Multiple sequence alignment - TraesCS3B01G238500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G238500 chr3B 100.000 4281 0 0 1 4281 373841628 373845908 0.000000e+00 7906.0
1 TraesCS3B01G238500 chr3D 88.052 2084 83 77 1967 3969 276576260 276574262 0.000000e+00 2316.0
2 TraesCS3B01G238500 chr3D 83.762 1749 92 76 232 1894 276577954 276576312 0.000000e+00 1480.0
3 TraesCS3B01G238500 chr3D 85.659 258 26 7 4028 4281 276573890 276573640 1.180000e-65 261.0
4 TraesCS3B01G238500 chr3D 82.902 193 16 10 50 234 276578175 276577992 1.590000e-34 158.0
5 TraesCS3B01G238500 chr3D 90.164 61 5 1 9 68 276578376 276578316 1.280000e-10 78.7
6 TraesCS3B01G238500 chr3A 91.661 1559 63 27 1967 3493 363416964 363418487 0.000000e+00 2097.0
7 TraesCS3B01G238500 chr3A 83.143 1750 102 82 229 1880 363415248 363416902 0.000000e+00 1419.0
8 TraesCS3B01G238500 chr3A 88.060 804 58 22 3494 4281 363418519 363419300 0.000000e+00 918.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G238500 chr3B 373841628 373845908 4280 False 7906.00 7906 100.000000 1 4281 1 chr3B.!!$F1 4280
1 TraesCS3B01G238500 chr3D 276573640 276578376 4736 True 858.74 2316 86.107800 9 4281 5 chr3D.!!$R1 4272
2 TraesCS3B01G238500 chr3A 363415248 363419300 4052 False 1478.00 2097 87.621333 229 4281 3 chr3A.!!$F1 4052

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
312 520 0.094730 CGTAGCAGTTTAAGCGTGGC 59.905 55.0 0.00 0.00 37.01 5.01 F
565 785 0.166814 ACTTGGTACGTACGTCTCGC 59.833 55.0 26.53 13.25 0.00 5.03 F
983 1284 0.481128 TCCTCCACAAAAGGGGTTCC 59.519 55.0 0.00 0.00 34.46 3.62 F
1888 2243 0.038526 CTTACTTGGTCGGTCGTGCT 60.039 55.0 0.00 0.00 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1135 1460 0.037882 TTGAAGCTGAGCGACCTCTG 60.038 55.0 0.00 0.0 38.93 3.35 R
1414 1754 0.373370 GATGCAGATGCGCGTGTTTA 59.627 50.0 6.97 0.0 45.83 2.01 R
2822 3222 0.245539 TCGGTGGGTTTCTCGTCATC 59.754 55.0 0.00 0.0 0.00 2.92 R
3751 4232 0.024364 CCGCGCAAAAACAACAACAC 59.976 50.0 8.75 0.0 0.00 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.677875 ACGGAGGGGTACGTGGTC 60.678 66.667 0.00 0.00 0.00 4.02
35 37 3.701542 TGGTCAGCCAGTGAGATAAGTAG 59.298 47.826 0.00 0.00 40.46 2.57
38 40 4.037446 GTCAGCCAGTGAGATAAGTAGGAG 59.963 50.000 0.00 0.00 35.13 3.69
73 235 2.543012 CGTCTCAATAATGCAGAGCAGG 59.457 50.000 0.00 0.00 43.65 4.85
75 237 1.263484 CTCAATAATGCAGAGCAGGCG 59.737 52.381 0.00 0.00 43.65 5.52
87 249 3.797353 CAGGCGCTATGGGTGGGT 61.797 66.667 7.64 0.00 0.00 4.51
91 253 4.108299 CGCTATGGGTGGGTGGCA 62.108 66.667 0.00 0.00 0.00 4.92
120 283 6.107901 AGATAGCAGCCTGGAATTAGTTAG 57.892 41.667 0.00 0.00 0.00 2.34
147 310 0.884704 ACCTTACCTGCAACGCTGTG 60.885 55.000 0.00 0.00 0.00 3.66
148 311 0.884704 CCTTACCTGCAACGCTGTGT 60.885 55.000 0.00 0.00 0.00 3.72
149 312 0.235665 CTTACCTGCAACGCTGTGTG 59.764 55.000 0.00 0.00 0.00 3.82
150 313 0.462937 TTACCTGCAACGCTGTGTGT 60.463 50.000 0.00 0.00 0.00 3.72
151 314 0.878523 TACCTGCAACGCTGTGTGTC 60.879 55.000 0.00 0.00 0.00 3.67
152 315 2.633657 CTGCAACGCTGTGTGTCC 59.366 61.111 0.00 0.00 0.00 4.02
153 316 2.896801 CTGCAACGCTGTGTGTCCC 61.897 63.158 0.00 0.00 0.00 4.46
154 317 4.012895 GCAACGCTGTGTGTCCCG 62.013 66.667 0.00 0.00 0.00 5.14
155 318 3.345808 CAACGCTGTGTGTCCCGG 61.346 66.667 0.00 0.00 0.00 5.73
156 319 3.857038 AACGCTGTGTGTCCCGGT 61.857 61.111 0.00 0.00 0.00 5.28
157 320 2.500714 AACGCTGTGTGTCCCGGTA 61.501 57.895 0.00 0.00 0.00 4.02
158 321 2.030490 AACGCTGTGTGTCCCGGTAA 62.030 55.000 0.00 0.00 0.00 2.85
190 358 0.231279 GAAGCGCGTGAAAACGAAGA 59.769 50.000 8.43 0.00 34.64 2.87
192 360 1.783264 GCGCGTGAAAACGAAGACG 60.783 57.895 8.43 0.00 45.75 4.18
193 361 1.154908 CGCGTGAAAACGAAGACGG 60.155 57.895 0.00 0.00 44.46 4.79
194 362 1.542272 CGCGTGAAAACGAAGACGGA 61.542 55.000 0.00 0.00 44.46 4.69
195 363 0.161024 GCGTGAAAACGAAGACGGAG 59.839 55.000 1.87 0.00 44.46 4.63
196 364 1.762419 CGTGAAAACGAAGACGGAGA 58.238 50.000 0.00 0.00 44.46 3.71
197 365 1.450905 CGTGAAAACGAAGACGGAGAC 59.549 52.381 0.00 0.00 44.46 3.36
221 389 1.594331 AGACGCTGTTTTCTTGGACC 58.406 50.000 0.00 0.00 0.00 4.46
225 393 1.305201 GCTGTTTTCTTGGACCGTCA 58.695 50.000 0.00 0.00 0.00 4.35
272 480 5.863935 ACAGCAACAACAAGAGAAAAGAAAC 59.136 36.000 0.00 0.00 0.00 2.78
273 481 5.289434 CAGCAACAACAAGAGAAAAGAAACC 59.711 40.000 0.00 0.00 0.00 3.27
284 492 9.816354 CAAGAGAAAAGAAACCAAAGGAAAATA 57.184 29.630 0.00 0.00 0.00 1.40
286 494 9.421399 AGAGAAAAGAAACCAAAGGAAAATAGA 57.579 29.630 0.00 0.00 0.00 1.98
287 495 9.684448 GAGAAAAGAAACCAAAGGAAAATAGAG 57.316 33.333 0.00 0.00 0.00 2.43
288 496 9.201989 AGAAAAGAAACCAAAGGAAAATAGAGT 57.798 29.630 0.00 0.00 0.00 3.24
291 499 9.642343 AAAGAAACCAAAGGAAAATAGAGTAGT 57.358 29.630 0.00 0.00 0.00 2.73
293 501 9.722184 AGAAACCAAAGGAAAATAGAGTAGTAC 57.278 33.333 0.00 0.00 0.00 2.73
294 502 8.543862 AAACCAAAGGAAAATAGAGTAGTACG 57.456 34.615 0.00 0.00 0.00 3.67
312 520 0.094730 CGTAGCAGTTTAAGCGTGGC 59.905 55.000 0.00 0.00 37.01 5.01
416 628 3.715015 GGTCTTCCGCCTCCTCTT 58.285 61.111 0.00 0.00 0.00 2.85
419 631 0.390472 GTCTTCCGCCTCCTCTTGTG 60.390 60.000 0.00 0.00 0.00 3.33
421 633 2.454832 CTTCCGCCTCCTCTTGTGCA 62.455 60.000 0.00 0.00 0.00 4.57
422 634 1.841302 TTCCGCCTCCTCTTGTGCAT 61.841 55.000 0.00 0.00 0.00 3.96
425 637 0.461548 CGCCTCCTCTTGTGCATCTA 59.538 55.000 0.00 0.00 0.00 1.98
426 638 1.134699 CGCCTCCTCTTGTGCATCTAA 60.135 52.381 0.00 0.00 0.00 2.10
427 639 2.484417 CGCCTCCTCTTGTGCATCTAAT 60.484 50.000 0.00 0.00 0.00 1.73
428 640 2.877168 GCCTCCTCTTGTGCATCTAATG 59.123 50.000 0.00 0.00 0.00 1.90
438 655 4.507710 TGTGCATCTAATGACTTGGACTC 58.492 43.478 0.00 0.00 32.41 3.36
483 703 3.491652 GCCGCTTGCGACCTTCTC 61.492 66.667 16.99 0.00 0.00 2.87
484 704 2.262915 CCGCTTGCGACCTTCTCT 59.737 61.111 16.99 0.00 0.00 3.10
485 705 1.807573 CCGCTTGCGACCTTCTCTC 60.808 63.158 16.99 0.00 0.00 3.20
487 707 1.594310 GCTTGCGACCTTCTCTCCT 59.406 57.895 0.00 0.00 0.00 3.69
488 708 0.459411 GCTTGCGACCTTCTCTCCTC 60.459 60.000 0.00 0.00 0.00 3.71
489 709 1.181786 CTTGCGACCTTCTCTCCTCT 58.818 55.000 0.00 0.00 0.00 3.69
493 713 1.408266 GCGACCTTCTCTCCTCTCTCT 60.408 57.143 0.00 0.00 0.00 3.10
494 714 2.288666 CGACCTTCTCTCCTCTCTCTG 58.711 57.143 0.00 0.00 0.00 3.35
496 716 1.640670 ACCTTCTCTCCTCTCTCTGCT 59.359 52.381 0.00 0.00 0.00 4.24
497 717 2.849943 ACCTTCTCTCCTCTCTCTGCTA 59.150 50.000 0.00 0.00 0.00 3.49
498 718 3.214328 CCTTCTCTCCTCTCTCTGCTAC 58.786 54.545 0.00 0.00 0.00 3.58
499 719 2.613026 TCTCTCCTCTCTCTGCTACG 57.387 55.000 0.00 0.00 0.00 3.51
500 720 2.112190 TCTCTCCTCTCTCTGCTACGA 58.888 52.381 0.00 0.00 0.00 3.43
501 721 2.159014 TCTCTCCTCTCTCTGCTACGAC 60.159 54.545 0.00 0.00 0.00 4.34
502 722 1.834896 TCTCCTCTCTCTGCTACGACT 59.165 52.381 0.00 0.00 0.00 4.18
503 723 3.032459 TCTCCTCTCTCTGCTACGACTA 58.968 50.000 0.00 0.00 0.00 2.59
504 724 3.128349 CTCCTCTCTCTGCTACGACTAC 58.872 54.545 0.00 0.00 0.00 2.73
505 725 2.767394 TCCTCTCTCTGCTACGACTACT 59.233 50.000 0.00 0.00 0.00 2.57
506 726 3.959449 TCCTCTCTCTGCTACGACTACTA 59.041 47.826 0.00 0.00 0.00 1.82
507 727 4.053295 CCTCTCTCTGCTACGACTACTAC 58.947 52.174 0.00 0.00 0.00 2.73
508 728 4.202182 CCTCTCTCTGCTACGACTACTACT 60.202 50.000 0.00 0.00 0.00 2.57
509 729 4.684877 TCTCTCTGCTACGACTACTACTG 58.315 47.826 0.00 0.00 0.00 2.74
510 730 3.794717 TCTCTGCTACGACTACTACTGG 58.205 50.000 0.00 0.00 0.00 4.00
511 731 3.450096 TCTCTGCTACGACTACTACTGGA 59.550 47.826 0.00 0.00 0.00 3.86
512 732 3.794717 TCTGCTACGACTACTACTGGAG 58.205 50.000 0.00 0.00 0.00 3.86
513 733 3.197333 TCTGCTACGACTACTACTGGAGT 59.803 47.826 0.00 0.00 42.69 3.85
514 734 4.403752 TCTGCTACGACTACTACTGGAGTA 59.596 45.833 0.00 0.00 39.81 2.59
549 769 3.072211 GCGCAACTCCTAACCTTAACTT 58.928 45.455 0.30 0.00 0.00 2.66
550 770 3.120304 GCGCAACTCCTAACCTTAACTTG 60.120 47.826 0.30 0.00 0.00 3.16
551 771 3.435671 CGCAACTCCTAACCTTAACTTGG 59.564 47.826 0.00 0.00 0.00 3.61
552 772 4.395625 GCAACTCCTAACCTTAACTTGGT 58.604 43.478 0.00 0.00 39.91 3.67
553 773 5.554070 GCAACTCCTAACCTTAACTTGGTA 58.446 41.667 0.00 0.00 36.69 3.25
555 775 5.397142 ACTCCTAACCTTAACTTGGTACG 57.603 43.478 0.00 0.00 36.69 3.67
556 776 4.835056 ACTCCTAACCTTAACTTGGTACGT 59.165 41.667 0.00 0.00 36.69 3.57
557 777 6.010219 ACTCCTAACCTTAACTTGGTACGTA 58.990 40.000 0.00 0.00 36.69 3.57
560 780 4.584327 AACCTTAACTTGGTACGTACGT 57.416 40.909 25.98 25.98 36.69 3.57
561 781 4.160736 ACCTTAACTTGGTACGTACGTC 57.839 45.455 26.53 15.93 35.80 4.34
562 782 3.821033 ACCTTAACTTGGTACGTACGTCT 59.179 43.478 26.53 3.46 35.80 4.18
563 783 4.083271 ACCTTAACTTGGTACGTACGTCTC 60.083 45.833 26.53 18.36 35.80 3.36
564 784 2.601481 AACTTGGTACGTACGTCTCG 57.399 50.000 26.53 12.25 0.00 4.04
565 785 0.166814 ACTTGGTACGTACGTCTCGC 59.833 55.000 26.53 13.25 0.00 5.03
566 786 0.522076 CTTGGTACGTACGTCTCGCC 60.522 60.000 26.53 21.29 0.00 5.54
567 787 0.955428 TTGGTACGTACGTCTCGCCT 60.955 55.000 26.53 0.01 0.00 5.52
568 788 1.349973 GGTACGTACGTCTCGCCTC 59.650 63.158 26.53 7.59 0.00 4.70
569 789 1.012889 GTACGTACGTCTCGCCTCG 60.013 63.158 26.53 0.00 0.00 4.63
570 790 2.802667 TACGTACGTCTCGCCTCGC 61.803 63.158 26.53 0.00 0.00 5.03
571 791 4.883300 CGTACGTCTCGCCTCGCC 62.883 72.222 7.22 0.00 0.00 5.54
572 792 3.507009 GTACGTCTCGCCTCGCCT 61.507 66.667 0.00 0.00 0.00 5.52
573 793 3.506096 TACGTCTCGCCTCGCCTG 61.506 66.667 0.00 0.00 0.00 4.85
599 841 2.909006 TCTTCTCTGCTCCACTTCCATT 59.091 45.455 0.00 0.00 0.00 3.16
601 843 3.340814 TCTCTGCTCCACTTCCATTTC 57.659 47.619 0.00 0.00 0.00 2.17
603 845 1.704628 TCTGCTCCACTTCCATTTCCA 59.295 47.619 0.00 0.00 0.00 3.53
604 846 2.309755 TCTGCTCCACTTCCATTTCCAT 59.690 45.455 0.00 0.00 0.00 3.41
606 848 2.309755 TGCTCCACTTCCATTTCCATCT 59.690 45.455 0.00 0.00 0.00 2.90
669 947 2.675348 CGATTGTTGCTCTTCTTCTCCC 59.325 50.000 0.00 0.00 0.00 4.30
670 948 3.618507 CGATTGTTGCTCTTCTTCTCCCT 60.619 47.826 0.00 0.00 0.00 4.20
671 949 3.409026 TTGTTGCTCTTCTTCTCCCTC 57.591 47.619 0.00 0.00 0.00 4.30
678 959 3.333804 CTCTTCTTCTCCCTCAACTTGC 58.666 50.000 0.00 0.00 0.00 4.01
702 983 5.381174 CATGTTTCTTCATGGAGCTTCAA 57.619 39.130 0.00 0.00 40.77 2.69
713 994 3.084039 TGGAGCTTCAAATGTCATGGTC 58.916 45.455 0.00 0.00 0.00 4.02
714 995 3.245016 TGGAGCTTCAAATGTCATGGTCT 60.245 43.478 0.00 0.00 0.00 3.85
717 998 5.065731 GGAGCTTCAAATGTCATGGTCTAAG 59.934 44.000 0.00 0.00 0.00 2.18
718 999 4.397417 AGCTTCAAATGTCATGGTCTAAGC 59.603 41.667 0.00 0.00 37.63 3.09
719 1000 4.439289 GCTTCAAATGTCATGGTCTAAGCC 60.439 45.833 0.00 0.00 32.65 4.35
720 1001 4.574674 TCAAATGTCATGGTCTAAGCCT 57.425 40.909 0.00 0.00 0.00 4.58
729 1018 6.070481 TGTCATGGTCTAAGCCTGTTGTTATA 60.070 38.462 0.00 0.00 0.00 0.98
732 1021 8.052748 TCATGGTCTAAGCCTGTTGTTATATTT 58.947 33.333 0.00 0.00 0.00 1.40
736 1025 7.908601 GGTCTAAGCCTGTTGTTATATTTTTCG 59.091 37.037 0.00 0.00 0.00 3.46
739 1028 7.867445 AAGCCTGTTGTTATATTTTTCGTTG 57.133 32.000 0.00 0.00 0.00 4.10
755 1049 6.607735 TTTCGTTGAGTCTTTCGGTAAAAT 57.392 33.333 0.00 0.00 0.00 1.82
762 1060 5.694910 TGAGTCTTTCGGTAAAATGAGTCAC 59.305 40.000 0.00 0.00 33.88 3.67
775 1073 4.727507 ATGAGTCACGATGTTTAGCTCT 57.272 40.909 0.00 0.00 0.00 4.09
776 1074 3.838120 TGAGTCACGATGTTTAGCTCTG 58.162 45.455 0.00 0.00 0.00 3.35
777 1075 2.600867 GAGTCACGATGTTTAGCTCTGC 59.399 50.000 0.00 0.00 0.00 4.26
778 1076 2.232452 AGTCACGATGTTTAGCTCTGCT 59.768 45.455 0.00 0.00 43.41 4.24
779 1077 2.996621 GTCACGATGTTTAGCTCTGCTT 59.003 45.455 0.00 0.00 40.44 3.91
780 1078 4.082190 AGTCACGATGTTTAGCTCTGCTTA 60.082 41.667 0.00 0.00 40.44 3.09
781 1079 4.031878 GTCACGATGTTTAGCTCTGCTTAC 59.968 45.833 0.00 0.00 40.44 2.34
782 1080 3.000674 CACGATGTTTAGCTCTGCTTACG 60.001 47.826 0.00 0.00 40.44 3.18
783 1081 3.119602 ACGATGTTTAGCTCTGCTTACGA 60.120 43.478 0.00 0.00 40.44 3.43
784 1082 4.045104 CGATGTTTAGCTCTGCTTACGAT 58.955 43.478 0.00 0.00 40.44 3.73
785 1083 5.212934 CGATGTTTAGCTCTGCTTACGATA 58.787 41.667 0.00 0.00 40.44 2.92
786 1084 5.685954 CGATGTTTAGCTCTGCTTACGATAA 59.314 40.000 0.00 0.00 40.44 1.75
825 1123 4.153411 CCCAACACCTACCAAACCAATTA 58.847 43.478 0.00 0.00 0.00 1.40
826 1124 4.219725 CCCAACACCTACCAAACCAATTAG 59.780 45.833 0.00 0.00 0.00 1.73
827 1125 4.830600 CCAACACCTACCAAACCAATTAGT 59.169 41.667 0.00 0.00 0.00 2.24
828 1126 6.005198 CCAACACCTACCAAACCAATTAGTA 58.995 40.000 0.00 0.00 0.00 1.82
829 1127 6.072342 CCAACACCTACCAAACCAATTAGTAC 60.072 42.308 0.00 0.00 0.00 2.73
830 1128 6.443995 ACACCTACCAAACCAATTAGTACT 57.556 37.500 0.00 0.00 0.00 2.73
831 1129 6.470278 ACACCTACCAAACCAATTAGTACTC 58.530 40.000 0.00 0.00 0.00 2.59
832 1130 5.878669 CACCTACCAAACCAATTAGTACTCC 59.121 44.000 0.00 0.00 0.00 3.85
833 1131 5.548836 ACCTACCAAACCAATTAGTACTCCA 59.451 40.000 0.00 0.00 0.00 3.86
834 1132 6.113411 CCTACCAAACCAATTAGTACTCCAG 58.887 44.000 0.00 0.00 0.00 3.86
835 1133 5.836024 ACCAAACCAATTAGTACTCCAGA 57.164 39.130 0.00 0.00 0.00 3.86
836 1134 5.557866 ACCAAACCAATTAGTACTCCAGAC 58.442 41.667 0.00 0.00 0.00 3.51
837 1135 5.309806 ACCAAACCAATTAGTACTCCAGACT 59.690 40.000 0.00 0.00 0.00 3.24
844 1142 7.674772 ACCAATTAGTACTCCAGACTAGTTTCT 59.325 37.037 0.00 0.00 29.68 2.52
871 1172 9.491675 CATGACATAATGAGCTTATCTTCTTCT 57.508 33.333 0.00 0.00 0.00 2.85
873 1174 9.539825 TGACATAATGAGCTTATCTTCTTCTTC 57.460 33.333 0.00 0.00 0.00 2.87
874 1175 9.762933 GACATAATGAGCTTATCTTCTTCTTCT 57.237 33.333 0.00 0.00 0.00 2.85
879 1180 8.947055 ATGAGCTTATCTTCTTCTTCTTCTTC 57.053 34.615 0.00 0.00 0.00 2.87
880 1181 8.133024 TGAGCTTATCTTCTTCTTCTTCTTCT 57.867 34.615 0.00 0.00 0.00 2.85
881 1182 8.592809 TGAGCTTATCTTCTTCTTCTTCTTCTT 58.407 33.333 0.00 0.00 0.00 2.52
882 1183 8.776376 AGCTTATCTTCTTCTTCTTCTTCTTG 57.224 34.615 0.00 0.00 0.00 3.02
909 1210 1.250328 TGCCCTTGCAGAAACATCAG 58.750 50.000 0.00 0.00 44.23 2.90
919 1220 3.077359 CAGAAACATCAGGTTGACCCTC 58.923 50.000 0.00 0.00 43.86 4.30
920 1221 2.982488 AGAAACATCAGGTTGACCCTCT 59.018 45.455 0.00 0.00 43.86 3.69
921 1222 2.867109 AACATCAGGTTGACCCTCTG 57.133 50.000 0.00 0.00 43.86 3.35
922 1223 0.987294 ACATCAGGTTGACCCTCTGG 59.013 55.000 0.00 0.00 43.86 3.86
981 1282 1.145119 GTCTCCTCCACAAAAGGGGTT 59.855 52.381 0.00 0.00 35.71 4.11
982 1283 1.423921 TCTCCTCCACAAAAGGGGTTC 59.576 52.381 0.00 0.00 35.71 3.62
983 1284 0.481128 TCCTCCACAAAAGGGGTTCC 59.519 55.000 0.00 0.00 34.46 3.62
1008 1309 1.217511 CAGCGCTGACATGTCCTCT 59.782 57.895 33.66 11.15 0.00 3.69
1050 1351 1.547901 CCAAGTTTTCTCCACTCCCCC 60.548 57.143 0.00 0.00 0.00 5.40
1052 1353 1.760405 AGTTTTCTCCACTCCCCCAT 58.240 50.000 0.00 0.00 0.00 4.00
1123 1439 1.821332 CCGCCCAAGAAGAGGATGC 60.821 63.158 0.00 0.00 0.00 3.91
1129 1445 4.537433 AGAAGAGGATGCCGCGCC 62.537 66.667 0.00 0.00 0.00 6.53
1276 1616 4.021925 AGCAGTCCCCGTCCAAGC 62.022 66.667 0.00 0.00 0.00 4.01
1412 1752 3.514309 GTGGAGGAGCTCTGGTAAGTAAA 59.486 47.826 14.64 0.00 0.00 2.01
1413 1753 3.514309 TGGAGGAGCTCTGGTAAGTAAAC 59.486 47.826 14.64 0.00 0.00 2.01
1414 1754 3.770388 GGAGGAGCTCTGGTAAGTAAACT 59.230 47.826 14.64 0.00 0.00 2.66
1415 1755 4.954826 GGAGGAGCTCTGGTAAGTAAACTA 59.045 45.833 14.64 0.00 0.00 2.24
1416 1756 5.421374 GGAGGAGCTCTGGTAAGTAAACTAA 59.579 44.000 14.64 0.00 0.00 2.24
1417 1757 6.070938 GGAGGAGCTCTGGTAAGTAAACTAAA 60.071 42.308 14.64 0.00 0.00 1.85
1418 1758 6.699366 AGGAGCTCTGGTAAGTAAACTAAAC 58.301 40.000 14.64 0.00 0.00 2.01
1419 1759 6.269307 AGGAGCTCTGGTAAGTAAACTAAACA 59.731 38.462 14.64 0.00 0.00 2.83
1420 1760 6.368243 GGAGCTCTGGTAAGTAAACTAAACAC 59.632 42.308 14.64 0.00 0.00 3.32
1421 1761 5.924825 AGCTCTGGTAAGTAAACTAAACACG 59.075 40.000 0.00 0.00 0.00 4.49
1422 1762 5.389202 GCTCTGGTAAGTAAACTAAACACGC 60.389 44.000 0.00 0.00 0.00 5.34
1429 1769 2.594529 AAACTAAACACGCGCATCTG 57.405 45.000 5.73 0.00 0.00 2.90
1550 1901 5.096443 ACATCAAGTCCATCTCCTTCTTC 57.904 43.478 0.00 0.00 0.00 2.87
1880 2235 5.727434 ACTGGTAATTACCTTACTTGGTCG 58.273 41.667 30.09 11.31 46.58 4.79
1881 2236 5.088680 TGGTAATTACCTTACTTGGTCGG 57.911 43.478 30.09 0.00 46.58 4.79
1882 2237 4.531732 TGGTAATTACCTTACTTGGTCGGT 59.468 41.667 30.09 0.00 46.58 4.69
1883 2238 5.111989 GGTAATTACCTTACTTGGTCGGTC 58.888 45.833 24.79 0.00 43.10 4.79
1884 2239 3.515330 ATTACCTTACTTGGTCGGTCG 57.485 47.619 0.00 0.00 41.22 4.79
1885 2240 1.909700 TACCTTACTTGGTCGGTCGT 58.090 50.000 0.00 0.00 41.22 4.34
1886 2241 0.316204 ACCTTACTTGGTCGGTCGTG 59.684 55.000 0.00 0.00 34.86 4.35
1887 2242 1.012486 CCTTACTTGGTCGGTCGTGC 61.012 60.000 0.00 0.00 0.00 5.34
1888 2243 0.038526 CTTACTTGGTCGGTCGTGCT 60.039 55.000 0.00 0.00 0.00 4.40
1889 2244 0.038892 TTACTTGGTCGGTCGTGCTC 60.039 55.000 0.00 0.00 0.00 4.26
1890 2245 1.174078 TACTTGGTCGGTCGTGCTCA 61.174 55.000 0.00 0.00 0.00 4.26
1891 2246 1.079819 CTTGGTCGGTCGTGCTCAT 60.080 57.895 0.00 0.00 0.00 2.90
1892 2247 1.078759 CTTGGTCGGTCGTGCTCATC 61.079 60.000 0.00 0.00 0.00 2.92
1893 2248 1.532604 TTGGTCGGTCGTGCTCATCT 61.533 55.000 0.00 0.00 0.00 2.90
1894 2249 1.215647 GGTCGGTCGTGCTCATCTT 59.784 57.895 0.00 0.00 0.00 2.40
1895 2250 0.389948 GGTCGGTCGTGCTCATCTTT 60.390 55.000 0.00 0.00 0.00 2.52
1896 2251 1.429463 GTCGGTCGTGCTCATCTTTT 58.571 50.000 0.00 0.00 0.00 2.27
1897 2252 1.798813 GTCGGTCGTGCTCATCTTTTT 59.201 47.619 0.00 0.00 0.00 1.94
1950 2305 3.128242 GGCTCATCTGAAACATGTTCCTG 59.872 47.826 12.39 3.08 0.00 3.86
1951 2306 3.128242 GCTCATCTGAAACATGTTCCTGG 59.872 47.826 12.39 3.27 0.00 4.45
1952 2307 3.689347 TCATCTGAAACATGTTCCTGGG 58.311 45.455 12.39 0.09 0.00 4.45
1953 2308 2.584835 TCTGAAACATGTTCCTGGGG 57.415 50.000 12.39 0.16 0.00 4.96
1954 2309 1.780309 TCTGAAACATGTTCCTGGGGT 59.220 47.619 12.39 0.00 0.00 4.95
1955 2310 1.888512 CTGAAACATGTTCCTGGGGTG 59.111 52.381 12.39 0.00 0.00 4.61
1956 2311 0.603065 GAAACATGTTCCTGGGGTGC 59.397 55.000 12.39 0.00 0.00 5.01
1957 2312 0.105760 AAACATGTTCCTGGGGTGCA 60.106 50.000 12.39 0.00 0.00 4.57
1960 2315 1.852157 ATGTTCCTGGGGTGCAGGA 60.852 57.895 0.00 0.00 46.22 3.86
1963 2318 2.121963 TCCTGGGGTGCAGGACTT 60.122 61.111 0.00 0.00 43.35 3.01
1989 2366 3.300667 CTGACAGCGCGTTCCTTGC 62.301 63.158 8.43 0.00 0.00 4.01
1990 2367 3.044305 GACAGCGCGTTCCTTGCT 61.044 61.111 8.43 0.00 40.16 3.91
1991 2368 3.016474 GACAGCGCGTTCCTTGCTC 62.016 63.158 8.43 0.00 36.69 4.26
1992 2369 4.139420 CAGCGCGTTCCTTGCTCG 62.139 66.667 8.43 0.00 36.69 5.03
2074 2455 3.084786 AGAAGCAAGCTGTATTCCCAAC 58.915 45.455 0.00 0.00 0.00 3.77
2178 2559 6.218019 TGCTTGTTCAAATTTCCAAGAGATG 58.782 36.000 18.86 0.00 37.14 2.90
2183 2564 9.480053 TTGTTCAAATTTCCAAGAGATGAATTC 57.520 29.630 0.00 0.00 0.00 2.17
2230 2611 0.971447 AGAACGAGAGGGCAGGGTAC 60.971 60.000 0.00 0.00 0.00 3.34
2368 2751 2.161609 GCAGGTACTTGGAAATGTTCCG 59.838 50.000 7.15 0.00 46.91 4.30
2378 2761 4.848562 GGAAATGTTCCGTCCTTTTCTT 57.151 40.909 0.00 0.00 40.59 2.52
2379 2762 4.795268 GGAAATGTTCCGTCCTTTTCTTC 58.205 43.478 0.00 0.00 40.59 2.87
2380 2763 4.519350 GGAAATGTTCCGTCCTTTTCTTCT 59.481 41.667 0.00 0.00 40.59 2.85
2381 2764 5.334957 GGAAATGTTCCGTCCTTTTCTTCTC 60.335 44.000 0.00 0.00 40.59 2.87
2382 2765 4.625607 ATGTTCCGTCCTTTTCTTCTCT 57.374 40.909 0.00 0.00 0.00 3.10
2383 2766 3.991367 TGTTCCGTCCTTTTCTTCTCTC 58.009 45.455 0.00 0.00 0.00 3.20
2420 2819 5.973651 CAGTCGTGCATGATAAGTACATT 57.026 39.130 12.67 0.00 0.00 2.71
2421 2820 5.967469 CAGTCGTGCATGATAAGTACATTC 58.033 41.667 12.67 0.00 0.00 2.67
2424 2823 5.520288 GTCGTGCATGATAAGTACATTCTGT 59.480 40.000 12.67 0.00 0.00 3.41
2502 2901 2.282180 TCAAGTTTCCTGGCCGGC 60.282 61.111 21.18 21.18 0.00 6.13
2586 2985 4.400251 AGCGGCCACTACCTCCCT 62.400 66.667 2.24 0.00 0.00 4.20
2716 3116 5.842328 TCGTCTTAATAACCACCAGGGATAT 59.158 40.000 0.00 0.00 41.15 1.63
2737 3137 8.281194 GGATATCATATCTGATAAGCATTTGCG 58.719 37.037 4.83 0.00 45.20 4.85
2793 3193 4.091509 CGAGTACCCATCGTTCAAAAAGAG 59.908 45.833 0.00 0.00 35.48 2.85
2820 3220 2.093447 ACGAGCCTACTGAAATGGAAGG 60.093 50.000 0.00 0.00 0.00 3.46
2822 3222 3.739519 CGAGCCTACTGAAATGGAAGGAG 60.740 52.174 0.00 0.00 0.00 3.69
2844 3244 1.530013 GACGAGAAACCCACCGAGGA 61.530 60.000 0.00 0.00 41.22 3.71
2845 3245 1.215647 CGAGAAACCCACCGAGGAG 59.784 63.158 0.00 0.00 41.22 3.69
3085 3494 3.681835 GTGGTGCCGTCTCCGAGT 61.682 66.667 0.00 0.00 35.63 4.18
3229 3638 1.001641 GAGGCAGCAGTTCATGGGT 60.002 57.895 0.00 0.00 0.00 4.51
3235 3644 2.863704 GCAGCAGTTCATGGGTTTTCAC 60.864 50.000 0.00 0.00 0.00 3.18
3242 3651 0.318614 CATGGGTTTTCACACACCGC 60.319 55.000 0.00 0.00 39.93 5.68
3377 3794 9.627123 AGTTATTATAGCTAGCCTAGATCAGAG 57.373 37.037 12.13 0.00 0.00 3.35
3378 3795 9.621629 GTTATTATAGCTAGCCTAGATCAGAGA 57.378 37.037 12.13 0.00 0.00 3.10
3381 3798 9.793259 ATTATAGCTAGCCTAGATCAGAGATAC 57.207 37.037 12.13 0.00 0.00 2.24
3409 3826 7.224557 ACTCACAATTTTGTTTCTTATGGTTGC 59.775 33.333 0.00 0.00 39.91 4.17
3441 3863 6.147328 GGTTCTGTGTCACCATTCTTTAGTAC 59.853 42.308 0.00 0.00 32.74 2.73
3442 3864 6.665992 TCTGTGTCACCATTCTTTAGTACT 57.334 37.500 0.00 0.00 0.00 2.73
3443 3865 7.770366 TCTGTGTCACCATTCTTTAGTACTA 57.230 36.000 0.00 0.00 0.00 1.82
3444 3866 8.362464 TCTGTGTCACCATTCTTTAGTACTAT 57.638 34.615 2.79 0.00 0.00 2.12
3445 3867 8.251026 TCTGTGTCACCATTCTTTAGTACTATG 58.749 37.037 2.79 0.00 0.00 2.23
3446 3868 7.903145 TGTGTCACCATTCTTTAGTACTATGT 58.097 34.615 2.79 0.00 0.00 2.29
3447 3869 8.372459 TGTGTCACCATTCTTTAGTACTATGTT 58.628 33.333 2.79 0.00 0.00 2.71
3448 3870 8.870879 GTGTCACCATTCTTTAGTACTATGTTC 58.129 37.037 2.79 0.00 0.00 3.18
3449 3871 8.590204 TGTCACCATTCTTTAGTACTATGTTCA 58.410 33.333 2.79 0.00 0.00 3.18
3484 3906 4.803426 CCTGAGGTGCGTCGGCTC 62.803 72.222 0.00 0.00 40.82 4.70
3569 4022 5.988287 AGGGTTGTTTTGTTCATCATGTTT 58.012 33.333 0.00 0.00 0.00 2.83
3570 4023 6.413892 AGGGTTGTTTTGTTCATCATGTTTT 58.586 32.000 0.00 0.00 0.00 2.43
3571 4024 7.560368 AGGGTTGTTTTGTTCATCATGTTTTA 58.440 30.769 0.00 0.00 0.00 1.52
3572 4025 8.210265 AGGGTTGTTTTGTTCATCATGTTTTAT 58.790 29.630 0.00 0.00 0.00 1.40
3574 4027 9.649024 GGTTGTTTTGTTCATCATGTTTTATTG 57.351 29.630 0.00 0.00 0.00 1.90
3620 4100 5.680151 GCAGGAATGTAGGACACTCTCTAAC 60.680 48.000 0.00 0.00 0.00 2.34
3647 4127 4.811555 TCGATTGGAAGAACAACAACAG 57.188 40.909 0.00 0.00 32.39 3.16
3648 4128 3.003275 TCGATTGGAAGAACAACAACAGC 59.997 43.478 0.00 0.00 32.39 4.40
3649 4129 3.243035 CGATTGGAAGAACAACAACAGCA 60.243 43.478 0.00 0.00 32.39 4.41
3650 4130 4.681744 GATTGGAAGAACAACAACAGCAA 58.318 39.130 0.00 0.00 32.39 3.91
3651 4131 3.502191 TGGAAGAACAACAACAGCAAC 57.498 42.857 0.00 0.00 0.00 4.17
3725 4206 5.456921 TGGATGAAAGCCCTCTAAGATTT 57.543 39.130 0.00 0.00 46.54 2.17
3728 4209 6.069673 TGGATGAAAGCCCTCTAAGATTTGTA 60.070 38.462 0.00 0.00 46.54 2.41
3738 4219 8.237949 GCCCTCTAAGATTTGTACTTTCTTTTC 58.762 37.037 9.67 0.00 32.28 2.29
3740 4221 9.284968 CCTCTAAGATTTGTACTTTCTTTTCCA 57.715 33.333 9.67 0.00 32.28 3.53
3744 4225 8.593492 AAGATTTGTACTTTCTTTTCCAATGC 57.407 30.769 0.00 0.00 0.00 3.56
3745 4226 6.863126 AGATTTGTACTTTCTTTTCCAATGCG 59.137 34.615 0.00 0.00 0.00 4.73
3746 4227 5.759506 TTGTACTTTCTTTTCCAATGCGA 57.240 34.783 0.00 0.00 0.00 5.10
3747 4228 5.356882 TGTACTTTCTTTTCCAATGCGAG 57.643 39.130 0.00 0.00 0.00 5.03
3748 4229 5.060506 TGTACTTTCTTTTCCAATGCGAGA 58.939 37.500 0.00 0.00 0.00 4.04
3750 4231 5.712152 ACTTTCTTTTCCAATGCGAGATT 57.288 34.783 0.00 0.00 0.00 2.40
3751 4232 5.464168 ACTTTCTTTTCCAATGCGAGATTG 58.536 37.500 0.00 0.00 0.00 2.67
3752 4233 5.010012 ACTTTCTTTTCCAATGCGAGATTGT 59.990 36.000 6.79 0.00 0.00 2.71
3764 4245 4.489810 TGCGAGATTGTGTTGTTGTTTTT 58.510 34.783 0.00 0.00 0.00 1.94
3804 4297 1.548081 TGTTGCCTGCAATGCATACT 58.452 45.000 8.91 0.00 37.31 2.12
3805 4298 2.720915 TGTTGCCTGCAATGCATACTA 58.279 42.857 8.91 0.00 37.31 1.82
3806 4299 2.684374 TGTTGCCTGCAATGCATACTAG 59.316 45.455 8.91 0.00 37.31 2.57
3812 4305 4.946157 GCCTGCAATGCATACTAGGATAAT 59.054 41.667 20.95 0.00 38.13 1.28
3820 4313 5.798132 TGCATACTAGGATAATTGCAGAGG 58.202 41.667 0.00 0.00 35.36 3.69
3833 4326 2.802787 GCAGAGGCATGTATACGACT 57.197 50.000 0.00 0.00 40.72 4.18
3837 4330 2.035193 AGAGGCATGTATACGACTGCAG 59.965 50.000 13.48 13.48 35.26 4.41
3918 4412 0.840617 TACCACACAACTGCAAGGGA 59.159 50.000 0.00 0.00 39.30 4.20
3954 4448 2.126502 CGGGTGGCGTTGCATTTC 60.127 61.111 0.00 0.00 0.00 2.17
4025 4521 4.695791 AAGACCCACCCCTCCCCC 62.696 72.222 0.00 0.00 0.00 5.40
4030 4850 3.707189 CCACCCCTCCCCCTAGGT 61.707 72.222 8.29 0.00 34.56 3.08
4191 5012 1.334869 GGGATGTCGGTCAATTGCATC 59.665 52.381 12.14 12.14 36.25 3.91
4195 5016 0.652592 GTCGGTCAATTGCATCTCCG 59.347 55.000 0.00 9.48 39.40 4.63
4237 5058 5.500771 GCACATGACATACATACGACACAAG 60.501 44.000 0.00 0.00 37.46 3.16
4257 5078 1.883926 GTGCAAGGGGTAAAACACGAT 59.116 47.619 0.00 0.00 0.00 3.73
4276 5097 1.462731 TTGCAATCAGTGGTGGTGCC 61.463 55.000 0.00 0.00 35.41 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.677875 GACCACGTACCCCTCCGT 60.678 66.667 0.00 0.00 37.90 4.69
1 2 2.677524 TGACCACGTACCCCTCCG 60.678 66.667 0.00 0.00 0.00 4.63
2 3 3.015312 GCTGACCACGTACCCCTCC 62.015 68.421 0.00 0.00 0.00 4.30
3 4 2.577593 GCTGACCACGTACCCCTC 59.422 66.667 0.00 0.00 0.00 4.30
4 5 3.001406 GGCTGACCACGTACCCCT 61.001 66.667 0.00 0.00 35.26 4.79
5 6 3.310860 CTGGCTGACCACGTACCCC 62.311 68.421 0.00 0.00 42.67 4.95
6 7 2.264794 CTGGCTGACCACGTACCC 59.735 66.667 0.00 0.00 42.67 3.69
7 8 1.374252 CACTGGCTGACCACGTACC 60.374 63.158 0.00 0.00 42.67 3.34
14 15 3.068873 CCTACTTATCTCACTGGCTGACC 59.931 52.174 0.00 0.00 0.00 4.02
17 18 3.320541 CCTCCTACTTATCTCACTGGCTG 59.679 52.174 0.00 0.00 0.00 4.85
31 32 5.681639 ACGCTAATTAATTTGCCTCCTACT 58.318 37.500 23.05 1.41 35.58 2.57
35 37 4.574828 TGAGACGCTAATTAATTTGCCTCC 59.425 41.667 23.88 17.40 35.58 4.30
38 40 8.905702 CATTATTGAGACGCTAATTAATTTGCC 58.094 33.333 23.05 13.41 35.58 4.52
75 237 2.124151 CTGCCACCCACCCATAGC 60.124 66.667 0.00 0.00 0.00 2.97
82 244 0.764890 TATCTATGCCTGCCACCCAC 59.235 55.000 0.00 0.00 0.00 4.61
86 248 1.805869 CTGCTATCTATGCCTGCCAC 58.194 55.000 0.00 0.00 0.00 5.01
87 249 0.035881 GCTGCTATCTATGCCTGCCA 59.964 55.000 0.00 0.00 0.00 4.92
152 315 6.718213 GCTTCTGCTTCGGAATTTTACCGG 62.718 50.000 0.00 0.00 42.30 5.28
153 316 3.727970 GCTTCTGCTTCGGAATTTTACCG 60.728 47.826 0.00 0.00 42.83 4.02
154 317 3.727970 CGCTTCTGCTTCGGAATTTTACC 60.728 47.826 0.00 0.00 36.97 2.85
155 318 3.417185 CGCTTCTGCTTCGGAATTTTAC 58.583 45.455 0.00 0.00 36.97 2.01
156 319 2.159572 GCGCTTCTGCTTCGGAATTTTA 60.160 45.455 0.00 0.00 36.97 1.52
157 320 1.401539 GCGCTTCTGCTTCGGAATTTT 60.402 47.619 0.00 0.00 36.97 1.82
158 321 0.169009 GCGCTTCTGCTTCGGAATTT 59.831 50.000 0.00 0.00 36.97 1.82
190 358 1.671704 AGCGTCTTCTCGTCTCCGT 60.672 57.895 0.00 0.00 35.01 4.69
192 360 0.241481 AACAGCGTCTTCTCGTCTCC 59.759 55.000 0.00 0.00 0.00 3.71
193 361 2.053282 AAACAGCGTCTTCTCGTCTC 57.947 50.000 0.00 0.00 0.00 3.36
194 362 2.034812 AGAAAACAGCGTCTTCTCGTCT 59.965 45.455 0.00 0.00 0.00 4.18
195 363 2.395654 AGAAAACAGCGTCTTCTCGTC 58.604 47.619 0.00 0.00 0.00 4.20
196 364 2.510768 AGAAAACAGCGTCTTCTCGT 57.489 45.000 0.00 0.00 0.00 4.18
197 365 2.096713 CCAAGAAAACAGCGTCTTCTCG 60.097 50.000 0.00 0.00 31.66 4.04
198 366 3.059529 GTCCAAGAAAACAGCGTCTTCTC 60.060 47.826 0.00 0.00 31.66 2.87
199 367 2.872858 GTCCAAGAAAACAGCGTCTTCT 59.127 45.455 0.00 0.00 31.66 2.85
221 389 1.201769 CCGCGTTTAATGACAGTGACG 60.202 52.381 4.92 8.61 0.00 4.35
225 393 0.604243 TGGCCGCGTTTAATGACAGT 60.604 50.000 4.92 0.00 0.00 3.55
272 480 7.434602 GCTACGTACTACTCTATTTTCCTTTGG 59.565 40.741 0.00 0.00 0.00 3.28
273 481 7.972277 TGCTACGTACTACTCTATTTTCCTTTG 59.028 37.037 0.00 0.00 0.00 2.77
284 492 5.447010 CGCTTAAACTGCTACGTACTACTCT 60.447 44.000 0.00 0.00 0.00 3.24
285 493 4.727655 CGCTTAAACTGCTACGTACTACTC 59.272 45.833 0.00 0.00 0.00 2.59
286 494 4.154918 ACGCTTAAACTGCTACGTACTACT 59.845 41.667 0.00 0.00 31.03 2.57
287 495 4.261581 CACGCTTAAACTGCTACGTACTAC 59.738 45.833 0.00 0.00 31.70 2.73
288 496 4.406069 CACGCTTAAACTGCTACGTACTA 58.594 43.478 0.00 0.00 31.70 1.82
289 497 3.240069 CACGCTTAAACTGCTACGTACT 58.760 45.455 0.00 0.00 31.70 2.73
290 498 2.343544 CCACGCTTAAACTGCTACGTAC 59.656 50.000 0.00 0.00 31.70 3.67
291 499 2.598589 CCACGCTTAAACTGCTACGTA 58.401 47.619 0.00 0.00 31.70 3.57
292 500 1.425412 CCACGCTTAAACTGCTACGT 58.575 50.000 0.00 0.00 0.00 3.57
293 501 0.094730 GCCACGCTTAAACTGCTACG 59.905 55.000 0.00 0.00 0.00 3.51
294 502 1.153353 TGCCACGCTTAAACTGCTAC 58.847 50.000 0.00 0.00 0.00 3.58
333 545 0.100146 GACGAAGGATCCGCGTAAGT 59.900 55.000 27.77 14.54 38.51 2.24
335 547 0.379669 GAGACGAAGGATCCGCGTAA 59.620 55.000 27.77 0.00 38.51 3.18
413 625 4.937620 GTCCAAGTCATTAGATGCACAAGA 59.062 41.667 0.00 0.00 0.00 3.02
414 626 4.940046 AGTCCAAGTCATTAGATGCACAAG 59.060 41.667 0.00 0.00 0.00 3.16
415 627 4.910195 AGTCCAAGTCATTAGATGCACAA 58.090 39.130 0.00 0.00 0.00 3.33
416 628 4.507710 GAGTCCAAGTCATTAGATGCACA 58.492 43.478 0.00 0.00 0.00 4.57
419 631 3.553511 CACGAGTCCAAGTCATTAGATGC 59.446 47.826 0.00 0.00 0.00 3.91
421 633 3.449018 AGCACGAGTCCAAGTCATTAGAT 59.551 43.478 0.00 0.00 0.00 1.98
422 634 2.826128 AGCACGAGTCCAAGTCATTAGA 59.174 45.455 0.00 0.00 0.00 2.10
425 637 1.338200 GGAGCACGAGTCCAAGTCATT 60.338 52.381 0.00 0.00 33.84 2.57
426 638 0.247736 GGAGCACGAGTCCAAGTCAT 59.752 55.000 0.00 0.00 33.84 3.06
427 639 1.666011 GGAGCACGAGTCCAAGTCA 59.334 57.895 0.00 0.00 33.84 3.41
428 640 1.079750 GGGAGCACGAGTCCAAGTC 60.080 63.158 0.00 0.00 35.57 3.01
466 686 3.491652 GAGAAGGTCGCAAGCGGC 61.492 66.667 14.98 13.08 44.06 6.53
469 689 0.459411 GAGGAGAGAAGGTCGCAAGC 60.459 60.000 0.00 0.00 37.18 4.01
471 691 1.178276 GAGAGGAGAGAAGGTCGCAA 58.822 55.000 0.00 0.00 0.00 4.85
472 692 0.329931 AGAGAGGAGAGAAGGTCGCA 59.670 55.000 0.00 0.00 0.00 5.10
473 693 1.021968 GAGAGAGGAGAGAAGGTCGC 58.978 60.000 0.00 0.00 0.00 5.19
475 695 2.024414 GCAGAGAGAGGAGAGAAGGTC 58.976 57.143 0.00 0.00 0.00 3.85
476 696 1.640670 AGCAGAGAGAGGAGAGAAGGT 59.359 52.381 0.00 0.00 0.00 3.50
478 698 2.872245 CGTAGCAGAGAGAGGAGAGAAG 59.128 54.545 0.00 0.00 0.00 2.85
479 699 2.502130 TCGTAGCAGAGAGAGGAGAGAA 59.498 50.000 0.00 0.00 0.00 2.87
480 700 2.112190 TCGTAGCAGAGAGAGGAGAGA 58.888 52.381 0.00 0.00 0.00 3.10
482 702 1.834896 AGTCGTAGCAGAGAGAGGAGA 59.165 52.381 0.00 0.00 0.00 3.71
483 703 2.325583 AGTCGTAGCAGAGAGAGGAG 57.674 55.000 0.00 0.00 0.00 3.69
484 704 2.767394 AGTAGTCGTAGCAGAGAGAGGA 59.233 50.000 0.00 0.00 0.00 3.71
485 705 3.188159 AGTAGTCGTAGCAGAGAGAGG 57.812 52.381 0.00 0.00 0.00 3.69
487 707 4.441773 CCAGTAGTAGTCGTAGCAGAGAGA 60.442 50.000 0.00 0.00 0.00 3.10
488 708 3.805422 CCAGTAGTAGTCGTAGCAGAGAG 59.195 52.174 0.00 0.00 0.00 3.20
489 709 3.450096 TCCAGTAGTAGTCGTAGCAGAGA 59.550 47.826 0.00 0.00 0.00 3.10
493 713 3.623906 ACTCCAGTAGTAGTCGTAGCA 57.376 47.619 0.00 0.00 36.36 3.49
505 725 7.040494 CGCAGCTATATACTACTACTCCAGTA 58.960 42.308 0.00 0.00 38.80 2.74
506 726 5.875910 CGCAGCTATATACTACTACTCCAGT 59.124 44.000 0.00 0.00 41.62 4.00
507 727 6.352682 CGCAGCTATATACTACTACTCCAG 57.647 45.833 0.00 0.00 0.00 3.86
549 769 1.361668 GAGGCGAGACGTACGTACCA 61.362 60.000 22.87 0.00 0.00 3.25
550 770 1.349973 GAGGCGAGACGTACGTACC 59.650 63.158 22.87 19.28 0.00 3.34
551 771 1.012889 CGAGGCGAGACGTACGTAC 60.013 63.158 22.87 15.90 0.00 3.67
552 772 2.802667 GCGAGGCGAGACGTACGTA 61.803 63.158 22.87 0.00 0.00 3.57
553 773 4.157958 GCGAGGCGAGACGTACGT 62.158 66.667 23.04 23.04 0.00 3.57
555 775 3.507009 AGGCGAGGCGAGACGTAC 61.507 66.667 0.00 0.00 0.00 3.67
556 776 3.506096 CAGGCGAGGCGAGACGTA 61.506 66.667 0.00 0.00 0.00 3.57
564 784 3.731653 GAAGAGGAGCAGGCGAGGC 62.732 68.421 0.00 0.00 0.00 4.70
565 785 2.015227 GAGAAGAGGAGCAGGCGAGG 62.015 65.000 0.00 0.00 0.00 4.63
566 786 1.037030 AGAGAAGAGGAGCAGGCGAG 61.037 60.000 0.00 0.00 0.00 5.03
567 787 1.000270 AGAGAAGAGGAGCAGGCGA 60.000 57.895 0.00 0.00 0.00 5.54
568 788 1.141449 CAGAGAAGAGGAGCAGGCG 59.859 63.158 0.00 0.00 0.00 5.52
569 789 1.153389 GCAGAGAAGAGGAGCAGGC 60.153 63.158 0.00 0.00 0.00 4.85
570 790 0.461135 GAGCAGAGAAGAGGAGCAGG 59.539 60.000 0.00 0.00 0.00 4.85
571 791 0.461135 GGAGCAGAGAAGAGGAGCAG 59.539 60.000 0.00 0.00 0.00 4.24
572 792 0.251967 TGGAGCAGAGAAGAGGAGCA 60.252 55.000 0.00 0.00 0.00 4.26
573 793 0.175531 GTGGAGCAGAGAAGAGGAGC 59.824 60.000 0.00 0.00 0.00 4.70
580 822 3.560025 GGAAATGGAAGTGGAGCAGAGAA 60.560 47.826 0.00 0.00 0.00 2.87
601 843 4.962836 GATGGGCGGGGCAGATGG 62.963 72.222 0.00 0.00 0.00 3.51
669 947 3.318839 TGAAGAAACATGGGCAAGTTGAG 59.681 43.478 7.16 0.00 0.00 3.02
670 948 3.295093 TGAAGAAACATGGGCAAGTTGA 58.705 40.909 7.16 0.00 0.00 3.18
671 949 3.731652 TGAAGAAACATGGGCAAGTTG 57.268 42.857 0.00 0.00 0.00 3.16
700 981 4.012374 ACAGGCTTAGACCATGACATTTG 58.988 43.478 0.00 0.00 0.00 2.32
701 982 4.307032 ACAGGCTTAGACCATGACATTT 57.693 40.909 0.00 0.00 0.00 2.32
702 983 4.012374 CAACAGGCTTAGACCATGACATT 58.988 43.478 0.00 0.00 0.00 2.71
713 994 9.061610 CAACGAAAAATATAACAACAGGCTTAG 57.938 33.333 0.00 0.00 0.00 2.18
714 995 8.784994 TCAACGAAAAATATAACAACAGGCTTA 58.215 29.630 0.00 0.00 0.00 3.09
717 998 7.081976 ACTCAACGAAAAATATAACAACAGGC 58.918 34.615 0.00 0.00 0.00 4.85
718 999 8.504005 AGACTCAACGAAAAATATAACAACAGG 58.496 33.333 0.00 0.00 0.00 4.00
719 1000 9.878599 AAGACTCAACGAAAAATATAACAACAG 57.121 29.630 0.00 0.00 0.00 3.16
729 1018 6.607735 TTACCGAAAGACTCAACGAAAAAT 57.392 33.333 0.00 0.00 0.00 1.82
732 1021 6.258287 TCATTTTACCGAAAGACTCAACGAAA 59.742 34.615 0.00 0.00 0.00 3.46
736 1025 6.202188 TGACTCATTTTACCGAAAGACTCAAC 59.798 38.462 0.00 0.00 0.00 3.18
739 1028 5.164080 CGTGACTCATTTTACCGAAAGACTC 60.164 44.000 0.00 0.00 0.00 3.36
755 1049 3.838120 CAGAGCTAAACATCGTGACTCA 58.162 45.455 0.00 0.00 0.00 3.41
762 1060 3.435566 TCGTAAGCAGAGCTAAACATCG 58.564 45.455 0.00 0.00 38.25 3.84
775 1073 1.207089 AGCACAGCCTTATCGTAAGCA 59.793 47.619 0.00 0.00 37.18 3.91
776 1074 1.941325 AGCACAGCCTTATCGTAAGC 58.059 50.000 0.00 0.00 37.18 3.09
777 1075 3.932710 TGAAAGCACAGCCTTATCGTAAG 59.067 43.478 0.00 0.00 0.00 2.34
778 1076 3.932822 TGAAAGCACAGCCTTATCGTAA 58.067 40.909 0.00 0.00 0.00 3.18
779 1077 3.603158 TGAAAGCACAGCCTTATCGTA 57.397 42.857 0.00 0.00 0.00 3.43
780 1078 2.472695 TGAAAGCACAGCCTTATCGT 57.527 45.000 0.00 0.00 0.00 3.73
781 1079 4.260784 GGTTATGAAAGCACAGCCTTATCG 60.261 45.833 0.00 0.00 33.20 2.92
782 1080 4.036852 GGGTTATGAAAGCACAGCCTTATC 59.963 45.833 0.00 0.00 34.70 1.75
783 1081 3.954258 GGGTTATGAAAGCACAGCCTTAT 59.046 43.478 0.00 0.00 34.70 1.73
784 1082 3.245087 TGGGTTATGAAAGCACAGCCTTA 60.245 43.478 0.00 0.00 34.70 2.69
785 1083 2.171003 GGGTTATGAAAGCACAGCCTT 58.829 47.619 0.00 0.00 34.70 4.35
786 1084 1.075374 TGGGTTATGAAAGCACAGCCT 59.925 47.619 0.00 0.00 34.70 4.58
825 1123 6.376018 GTCATGAGAAACTAGTCTGGAGTACT 59.624 42.308 0.00 0.00 0.00 2.73
826 1124 6.151312 TGTCATGAGAAACTAGTCTGGAGTAC 59.849 42.308 0.00 0.00 0.00 2.73
827 1125 6.246163 TGTCATGAGAAACTAGTCTGGAGTA 58.754 40.000 0.00 0.00 0.00 2.59
828 1126 5.080337 TGTCATGAGAAACTAGTCTGGAGT 58.920 41.667 0.00 0.00 0.00 3.85
829 1127 5.651387 TGTCATGAGAAACTAGTCTGGAG 57.349 43.478 0.00 0.00 0.00 3.86
830 1128 7.718334 TTATGTCATGAGAAACTAGTCTGGA 57.282 36.000 0.00 0.00 0.00 3.86
831 1129 8.200120 TCATTATGTCATGAGAAACTAGTCTGG 58.800 37.037 0.00 0.00 0.00 3.86
844 1142 9.486497 GAAGAAGATAAGCTCATTATGTCATGA 57.514 33.333 0.00 0.00 34.10 3.07
871 1172 4.037923 GGGCAAATCACACAAGAAGAAGAA 59.962 41.667 0.00 0.00 0.00 2.52
872 1173 3.569701 GGGCAAATCACACAAGAAGAAGA 59.430 43.478 0.00 0.00 0.00 2.87
873 1174 3.571401 AGGGCAAATCACACAAGAAGAAG 59.429 43.478 0.00 0.00 0.00 2.85
874 1175 3.565307 AGGGCAAATCACACAAGAAGAA 58.435 40.909 0.00 0.00 0.00 2.52
875 1176 3.228188 AGGGCAAATCACACAAGAAGA 57.772 42.857 0.00 0.00 0.00 2.87
876 1177 3.645884 CAAGGGCAAATCACACAAGAAG 58.354 45.455 0.00 0.00 0.00 2.85
877 1178 2.224018 GCAAGGGCAAATCACACAAGAA 60.224 45.455 0.00 0.00 40.72 2.52
878 1179 1.340889 GCAAGGGCAAATCACACAAGA 59.659 47.619 0.00 0.00 40.72 3.02
879 1180 1.787012 GCAAGGGCAAATCACACAAG 58.213 50.000 0.00 0.00 40.72 3.16
880 1181 3.984838 GCAAGGGCAAATCACACAA 57.015 47.368 0.00 0.00 40.72 3.33
909 1210 2.352805 CCAGCCAGAGGGTCAACC 59.647 66.667 0.00 0.00 40.67 3.77
1135 1460 0.037882 TTGAAGCTGAGCGACCTCTG 60.038 55.000 0.00 0.00 38.93 3.35
1412 1752 0.948623 TGCAGATGCGCGTGTTTAGT 60.949 50.000 6.97 0.00 45.83 2.24
1413 1753 0.374758 ATGCAGATGCGCGTGTTTAG 59.625 50.000 6.97 0.00 45.83 1.85
1414 1754 0.373370 GATGCAGATGCGCGTGTTTA 59.627 50.000 6.97 0.00 45.83 2.01
1415 1755 1.135315 GATGCAGATGCGCGTGTTT 59.865 52.632 6.97 0.00 45.83 2.83
1416 1756 1.742880 AGATGCAGATGCGCGTGTT 60.743 52.632 6.97 0.00 45.83 3.32
1417 1757 2.125391 AGATGCAGATGCGCGTGT 60.125 55.556 6.97 0.00 45.83 4.49
1418 1758 2.323447 CAGATGCAGATGCGCGTG 59.677 61.111 6.97 2.79 45.83 5.34
1419 1759 3.570638 GCAGATGCAGATGCGCGT 61.571 61.111 8.43 0.00 45.83 6.01
1474 1816 7.010091 ACCTGAATGAACGTTGAAATTGTTTTC 59.990 33.333 5.00 0.00 41.39 2.29
1550 1901 3.997064 CTCCTGCTTGGCCTCGTCG 62.997 68.421 3.32 0.00 35.26 5.12
1628 1979 0.673956 GGGCCTTCTCGTCTTTGGAC 60.674 60.000 0.84 0.00 38.97 4.02
1745 2096 7.995289 TGAAGAAGCACAAAGATTTTGACTTA 58.005 30.769 8.41 0.00 0.00 2.24
1763 2114 1.002366 CGCGGGTCAATCTGAAGAAG 58.998 55.000 0.00 0.00 0.00 2.85
1898 2253 7.661127 CATCATTCTGATGCTTTTCCAAAAA 57.339 32.000 4.33 0.00 46.37 1.94
1911 2266 3.244318 TGAGCCGTATGCATCATTCTGAT 60.244 43.478 0.19 0.00 44.83 2.90
1912 2267 2.102925 TGAGCCGTATGCATCATTCTGA 59.897 45.455 0.19 0.00 44.83 3.27
1913 2268 2.486918 TGAGCCGTATGCATCATTCTG 58.513 47.619 0.19 0.00 44.83 3.02
1914 2269 2.916702 TGAGCCGTATGCATCATTCT 57.083 45.000 0.19 0.00 44.83 2.40
1915 2270 3.124806 CAGATGAGCCGTATGCATCATTC 59.875 47.826 0.19 0.00 44.83 2.67
1916 2271 3.072211 CAGATGAGCCGTATGCATCATT 58.928 45.455 0.19 0.00 44.83 2.57
1917 2272 2.301009 TCAGATGAGCCGTATGCATCAT 59.699 45.455 0.19 0.00 44.83 2.45
1918 2273 1.688197 TCAGATGAGCCGTATGCATCA 59.312 47.619 0.19 0.00 44.83 3.07
1919 2274 2.445565 TCAGATGAGCCGTATGCATC 57.554 50.000 0.19 0.00 44.83 3.91
1920 2275 2.874701 GTTTCAGATGAGCCGTATGCAT 59.125 45.455 3.79 3.79 44.83 3.96
1921 2276 2.279741 GTTTCAGATGAGCCGTATGCA 58.720 47.619 0.00 0.00 44.83 3.96
1922 2277 2.279741 TGTTTCAGATGAGCCGTATGC 58.720 47.619 0.00 0.00 41.71 3.14
1923 2278 3.873361 ACATGTTTCAGATGAGCCGTATG 59.127 43.478 0.00 0.00 0.00 2.39
1924 2279 4.142609 ACATGTTTCAGATGAGCCGTAT 57.857 40.909 0.00 0.00 0.00 3.06
1925 2280 3.610040 ACATGTTTCAGATGAGCCGTA 57.390 42.857 0.00 0.00 0.00 4.02
1926 2281 2.479566 ACATGTTTCAGATGAGCCGT 57.520 45.000 0.00 0.00 0.00 5.68
1927 2282 2.096496 GGAACATGTTTCAGATGAGCCG 59.904 50.000 13.36 0.00 0.00 5.52
1928 2283 3.128242 CAGGAACATGTTTCAGATGAGCC 59.872 47.826 19.13 9.09 0.00 4.70
1957 2312 1.554160 CTGTCAGGATCAGCAAGTCCT 59.446 52.381 0.00 0.00 45.60 3.85
1965 2320 1.416813 GAACGCGCTGTCAGGATCAG 61.417 60.000 5.73 0.00 36.18 2.90
1989 2366 4.215399 TCCAGCCTGAAAATACAAAACGAG 59.785 41.667 0.00 0.00 0.00 4.18
1990 2367 4.138290 TCCAGCCTGAAAATACAAAACGA 58.862 39.130 0.00 0.00 0.00 3.85
1991 2368 4.497473 TCCAGCCTGAAAATACAAAACG 57.503 40.909 0.00 0.00 0.00 3.60
1992 2369 6.912591 CGATATCCAGCCTGAAAATACAAAAC 59.087 38.462 0.00 0.00 0.00 2.43
2052 2433 2.715046 TGGGAATACAGCTTGCTTCTG 58.285 47.619 0.00 0.00 37.56 3.02
2074 2455 3.637229 ACTGGTCCGAGGTACATAATCAG 59.363 47.826 0.00 0.00 0.00 2.90
2183 2564 9.218359 CGATTCAAGTAACATTCAAATCAGATG 57.782 33.333 0.00 0.00 0.00 2.90
2230 2611 2.009774 CCTTGCTCCACAATAACCTCG 58.990 52.381 0.00 0.00 37.72 4.63
2368 2751 6.884836 ACTAGAGAGAGAGAGAAGAAAAGGAC 59.115 42.308 0.00 0.00 0.00 3.85
2378 2761 6.308015 ACTGCTTAACTAGAGAGAGAGAGA 57.692 41.667 0.00 0.00 0.00 3.10
2379 2762 5.234329 CGACTGCTTAACTAGAGAGAGAGAG 59.766 48.000 0.00 0.00 0.00 3.20
2380 2763 5.113383 CGACTGCTTAACTAGAGAGAGAGA 58.887 45.833 0.00 0.00 0.00 3.10
2381 2764 4.873827 ACGACTGCTTAACTAGAGAGAGAG 59.126 45.833 0.00 0.00 0.00 3.20
2382 2765 4.632251 CACGACTGCTTAACTAGAGAGAGA 59.368 45.833 0.00 0.00 0.00 3.10
2383 2766 4.729458 GCACGACTGCTTAACTAGAGAGAG 60.729 50.000 0.00 0.00 40.63 3.20
2442 2841 7.095910 TCTTCTTCTGCTCACAAGAGATTAAG 58.904 38.462 0.00 0.00 44.98 1.85
2445 2844 5.480642 TCTTCTTCTGCTCACAAGAGATT 57.519 39.130 0.00 0.00 44.98 2.40
2586 2985 3.076182 ACTCCCTGAAGTTCTCCTCTGTA 59.924 47.826 4.17 0.00 0.00 2.74
2684 3083 8.929260 TGGTGGTTATTAAGACGATCTCTATA 57.071 34.615 0.00 0.00 0.00 1.31
2685 3084 7.039644 CCTGGTGGTTATTAAGACGATCTCTAT 60.040 40.741 0.00 0.00 0.00 1.98
2687 3086 5.069251 CCTGGTGGTTATTAAGACGATCTCT 59.931 44.000 0.00 0.00 0.00 3.10
2688 3087 5.290386 CCTGGTGGTTATTAAGACGATCTC 58.710 45.833 0.00 0.00 0.00 2.75
2689 3088 4.101119 CCCTGGTGGTTATTAAGACGATCT 59.899 45.833 0.00 0.00 0.00 2.75
2716 3116 7.388500 TGAATCGCAAATGCTTATCAGATATGA 59.612 33.333 7.38 0.00 39.32 2.15
2737 3137 4.935808 ACGGAACACCTCTGTAAATGAATC 59.064 41.667 0.00 0.00 42.20 2.52
2820 3220 1.736032 CGGTGGGTTTCTCGTCATCTC 60.736 57.143 0.00 0.00 0.00 2.75
2822 3222 0.245539 TCGGTGGGTTTCTCGTCATC 59.754 55.000 0.00 0.00 0.00 2.92
2844 3244 0.745845 GGTCTCATCATGTTGCGCCT 60.746 55.000 4.18 0.00 0.00 5.52
2845 3245 1.718757 GGGTCTCATCATGTTGCGCC 61.719 60.000 4.18 0.00 0.00 6.53
2846 3246 0.745845 AGGGTCTCATCATGTTGCGC 60.746 55.000 0.00 0.00 0.00 6.09
3010 3419 0.755698 GGAGATCAGCCGGGTAGTCA 60.756 60.000 5.47 0.00 0.00 3.41
3085 3494 4.488136 ATGGGCAGCCGATTCGCA 62.488 61.111 5.00 0.00 0.00 5.10
3184 3593 2.768344 GGGCTTGGGATCGGGAGA 60.768 66.667 0.00 0.00 46.90 3.71
3196 3605 1.609783 CCTCCTGATTTCCGGGCTT 59.390 57.895 0.00 0.00 41.29 4.35
3366 3783 8.862325 ATTGTGAGTAGTATCTCTGATCTAGG 57.138 38.462 0.00 0.00 35.68 3.02
3372 3789 9.778741 AAACAAAATTGTGAGTAGTATCTCTGA 57.221 29.630 1.62 0.00 41.31 3.27
3380 3797 9.131791 ACCATAAGAAACAAAATTGTGAGTAGT 57.868 29.630 1.62 0.00 41.31 2.73
3381 3798 9.965824 AACCATAAGAAACAAAATTGTGAGTAG 57.034 29.630 1.62 0.00 41.31 2.57
3409 3826 3.278574 TGGTGACACAGAACCAAAGAAG 58.721 45.455 8.08 0.00 43.46 2.85
3443 3865 9.471702 AGGTCAAATAAGAAGATGAATGAACAT 57.528 29.630 0.00 0.00 0.00 2.71
3444 3866 8.733458 CAGGTCAAATAAGAAGATGAATGAACA 58.267 33.333 0.00 0.00 0.00 3.18
3445 3867 8.950210 TCAGGTCAAATAAGAAGATGAATGAAC 58.050 33.333 0.00 0.00 0.00 3.18
3446 3868 9.170734 CTCAGGTCAAATAAGAAGATGAATGAA 57.829 33.333 0.00 0.00 0.00 2.57
3447 3869 7.772292 CCTCAGGTCAAATAAGAAGATGAATGA 59.228 37.037 0.00 0.00 0.00 2.57
3448 3870 7.555554 ACCTCAGGTCAAATAAGAAGATGAATG 59.444 37.037 0.00 0.00 0.00 2.67
3449 3871 7.555554 CACCTCAGGTCAAATAAGAAGATGAAT 59.444 37.037 0.00 0.00 31.02 2.57
3569 4022 6.794158 GCAAATGCGTGCAATAAAAACAATAA 59.206 30.769 0.00 0.00 44.29 1.40
3570 4023 6.302615 GCAAATGCGTGCAATAAAAACAATA 58.697 32.000 0.00 0.00 44.29 1.90
3571 4024 5.145759 GCAAATGCGTGCAATAAAAACAAT 58.854 33.333 0.00 0.00 44.29 2.71
3572 4025 4.521943 GCAAATGCGTGCAATAAAAACAA 58.478 34.783 0.00 0.00 44.29 2.83
3586 4066 0.108992 ACATTCCTGCTGCAAATGCG 60.109 50.000 21.06 6.70 45.83 4.73
3620 4100 5.922546 TGTTGTTCTTCCAATCGAATAACG 58.077 37.500 0.00 0.00 41.31 3.18
3725 4206 5.060506 TCTCGCATTGGAAAAGAAAGTACA 58.939 37.500 0.00 0.00 0.00 2.90
3728 4209 5.010012 ACAATCTCGCATTGGAAAAGAAAGT 59.990 36.000 10.56 0.00 33.56 2.66
3738 4219 2.981805 CAACAACACAATCTCGCATTGG 59.018 45.455 10.56 3.98 33.56 3.16
3740 4221 3.988379 ACAACAACACAATCTCGCATT 57.012 38.095 0.00 0.00 0.00 3.56
3742 4223 3.773860 AAACAACAACACAATCTCGCA 57.226 38.095 0.00 0.00 0.00 5.10
3743 4224 4.778773 GCAAAAACAACAACACAATCTCGC 60.779 41.667 0.00 0.00 0.00 5.03
3744 4225 4.546081 CGCAAAAACAACAACACAATCTCG 60.546 41.667 0.00 0.00 0.00 4.04
3745 4226 4.778773 GCGCAAAAACAACAACACAATCTC 60.779 41.667 0.30 0.00 0.00 2.75
3746 4227 3.061965 GCGCAAAAACAACAACACAATCT 59.938 39.130 0.30 0.00 0.00 2.40
3747 4228 3.341410 GCGCAAAAACAACAACACAATC 58.659 40.909 0.30 0.00 0.00 2.67
3748 4229 2.222685 CGCGCAAAAACAACAACACAAT 60.223 40.909 8.75 0.00 0.00 2.71
3750 4231 0.710567 CGCGCAAAAACAACAACACA 59.289 45.000 8.75 0.00 0.00 3.72
3751 4232 0.024364 CCGCGCAAAAACAACAACAC 59.976 50.000 8.75 0.00 0.00 3.32
3752 4233 1.687494 GCCGCGCAAAAACAACAACA 61.687 50.000 8.75 0.00 0.00 3.33
3783 4264 2.299582 AGTATGCATTGCAGGCAACAAA 59.700 40.909 17.52 0.00 45.60 2.83
3820 4313 1.524355 CAGCTGCAGTCGTATACATGC 59.476 52.381 16.64 14.60 39.14 4.06
3822 4315 2.035193 CCTCAGCTGCAGTCGTATACAT 59.965 50.000 16.64 0.00 0.00 2.29
3823 4316 1.405463 CCTCAGCTGCAGTCGTATACA 59.595 52.381 16.64 0.00 0.00 2.29
3824 4317 1.866063 GCCTCAGCTGCAGTCGTATAC 60.866 57.143 16.64 0.00 35.50 1.47
3825 4318 0.385751 GCCTCAGCTGCAGTCGTATA 59.614 55.000 16.64 0.00 35.50 1.47
3826 4319 1.142748 GCCTCAGCTGCAGTCGTAT 59.857 57.895 16.64 0.00 35.50 3.06
3827 4320 2.573869 GCCTCAGCTGCAGTCGTA 59.426 61.111 16.64 0.00 35.50 3.43
3828 4321 4.731612 CGCCTCAGCTGCAGTCGT 62.732 66.667 16.64 0.00 36.60 4.34
3846 4339 3.119101 AGACACTTAACTAGCCGACATGG 60.119 47.826 0.00 0.00 42.50 3.66
3847 4340 3.859961 CAGACACTTAACTAGCCGACATG 59.140 47.826 0.00 0.00 0.00 3.21
3863 4356 1.597742 ACATGTCAAGTGGCAGACAC 58.402 50.000 9.86 0.00 46.38 3.67
3975 4469 2.819608 TCTCATTGGGCGGAAGAAAAAG 59.180 45.455 0.00 0.00 0.00 2.27
4025 4521 8.871686 AAAAGCAGAAAAACAACATTACCTAG 57.128 30.769 0.00 0.00 0.00 3.02
4062 4883 2.203153 GCAACTGGTCCGTGGTGT 60.203 61.111 2.33 0.00 0.00 4.16
4071 4892 0.390124 CAAGCCAACATGCAACTGGT 59.610 50.000 12.22 0.00 32.46 4.00
4148 4969 1.667756 CCTAGTTGCAGTTGCGTCGTA 60.668 52.381 0.00 0.00 45.83 3.43
4191 5012 2.621998 AGTTACATATCGGGTGTCGGAG 59.378 50.000 0.00 0.00 39.77 4.63
4195 5016 2.864343 GTGCAGTTACATATCGGGTGTC 59.136 50.000 0.00 0.00 0.00 3.67
4237 5058 1.310904 TCGTGTTTTACCCCTTGCAC 58.689 50.000 0.00 0.00 0.00 4.57
4257 5078 1.462731 GGCACCACCACTGATTGCAA 61.463 55.000 0.00 0.00 38.86 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.