.14 0.00 39.62 2.52
301 302 1.001764 CAGGAGTTGCAGATGGGCA 60.002 57.895 0.00 0.00 43.19 5.36
302 303 0.610232 AACAGGAGTTGCAGATGGGC 60.610 55.000 0.00 0.00 36.39 5.36
303 304 1.457346 GAACAGGAGTTGCAGATGGG 58.543 55.000 0.00 0.00 38.30 4.00
304 305 1.081892 CGAACAGGAGTTGCAGATGG 58.918 55.000 0.00 0.00 38.30 3.51
305 306 1.081892 CCGAACAGGAGTTGCAGATG 58.918 55.000 0.00 0.00 45.00 2.90
306 307 0.976641 TCCGAACAGGAGTTGCAGAT 59.023 50.000 0.00 0.00 45.98 2.90
307 308 2.436521 TCCGAACAGGAGTTGCAGA 58.563 52.632 0.00 0.00 45.98 4.26
316 317 0.394565 GATCCCTCCATCCGAACAGG 59.605 60.000 0.00 0.00 42.97 4.00
317 318 1.069823 CAGATCCCTCCATCCGAACAG 59.930 57.143 0.00 0.00 0.00 3.16
318 319 1.123077 CAGATCCCTCCATCCGAACA 58.877 55.000 0.00 0.00 0.00 3.18
319 320 0.394565 CCAGATCCCTCCATCCGAAC 59.605 60.000 0.00 0.00 0.00 3.95
320 321 0.031111 ACCAGATCCCTCCATCCGAA 60.031 55.000 0.00 0.00 0.00 4.30
321 322 0.470080 GACCAGATCCCTCCATCCGA 60.470 60.000 0.00 0.00 0.00 4.55
322 323 0.470833 AGACCAGATCCCTCCATCCG 60.471 60.000 0.00 0.00 0.00 4.18
323 324 1.347062 GAGACCAGATCCCTCCATCC 58.653 60.000 0.00 0.00 0.00 3.51
324 325 0.965439 CGAGACCAGATCCCTCCATC 59.035 60.000 0.00 0.00 0.00 3.51
325 326 0.263172 ACGAGACCAGATCCCTCCAT 59.737 55.000 0.00 0.00 0.00 3.41
326 327 0.684479 CACGAGACCAGATCCCTCCA 60.684 60.000 0.00 0.00 0.00 3.86
327 328 0.684805 ACACGAGACCAGATCCCTCC 60.685 60.000 0.00 0.00 0.00 4.30
328 329 0.741915 GACACGAGACCAGATCCCTC 59.258 60.000 0.00 0.00 0.00 4.30
329 330 0.333312 AGACACGAGACCAGATCCCT 59.667 55.000 0.00 0.00 0.00 4.20
330 331 0.741915 GAGACACGAGACCAGATCCC 59.258 60.000 0.00 0.00 0.00 3.85
331 332 0.378962 CGAGACACGAGACCAGATCC 59.621 60.000 0.00 0.00 45.77 3.36
332 333 1.370609 TCGAGACACGAGACCAGATC 58.629 55.000 0.00 0.00 46.45 2.75
333 334 3.553109 TCGAGACACGAGACCAGAT 57.447 52.632 0.00 0.00 46.45 2.90
342 343 4.570663 GCCGGGGATCGAGACACG 62.571 72.222 2.18 6.79 42.43 4.49
343 344 4.222847 GGCCGGGGATCGAGACAC 62.223 72.222 2.18 0.00 42.43 3.67
346 347 4.789173 TTGGGCCGGGGATCGAGA 62.789 66.667 2.18 0.00 42.43 4.04
347 348 3.537206 GATTGGGCCGGGGATCGAG 62.537 68.421 2.18 0.00 42.43 4.04
348 349 3.556306 GATTGGGCCGGGGATCGA 61.556 66.667 2.18 0.00 42.43 3.59
349 350 2.697147 AATGATTGGGCCGGGGATCG 62.697 60.000 2.18 0.00 38.88 3.69
350 351 1.153756 AATGATTGGGCCGGGGATC 59.846 57.895 2.18 0.46 0.00 3.36
351 352 1.152483 CAATGATTGGGCCGGGGAT 60.152 57.895 2.18 0.00 0.00 3.85
352 353 2.278404 CAATGATTGGGCCGGGGA 59.722 61.111 2.18 0.00 0.00 4.81
359 360 4.798924 GAGATCGACTCTCCAATGATTGGG 60.799 50.000 23.03 14.05 44.06 4.12
360 361 4.305769 GAGATCGACTCTCCAATGATTGG 58.694 47.826 18.02 18.02 44.06 3.16
371 372 1.539665 GGGAGGGGAGATCGACTCT 59.460 63.158 12.62 6.14 44.37 3.24
372 373 1.532078 GGGGAGGGGAGATCGACTC 60.532 68.421 6.50 6.50 44.24 3.36
373 374 0.701659 TAGGGGAGGGGAGATCGACT 60.702 60.000 0.00 0.00 0.00 4.18
374 375 0.251430 CTAGGGGAGGGGAGATCGAC 60.251 65.000 0.00 0.00 0.00 4.20
375 376 2.082836 GCTAGGGGAGGGGAGATCGA 62.083 65.000 0.00 0.00 0.00 3.59
376 377 1.608046 GCTAGGGGAGGGGAGATCG 60.608 68.421 0.00 0.00 0.00 3.69
377 378 0.834261 GTGCTAGGGGAGGGGAGATC 60.834 65.000 0.00 0.00 0.00 2.75
378 379 1.237458 GTGCTAGGGGAGGGGAGAT 59.763 63.158 0.00 0.00 0.00 2.75
379 380 1.941820 AGTGCTAGGGGAGGGGAGA 60.942 63.158 0.00 0.00 0.00 3.71
380 381 1.764054 CAGTGCTAGGGGAGGGGAG 60.764 68.421 0.00 0.00 0.00 4.30
381 382 2.368594 CAGTGCTAGGGGAGGGGA 59.631 66.667 0.00 0.00 0.00 4.81
382 383 3.483869 GCAGTGCTAGGGGAGGGG 61.484 72.222 8.18 0.00 0.00 4.79
383 384 1.639635 AATGCAGTGCTAGGGGAGGG 61.640 60.000 17.60 0.00 0.00 4.30
384 385 0.465097 CAATGCAGTGCTAGGGGAGG 60.465 60.000 17.60 0.00 0.00 4.30
385 386 0.465097 CCAATGCAGTGCTAGGGGAG 60.465 60.000 17.60 0.00 0.00 4.30
386 387 1.207488 ACCAATGCAGTGCTAGGGGA 61.207 55.000 17.60 0.00 0.00 4.81
387 388 0.749454 GACCAATGCAGTGCTAGGGG 60.749 60.000 17.60 14.36 0.00 4.79
388 389 0.749454 GGACCAATGCAGTGCTAGGG 60.749 60.000 17.60 16.10 0.00 3.53
389 390 1.091771 CGGACCAATGCAGTGCTAGG 61.092 60.000 17.60 16.76 0.00 3.02
390 391 1.709147 GCGGACCAATGCAGTGCTAG 61.709 60.000 17.60 5.88 0.00 3.42
391 392 1.745115 GCGGACCAATGCAGTGCTA 60.745 57.895 17.60 3.01 0.00 3.49
392 393 3.058160 GCGGACCAATGCAGTGCT 61.058 61.111 17.60 0.00 0.00 4.40
393 394 4.120331 GGCGGACCAATGCAGTGC 62.120 66.667 9.04 8.58 35.26 4.40
394 395 2.360350 AGGCGGACCAATGCAGTG 60.360 61.111 7.29 7.29 39.06 3.66
395 396 2.045926 GAGGCGGACCAATGCAGT 60.046 61.111 0.00 0.00 39.06 4.40
396 397 2.825836 GGAGGCGGACCAATGCAG 60.826 66.667 0.00 0.00 39.06 4.41
397 398 4.424711 GGGAGGCGGACCAATGCA 62.425 66.667 0.00 0.00 39.06 3.96
398 399 3.721370 ATGGGAGGCGGACCAATGC 62.721 63.158 2.17 0.00 40.73 3.56
399 400 1.526917 GATGGGAGGCGGACCAATG 60.527 63.158 2.17 0.00 40.73 2.82
400 401 2.757124 GGATGGGAGGCGGACCAAT 61.757 63.158 2.17 0.00 40.73 3.16
401 402 3.407967 GGATGGGAGGCGGACCAA 61.408 66.667 2.17 0.00 40.73 3.67
402 403 4.731853 TGGATGGGAGGCGGACCA 62.732 66.667 0.57 0.57 41.76 4.02
403 404 3.171388 ATGGATGGGAGGCGGACC 61.171 66.667 0.00 0.00 0.00 4.46
404 405 2.427753 GATGGATGGGAGGCGGAC 59.572 66.667 0.00 0.00 0.00 4.79
405 406 2.849162 GGATGGATGGGAGGCGGA 60.849 66.667 0.00 0.00 0.00 5.54
406 407 3.170672 TGGATGGATGGGAGGCGG 61.171 66.667 0.00 0.00 0.00 6.13
407 408 1.987807 AAGTGGATGGATGGGAGGCG 61.988 60.000 0.00 0.00 0.00 5.52
408 409 0.259938 AAAGTGGATGGATGGGAGGC 59.740 55.000 0.00 0.00 0.00 4.70
409 410 1.410648 CCAAAGTGGATGGATGGGAGG 60.411 57.143 0.00 0.00 40.96 4.30
410 411 2.062971 CCAAAGTGGATGGATGGGAG 57.937 55.000 0.00 0.00 40.96 4.30
412 413 3.212377 CCCAAAGTGGATGGATGGG 57.788 57.895 0.00 0.00 44.38 4.00
413 414 2.102578 GTTCCCAAAGTGGATGGATGG 58.897 52.381 0.00 0.00 40.96 3.51
414 415 2.102578 GGTTCCCAAAGTGGATGGATG 58.897 52.381 0.00 0.00 40.96 3.51
415 416 1.340991 CGGTTCCCAAAGTGGATGGAT 60.341 52.381 0.00 0.00 40.96 3.41
416 417 0.037590 CGGTTCCCAAAGTGGATGGA 59.962 55.000 0.00 0.00 40.96 3.41
417 418 1.595093 GCGGTTCCCAAAGTGGATGG 61.595 60.000 0.00 0.00 40.96 3.51
418 419 1.595093 GGCGGTTCCCAAAGTGGATG 61.595 60.000 0.00 0.00 40.96 3.51
419 420 1.304134 GGCGGTTCCCAAAGTGGAT 60.304 57.895 0.00 0.00 40.96 3.41
420 421 2.114411 GGCGGTTCCCAAAGTGGA 59.886 61.111 0.00 0.00 40.96 4.02
421 422 1.395826 TTTGGCGGTTCCCAAAGTGG 61.396 55.000 2.45 0.00 46.84 4.00
422 423 2.119886 TTTGGCGGTTCCCAAAGTG 58.880 52.632 2.45 0.00 46.84 3.16
423 424 4.688770 TTTGGCGGTTCCCAAAGT 57.311 50.000 2.45 0.00 46.84 2.66
426 427 2.197324 AGCTTTGGCGGTTCCCAA 59.803 55.556 0.00 0.00 42.87 4.12
427 428 2.597217 CAGCTTTGGCGGTTCCCA 60.597 61.111 0.00 0.00 44.37 4.37
428 429 2.597510 ACAGCTTTGGCGGTTCCC 60.598 61.111 0.00 0.00 43.83 3.97
429 430 2.954611 GACAGCTTTGGCGGTTCC 59.045 61.111 0.00 0.00 46.03 3.62
430 431 2.171489 GACGACAGCTTTGGCGGTTC 62.171 60.000 6.14 0.00 46.03 3.62
431 432 2.203153 ACGACAGCTTTGGCGGTT 60.203 55.556 6.14 0.00 46.03 4.44
433 434 3.777925 CGACGACAGCTTTGGCGG 61.778 66.667 6.14 0.00 46.09 6.13
435 436 3.423154 CCCGACGACAGCTTTGGC 61.423 66.667 0.00 0.00 39.06 4.52
436 437 3.423154 GCCCGACGACAGCTTTGG 61.423 66.667 0.00 0.00 0.00 3.28
437 438 3.423154 GGCCCGACGACAGCTTTG 61.423 66.667 0.00 0.00 0.00 2.77
438 439 3.626924 AGGCCCGACGACAGCTTT 61.627 61.111 0.00 0.00 0.00 3.51
439 440 4.379243 CAGGCCCGACGACAGCTT 62.379 66.667 0.00 0.00 0.00 3.74
450 451 2.680974 TTATCATCGCAGGCAGGCCC 62.681 60.000 6.70 0.00 36.58 5.80
451 452 0.819259 TTTATCATCGCAGGCAGGCC 60.819 55.000 0.97 0.97 0.00 5.19
452 453 0.590195 CTTTATCATCGCAGGCAGGC 59.410 55.000 0.00 0.00 0.00 4.85
453 454 0.590195 GCTTTATCATCGCAGGCAGG 59.410 55.000 0.00 0.00 0.00 4.85
454 455 0.234106 CGCTTTATCATCGCAGGCAG 59.766 55.000 0.00 0.00 0.00 4.85
455 456 2.310309 CGCTTTATCATCGCAGGCA 58.690 52.632 0.00 0.00 0.00 4.75
461 462 2.140065 TCCAGAGCGCTTTATCATCG 57.860 50.000 13.26 0.00 0.00 3.84
462 463 3.610242 CGTATCCAGAGCGCTTTATCATC 59.390 47.826 13.26 0.00 0.00 2.92
463 464 3.579709 CGTATCCAGAGCGCTTTATCAT 58.420 45.455 13.26 3.10 0.00 2.45
464 465 2.862530 GCGTATCCAGAGCGCTTTATCA 60.863 50.000 13.26 0.00 46.55 2.15
465 466 1.721926 GCGTATCCAGAGCGCTTTATC 59.278 52.381 13.26 0.00 46.55 1.75
466 467 1.784525 GCGTATCCAGAGCGCTTTAT 58.215 50.000 13.26 5.66 46.55 1.40
467 468 3.267900 GCGTATCCAGAGCGCTTTA 57.732 52.632 13.26 0.00 46.55 1.85
468 469 4.110493 GCGTATCCAGAGCGCTTT 57.890 55.556 13.26 1.42 46.55 3.51
472 473 2.727647 GCGAGCGTATCCAGAGCG 60.728 66.667 0.00 0.00 35.78 5.03
473 474 1.946650 GTGCGAGCGTATCCAGAGC 60.947 63.158 0.00 0.00 0.00 4.09
474 475 0.317436 GAGTGCGAGCGTATCCAGAG 60.317 60.000 0.00 0.00 0.00 3.35
475 476 1.725557 GGAGTGCGAGCGTATCCAGA 61.726 60.000 7.77 0.00 0.00 3.86
476 477 1.299468 GGAGTGCGAGCGTATCCAG 60.299 63.158 7.77 0.00 0.00 3.86
477 478 2.805546 GGAGTGCGAGCGTATCCA 59.194 61.111 7.77 0.00 0.00 3.41
478 479 2.353607 CGGAGTGCGAGCGTATCC 60.354 66.667 0.00 3.78 0.00 2.59
479 480 3.025176 GCGGAGTGCGAGCGTATC 61.025 66.667 8.74 0.00 0.00 2.24
488 489 1.026718 ATGCTAACTTGGCGGAGTGC 61.027 55.000 0.00 0.00 45.38 4.40
489 490 1.131126 CAATGCTAACTTGGCGGAGTG 59.869 52.381 0.00 0.00 0.00 3.51
490 491 1.453155 CAATGCTAACTTGGCGGAGT 58.547 50.000 0.00 0.00 0.00 3.85
491 492 0.734889 CCAATGCTAACTTGGCGGAG 59.265 55.000 0.00 0.00 36.98 4.63
492 493 2.866872 CCAATGCTAACTTGGCGGA 58.133 52.632 0.00 0.00 36.98 5.54
496 497 1.549203 AGTGGCCAATGCTAACTTGG 58.451 50.000 7.24 0.00 44.94 3.61
497 498 2.094545 GGAAGTGGCCAATGCTAACTTG 60.095 50.000 11.80 0.00 41.35 3.16
498 499 2.171003 GGAAGTGGCCAATGCTAACTT 58.829 47.619 11.80 6.68 42.82 2.66
499 500 1.355720 AGGAAGTGGCCAATGCTAACT 59.644 47.619 11.80 0.00 36.39 2.24
500 501 1.474077 CAGGAAGTGGCCAATGCTAAC 59.526 52.381 11.80 0.00 37.74 2.34
501 502 1.616725 CCAGGAAGTGGCCAATGCTAA 60.617 52.381 11.80 0.00 40.39 3.09
502 503 0.034186 CCAGGAAGTGGCCAATGCTA 60.034 55.000 11.80 0.00 40.39 3.49
503 504 1.304713 CCAGGAAGTGGCCAATGCT 60.305 57.895 11.80 9.61 40.39 3.79
504 505 3.291611 CCAGGAAGTGGCCAATGC 58.708 61.111 7.24 4.01 40.39 3.56
512 513 4.935352 TCCAATTTCAAACCAGGAAGTG 57.065 40.909 0.00 0.00 0.00 3.16
513 514 5.012046 GGATTCCAATTTCAAACCAGGAAGT 59.988 40.000 0.00 0.00 38.41 3.01
514 515 5.011943 TGGATTCCAATTTCAAACCAGGAAG 59.988 40.000 1.94 0.00 38.41 3.46
515 516 4.904251 TGGATTCCAATTTCAAACCAGGAA 59.096 37.500 1.94 0.00 39.24 3.36
516 517 4.487804 TGGATTCCAATTTCAAACCAGGA 58.512 39.130 1.94 0.00 0.00 3.86
517 518 4.824289 CTGGATTCCAATTTCAAACCAGG 58.176 43.478 6.88 0.00 39.63 4.45
518 519 4.248058 GCTGGATTCCAATTTCAAACCAG 58.752 43.478 6.88 14.11 44.15 4.00
519 520 3.007831 GGCTGGATTCCAATTTCAAACCA 59.992 43.478 6.88 0.00 30.80 3.67
520 521 3.007831 TGGCTGGATTCCAATTTCAAACC 59.992 43.478 6.88 0.00 30.80 3.27
521 522 4.270245 TGGCTGGATTCCAATTTCAAAC 57.730 40.909 6.88 0.00 30.80 2.93
522 523 4.323638 CCATGGCTGGATTCCAATTTCAAA 60.324 41.667 6.88 0.00 46.37 2.69
523 524 3.198200 CCATGGCTGGATTCCAATTTCAA 59.802 43.478 6.88 0.00 46.37 2.69
524 525 2.767394 CCATGGCTGGATTCCAATTTCA 59.233 45.455 6.88 3.51 46.37 2.69
525 526 2.484241 GCCATGGCTGGATTCCAATTTC 60.484 50.000 29.98 0.00 46.37 2.17
526 527 1.487558 GCCATGGCTGGATTCCAATTT 59.512 47.619 29.98 0.00 46.37 1.82
527 528 1.125633 GCCATGGCTGGATTCCAATT 58.874 50.000 29.98 0.00 46.37 2.32
528 529 0.761702 GGCCATGGCTGGATTCCAAT 60.762 55.000 34.70 0.00 46.37 3.16
529 530 1.381599 GGCCATGGCTGGATTCCAA 60.382 57.895 34.70 0.00 46.37 3.53
530 531 0.992970 TAGGCCATGGCTGGATTCCA 60.993 55.000 34.70 5.05 46.37 3.53
531 532 0.538287 GTAGGCCATGGCTGGATTCC 60.538 60.000 34.70 17.14 46.37 3.01
532 533 0.538287 GGTAGGCCATGGCTGGATTC 60.538 60.000 34.70 17.88 46.37 2.52
533 534 1.288508 TGGTAGGCCATGGCTGGATT 61.289 55.000 34.70 17.72 46.37 3.01
534 535 1.697394 TGGTAGGCCATGGCTGGAT 60.697 57.895 34.70 20.47 46.37 3.41
535 536 2.286045 TGGTAGGCCATGGCTGGA 60.286 61.111 34.70 18.11 46.37 3.86
543 544 4.642488 TGGACCGGTGGTAGGCCA 62.642 66.667 14.63 9.57 43.73 5.36
544 545 1.339644 TATTGGACCGGTGGTAGGCC 61.340 60.000 14.63 6.25 35.25 5.19
545 546 0.763035 ATATTGGACCGGTGGTAGGC 59.237 55.000 14.63 0.00 35.25 3.93
546 547 2.436542 TCAATATTGGACCGGTGGTAGG 59.563 50.000 14.63 0.00 35.25 3.18
547 548 3.463944 GTCAATATTGGACCGGTGGTAG 58.536 50.000 14.63 0.00 35.25 3.18
548 549 2.159071 CGTCAATATTGGACCGGTGGTA 60.159 50.000 14.63 0.00 35.25 3.25
549 550 1.406341 CGTCAATATTGGACCGGTGGT 60.406 52.381 14.63 0.00 39.44 4.16
550 551 1.134640 TCGTCAATATTGGACCGGTGG 60.135 52.381 14.63 0.00 31.55 4.61
551 552 2.303163 TCGTCAATATTGGACCGGTG 57.697 50.000 14.63 0.00 31.55 4.94
552 553 3.134081 AGATTCGTCAATATTGGACCGGT 59.866 43.478 6.92 6.92 31.55 5.28
553 554 3.494626 CAGATTCGTCAATATTGGACCGG 59.505 47.826 15.36 0.00 31.55 5.28
554 555 3.494626 CCAGATTCGTCAATATTGGACCG 59.505 47.826 15.36 14.21 32.20 4.79
555 556 3.815401 CCCAGATTCGTCAATATTGGACC 59.185 47.826 15.36 3.56 32.20 4.46
556 557 4.703897 TCCCAGATTCGTCAATATTGGAC 58.296 43.478 15.36 10.81 32.20 4.02
557 558 4.408921 ACTCCCAGATTCGTCAATATTGGA 59.591 41.667 15.36 3.11 32.20 3.53
558 559 4.708177 ACTCCCAGATTCGTCAATATTGG 58.292 43.478 15.36 0.63 31.09 3.16
559 560 5.817296 TGAACTCCCAGATTCGTCAATATTG 59.183 40.000 9.29 9.29 0.00 1.90
560 561 5.989477 TGAACTCCCAGATTCGTCAATATT 58.011 37.500 0.00 0.00 0.00 1.28
561 562 5.614324 TGAACTCCCAGATTCGTCAATAT 57.386 39.130 0.00 0.00 0.00 1.28
562 563 5.359756 CATGAACTCCCAGATTCGTCAATA 58.640 41.667 0.00 0.00 0.00 1.90
563 564 3.981071 TGAACTCCCAGATTCGTCAAT 57.019 42.857 0.00 0.00 0.00 2.57
564 565 3.599343 CATGAACTCCCAGATTCGTCAA 58.401 45.455 0.00 0.00 0.00 3.18
565 566 2.093500 CCATGAACTCCCAGATTCGTCA 60.093 50.000 0.00 0.00 0.00 4.35
566 567 2.555199 CCATGAACTCCCAGATTCGTC 58.445 52.381 0.00 0.00 0.00 4.20
567 568 1.210478 CCCATGAACTCCCAGATTCGT 59.790 52.381 0.00 0.00 0.00 3.85
568 569 1.210478 ACCCATGAACTCCCAGATTCG 59.790 52.381 0.00 0.00 0.00 3.34
569 570 3.372440 AACCCATGAACTCCCAGATTC 57.628 47.619 0.00 0.00 0.00 2.52
570 571 3.434309 CAAACCCATGAACTCCCAGATT 58.566 45.455 0.00 0.00 0.00 2.40
571 572 2.291800 CCAAACCCATGAACTCCCAGAT 60.292 50.000 0.00 0.00 0.00 2.90
572 573 1.075374 CCAAACCCATGAACTCCCAGA 59.925 52.381 0.00 0.00 0.00 3.86
600 601 0.625849 ATTGGCGGAGGGAAGAATGT 59.374 50.000 0.00 0.00 0.00 2.71
602 603 3.490348 CAATATTGGCGGAGGGAAGAAT 58.510 45.455 7.62 0.00 0.00 2.40
618 619 4.717877 TGAATGACGAATCTGGCCAATAT 58.282 39.130 7.01 0.00 0.00 1.28
633 634 2.280628 GACCCGTCCTTCATGAATGAC 58.719 52.381 25.51 25.51 36.36 3.06
649 650 1.161843 CCACACGTTAATGGTGACCC 58.838 55.000 14.33 0.00 38.73 4.46
753 754 5.408299 CACACAAGAGACAAATCGGTCATTA 59.592 40.000 0.00 0.00 40.29 1.90
865 872 2.215451 GAGTGGGGTGCATGGTGGAT 62.215 60.000 0.00 0.00 0.00 3.41
927 934 2.417257 CGTGCATTGGATGGGGTGG 61.417 63.158 0.00 0.00 0.00 4.61
928 935 3.067480 GCGTGCATTGGATGGGGTG 62.067 63.158 0.00 0.00 0.00 4.61
929 936 2.755469 GCGTGCATTGGATGGGGT 60.755 61.111 0.00 0.00 0.00 4.95
930 937 2.755064 TGCGTGCATTGGATGGGG 60.755 61.111 0.00 0.00 0.00 4.96
956 963 0.108709 GTTATGTGGGGTGCGTACGA 60.109 55.000 21.65 0.80 0.00 3.43
1081 1088 1.298788 GTTGTCGTTTGGCCCGTTG 60.299 57.895 0.00 0.00 0.00 4.10
1272 1279 2.818487 CGCCAATATCGCCGTTGCA 61.818 57.895 0.00 0.00 37.32 4.08
1273 1280 2.052237 CGCCAATATCGCCGTTGC 60.052 61.111 0.00 0.00 0.00 4.17
1274 1281 2.052237 GCGCCAATATCGCCGTTG 60.052 61.111 0.00 0.00 46.18 4.10
1344 1363 0.034756 TTAACGCAGCAGCTCTTGGA 59.965 50.000 0.00 0.00 39.10 3.53
1401 1420 0.933097 GCATCGATCTGCATGACGTT 59.067 50.000 6.13 0.00 41.87 3.99
1413 1432 4.838152 AACGGCGCTGGCATCGAT 62.838 61.111 22.44 0.00 42.47 3.59
1561 1580 2.124403 ACCGCCTCGACCGTATCT 60.124 61.111 0.79 0.00 0.00 1.98
1878 1904 4.515567 GGTTCAAACAGACCAAGTAAGGAG 59.484 45.833 0.00 0.00 0.00 3.69
1895 1921 1.116308 TGGTGTGAGACGAGGTTCAA 58.884 50.000 0.00 0.00 0.00 2.69
1896 1922 1.116308 TTGGTGTGAGACGAGGTTCA 58.884 50.000 0.00 0.00 0.00 3.18
1897 1923 1.865340 GTTTGGTGTGAGACGAGGTTC 59.135 52.381 0.00 0.00 0.00 3.62
1898 1924 1.474498 GGTTTGGTGTGAGACGAGGTT 60.474 52.381 0.00 0.00 0.00 3.50
1899 1925 0.106149 GGTTTGGTGTGAGACGAGGT 59.894 55.000 0.00 0.00 0.00 3.85
1900 1926 0.105964 TGGTTTGGTGTGAGACGAGG 59.894 55.000 0.00 0.00 0.00 4.63
1901 1927 1.948104 TTGGTTTGGTGTGAGACGAG 58.052 50.000 0.00 0.00 0.00 4.18
1902 1928 2.404923 TTTGGTTTGGTGTGAGACGA 57.595 45.000 0.00 0.00 0.00 4.20
1903 1929 5.371115 AATATTTGGTTTGGTGTGAGACG 57.629 39.130 0.00 0.00 0.00 4.18
1904 1930 7.174253 TCACTAATATTTGGTTTGGTGTGAGAC 59.826 37.037 0.00 0.00 36.20 3.36
1905 1931 7.174253 GTCACTAATATTTGGTTTGGTGTGAGA 59.826 37.037 0.00 0.00 36.20 3.27
1906 1932 7.305474 GTCACTAATATTTGGTTTGGTGTGAG 58.695 38.462 0.00 0.00 36.20 3.51
1907 1933 6.072948 CGTCACTAATATTTGGTTTGGTGTGA 60.073 38.462 0.00 0.00 36.20 3.58
1908 1934 6.083630 CGTCACTAATATTTGGTTTGGTGTG 58.916 40.000 0.00 0.00 36.20 3.82
1909 1935 5.335348 GCGTCACTAATATTTGGTTTGGTGT 60.335 40.000 0.00 0.00 36.20 4.16
1910 1936 5.092781 GCGTCACTAATATTTGGTTTGGTG 58.907 41.667 0.00 0.00 36.13 4.17
1911 1937 4.157105 GGCGTCACTAATATTTGGTTTGGT 59.843 41.667 0.00 0.00 0.00 3.67
1912 1938 4.156922 TGGCGTCACTAATATTTGGTTTGG 59.843 41.667 0.00 0.00 0.00 3.28
1913 1939 5.092781 GTGGCGTCACTAATATTTGGTTTG 58.907 41.667 14.12 0.00 40.58 2.93
1914 1940 5.305139 GTGGCGTCACTAATATTTGGTTT 57.695 39.130 14.12 0.00 40.58 3.27
1915 1941 4.957759 GTGGCGTCACTAATATTTGGTT 57.042 40.909 14.12 0.00 40.58 3.67
2027 2086 4.592485 TTCCCACATTGCGTTTACATTT 57.408 36.364 0.00 0.00 0.00 2.32
2219 2623 3.191371 GCAGTTTCATGGATTTCGAGGTT 59.809 43.478 0.00 0.00 0.00 3.50
2226 2630 4.708421 ACATGCTAGCAGTTTCATGGATTT 59.292 37.500 23.89 0.00 40.26 2.17
2232 2636 4.096984 GCCTAAACATGCTAGCAGTTTCAT 59.903 41.667 30.93 19.51 36.85 2.57
2244 2648 0.385390 CCGGGATTGCCTAAACATGC 59.615 55.000 0.00 0.00 0.00 4.06
2245 2649 1.762708 ACCGGGATTGCCTAAACATG 58.237 50.000 6.32 0.00 0.00 3.21
2247 2651 2.296073 AAACCGGGATTGCCTAAACA 57.704 45.000 6.32 0.00 0.00 2.83
2248 2652 3.317149 GGATAAACCGGGATTGCCTAAAC 59.683 47.826 6.32 0.00 0.00 2.01
2596 3007 3.451178 TCTCCTCCACTAATTGTAGCCAC 59.549 47.826 0.00 0.00 0.00 5.01
2597 3008 3.719871 TCTCCTCCACTAATTGTAGCCA 58.280 45.455 0.00 0.00 0.00 4.75
2618 3671 0.816825 CGCTAACTCTGCATGCCCAT 60.817 55.000 16.68 0.00 0.00 4.00
2655 3709 4.966787 TTGCTCCCAACACCCGCC 62.967 66.667 0.00 0.00 0.00 6.13
2720 4842 0.962356 ATGTTGCTCTCCTTTGGCCG 60.962 55.000 0.00 0.00 0.00 6.13
2723 4845 2.005451 CTCGATGTTGCTCTCCTTTGG 58.995 52.381 0.00 0.00 0.00 3.28
2724 4846 2.005451 CCTCGATGTTGCTCTCCTTTG 58.995 52.381 0.00 0.00 0.00 2.77
2725 4847 1.625818 ACCTCGATGTTGCTCTCCTTT 59.374 47.619 0.00 0.00 0.00 3.11
2733 4855 1.349627 CATGCGACCTCGATGTTGC 59.650 57.895 22.09 22.09 44.42 4.17
2758 4880 1.348775 GGCCAGCAGGTTCTCCCTAT 61.349 60.000 0.00 0.00 43.86 2.57
2785 4907 3.570926 TGTAGTAGCACTCTTTCACCG 57.429 47.619 0.00 0.00 0.00 4.94
2788 4910 4.799586 GCCTGTTGTAGTAGCACTCTTTCA 60.800 45.833 0.00 0.00 0.00 2.69
2789 4911 3.680458 GCCTGTTGTAGTAGCACTCTTTC 59.320 47.826 0.00 0.00 0.00 2.62
2809 4931 2.093341 TCCTACTACATTTCCCAACGCC 60.093 50.000 0.00 0.00 0.00 5.68
2811 4933 6.016943 TGTTTTTCCTACTACATTTCCCAACG 60.017 38.462 0.00 0.00 0.00 4.10
2821 4943 6.105397 ACGAAGGATGTTTTTCCTACTACA 57.895 37.500 0.00 0.00 45.63 2.74
2829 4951 6.763610 AGATCATAGGACGAAGGATGTTTTTC 59.236 38.462 0.00 0.00 0.00 2.29
2835 4957 5.184671 TGATGAGATCATAGGACGAAGGATG 59.815 44.000 0.00 0.00 36.57 3.51
2836 4958 5.184864 GTGATGAGATCATAGGACGAAGGAT 59.815 44.000 0.00 0.00 42.04 3.24
2882 5005 5.596845 TGTTGGTTTTGGAGAAAGCAATAC 58.403 37.500 16.08 8.33 45.46 1.89
2901 5024 3.199071 TGGGGTAAGTGTAGGCTATGTTG 59.801 47.826 0.00 0.00 0.00 3.33
2905 5029 3.700863 TCTGGGGTAAGTGTAGGCTAT 57.299 47.619 0.00 0.00 0.00 2.97
2922 5046 4.134379 ACAGACCTAGTTCATGCATCTG 57.866 45.455 0.00 0.90 38.42 2.90
2973 5097 6.491403 AGCCATAAGGGTCAATACATTGAATC 59.509 38.462 6.22 2.91 43.69 2.52
2990 5114 5.762825 ACATGATACTTTGCAGCCATAAG 57.237 39.130 0.00 0.00 0.00 1.73
2993 5117 3.429822 GCAACATGATACTTTGCAGCCAT 60.430 43.478 11.82 0.00 44.17 4.40
3003 5127 4.323417 TCGAAAACCTGCAACATGATACT 58.677 39.130 0.00 0.00 0.00 2.12
3038 5162 3.404224 TTGTAACCCTACGTTGCATCA 57.596 42.857 0.00 0.00 45.07 3.07
3051 5175 9.623000 AGGTTTAGTATGGACATAATTGTAACC 57.377 33.333 15.47 15.47 35.79 2.85
3060 5184 8.158132 TCACAAACAAGGTTTAGTATGGACATA 58.842 33.333 0.00 0.00 0.00 2.29
3070 5194 7.881142 TCCATACATTCACAAACAAGGTTTAG 58.119 34.615 0.00 0.00 0.00 1.85
3113 5237 9.269415 GCTTACAATAAAATGTAGTGGTAAACG 57.731 33.333 0.00 0.00 37.13 3.60
3123 5247 9.109393 CTCAAGGCTAGCTTACAATAAAATGTA 57.891 33.333 15.72 0.00 34.75 2.29
3124 5248 7.415653 GCTCAAGGCTAGCTTACAATAAAATGT 60.416 37.037 15.72 0.00 37.01 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.