Multiple sequence alignment - TraesCS3B01G238100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G238100 chr3B 100.000 2413 0 0 1 2413 373286634 373284222 0.000000e+00 4457.0
1 TraesCS3B01G238100 chr3B 94.505 273 9 2 223 495 325768202 325767936 1.330000e-112 416.0
2 TraesCS3B01G238100 chr3B 93.927 247 11 2 1884 2127 798008213 798008458 1.050000e-98 370.0
3 TraesCS3B01G238100 chr3B 92.432 185 14 0 1620 1804 373284803 373284619 5.120000e-67 265.0
4 TraesCS3B01G238100 chr3B 93.284 134 9 0 1672 1805 84292868 84293001 5.260000e-47 198.0
5 TraesCS3B01G238100 chr3B 93.893 131 8 0 1671 1801 279677115 279676985 5.260000e-47 198.0
6 TraesCS3B01G238100 chr3B 86.047 172 11 3 1674 1832 390804302 390804473 3.190000e-39 172.0
7 TraesCS3B01G238100 chr3B 89.922 129 10 3 1674 1801 745551594 745551468 1.920000e-36 163.0
8 TraesCS3B01G238100 chr3D 98.308 1123 17 2 555 1675 277066109 277067231 0.000000e+00 1967.0
9 TraesCS3B01G238100 chr3D 95.551 472 8 7 73 542 277065292 277065752 0.000000e+00 743.0
10 TraesCS3B01G238100 chr3D 92.188 256 17 3 2161 2413 476512449 476512704 2.280000e-95 359.0
11 TraesCS3B01G238100 chr3D 91.892 259 14 5 1886 2140 54718253 54717998 2.950000e-94 355.0
12 TraesCS3B01G238100 chr3D 90.909 264 22 2 2147 2408 577428755 577428492 1.060000e-93 353.0
13 TraesCS3B01G238100 chr3A 92.989 1355 55 12 299 1638 362592130 362590801 0.000000e+00 1940.0
14 TraesCS3B01G238100 chr3A 96.296 54 2 0 1633 1686 362590720 362590667 3.300000e-14 89.8
15 TraesCS3B01G238100 chr2A 94.030 268 15 1 2147 2413 762693039 762693306 2.890000e-109 405.0
16 TraesCS3B01G238100 chr2A 94.007 267 15 1 2148 2413 752330578 752330312 1.040000e-108 403.0
17 TraesCS3B01G238100 chr2A 89.189 296 31 1 1164 1458 489960494 489960199 3.790000e-98 368.0
18 TraesCS3B01G238100 chr2A 95.349 86 4 0 977 1062 489960715 489960630 1.160000e-28 137.0
19 TraesCS3B01G238100 chr6B 92.832 279 18 2 2137 2413 46436965 46437243 1.040000e-108 403.0
20 TraesCS3B01G238100 chr6B 93.902 246 10 3 1879 2121 206666630 206666873 1.360000e-97 366.0
21 TraesCS3B01G238100 chr6B 90.672 268 22 3 2147 2413 684426612 684426877 1.060000e-93 353.0
22 TraesCS3B01G238100 chr1B 93.411 258 17 0 2156 2413 82059528 82059271 1.350000e-102 383.0
23 TraesCS3B01G238100 chr1B 94.332 247 10 2 1884 2127 641330572 641330327 2.260000e-100 375.0
24 TraesCS3B01G238100 chr1B 94.979 239 9 1 1886 2121 229945880 229946118 2.930000e-99 372.0
25 TraesCS3B01G238100 chr1B 94.531 128 7 0 1674 1801 587517201 587517074 5.260000e-47 198.0
26 TraesCS3B01G238100 chr1B 94.531 128 7 0 1674 1801 639422350 639422477 5.260000e-47 198.0
27 TraesCS3B01G238100 chr1B 94.531 128 7 0 1674 1801 665381341 665381468 5.260000e-47 198.0
28 TraesCS3B01G238100 chr2D 87.613 331 36 4 1132 1458 363974703 363974374 1.750000e-101 379.0
29 TraesCS3B01G238100 chr2D 90.647 278 24 2 2137 2413 333506340 333506616 3.790000e-98 368.0
30 TraesCS3B01G238100 chr2D 96.512 86 3 0 977 1062 363974890 363974805 2.500000e-30 143.0
31 TraesCS3B01G238100 chr2B 89.865 296 29 1 1164 1458 432133596 432133301 1.750000e-101 379.0
32 TraesCS3B01G238100 chr2B 94.239 243 10 2 1882 2121 176251742 176251983 3.790000e-98 368.0
33 TraesCS3B01G238100 chr2B 89.024 164 13 2 1674 1832 656978173 656978336 5.260000e-47 198.0
34 TraesCS3B01G238100 chr2B 85.143 175 13 2 1671 1832 591236307 591236481 1.480000e-37 167.0
35 TraesCS3B01G238100 chr2B 89.844 128 13 0 1674 1801 429442342 429442469 5.340000e-37 165.0
36 TraesCS3B01G238100 chr2B 96.512 86 3 0 977 1062 432133817 432133732 2.500000e-30 143.0
37 TraesCS3B01G238100 chrUn 94.979 239 9 1 1886 2121 59805087 59805325 2.930000e-99 372.0
38 TraesCS3B01G238100 chr5B 94.239 243 10 2 1882 2121 393770043 393769802 3.790000e-98 368.0
39 TraesCS3B01G238100 chr5B 85.304 313 42 3 1158 1466 421668937 421669249 1.080000e-83 320.0
40 TraesCS3B01G238100 chr5B 92.908 141 8 2 1662 1801 397957701 397957840 1.130000e-48 204.0
41 TraesCS3B01G238100 chr5B 96.629 89 3 0 971 1059 421668705 421668793 5.370000e-32 148.0
42 TraesCS3B01G238100 chr7D 92.045 264 15 2 2156 2413 169481228 169481491 1.360000e-97 366.0
43 TraesCS3B01G238100 chr4B 93.522 247 11 3 1878 2121 359759478 359759722 1.760000e-96 363.0
44 TraesCS3B01G238100 chr4B 87.879 165 13 4 1674 1832 235083946 235083783 1.140000e-43 187.0
45 TraesCS3B01G238100 chr4B 90.909 132 10 2 1671 1801 139540998 139541128 2.470000e-40 176.0
46 TraesCS3B01G238100 chr4B 85.465 172 12 4 1674 1832 256606388 256606217 1.480000e-37 167.0
47 TraesCS3B01G238100 chr5D 86.928 306 34 5 1158 1458 356901531 356901835 2.970000e-89 339.0
48 TraesCS3B01G238100 chr5D 96.629 89 3 0 971 1059 356901298 356901386 5.370000e-32 148.0
49 TraesCS3B01G238100 chr5A 86.275 306 36 5 1158 1458 458214121 458214425 6.430000e-86 327.0
50 TraesCS3B01G238100 chr5A 97.590 83 2 0 977 1059 458213895 458213977 2.500000e-30 143.0
51 TraesCS3B01G238100 chr4A 89.844 128 13 0 1674 1801 3373242 3373115 5.340000e-37 165.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G238100 chr3B 373284222 373286634 2412 True 2361.0 4457 96.2160 1 2413 2 chr3B.!!$R4 2412
1 TraesCS3B01G238100 chr3D 277065292 277067231 1939 False 1355.0 1967 96.9295 73 1675 2 chr3D.!!$F2 1602
2 TraesCS3B01G238100 chr3A 362590667 362592130 1463 True 1014.9 1940 94.6425 299 1686 2 chr3A.!!$R1 1387
3 TraesCS3B01G238100 chr2A 489960199 489960715 516 True 252.5 368 92.2690 977 1458 2 chr2A.!!$R2 481
4 TraesCS3B01G238100 chr2D 363974374 363974890 516 True 261.0 379 92.0625 977 1458 2 chr2D.!!$R1 481
5 TraesCS3B01G238100 chr2B 432133301 432133817 516 True 261.0 379 93.1885 977 1458 2 chr2B.!!$R1 481
6 TraesCS3B01G238100 chr5B 421668705 421669249 544 False 234.0 320 90.9665 971 1466 2 chr5B.!!$F2 495
7 TraesCS3B01G238100 chr5D 356901298 356901835 537 False 243.5 339 91.7785 971 1458 2 chr5D.!!$F1 487
8 TraesCS3B01G238100 chr5A 458213895 458214425 530 False 235.0 327 91.9325 977 1458 2 chr5A.!!$F1 481

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
545 547 0.185901 AGACAGCAAGCCTTTCCCAA 59.814 50.0 0.0 0.0 0.0 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2303 2822 0.032678 CCCAACCAGATCGAGATCCG 59.967 60.0 9.27 0.0 38.58 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.374042 TTTATGAAATTCAGGCGGGGA 57.626 42.857 1.10 0.00 0.00 4.81
21 22 3.374042 TTATGAAATTCAGGCGGGGAA 57.626 42.857 1.10 0.00 0.00 3.97
22 23 1.474330 ATGAAATTCAGGCGGGGAAC 58.526 50.000 1.10 0.00 0.00 3.62
37 38 2.971901 GGAACCTCTCCCCTTTGAAA 57.028 50.000 0.00 0.00 38.44 2.69
38 39 3.238788 GGAACCTCTCCCCTTTGAAAA 57.761 47.619 0.00 0.00 38.44 2.29
39 40 3.779444 GGAACCTCTCCCCTTTGAAAAT 58.221 45.455 0.00 0.00 38.44 1.82
40 41 4.160329 GGAACCTCTCCCCTTTGAAAATT 58.840 43.478 0.00 0.00 38.44 1.82
41 42 4.220821 GGAACCTCTCCCCTTTGAAAATTC 59.779 45.833 0.00 0.00 38.44 2.17
42 43 4.469469 ACCTCTCCCCTTTGAAAATTCA 57.531 40.909 0.00 0.00 34.92 2.57
43 44 4.814967 ACCTCTCCCCTTTGAAAATTCAA 58.185 39.130 4.52 4.52 44.78 2.69
44 45 9.048839 GGAACCTCTCCCCTTTGAAAATTCAAA 62.049 40.741 17.62 17.62 44.57 2.69
130 131 1.069636 GTTTTCAGACTTGAGCGGCAG 60.070 52.381 1.45 0.00 34.15 4.85
258 259 5.166398 CCGTGAACCGAAAAGACTACTAAT 58.834 41.667 0.00 0.00 39.56 1.73
260 261 6.808212 CCGTGAACCGAAAAGACTACTAATAA 59.192 38.462 0.00 0.00 39.56 1.40
357 358 0.893727 ACCGACCAGCCCATGAAAAC 60.894 55.000 0.00 0.00 0.00 2.43
542 544 4.013050 AGAATTAGACAGCAAGCCTTTCC 58.987 43.478 0.00 0.00 0.00 3.13
543 545 2.200373 TTAGACAGCAAGCCTTTCCC 57.800 50.000 0.00 0.00 0.00 3.97
544 546 1.064003 TAGACAGCAAGCCTTTCCCA 58.936 50.000 0.00 0.00 0.00 4.37
545 547 0.185901 AGACAGCAAGCCTTTCCCAA 59.814 50.000 0.00 0.00 0.00 4.12
546 548 1.039856 GACAGCAAGCCTTTCCCAAA 58.960 50.000 0.00 0.00 0.00 3.28
547 549 1.412343 GACAGCAAGCCTTTCCCAAAA 59.588 47.619 0.00 0.00 0.00 2.44
548 550 1.836802 ACAGCAAGCCTTTCCCAAAAA 59.163 42.857 0.00 0.00 0.00 1.94
841 1195 2.421424 GTGGAATTCAGAGACATGTGCC 59.579 50.000 1.15 0.00 0.00 5.01
1154 1580 2.028130 ACGATCTCATCTCTGTGGGTC 58.972 52.381 0.00 0.00 0.00 4.46
1184 1610 2.356553 GTGACAAGCGTGGCCGTA 60.357 61.111 2.05 0.00 36.15 4.02
1214 1640 1.069090 GAGCAAGGTGACGGTGACA 59.931 57.895 0.00 0.00 0.00 3.58
1507 1937 2.046988 TAGCCGACGACCAGACGA 60.047 61.111 0.00 0.00 40.26 4.20
1547 1977 5.562307 GCTTGATATGTCTTCATGCATCACC 60.562 44.000 0.00 0.00 41.43 4.02
1686 2205 5.742446 CGTACATAACTACTACCTCCGTTC 58.258 45.833 0.00 0.00 0.00 3.95
1687 2206 4.889832 ACATAACTACTACCTCCGTTCG 57.110 45.455 0.00 0.00 0.00 3.95
1688 2207 3.629398 ACATAACTACTACCTCCGTTCGG 59.371 47.826 4.74 4.74 0.00 4.30
1689 2208 2.496899 AACTACTACCTCCGTTCGGA 57.503 50.000 13.34 13.34 0.00 4.55
1690 2209 2.725221 ACTACTACCTCCGTTCGGAT 57.275 50.000 14.34 3.64 33.34 4.18
1691 2210 3.010200 ACTACTACCTCCGTTCGGATT 57.990 47.619 14.34 7.45 33.34 3.01
1692 2211 3.359950 ACTACTACCTCCGTTCGGATTT 58.640 45.455 14.34 7.11 33.34 2.17
1693 2212 4.526970 ACTACTACCTCCGTTCGGATTTA 58.473 43.478 14.34 7.83 33.34 1.40
1694 2213 5.136105 ACTACTACCTCCGTTCGGATTTAT 58.864 41.667 14.34 3.69 33.34 1.40
1695 2214 5.595952 ACTACTACCTCCGTTCGGATTTATT 59.404 40.000 14.34 6.03 33.34 1.40
1696 2215 4.690122 ACTACCTCCGTTCGGATTTATTG 58.310 43.478 14.34 2.06 33.34 1.90
1697 2216 2.914059 ACCTCCGTTCGGATTTATTGG 58.086 47.619 14.34 12.73 33.34 3.16
1698 2217 2.237893 ACCTCCGTTCGGATTTATTGGT 59.762 45.455 14.34 13.33 33.34 3.67
1699 2218 2.870411 CCTCCGTTCGGATTTATTGGTC 59.130 50.000 14.34 0.00 33.34 4.02
1700 2219 2.870411 CTCCGTTCGGATTTATTGGTCC 59.130 50.000 14.34 0.00 33.34 4.46
1701 2220 1.944709 CCGTTCGGATTTATTGGTCCC 59.055 52.381 5.19 0.00 0.00 4.46
1702 2221 1.944709 CGTTCGGATTTATTGGTCCCC 59.055 52.381 0.00 0.00 0.00 4.81
1703 2222 2.681390 CGTTCGGATTTATTGGTCCCCA 60.681 50.000 0.00 0.00 0.00 4.96
1704 2223 3.562182 GTTCGGATTTATTGGTCCCCAT 58.438 45.455 0.00 0.00 31.53 4.00
1705 2224 3.958147 GTTCGGATTTATTGGTCCCCATT 59.042 43.478 0.00 0.00 31.53 3.16
1706 2225 3.561143 TCGGATTTATTGGTCCCCATTG 58.439 45.455 0.00 0.00 31.53 2.82
1707 2226 3.053245 TCGGATTTATTGGTCCCCATTGT 60.053 43.478 0.00 0.00 31.53 2.71
1708 2227 4.166337 TCGGATTTATTGGTCCCCATTGTA 59.834 41.667 0.00 0.00 31.53 2.41
1709 2228 5.076873 CGGATTTATTGGTCCCCATTGTAT 58.923 41.667 0.00 0.00 31.53 2.29
1710 2229 5.538433 CGGATTTATTGGTCCCCATTGTATT 59.462 40.000 0.00 0.00 31.53 1.89
1711 2230 6.041523 CGGATTTATTGGTCCCCATTGTATTT 59.958 38.462 0.00 0.00 31.53 1.40
1712 2231 7.441836 GGATTTATTGGTCCCCATTGTATTTC 58.558 38.462 0.00 0.00 31.53 2.17
1713 2232 7.290014 GGATTTATTGGTCCCCATTGTATTTCT 59.710 37.037 0.00 0.00 31.53 2.52
1714 2233 8.622572 ATTTATTGGTCCCCATTGTATTTCTT 57.377 30.769 0.00 0.00 31.53 2.52
1715 2234 9.722317 ATTTATTGGTCCCCATTGTATTTCTTA 57.278 29.630 0.00 0.00 31.53 2.10
1716 2235 9.722317 TTTATTGGTCCCCATTGTATTTCTTAT 57.278 29.630 0.00 0.00 31.53 1.73
1717 2236 7.839680 ATTGGTCCCCATTGTATTTCTTATC 57.160 36.000 0.00 0.00 31.53 1.75
1718 2237 6.334378 TGGTCCCCATTGTATTTCTTATCA 57.666 37.500 0.00 0.00 0.00 2.15
1719 2238 6.736581 TGGTCCCCATTGTATTTCTTATCAA 58.263 36.000 0.00 0.00 0.00 2.57
1720 2239 7.185565 TGGTCCCCATTGTATTTCTTATCAAA 58.814 34.615 0.00 0.00 0.00 2.69
1721 2240 7.843760 TGGTCCCCATTGTATTTCTTATCAAAT 59.156 33.333 0.00 0.00 0.00 2.32
1722 2241 8.704668 GGTCCCCATTGTATTTCTTATCAAATT 58.295 33.333 0.00 0.00 0.00 1.82
1757 2276 8.635877 AATTAAACTAACAAAATGTTCACGCA 57.364 26.923 0.00 0.00 40.22 5.24
1758 2277 8.810652 ATTAAACTAACAAAATGTTCACGCAT 57.189 26.923 0.00 0.00 40.22 4.73
1759 2278 6.509317 AAACTAACAAAATGTTCACGCATG 57.491 33.333 0.00 0.00 40.22 4.06
1760 2279 5.181690 ACTAACAAAATGTTCACGCATGT 57.818 34.783 0.00 0.00 40.22 3.21
1761 2280 5.212194 ACTAACAAAATGTTCACGCATGTC 58.788 37.500 0.00 0.00 40.22 3.06
1762 2281 3.706802 ACAAAATGTTCACGCATGTCA 57.293 38.095 0.00 0.00 0.00 3.58
1763 2282 3.371168 ACAAAATGTTCACGCATGTCAC 58.629 40.909 0.00 0.00 0.00 3.67
1764 2283 2.704725 AAATGTTCACGCATGTCACC 57.295 45.000 0.00 0.00 0.00 4.02
1765 2284 1.603456 AATGTTCACGCATGTCACCA 58.397 45.000 0.00 0.00 0.00 4.17
1766 2285 1.603456 ATGTTCACGCATGTCACCAA 58.397 45.000 0.00 0.00 0.00 3.67
1767 2286 1.383523 TGTTCACGCATGTCACCAAA 58.616 45.000 0.00 0.00 0.00 3.28
1768 2287 1.064803 TGTTCACGCATGTCACCAAAC 59.935 47.619 0.00 0.00 0.00 2.93
1769 2288 1.064803 GTTCACGCATGTCACCAAACA 59.935 47.619 0.00 0.00 0.00 2.83
1770 2289 1.603456 TCACGCATGTCACCAAACAT 58.397 45.000 0.00 0.00 40.49 2.71
1771 2290 1.952990 TCACGCATGTCACCAAACATT 59.047 42.857 0.00 0.00 37.78 2.71
1772 2291 3.142174 TCACGCATGTCACCAAACATTA 58.858 40.909 0.00 0.00 37.78 1.90
1773 2292 3.755905 TCACGCATGTCACCAAACATTAT 59.244 39.130 0.00 0.00 37.78 1.28
1774 2293 4.938226 TCACGCATGTCACCAAACATTATA 59.062 37.500 0.00 0.00 37.78 0.98
1775 2294 5.588246 TCACGCATGTCACCAAACATTATAT 59.412 36.000 0.00 0.00 37.78 0.86
1776 2295 6.094742 TCACGCATGTCACCAAACATTATATT 59.905 34.615 0.00 0.00 37.78 1.28
1777 2296 6.751425 CACGCATGTCACCAAACATTATATTT 59.249 34.615 0.00 0.00 37.78 1.40
1778 2297 7.275341 CACGCATGTCACCAAACATTATATTTT 59.725 33.333 0.00 0.00 37.78 1.82
1779 2298 7.816995 ACGCATGTCACCAAACATTATATTTTT 59.183 29.630 0.00 0.00 37.78 1.94
1780 2299 9.295214 CGCATGTCACCAAACATTATATTTTTA 57.705 29.630 0.00 0.00 37.78 1.52
1828 2347 9.932699 TTTTTCTTGACATGCATTAACATTTTG 57.067 25.926 0.00 0.00 0.00 2.44
1829 2348 8.659925 TTTCTTGACATGCATTAACATTTTGT 57.340 26.923 0.00 0.00 0.00 2.83
1830 2349 8.659925 TTCTTGACATGCATTAACATTTTGTT 57.340 26.923 0.00 0.00 43.88 2.83
1831 2350 9.755804 TTCTTGACATGCATTAACATTTTGTTA 57.244 25.926 0.00 0.00 41.45 2.41
1894 2413 8.718158 AATAAGGGTACATAACTACTACCTCC 57.282 38.462 0.00 0.00 32.00 4.30
1895 2414 5.072129 AGGGTACATAACTACTACCTCCC 57.928 47.826 0.00 0.00 32.00 4.30
1896 2415 4.736055 AGGGTACATAACTACTACCTCCCT 59.264 45.833 0.00 0.00 36.97 4.20
1897 2416 5.076182 GGGTACATAACTACTACCTCCCTC 58.924 50.000 0.00 0.00 32.00 4.30
1898 2417 5.076182 GGTACATAACTACTACCTCCCTCC 58.924 50.000 0.00 0.00 0.00 4.30
1899 2418 3.830121 ACATAACTACTACCTCCCTCCG 58.170 50.000 0.00 0.00 0.00 4.63
1900 2419 3.155501 CATAACTACTACCTCCCTCCGG 58.844 54.545 0.00 0.00 0.00 5.14
1901 2420 0.261109 AACTACTACCTCCCTCCGGG 59.739 60.000 0.00 0.00 46.11 5.73
1902 2421 0.923233 ACTACTACCTCCCTCCGGGT 60.923 60.000 0.00 0.00 44.74 5.28
1903 2422 0.261109 CTACTACCTCCCTCCGGGTT 59.739 60.000 0.00 0.00 44.74 4.11
1904 2423 0.712380 TACTACCTCCCTCCGGGTTT 59.288 55.000 0.00 0.00 44.74 3.27
1905 2424 0.712380 ACTACCTCCCTCCGGGTTTA 59.288 55.000 0.00 0.00 44.74 2.01
1906 2425 1.293153 ACTACCTCCCTCCGGGTTTAT 59.707 52.381 0.00 0.00 44.74 1.40
1907 2426 2.293385 ACTACCTCCCTCCGGGTTTATT 60.293 50.000 0.00 0.00 44.74 1.40
1908 2427 0.916809 ACCTCCCTCCGGGTTTATTG 59.083 55.000 0.00 0.00 44.74 1.90
1909 2428 0.182775 CCTCCCTCCGGGTTTATTGG 59.817 60.000 0.00 0.00 44.74 3.16
1910 2429 0.916809 CTCCCTCCGGGTTTATTGGT 59.083 55.000 0.00 0.00 44.74 3.67
1911 2430 0.913924 TCCCTCCGGGTTTATTGGTC 59.086 55.000 0.00 0.00 44.74 4.02
1912 2431 0.106868 CCCTCCGGGTTTATTGGTCC 60.107 60.000 0.00 0.00 38.25 4.46
1913 2432 0.106868 CCTCCGGGTTTATTGGTCCC 60.107 60.000 0.00 0.00 37.98 4.46
1914 2433 0.106868 CTCCGGGTTTATTGGTCCCC 60.107 60.000 0.00 0.00 38.09 4.81
1915 2434 0.845543 TCCGGGTTTATTGGTCCCCA 60.846 55.000 0.00 0.00 38.09 4.96
1916 2435 0.260523 CCGGGTTTATTGGTCCCCAT 59.739 55.000 0.00 0.00 38.09 4.00
1917 2436 1.342574 CCGGGTTTATTGGTCCCCATT 60.343 52.381 0.00 0.00 38.09 3.16
1918 2437 1.754226 CGGGTTTATTGGTCCCCATTG 59.246 52.381 0.00 0.00 38.09 2.82
1919 2438 2.827755 GGGTTTATTGGTCCCCATTGT 58.172 47.619 0.00 0.00 37.09 2.71
1920 2439 3.625211 CGGGTTTATTGGTCCCCATTGTA 60.625 47.826 0.00 0.00 38.09 2.41
1921 2440 4.552674 GGGTTTATTGGTCCCCATTGTAT 58.447 43.478 0.00 0.00 37.09 2.29
1922 2441 4.966168 GGGTTTATTGGTCCCCATTGTATT 59.034 41.667 0.00 0.00 37.09 1.89
1923 2442 5.427157 GGGTTTATTGGTCCCCATTGTATTT 59.573 40.000 0.00 0.00 37.09 1.40
1924 2443 6.407639 GGGTTTATTGGTCCCCATTGTATTTC 60.408 42.308 0.00 0.00 37.09 2.17
1925 2444 6.407639 GGTTTATTGGTCCCCATTGTATTTCC 60.408 42.308 0.00 0.00 31.53 3.13
1926 2445 4.625225 ATTGGTCCCCATTGTATTTCCT 57.375 40.909 0.00 0.00 31.53 3.36
1927 2446 3.380471 TGGTCCCCATTGTATTTCCTG 57.620 47.619 0.00 0.00 0.00 3.86
1928 2447 2.652348 TGGTCCCCATTGTATTTCCTGT 59.348 45.455 0.00 0.00 0.00 4.00
1929 2448 3.288092 GGTCCCCATTGTATTTCCTGTC 58.712 50.000 0.00 0.00 0.00 3.51
1930 2449 3.308832 GGTCCCCATTGTATTTCCTGTCA 60.309 47.826 0.00 0.00 0.00 3.58
1931 2450 4.340617 GTCCCCATTGTATTTCCTGTCAA 58.659 43.478 0.00 0.00 0.00 3.18
1932 2451 4.770010 GTCCCCATTGTATTTCCTGTCAAA 59.230 41.667 0.00 0.00 0.00 2.69
1933 2452 5.422012 GTCCCCATTGTATTTCCTGTCAAAT 59.578 40.000 0.00 0.00 0.00 2.32
1934 2453 6.022315 TCCCCATTGTATTTCCTGTCAAATT 58.978 36.000 0.00 0.00 0.00 1.82
1935 2454 6.500049 TCCCCATTGTATTTCCTGTCAAATTT 59.500 34.615 0.00 0.00 0.00 1.82
1936 2455 7.017056 TCCCCATTGTATTTCCTGTCAAATTTT 59.983 33.333 0.00 0.00 0.00 1.82
1937 2456 8.317679 CCCCATTGTATTTCCTGTCAAATTTTA 58.682 33.333 0.00 0.00 0.00 1.52
1938 2457 9.717942 CCCATTGTATTTCCTGTCAAATTTTAA 57.282 29.630 0.00 0.00 0.00 1.52
1972 2491 9.900710 TTAAACTAACAAAATATTCACGCATGT 57.099 25.926 0.00 0.00 0.00 3.21
1973 2492 8.447787 AAACTAACAAAATATTCACGCATGTC 57.552 30.769 0.00 0.00 0.00 3.06
1974 2493 7.139896 ACTAACAAAATATTCACGCATGTCA 57.860 32.000 0.00 0.00 0.00 3.58
1975 2494 7.021196 ACTAACAAAATATTCACGCATGTCAC 58.979 34.615 0.00 0.00 0.00 3.67
1976 2495 4.732784 ACAAAATATTCACGCATGTCACC 58.267 39.130 0.00 0.00 0.00 4.02
1977 2496 4.217334 ACAAAATATTCACGCATGTCACCA 59.783 37.500 0.00 0.00 0.00 4.17
1978 2497 5.159925 CAAAATATTCACGCATGTCACCAA 58.840 37.500 0.00 0.00 0.00 3.67
1979 2498 5.384063 AAATATTCACGCATGTCACCAAA 57.616 34.783 0.00 0.00 0.00 3.28
1980 2499 2.704725 ATTCACGCATGTCACCAAAC 57.295 45.000 0.00 0.00 0.00 2.93
1981 2500 1.383523 TTCACGCATGTCACCAAACA 58.616 45.000 0.00 0.00 0.00 2.83
1982 2501 1.603456 TCACGCATGTCACCAAACAT 58.397 45.000 0.00 0.00 40.49 2.71
1983 2502 1.952990 TCACGCATGTCACCAAACATT 59.047 42.857 0.00 0.00 37.78 2.71
1984 2503 3.142174 TCACGCATGTCACCAAACATTA 58.858 40.909 0.00 0.00 37.78 1.90
1985 2504 3.755905 TCACGCATGTCACCAAACATTAT 59.244 39.130 0.00 0.00 37.78 1.28
1986 2505 4.938226 TCACGCATGTCACCAAACATTATA 59.062 37.500 0.00 0.00 37.78 0.98
1987 2506 5.588246 TCACGCATGTCACCAAACATTATAT 59.412 36.000 0.00 0.00 37.78 0.86
1988 2507 6.094742 TCACGCATGTCACCAAACATTATATT 59.905 34.615 0.00 0.00 37.78 1.28
1989 2508 6.751425 CACGCATGTCACCAAACATTATATTT 59.249 34.615 0.00 0.00 37.78 1.40
1990 2509 7.275341 CACGCATGTCACCAAACATTATATTTT 59.725 33.333 0.00 0.00 37.78 1.82
1991 2510 7.816995 ACGCATGTCACCAAACATTATATTTTT 59.183 29.630 0.00 0.00 37.78 1.94
1992 2511 8.109391 CGCATGTCACCAAACATTATATTTTTG 58.891 33.333 0.00 0.00 37.78 2.44
1993 2512 9.149225 GCATGTCACCAAACATTATATTTTTGA 57.851 29.630 0.00 0.00 37.78 2.69
2041 2560 9.577110 TCAATGAGATAATTTTTCTTGACATGC 57.423 29.630 0.00 0.00 0.00 4.06
2042 2561 9.361315 CAATGAGATAATTTTTCTTGACATGCA 57.639 29.630 0.00 0.00 0.00 3.96
2053 2572 9.932699 TTTTTCTTGACATGCATTAACATTTTG 57.067 25.926 0.00 0.00 0.00 2.44
2054 2573 8.659925 TTTCTTGACATGCATTAACATTTTGT 57.340 26.923 0.00 0.00 0.00 2.83
2055 2574 8.659925 TTCTTGACATGCATTAACATTTTGTT 57.340 26.923 0.00 0.00 43.88 2.83
2056 2575 9.755804 TTCTTGACATGCATTAACATTTTGTTA 57.244 25.926 0.00 0.00 41.45 2.41
2057 2576 9.409312 TCTTGACATGCATTAACATTTTGTTAG 57.591 29.630 0.00 0.00 42.93 2.34
2058 2577 9.195411 CTTGACATGCATTAACATTTTGTTAGT 57.805 29.630 0.00 0.00 42.93 2.24
2059 2578 9.539825 TTGACATGCATTAACATTTTGTTAGTT 57.460 25.926 0.00 0.00 42.93 2.24
2092 2611 9.796120 TTAGTCAAAATTCACAAACTACAAAGG 57.204 29.630 0.00 0.00 0.00 3.11
2093 2612 7.264947 AGTCAAAATTCACAAACTACAAAGGG 58.735 34.615 0.00 0.00 0.00 3.95
2094 2613 6.478673 GTCAAAATTCACAAACTACAAAGGGG 59.521 38.462 0.00 0.00 0.00 4.79
2095 2614 6.381420 TCAAAATTCACAAACTACAAAGGGGA 59.619 34.615 0.00 0.00 0.00 4.81
2096 2615 6.994421 AAATTCACAAACTACAAAGGGGAT 57.006 33.333 0.00 0.00 0.00 3.85
2097 2616 6.590234 AATTCACAAACTACAAAGGGGATC 57.410 37.500 0.00 0.00 0.00 3.36
2098 2617 4.993705 TCACAAACTACAAAGGGGATCT 57.006 40.909 0.00 0.00 0.00 2.75
2099 2618 6.442541 TTCACAAACTACAAAGGGGATCTA 57.557 37.500 0.00 0.00 0.00 1.98
2100 2619 6.636454 TCACAAACTACAAAGGGGATCTAT 57.364 37.500 0.00 0.00 0.00 1.98
2101 2620 7.743116 TCACAAACTACAAAGGGGATCTATA 57.257 36.000 0.00 0.00 0.00 1.31
2102 2621 8.153221 TCACAAACTACAAAGGGGATCTATAA 57.847 34.615 0.00 0.00 0.00 0.98
2103 2622 8.607713 TCACAAACTACAAAGGGGATCTATAAA 58.392 33.333 0.00 0.00 0.00 1.40
2104 2623 8.674607 CACAAACTACAAAGGGGATCTATAAAC 58.325 37.037 0.00 0.00 0.00 2.01
2105 2624 7.832685 ACAAACTACAAAGGGGATCTATAAACC 59.167 37.037 0.00 0.00 0.00 3.27
2106 2625 7.519347 AACTACAAAGGGGATCTATAAACCA 57.481 36.000 0.00 0.00 0.00 3.67
2107 2626 7.138054 ACTACAAAGGGGATCTATAAACCAG 57.862 40.000 0.00 0.00 0.00 4.00
2108 2627 5.388599 ACAAAGGGGATCTATAAACCAGG 57.611 43.478 0.00 0.00 0.00 4.45
2109 2628 5.043762 ACAAAGGGGATCTATAAACCAGGA 58.956 41.667 0.00 0.00 0.00 3.86
2110 2629 5.104067 ACAAAGGGGATCTATAAACCAGGAC 60.104 44.000 0.00 0.00 0.00 3.85
2111 2630 3.240302 AGGGGATCTATAAACCAGGACG 58.760 50.000 0.00 0.00 0.00 4.79
2112 2631 3.116862 AGGGGATCTATAAACCAGGACGA 60.117 47.826 0.00 0.00 0.00 4.20
2113 2632 3.644738 GGGGATCTATAAACCAGGACGAA 59.355 47.826 0.00 0.00 0.00 3.85
2114 2633 4.262506 GGGGATCTATAAACCAGGACGAAG 60.263 50.000 0.00 0.00 0.00 3.79
2115 2634 4.262506 GGGATCTATAAACCAGGACGAAGG 60.263 50.000 0.00 0.00 0.00 3.46
2116 2635 4.344390 GGATCTATAAACCAGGACGAAGGT 59.656 45.833 0.00 0.00 40.61 3.50
2117 2636 5.537674 GGATCTATAAACCAGGACGAAGGTA 59.462 44.000 0.00 0.00 37.07 3.08
2118 2637 6.294620 GGATCTATAAACCAGGACGAAGGTAG 60.295 46.154 0.00 0.00 37.07 3.18
2119 2638 5.513233 TCTATAAACCAGGACGAAGGTAGT 58.487 41.667 0.00 0.00 37.07 2.73
2120 2639 6.662755 TCTATAAACCAGGACGAAGGTAGTA 58.337 40.000 0.00 0.00 37.07 1.82
2121 2640 7.118723 TCTATAAACCAGGACGAAGGTAGTAA 58.881 38.462 0.00 0.00 37.07 2.24
2122 2641 4.532314 AAACCAGGACGAAGGTAGTAAG 57.468 45.455 0.00 0.00 37.07 2.34
2123 2642 3.166560 ACCAGGACGAAGGTAGTAAGT 57.833 47.619 0.00 0.00 36.07 2.24
2124 2643 2.824341 ACCAGGACGAAGGTAGTAAGTG 59.176 50.000 0.00 0.00 36.07 3.16
2125 2644 2.824341 CCAGGACGAAGGTAGTAAGTGT 59.176 50.000 0.00 0.00 0.00 3.55
2126 2645 3.367087 CCAGGACGAAGGTAGTAAGTGTG 60.367 52.174 0.00 0.00 0.00 3.82
2127 2646 3.504906 CAGGACGAAGGTAGTAAGTGTGA 59.495 47.826 0.00 0.00 0.00 3.58
2128 2647 4.022589 CAGGACGAAGGTAGTAAGTGTGAA 60.023 45.833 0.00 0.00 0.00 3.18
2129 2648 4.217983 AGGACGAAGGTAGTAAGTGTGAAG 59.782 45.833 0.00 0.00 0.00 3.02
2130 2649 3.910648 ACGAAGGTAGTAAGTGTGAAGC 58.089 45.455 0.00 0.00 0.00 3.86
2131 2650 3.319972 ACGAAGGTAGTAAGTGTGAAGCA 59.680 43.478 0.00 0.00 0.00 3.91
2132 2651 3.921021 CGAAGGTAGTAAGTGTGAAGCAG 59.079 47.826 0.00 0.00 0.00 4.24
2133 2652 4.558898 CGAAGGTAGTAAGTGTGAAGCAGT 60.559 45.833 0.00 0.00 0.00 4.40
2134 2653 4.258702 AGGTAGTAAGTGTGAAGCAGTG 57.741 45.455 0.00 0.00 0.00 3.66
2135 2654 3.895656 AGGTAGTAAGTGTGAAGCAGTGA 59.104 43.478 0.00 0.00 0.00 3.41
2136 2655 3.988517 GGTAGTAAGTGTGAAGCAGTGAC 59.011 47.826 0.00 0.00 32.96 3.67
2137 2656 4.262079 GGTAGTAAGTGTGAAGCAGTGACT 60.262 45.833 0.00 0.00 43.16 3.41
2138 2657 3.983741 AGTAAGTGTGAAGCAGTGACTC 58.016 45.455 0.00 0.00 37.63 3.36
2139 2658 2.246719 AAGTGTGAAGCAGTGACTCC 57.753 50.000 0.00 0.00 0.00 3.85
2140 2659 0.394565 AGTGTGAAGCAGTGACTCCC 59.605 55.000 0.00 0.00 0.00 4.30
2141 2660 0.394565 GTGTGAAGCAGTGACTCCCT 59.605 55.000 0.00 0.00 0.00 4.20
2142 2661 0.681733 TGTGAAGCAGTGACTCCCTC 59.318 55.000 0.00 0.00 0.00 4.30
2143 2662 0.036858 GTGAAGCAGTGACTCCCTCC 60.037 60.000 0.00 0.00 0.00 4.30
2144 2663 0.178921 TGAAGCAGTGACTCCCTCCT 60.179 55.000 0.00 0.00 0.00 3.69
2145 2664 0.248843 GAAGCAGTGACTCCCTCCTG 59.751 60.000 0.00 0.00 0.00 3.86
2146 2665 0.472734 AAGCAGTGACTCCCTCCTGT 60.473 55.000 0.00 0.00 0.00 4.00
2147 2666 0.902516 AGCAGTGACTCCCTCCTGTC 60.903 60.000 0.00 0.00 0.00 3.51
2148 2667 1.893919 GCAGTGACTCCCTCCTGTCC 61.894 65.000 0.00 0.00 32.67 4.02
2149 2668 0.252012 CAGTGACTCCCTCCTGTCCT 60.252 60.000 0.00 0.00 32.67 3.85
2150 2669 0.040499 AGTGACTCCCTCCTGTCCTC 59.960 60.000 0.00 0.00 32.67 3.71
2151 2670 0.973496 GTGACTCCCTCCTGTCCTCC 60.973 65.000 0.00 0.00 32.67 4.30
2152 2671 1.382009 GACTCCCTCCTGTCCTCCC 60.382 68.421 0.00 0.00 0.00 4.30
2153 2672 1.864559 ACTCCCTCCTGTCCTCCCT 60.865 63.158 0.00 0.00 0.00 4.20
2154 2673 0.555369 ACTCCCTCCTGTCCTCCCTA 60.555 60.000 0.00 0.00 0.00 3.53
2155 2674 0.105913 CTCCCTCCTGTCCTCCCTAC 60.106 65.000 0.00 0.00 0.00 3.18
2156 2675 1.075151 CCCTCCTGTCCTCCCTACC 60.075 68.421 0.00 0.00 0.00 3.18
2157 2676 1.595058 CCCTCCTGTCCTCCCTACCT 61.595 65.000 0.00 0.00 0.00 3.08
2158 2677 0.105913 CCTCCTGTCCTCCCTACCTC 60.106 65.000 0.00 0.00 0.00 3.85
2159 2678 0.105913 CTCCTGTCCTCCCTACCTCC 60.106 65.000 0.00 0.00 0.00 4.30
2160 2679 1.075151 CCTGTCCTCCCTACCTCCC 60.075 68.421 0.00 0.00 0.00 4.30
2161 2680 1.075151 CTGTCCTCCCTACCTCCCC 60.075 68.421 0.00 0.00 0.00 4.81
2162 2681 2.286213 GTCCTCCCTACCTCCCCC 59.714 72.222 0.00 0.00 0.00 5.40
2163 2682 3.436028 TCCTCCCTACCTCCCCCG 61.436 72.222 0.00 0.00 0.00 5.73
2164 2683 3.763757 CCTCCCTACCTCCCCCGT 61.764 72.222 0.00 0.00 0.00 5.28
2165 2684 2.444140 CTCCCTACCTCCCCCGTG 60.444 72.222 0.00 0.00 0.00 4.94
2166 2685 4.791069 TCCCTACCTCCCCCGTGC 62.791 72.222 0.00 0.00 0.00 5.34
2210 2729 4.475444 CCCCGCCCTCCTCCTACA 62.475 72.222 0.00 0.00 0.00 2.74
2211 2730 2.840102 CCCGCCCTCCTCCTACAG 60.840 72.222 0.00 0.00 0.00 2.74
2212 2731 3.541713 CCGCCCTCCTCCTACAGC 61.542 72.222 0.00 0.00 0.00 4.40
2213 2732 3.541713 CGCCCTCCTCCTACAGCC 61.542 72.222 0.00 0.00 0.00 4.85
2214 2733 2.041405 GCCCTCCTCCTACAGCCT 60.041 66.667 0.00 0.00 0.00 4.58
2215 2734 2.137528 GCCCTCCTCCTACAGCCTC 61.138 68.421 0.00 0.00 0.00 4.70
2216 2735 1.830408 CCCTCCTCCTACAGCCTCG 60.830 68.421 0.00 0.00 0.00 4.63
2217 2736 2.494530 CCTCCTCCTACAGCCTCGC 61.495 68.421 0.00 0.00 0.00 5.03
2218 2737 2.442272 TCCTCCTACAGCCTCGCC 60.442 66.667 0.00 0.00 0.00 5.54
2219 2738 3.541713 CCTCCTACAGCCTCGCCC 61.542 72.222 0.00 0.00 0.00 6.13
2220 2739 3.541713 CTCCTACAGCCTCGCCCC 61.542 72.222 0.00 0.00 0.00 5.80
2221 2740 4.075793 TCCTACAGCCTCGCCCCT 62.076 66.667 0.00 0.00 0.00 4.79
2222 2741 3.541713 CCTACAGCCTCGCCCCTC 61.542 72.222 0.00 0.00 0.00 4.30
2223 2742 3.541713 CTACAGCCTCGCCCCTCC 61.542 72.222 0.00 0.00 0.00 4.30
2224 2743 4.075793 TACAGCCTCGCCCCTCCT 62.076 66.667 0.00 0.00 0.00 3.69
2267 2786 4.966787 GGGGCGTCACAGGGCAAA 62.967 66.667 0.00 0.00 0.00 3.68
2268 2787 3.365265 GGGCGTCACAGGGCAAAG 61.365 66.667 0.00 0.00 0.00 2.77
2269 2788 4.043200 GGCGTCACAGGGCAAAGC 62.043 66.667 0.00 0.00 0.00 3.51
2307 2826 3.541713 GGCGGCTTCTCCTCGGAT 61.542 66.667 0.00 0.00 0.00 4.18
2308 2827 2.028337 GCGGCTTCTCCTCGGATC 59.972 66.667 0.00 0.00 0.00 3.36
2309 2828 2.494530 GCGGCTTCTCCTCGGATCT 61.495 63.158 0.00 0.00 0.00 2.75
2310 2829 1.657556 CGGCTTCTCCTCGGATCTC 59.342 63.158 0.00 0.00 0.00 2.75
2311 2830 1.657556 GGCTTCTCCTCGGATCTCG 59.342 63.158 0.00 0.00 40.90 4.04
2312 2831 0.820074 GGCTTCTCCTCGGATCTCGA 60.820 60.000 6.21 6.21 46.77 4.04
2321 2840 1.032794 TCGGATCTCGATCTGGTTGG 58.967 55.000 14.07 0.00 43.74 3.77
2322 2841 0.032678 CGGATCTCGATCTGGTTGGG 59.967 60.000 7.68 0.00 42.43 4.12
2323 2842 1.414158 GGATCTCGATCTGGTTGGGA 58.586 55.000 6.84 0.00 37.92 4.37
2324 2843 1.342819 GGATCTCGATCTGGTTGGGAG 59.657 57.143 6.84 0.00 37.92 4.30
2325 2844 1.342819 GATCTCGATCTGGTTGGGAGG 59.657 57.143 0.00 0.00 35.04 4.30
2326 2845 1.144936 CTCGATCTGGTTGGGAGGC 59.855 63.158 0.00 0.00 0.00 4.70
2327 2846 2.202932 CGATCTGGTTGGGAGGCG 60.203 66.667 0.00 0.00 0.00 5.52
2328 2847 2.190578 GATCTGGTTGGGAGGCGG 59.809 66.667 0.00 0.00 0.00 6.13
2329 2848 4.115199 ATCTGGTTGGGAGGCGGC 62.115 66.667 0.00 0.00 0.00 6.53
2347 2866 2.841988 GCTCCTCTCCGGCCAGAT 60.842 66.667 2.24 0.00 0.00 2.90
2348 2867 2.866726 GCTCCTCTCCGGCCAGATC 61.867 68.421 2.24 0.00 0.00 2.75
2349 2868 2.519541 TCCTCTCCGGCCAGATCG 60.520 66.667 2.24 0.00 0.00 3.69
2359 2878 4.592192 CCAGATCGGCGGCGACAT 62.592 66.667 37.06 24.40 0.00 3.06
2360 2879 3.333189 CAGATCGGCGGCGACATG 61.333 66.667 37.06 30.50 0.00 3.21
2361 2880 4.592192 AGATCGGCGGCGACATGG 62.592 66.667 37.06 4.28 0.00 3.66
2362 2881 4.585526 GATCGGCGGCGACATGGA 62.586 66.667 37.06 14.09 0.00 3.41
2363 2882 4.155733 ATCGGCGGCGACATGGAA 62.156 61.111 37.06 13.24 0.00 3.53
2364 2883 4.812476 TCGGCGGCGACATGGAAG 62.812 66.667 31.46 0.00 0.00 3.46
2366 2885 3.499737 GGCGGCGACATGGAAGTG 61.500 66.667 12.98 0.00 0.00 3.16
2367 2886 3.499737 GCGGCGACATGGAAGTGG 61.500 66.667 12.98 0.00 0.00 4.00
2368 2887 2.047274 CGGCGACATGGAAGTGGT 60.047 61.111 0.00 0.00 0.00 4.16
2369 2888 2.390599 CGGCGACATGGAAGTGGTG 61.391 63.158 0.00 0.00 0.00 4.17
2370 2889 2.690778 GGCGACATGGAAGTGGTGC 61.691 63.158 0.00 0.00 0.00 5.01
2371 2890 3.027170 GCGACATGGAAGTGGTGCG 62.027 63.158 0.00 0.00 0.00 5.34
2372 2891 2.390599 CGACATGGAAGTGGTGCGG 61.391 63.158 0.00 0.00 0.00 5.69
2373 2892 2.672996 ACATGGAAGTGGTGCGGC 60.673 61.111 0.00 0.00 0.00 6.53
2374 2893 3.803082 CATGGAAGTGGTGCGGCG 61.803 66.667 0.51 0.51 0.00 6.46
2391 2910 3.721706 GGCAGTGGGGGAGGACAG 61.722 72.222 0.00 0.00 0.00 3.51
2392 2911 4.416738 GCAGTGGGGGAGGACAGC 62.417 72.222 0.00 0.00 0.00 4.40
2393 2912 2.930019 CAGTGGGGGAGGACAGCA 60.930 66.667 0.00 0.00 0.00 4.41
2394 2913 2.930562 AGTGGGGGAGGACAGCAC 60.931 66.667 0.00 0.00 0.00 4.40
2395 2914 4.035102 GTGGGGGAGGACAGCACC 62.035 72.222 0.00 0.00 0.00 5.01
2396 2915 4.590553 TGGGGGAGGACAGCACCA 62.591 66.667 0.00 0.00 0.00 4.17
2397 2916 3.721706 GGGGGAGGACAGCACCAG 61.722 72.222 0.00 0.00 0.00 4.00
2398 2917 4.416738 GGGGAGGACAGCACCAGC 62.417 72.222 0.00 0.00 42.56 4.85
2399 2918 3.640407 GGGAGGACAGCACCAGCA 61.640 66.667 0.00 0.00 45.49 4.41
2400 2919 2.431683 GGAGGACAGCACCAGCAA 59.568 61.111 0.00 0.00 45.49 3.91
2401 2920 1.968540 GGAGGACAGCACCAGCAAC 60.969 63.158 0.00 0.00 45.49 4.17
2402 2921 2.281070 AGGACAGCACCAGCAACG 60.281 61.111 0.00 0.00 45.49 4.10
2403 2922 3.357079 GGACAGCACCAGCAACGG 61.357 66.667 0.00 0.00 45.49 4.44
2404 2923 4.030452 GACAGCACCAGCAACGGC 62.030 66.667 0.00 0.00 45.49 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.374042 TCCCCGCCTGAATTTCATAAA 57.626 42.857 0.00 0.00 0.00 1.40
1 2 3.020984 GTTCCCCGCCTGAATTTCATAA 58.979 45.455 0.00 0.00 0.00 1.90
2 3 2.650322 GTTCCCCGCCTGAATTTCATA 58.350 47.619 0.00 0.00 0.00 2.15
3 4 1.474330 GTTCCCCGCCTGAATTTCAT 58.526 50.000 0.00 0.00 0.00 2.57
4 5 0.610785 GGTTCCCCGCCTGAATTTCA 60.611 55.000 0.00 0.00 0.00 2.69
5 6 0.323451 AGGTTCCCCGCCTGAATTTC 60.323 55.000 0.00 0.00 34.56 2.17
6 7 0.323451 GAGGTTCCCCGCCTGAATTT 60.323 55.000 0.00 0.00 36.29 1.82
7 8 1.208165 AGAGGTTCCCCGCCTGAATT 61.208 55.000 0.00 0.00 36.29 2.17
8 9 1.616628 AGAGGTTCCCCGCCTGAAT 60.617 57.895 0.00 0.00 36.29 2.57
9 10 2.203938 AGAGGTTCCCCGCCTGAA 60.204 61.111 0.00 0.00 36.29 3.02
10 11 2.683933 GAGAGGTTCCCCGCCTGA 60.684 66.667 0.00 0.00 36.29 3.86
11 12 3.787001 GGAGAGGTTCCCCGCCTG 61.787 72.222 0.00 0.00 40.37 4.85
18 19 2.971901 TTTCAAAGGGGAGAGGTTCC 57.028 50.000 0.00 0.00 46.00 3.62
19 20 4.832823 TGAATTTTCAAAGGGGAGAGGTTC 59.167 41.667 0.00 0.00 33.55 3.62
20 21 4.814967 TGAATTTTCAAAGGGGAGAGGTT 58.185 39.130 0.00 0.00 33.55 3.50
21 22 4.469469 TGAATTTTCAAAGGGGAGAGGT 57.531 40.909 0.00 0.00 33.55 3.85
62 63 9.759473 CCCTCCATCCATAAATATCTAAAACAT 57.241 33.333 0.00 0.00 0.00 2.71
63 64 8.954729 TCCCTCCATCCATAAATATCTAAAACA 58.045 33.333 0.00 0.00 0.00 2.83
64 65 9.454859 CTCCCTCCATCCATAAATATCTAAAAC 57.545 37.037 0.00 0.00 0.00 2.43
65 66 9.182642 ACTCCCTCCATCCATAAATATCTAAAA 57.817 33.333 0.00 0.00 0.00 1.52
66 67 8.757307 ACTCCCTCCATCCATAAATATCTAAA 57.243 34.615 0.00 0.00 0.00 1.85
69 70 8.940012 AATACTCCCTCCATCCATAAATATCT 57.060 34.615 0.00 0.00 0.00 1.98
76 77 8.924303 CGATATTTAATACTCCCTCCATCCATA 58.076 37.037 0.00 0.00 0.00 2.74
80 81 6.535508 GCACGATATTTAATACTCCCTCCATC 59.464 42.308 0.00 0.00 0.00 3.51
130 131 7.865889 CACTTTCCACATTTCCTTACTTTTACC 59.134 37.037 0.00 0.00 0.00 2.85
307 308 6.208644 GCTGGATGATTTGCGTACATAATTT 58.791 36.000 0.00 0.00 0.00 1.82
357 358 2.764944 CTGCTTCACAGGCTAGCTG 58.235 57.895 15.72 13.05 43.19 4.24
549 551 3.333029 ACTGTTTGGCTTGCTGTTTTT 57.667 38.095 0.00 0.00 0.00 1.94
550 552 4.159506 TCTTACTGTTTGGCTTGCTGTTTT 59.840 37.500 0.00 0.00 0.00 2.43
551 553 3.699038 TCTTACTGTTTGGCTTGCTGTTT 59.301 39.130 0.00 0.00 0.00 2.83
552 554 3.066760 GTCTTACTGTTTGGCTTGCTGTT 59.933 43.478 0.00 0.00 0.00 3.16
553 555 2.618709 GTCTTACTGTTTGGCTTGCTGT 59.381 45.455 0.00 0.00 0.00 4.40
841 1195 7.935338 AATAAGCCGATGAAAATATGCAAAG 57.065 32.000 0.00 0.00 0.00 2.77
1154 1580 2.972505 GTCACACCTGTGCCACCG 60.973 66.667 0.17 0.00 45.25 4.94
1172 1598 2.670592 GGGTTTACGGCCACGCTT 60.671 61.111 2.24 0.00 46.04 4.68
1184 1610 1.147817 ACCTTGCTCATCTTGGGGTTT 59.852 47.619 0.00 0.00 0.00 3.27
1507 1937 0.250901 AAGCATGTCTTTCCGCTGGT 60.251 50.000 0.00 0.00 34.26 4.00
1603 2036 2.049894 TTCGCACGCAAGCTCGTA 60.050 55.556 0.00 0.00 41.21 3.43
1731 2250 9.088512 TGCGTGAACATTTTGTTAGTTTAATTT 57.911 25.926 0.00 0.00 41.28 1.82
1732 2251 8.635877 TGCGTGAACATTTTGTTAGTTTAATT 57.364 26.923 0.00 0.00 41.28 1.40
1733 2252 8.698854 CATGCGTGAACATTTTGTTAGTTTAAT 58.301 29.630 0.00 0.00 41.28 1.40
1734 2253 7.702772 ACATGCGTGAACATTTTGTTAGTTTAA 59.297 29.630 14.17 0.00 41.28 1.52
1735 2254 7.197017 ACATGCGTGAACATTTTGTTAGTTTA 58.803 30.769 14.17 0.00 41.28 2.01
1736 2255 6.039616 ACATGCGTGAACATTTTGTTAGTTT 58.960 32.000 14.17 0.00 41.28 2.66
1737 2256 5.587289 ACATGCGTGAACATTTTGTTAGTT 58.413 33.333 14.17 0.00 41.28 2.24
1738 2257 5.181690 ACATGCGTGAACATTTTGTTAGT 57.818 34.783 14.17 0.00 41.28 2.24
1739 2258 5.115472 GTGACATGCGTGAACATTTTGTTAG 59.885 40.000 14.17 0.00 41.28 2.34
1740 2259 4.973051 GTGACATGCGTGAACATTTTGTTA 59.027 37.500 14.17 0.00 41.28 2.41
1741 2260 3.796178 GTGACATGCGTGAACATTTTGTT 59.204 39.130 14.17 0.00 44.37 2.83
1742 2261 3.371168 GTGACATGCGTGAACATTTTGT 58.629 40.909 14.17 0.00 0.00 2.83
1743 2262 2.725723 GGTGACATGCGTGAACATTTTG 59.274 45.455 14.17 0.00 0.00 2.44
1744 2263 2.360483 TGGTGACATGCGTGAACATTTT 59.640 40.909 14.17 0.00 33.40 1.82
1745 2264 1.952990 TGGTGACATGCGTGAACATTT 59.047 42.857 14.17 0.00 33.40 2.32
1746 2265 1.603456 TGGTGACATGCGTGAACATT 58.397 45.000 14.17 0.00 33.40 2.71
1747 2266 1.603456 TTGGTGACATGCGTGAACAT 58.397 45.000 14.17 0.00 42.32 2.71
1748 2267 1.064803 GTTTGGTGACATGCGTGAACA 59.935 47.619 14.17 9.53 42.32 3.18
1749 2268 1.064803 TGTTTGGTGACATGCGTGAAC 59.935 47.619 14.17 10.22 42.32 3.18
1750 2269 1.383523 TGTTTGGTGACATGCGTGAA 58.616 45.000 14.17 0.00 42.32 3.18
1751 2270 1.603456 ATGTTTGGTGACATGCGTGA 58.397 45.000 14.17 0.00 42.32 4.35
1752 2271 2.420628 AATGTTTGGTGACATGCGTG 57.579 45.000 3.82 3.82 40.03 5.34
1753 2272 6.449635 AATATAATGTTTGGTGACATGCGT 57.550 33.333 0.00 0.00 40.03 5.24
1754 2273 7.754069 AAAATATAATGTTTGGTGACATGCG 57.246 32.000 0.00 0.00 40.03 4.73
1802 2321 9.932699 CAAAATGTTAATGCATGTCAAGAAAAA 57.067 25.926 0.00 0.00 0.00 1.94
1803 2322 9.107177 ACAAAATGTTAATGCATGTCAAGAAAA 57.893 25.926 0.00 0.00 0.00 2.29
1804 2323 8.659925 ACAAAATGTTAATGCATGTCAAGAAA 57.340 26.923 0.00 0.00 0.00 2.52
1805 2324 8.659925 AACAAAATGTTAATGCATGTCAAGAA 57.340 26.923 0.00 0.00 39.09 2.52
1806 2325 9.755804 TTAACAAAATGTTAATGCATGTCAAGA 57.244 25.926 0.00 0.00 44.93 3.02
1868 2387 9.813826 GGAGGTAGTAGTTATGTACCCTTATTA 57.186 37.037 0.00 0.00 37.52 0.98
1869 2388 7.732140 GGGAGGTAGTAGTTATGTACCCTTATT 59.268 40.741 0.00 0.00 37.52 1.40
1870 2389 7.076045 AGGGAGGTAGTAGTTATGTACCCTTAT 59.924 40.741 0.00 0.00 40.68 1.73
1871 2390 6.394039 AGGGAGGTAGTAGTTATGTACCCTTA 59.606 42.308 0.00 0.00 40.68 2.69
1872 2391 5.197395 AGGGAGGTAGTAGTTATGTACCCTT 59.803 44.000 0.00 0.00 40.68 3.95
1873 2392 4.736055 AGGGAGGTAGTAGTTATGTACCCT 59.264 45.833 0.00 0.00 37.52 4.34
1874 2393 5.072129 AGGGAGGTAGTAGTTATGTACCC 57.928 47.826 0.00 0.00 37.52 3.69
1875 2394 5.076182 GGAGGGAGGTAGTAGTTATGTACC 58.924 50.000 0.00 0.00 37.13 3.34
1876 2395 4.759183 CGGAGGGAGGTAGTAGTTATGTAC 59.241 50.000 0.00 0.00 0.00 2.90
1877 2396 4.978099 CGGAGGGAGGTAGTAGTTATGTA 58.022 47.826 0.00 0.00 0.00 2.29
1878 2397 3.830121 CGGAGGGAGGTAGTAGTTATGT 58.170 50.000 0.00 0.00 0.00 2.29
1895 2414 3.489391 GGGACCAATAAACCCGGAG 57.511 57.895 0.73 0.00 34.03 4.63
1909 2428 3.963129 TGACAGGAAATACAATGGGGAC 58.037 45.455 0.00 0.00 0.00 4.46
1910 2429 4.666412 TTGACAGGAAATACAATGGGGA 57.334 40.909 0.00 0.00 0.00 4.81
1911 2430 5.937975 ATTTGACAGGAAATACAATGGGG 57.062 39.130 0.00 0.00 0.00 4.96
1912 2431 9.717942 TTAAAATTTGACAGGAAATACAATGGG 57.282 29.630 0.00 0.00 0.00 4.00
1946 2465 9.900710 ACATGCGTGAATATTTTGTTAGTTTAA 57.099 25.926 14.17 0.00 0.00 1.52
1947 2466 9.549509 GACATGCGTGAATATTTTGTTAGTTTA 57.450 29.630 14.17 0.00 0.00 2.01
1948 2467 8.079203 TGACATGCGTGAATATTTTGTTAGTTT 58.921 29.630 14.17 0.00 0.00 2.66
1949 2468 7.537306 GTGACATGCGTGAATATTTTGTTAGTT 59.463 33.333 14.17 0.00 0.00 2.24
1950 2469 7.021196 GTGACATGCGTGAATATTTTGTTAGT 58.979 34.615 14.17 0.00 0.00 2.24
1951 2470 6.468956 GGTGACATGCGTGAATATTTTGTTAG 59.531 38.462 14.17 0.00 0.00 2.34
1952 2471 6.072452 TGGTGACATGCGTGAATATTTTGTTA 60.072 34.615 14.17 0.00 33.40 2.41
1953 2472 5.160641 GGTGACATGCGTGAATATTTTGTT 58.839 37.500 14.17 0.00 0.00 2.83
1954 2473 4.217334 TGGTGACATGCGTGAATATTTTGT 59.783 37.500 14.17 0.00 33.40 2.83
1955 2474 4.731720 TGGTGACATGCGTGAATATTTTG 58.268 39.130 14.17 0.00 33.40 2.44
1956 2475 5.384063 TTGGTGACATGCGTGAATATTTT 57.616 34.783 14.17 0.00 42.32 1.82
1957 2476 5.160641 GTTTGGTGACATGCGTGAATATTT 58.839 37.500 14.17 0.00 42.32 1.40
1958 2477 4.217334 TGTTTGGTGACATGCGTGAATATT 59.783 37.500 14.17 0.00 42.32 1.28
1959 2478 3.755905 TGTTTGGTGACATGCGTGAATAT 59.244 39.130 14.17 0.00 42.32 1.28
1960 2479 3.142174 TGTTTGGTGACATGCGTGAATA 58.858 40.909 14.17 0.00 42.32 1.75
1961 2480 1.952990 TGTTTGGTGACATGCGTGAAT 59.047 42.857 14.17 0.00 42.32 2.57
1962 2481 1.383523 TGTTTGGTGACATGCGTGAA 58.616 45.000 14.17 0.00 42.32 3.18
1963 2482 1.603456 ATGTTTGGTGACATGCGTGA 58.397 45.000 14.17 0.00 42.32 4.35
1964 2483 2.420628 AATGTTTGGTGACATGCGTG 57.579 45.000 3.82 3.82 40.03 5.34
1965 2484 6.449635 AATATAATGTTTGGTGACATGCGT 57.550 33.333 0.00 0.00 40.03 5.24
1966 2485 7.754069 AAAATATAATGTTTGGTGACATGCG 57.246 32.000 0.00 0.00 40.03 4.73
1967 2486 9.149225 TCAAAAATATAATGTTTGGTGACATGC 57.851 29.630 0.00 0.00 40.03 4.06
2015 2534 9.577110 GCATGTCAAGAAAAATTATCTCATTGA 57.423 29.630 0.00 0.00 0.00 2.57
2016 2535 9.361315 TGCATGTCAAGAAAAATTATCTCATTG 57.639 29.630 0.00 0.00 0.00 2.82
2027 2546 9.932699 CAAAATGTTAATGCATGTCAAGAAAAA 57.067 25.926 0.00 0.00 0.00 1.94
2028 2547 9.107177 ACAAAATGTTAATGCATGTCAAGAAAA 57.893 25.926 0.00 0.00 0.00 2.29
2029 2548 8.659925 ACAAAATGTTAATGCATGTCAAGAAA 57.340 26.923 0.00 0.00 0.00 2.52
2030 2549 8.659925 AACAAAATGTTAATGCATGTCAAGAA 57.340 26.923 0.00 0.00 39.09 2.52
2031 2550 9.409312 CTAACAAAATGTTAATGCATGTCAAGA 57.591 29.630 0.00 0.00 41.70 3.02
2032 2551 9.195411 ACTAACAAAATGTTAATGCATGTCAAG 57.805 29.630 0.00 0.00 41.70 3.02
2033 2552 9.539825 AACTAACAAAATGTTAATGCATGTCAA 57.460 25.926 0.00 0.00 41.70 3.18
2066 2585 9.796120 CCTTTGTAGTTTGTGAATTTTGACTAA 57.204 29.630 0.00 0.00 0.00 2.24
2067 2586 8.410141 CCCTTTGTAGTTTGTGAATTTTGACTA 58.590 33.333 0.00 0.00 0.00 2.59
2068 2587 7.264947 CCCTTTGTAGTTTGTGAATTTTGACT 58.735 34.615 0.00 0.00 0.00 3.41
2069 2588 6.478673 CCCCTTTGTAGTTTGTGAATTTTGAC 59.521 38.462 0.00 0.00 0.00 3.18
2070 2589 6.381420 TCCCCTTTGTAGTTTGTGAATTTTGA 59.619 34.615 0.00 0.00 0.00 2.69
2071 2590 6.578023 TCCCCTTTGTAGTTTGTGAATTTTG 58.422 36.000 0.00 0.00 0.00 2.44
2072 2591 6.800072 TCCCCTTTGTAGTTTGTGAATTTT 57.200 33.333 0.00 0.00 0.00 1.82
2073 2592 6.782494 AGATCCCCTTTGTAGTTTGTGAATTT 59.218 34.615 0.00 0.00 0.00 1.82
2074 2593 6.314917 AGATCCCCTTTGTAGTTTGTGAATT 58.685 36.000 0.00 0.00 0.00 2.17
2075 2594 5.892348 AGATCCCCTTTGTAGTTTGTGAAT 58.108 37.500 0.00 0.00 0.00 2.57
2076 2595 5.319043 AGATCCCCTTTGTAGTTTGTGAA 57.681 39.130 0.00 0.00 0.00 3.18
2077 2596 4.993705 AGATCCCCTTTGTAGTTTGTGA 57.006 40.909 0.00 0.00 0.00 3.58
2078 2597 8.674607 GTTTATAGATCCCCTTTGTAGTTTGTG 58.325 37.037 0.00 0.00 0.00 3.33
2079 2598 7.832685 GGTTTATAGATCCCCTTTGTAGTTTGT 59.167 37.037 0.00 0.00 0.00 2.83
2080 2599 7.832187 TGGTTTATAGATCCCCTTTGTAGTTTG 59.168 37.037 0.00 0.00 0.00 2.93
2081 2600 7.935405 TGGTTTATAGATCCCCTTTGTAGTTT 58.065 34.615 0.00 0.00 0.00 2.66
2082 2601 7.366551 CCTGGTTTATAGATCCCCTTTGTAGTT 60.367 40.741 0.00 0.00 0.00 2.24
2083 2602 6.101296 CCTGGTTTATAGATCCCCTTTGTAGT 59.899 42.308 0.00 0.00 0.00 2.73
2084 2603 6.329197 TCCTGGTTTATAGATCCCCTTTGTAG 59.671 42.308 0.00 0.00 0.00 2.74
2085 2604 6.100714 GTCCTGGTTTATAGATCCCCTTTGTA 59.899 42.308 0.00 0.00 0.00 2.41
2086 2605 5.043762 TCCTGGTTTATAGATCCCCTTTGT 58.956 41.667 0.00 0.00 0.00 2.83
2087 2606 5.377478 GTCCTGGTTTATAGATCCCCTTTG 58.623 45.833 0.00 0.00 0.00 2.77
2088 2607 4.102681 CGTCCTGGTTTATAGATCCCCTTT 59.897 45.833 0.00 0.00 0.00 3.11
2089 2608 3.646637 CGTCCTGGTTTATAGATCCCCTT 59.353 47.826 0.00 0.00 0.00 3.95
2090 2609 3.116862 TCGTCCTGGTTTATAGATCCCCT 60.117 47.826 0.00 0.00 0.00 4.79
2091 2610 3.236896 TCGTCCTGGTTTATAGATCCCC 58.763 50.000 0.00 0.00 0.00 4.81
2092 2611 4.262506 CCTTCGTCCTGGTTTATAGATCCC 60.263 50.000 0.00 0.00 0.00 3.85
2093 2612 4.344390 ACCTTCGTCCTGGTTTATAGATCC 59.656 45.833 0.00 0.00 31.62 3.36
2094 2613 5.532664 ACCTTCGTCCTGGTTTATAGATC 57.467 43.478 0.00 0.00 31.62 2.75
2095 2614 6.134754 ACTACCTTCGTCCTGGTTTATAGAT 58.865 40.000 0.00 0.00 37.74 1.98
2096 2615 5.513233 ACTACCTTCGTCCTGGTTTATAGA 58.487 41.667 0.00 0.00 37.74 1.98
2097 2616 5.848833 ACTACCTTCGTCCTGGTTTATAG 57.151 43.478 0.00 0.00 37.74 1.31
2098 2617 6.891908 ACTTACTACCTTCGTCCTGGTTTATA 59.108 38.462 0.00 0.00 37.74 0.98
2099 2618 5.718607 ACTTACTACCTTCGTCCTGGTTTAT 59.281 40.000 0.00 0.00 37.74 1.40
2100 2619 5.047802 CACTTACTACCTTCGTCCTGGTTTA 60.048 44.000 0.00 0.00 37.74 2.01
2101 2620 3.899980 ACTTACTACCTTCGTCCTGGTTT 59.100 43.478 0.00 0.00 37.74 3.27
2102 2621 3.257624 CACTTACTACCTTCGTCCTGGTT 59.742 47.826 0.00 0.00 37.74 3.67
2103 2622 2.824341 CACTTACTACCTTCGTCCTGGT 59.176 50.000 0.00 0.00 40.12 4.00
2104 2623 2.824341 ACACTTACTACCTTCGTCCTGG 59.176 50.000 0.00 0.00 0.00 4.45
2105 2624 3.504906 TCACACTTACTACCTTCGTCCTG 59.495 47.826 0.00 0.00 0.00 3.86
2106 2625 3.759581 TCACACTTACTACCTTCGTCCT 58.240 45.455 0.00 0.00 0.00 3.85
2107 2626 4.483311 CTTCACACTTACTACCTTCGTCC 58.517 47.826 0.00 0.00 0.00 4.79
2108 2627 3.919197 GCTTCACACTTACTACCTTCGTC 59.081 47.826 0.00 0.00 0.00 4.20
2109 2628 3.319972 TGCTTCACACTTACTACCTTCGT 59.680 43.478 0.00 0.00 0.00 3.85
2110 2629 3.909430 TGCTTCACACTTACTACCTTCG 58.091 45.455 0.00 0.00 0.00 3.79
2111 2630 4.686554 CACTGCTTCACACTTACTACCTTC 59.313 45.833 0.00 0.00 0.00 3.46
2112 2631 4.344102 TCACTGCTTCACACTTACTACCTT 59.656 41.667 0.00 0.00 0.00 3.50
2113 2632 3.895656 TCACTGCTTCACACTTACTACCT 59.104 43.478 0.00 0.00 0.00 3.08
2114 2633 3.988517 GTCACTGCTTCACACTTACTACC 59.011 47.826 0.00 0.00 0.00 3.18
2115 2634 4.872664 AGTCACTGCTTCACACTTACTAC 58.127 43.478 0.00 0.00 0.00 2.73
2116 2635 4.022242 GGAGTCACTGCTTCACACTTACTA 60.022 45.833 0.00 0.00 0.00 1.82
2117 2636 3.243907 GGAGTCACTGCTTCACACTTACT 60.244 47.826 0.00 0.00 0.00 2.24
2118 2637 3.060602 GGAGTCACTGCTTCACACTTAC 58.939 50.000 0.00 0.00 0.00 2.34
2119 2638 2.037251 GGGAGTCACTGCTTCACACTTA 59.963 50.000 0.00 0.00 0.00 2.24
2120 2639 1.202698 GGGAGTCACTGCTTCACACTT 60.203 52.381 0.00 0.00 0.00 3.16
2121 2640 0.394565 GGGAGTCACTGCTTCACACT 59.605 55.000 0.00 0.00 0.00 3.55
2122 2641 0.394565 AGGGAGTCACTGCTTCACAC 59.605 55.000 0.00 0.00 0.00 3.82
2123 2642 0.681733 GAGGGAGTCACTGCTTCACA 59.318 55.000 0.00 0.00 29.19 3.58
2124 2643 0.036858 GGAGGGAGTCACTGCTTCAC 60.037 60.000 10.69 0.00 30.19 3.18
2125 2644 0.178921 AGGAGGGAGTCACTGCTTCA 60.179 55.000 11.19 0.00 32.32 3.02
2126 2645 0.248843 CAGGAGGGAGTCACTGCTTC 59.751 60.000 14.65 0.00 34.17 3.86
2127 2646 0.472734 ACAGGAGGGAGTCACTGCTT 60.473 55.000 14.65 3.32 34.17 3.91
2128 2647 0.902516 GACAGGAGGGAGTCACTGCT 60.903 60.000 11.19 11.19 37.08 4.24
2129 2648 1.594310 GACAGGAGGGAGTCACTGC 59.406 63.158 5.63 5.63 34.40 4.40
2130 2649 0.252012 AGGACAGGAGGGAGTCACTG 60.252 60.000 0.00 0.48 36.50 3.66
2131 2650 0.040499 GAGGACAGGAGGGAGTCACT 59.960 60.000 0.00 0.00 36.50 3.41
2132 2651 0.973496 GGAGGACAGGAGGGAGTCAC 60.973 65.000 0.00 0.00 36.50 3.67
2133 2652 1.388531 GGAGGACAGGAGGGAGTCA 59.611 63.158 0.00 0.00 36.50 3.41
2134 2653 1.382009 GGGAGGACAGGAGGGAGTC 60.382 68.421 0.00 0.00 0.00 3.36
2135 2654 0.555369 TAGGGAGGACAGGAGGGAGT 60.555 60.000 0.00 0.00 0.00 3.85
2136 2655 0.105913 GTAGGGAGGACAGGAGGGAG 60.106 65.000 0.00 0.00 0.00 4.30
2137 2656 1.591280 GGTAGGGAGGACAGGAGGGA 61.591 65.000 0.00 0.00 0.00 4.20
2138 2657 1.075151 GGTAGGGAGGACAGGAGGG 60.075 68.421 0.00 0.00 0.00 4.30
2139 2658 0.105913 GAGGTAGGGAGGACAGGAGG 60.106 65.000 0.00 0.00 0.00 4.30
2140 2659 0.105913 GGAGGTAGGGAGGACAGGAG 60.106 65.000 0.00 0.00 0.00 3.69
2141 2660 1.591280 GGGAGGTAGGGAGGACAGGA 61.591 65.000 0.00 0.00 0.00 3.86
2142 2661 1.075151 GGGAGGTAGGGAGGACAGG 60.075 68.421 0.00 0.00 0.00 4.00
2143 2662 1.075151 GGGGAGGTAGGGAGGACAG 60.075 68.421 0.00 0.00 0.00 3.51
2144 2663 2.643808 GGGGGAGGTAGGGAGGACA 61.644 68.421 0.00 0.00 0.00 4.02
2145 2664 2.286213 GGGGGAGGTAGGGAGGAC 59.714 72.222 0.00 0.00 0.00 3.85
2146 2665 3.436028 CGGGGGAGGTAGGGAGGA 61.436 72.222 0.00 0.00 0.00 3.71
2147 2666 3.763757 ACGGGGGAGGTAGGGAGG 61.764 72.222 0.00 0.00 0.00 4.30
2148 2667 2.444140 CACGGGGGAGGTAGGGAG 60.444 72.222 0.00 0.00 0.00 4.30
2149 2668 4.791069 GCACGGGGGAGGTAGGGA 62.791 72.222 0.00 0.00 0.00 4.20
2193 2712 4.475444 TGTAGGAGGAGGGCGGGG 62.475 72.222 0.00 0.00 0.00 5.73
2194 2713 2.840102 CTGTAGGAGGAGGGCGGG 60.840 72.222 0.00 0.00 0.00 6.13
2195 2714 3.541713 GCTGTAGGAGGAGGGCGG 61.542 72.222 0.00 0.00 0.00 6.13
2196 2715 3.541713 GGCTGTAGGAGGAGGGCG 61.542 72.222 0.00 0.00 0.00 6.13
2197 2716 2.041405 AGGCTGTAGGAGGAGGGC 60.041 66.667 0.00 0.00 0.00 5.19
2198 2717 1.830408 CGAGGCTGTAGGAGGAGGG 60.830 68.421 0.00 0.00 0.00 4.30
2199 2718 2.494530 GCGAGGCTGTAGGAGGAGG 61.495 68.421 0.00 0.00 0.00 4.30
2200 2719 2.494530 GGCGAGGCTGTAGGAGGAG 61.495 68.421 0.00 0.00 0.00 3.69
2201 2720 2.442272 GGCGAGGCTGTAGGAGGA 60.442 66.667 0.00 0.00 0.00 3.71
2202 2721 3.541713 GGGCGAGGCTGTAGGAGG 61.542 72.222 0.00 0.00 0.00 4.30
2203 2722 3.541713 GGGGCGAGGCTGTAGGAG 61.542 72.222 0.00 0.00 0.00 3.69
2204 2723 4.075793 AGGGGCGAGGCTGTAGGA 62.076 66.667 0.00 0.00 0.00 2.94
2205 2724 3.541713 GAGGGGCGAGGCTGTAGG 61.542 72.222 0.00 0.00 0.00 3.18
2206 2725 3.541713 GGAGGGGCGAGGCTGTAG 61.542 72.222 0.00 0.00 0.00 2.74
2207 2726 4.075793 AGGAGGGGCGAGGCTGTA 62.076 66.667 0.00 0.00 0.00 2.74
2250 2769 4.966787 TTTGCCCTGTGACGCCCC 62.967 66.667 0.00 0.00 0.00 5.80
2251 2770 3.365265 CTTTGCCCTGTGACGCCC 61.365 66.667 0.00 0.00 0.00 6.13
2252 2771 4.043200 GCTTTGCCCTGTGACGCC 62.043 66.667 0.00 0.00 0.00 5.68
2253 2772 4.043200 GGCTTTGCCCTGTGACGC 62.043 66.667 0.00 0.00 44.06 5.19
2290 2809 3.507597 GATCCGAGGAGAAGCCGCC 62.508 68.421 0.00 0.00 43.43 6.13
2291 2810 2.028337 GATCCGAGGAGAAGCCGC 59.972 66.667 0.00 0.00 43.43 6.53
2292 2811 1.657556 GAGATCCGAGGAGAAGCCG 59.342 63.158 0.00 0.00 43.43 5.52
2293 2812 0.820074 TCGAGATCCGAGGAGAAGCC 60.820 60.000 0.00 0.00 43.23 4.35
2294 2813 2.709170 TCGAGATCCGAGGAGAAGC 58.291 57.895 0.00 0.00 43.23 3.86
2303 2822 0.032678 CCCAACCAGATCGAGATCCG 59.967 60.000 9.27 0.00 38.58 4.18
2304 2823 1.342819 CTCCCAACCAGATCGAGATCC 59.657 57.143 9.27 0.00 38.58 3.36
2305 2824 1.342819 CCTCCCAACCAGATCGAGATC 59.657 57.143 5.00 5.00 38.09 2.75
2306 2825 1.418334 CCTCCCAACCAGATCGAGAT 58.582 55.000 0.00 0.00 0.00 2.75
2307 2826 1.330655 GCCTCCCAACCAGATCGAGA 61.331 60.000 0.00 0.00 0.00 4.04
2308 2827 1.144936 GCCTCCCAACCAGATCGAG 59.855 63.158 0.00 0.00 0.00 4.04
2309 2828 2.721167 CGCCTCCCAACCAGATCGA 61.721 63.158 0.00 0.00 0.00 3.59
2310 2829 2.202932 CGCCTCCCAACCAGATCG 60.203 66.667 0.00 0.00 0.00 3.69
2311 2830 2.190578 CCGCCTCCCAACCAGATC 59.809 66.667 0.00 0.00 0.00 2.75
2312 2831 4.115199 GCCGCCTCCCAACCAGAT 62.115 66.667 0.00 0.00 0.00 2.90
2330 2849 2.841988 ATCTGGCCGGAGAGGAGC 60.842 66.667 21.28 0.00 45.00 4.70
2331 2850 2.560119 CGATCTGGCCGGAGAGGAG 61.560 68.421 21.28 5.35 45.00 3.69
2332 2851 2.519541 CGATCTGGCCGGAGAGGA 60.520 66.667 21.28 0.00 45.00 3.71
2342 2861 4.592192 ATGTCGCCGCCGATCTGG 62.592 66.667 0.00 0.00 46.38 3.86
2343 2862 3.333189 CATGTCGCCGCCGATCTG 61.333 66.667 0.00 0.00 46.38 2.90
2344 2863 4.592192 CCATGTCGCCGCCGATCT 62.592 66.667 0.00 0.00 46.38 2.75
2345 2864 4.585526 TCCATGTCGCCGCCGATC 62.586 66.667 0.00 0.00 46.38 3.69
2346 2865 4.155733 TTCCATGTCGCCGCCGAT 62.156 61.111 0.00 0.00 46.38 4.18
2347 2866 4.812476 CTTCCATGTCGCCGCCGA 62.812 66.667 0.00 0.00 42.01 5.54
2349 2868 3.499737 CACTTCCATGTCGCCGCC 61.500 66.667 0.00 0.00 0.00 6.13
2350 2869 3.499737 CCACTTCCATGTCGCCGC 61.500 66.667 0.00 0.00 0.00 6.53
2351 2870 2.047274 ACCACTTCCATGTCGCCG 60.047 61.111 0.00 0.00 0.00 6.46
2352 2871 2.690778 GCACCACTTCCATGTCGCC 61.691 63.158 0.00 0.00 0.00 5.54
2353 2872 2.870372 GCACCACTTCCATGTCGC 59.130 61.111 0.00 0.00 0.00 5.19
2354 2873 2.390599 CCGCACCACTTCCATGTCG 61.391 63.158 0.00 0.00 0.00 4.35
2355 2874 2.690778 GCCGCACCACTTCCATGTC 61.691 63.158 0.00 0.00 0.00 3.06
2356 2875 2.672996 GCCGCACCACTTCCATGT 60.673 61.111 0.00 0.00 0.00 3.21
2357 2876 3.803082 CGCCGCACCACTTCCATG 61.803 66.667 0.00 0.00 0.00 3.66
2374 2893 3.721706 CTGTCCTCCCCCACTGCC 61.722 72.222 0.00 0.00 0.00 4.85
2375 2894 4.416738 GCTGTCCTCCCCCACTGC 62.417 72.222 0.00 0.00 0.00 4.40
2376 2895 2.930019 TGCTGTCCTCCCCCACTG 60.930 66.667 0.00 0.00 0.00 3.66
2377 2896 2.930562 GTGCTGTCCTCCCCCACT 60.931 66.667 0.00 0.00 0.00 4.00
2378 2897 4.035102 GGTGCTGTCCTCCCCCAC 62.035 72.222 0.00 0.00 0.00 4.61
2379 2898 4.590553 TGGTGCTGTCCTCCCCCA 62.591 66.667 0.00 0.00 0.00 4.96
2380 2899 3.721706 CTGGTGCTGTCCTCCCCC 61.722 72.222 0.00 0.00 0.00 5.40
2381 2900 4.416738 GCTGGTGCTGTCCTCCCC 62.417 72.222 0.00 0.00 36.03 4.81
2382 2901 3.196207 TTGCTGGTGCTGTCCTCCC 62.196 63.158 0.00 0.00 40.48 4.30
2383 2902 1.968540 GTTGCTGGTGCTGTCCTCC 60.969 63.158 0.00 0.00 40.48 4.30
2384 2903 2.320587 CGTTGCTGGTGCTGTCCTC 61.321 63.158 0.00 0.00 40.48 3.71
2385 2904 2.281070 CGTTGCTGGTGCTGTCCT 60.281 61.111 0.00 0.00 40.48 3.85
2386 2905 3.357079 CCGTTGCTGGTGCTGTCC 61.357 66.667 0.00 0.00 40.48 4.02
2387 2906 4.030452 GCCGTTGCTGGTGCTGTC 62.030 66.667 0.00 0.00 40.48 3.51
2392 2911 3.499737 GATCCGCCGTTGCTGGTG 61.500 66.667 0.00 0.00 39.29 4.17
2393 2912 3.706373 AGATCCGCCGTTGCTGGT 61.706 61.111 0.00 0.00 34.26 4.00
2394 2913 3.197790 CAGATCCGCCGTTGCTGG 61.198 66.667 0.00 0.00 34.43 4.85
2395 2914 3.197790 CCAGATCCGCCGTTGCTG 61.198 66.667 0.00 0.00 34.43 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.