Multiple sequence alignment - TraesCS3B01G237600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G237600 chr3B 100.000 4637 0 0 1 4637 372838896 372843532 0.000000e+00 8564
1 TraesCS3B01G237600 chr3D 95.850 3446 81 29 1 3415 277542090 277538676 0.000000e+00 5515
2 TraesCS3B01G237600 chr3D 92.724 1072 28 13 3411 4461 277538507 277537465 0.000000e+00 1502
3 TraesCS3B01G237600 chr3D 89.444 180 15 3 4459 4637 277537428 277537252 1.680000e-54 224
4 TraesCS3B01G237600 chr3A 95.545 3457 88 31 1 3412 361991563 361994998 0.000000e+00 5470
5 TraesCS3B01G237600 chr3A 92.338 1253 49 9 3406 4637 361995071 361996297 0.000000e+00 1738


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G237600 chr3B 372838896 372843532 4636 False 8564.000000 8564 100.000000 1 4637 1 chr3B.!!$F1 4636
1 TraesCS3B01G237600 chr3D 277537252 277542090 4838 True 2413.666667 5515 92.672667 1 4637 3 chr3D.!!$R1 4636
2 TraesCS3B01G237600 chr3A 361991563 361996297 4734 False 3604.000000 5470 93.941500 1 4637 2 chr3A.!!$F1 4636

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
712 716 0.253610 AACATAATTCGCCACCCCGA 59.746 50.0 0.00 0.00 35.09 5.14 F
1454 1503 0.902531 TTCCCCAAGATCGACCTCAC 59.097 55.0 0.00 0.00 0.00 3.51 F
1854 1905 0.975544 CTGAGTTTCACGAGTACGCG 59.024 55.0 17.76 17.76 43.96 6.01 F
3150 3201 1.103398 GTTTGATCCGCATCCCCCTG 61.103 60.0 0.00 0.00 0.00 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1964 2015 1.586422 TGTCTGCAGAGCAAGTTGAC 58.414 50.000 18.89 3.09 38.41 3.18 R
2399 2450 1.608717 AAGAGGCACGCAGTAGGGAG 61.609 60.000 0.00 0.00 41.61 4.30 R
3633 3858 3.609853 CAGTTACCTGCAGATGCCTTAA 58.390 45.455 17.39 0.00 41.18 1.85 R
4567 4853 0.693622 TTCGGGCCCTGTACAATTGA 59.306 50.000 22.43 2.67 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.795688 TGAATGAATCAGGATAGGGGC 57.204 47.619 0.00 0.00 33.04 5.80
45 46 3.266510 TGCACAGTTGAAGACTTCTGT 57.733 42.857 16.02 9.37 41.02 3.41
191 192 3.388345 AGTGAAGAAGAAGGTCGGTTC 57.612 47.619 0.00 0.00 0.00 3.62
192 193 2.037381 AGTGAAGAAGAAGGTCGGTTCC 59.963 50.000 0.00 0.00 0.00 3.62
193 194 1.346722 TGAAGAAGAAGGTCGGTTCCC 59.653 52.381 0.00 0.00 0.00 3.97
194 195 1.624312 GAAGAAGAAGGTCGGTTCCCT 59.376 52.381 0.00 0.00 0.00 4.20
195 196 1.730851 AGAAGAAGGTCGGTTCCCTT 58.269 50.000 0.00 0.00 44.98 3.95
196 197 2.898662 AGAAGAAGGTCGGTTCCCTTA 58.101 47.619 0.00 0.00 42.37 2.69
197 198 3.451890 AGAAGAAGGTCGGTTCCCTTAT 58.548 45.455 0.00 0.00 42.37 1.73
198 199 3.844804 AGAAGAAGGTCGGTTCCCTTATT 59.155 43.478 0.00 0.00 44.08 1.40
199 200 4.288887 AGAAGAAGGTCGGTTCCCTTATTT 59.711 41.667 1.11 0.00 42.09 1.40
417 418 2.677902 CGATTTGGAACTAGCTGAGCCA 60.678 50.000 0.00 0.00 0.00 4.75
676 678 5.356882 TTTGAAGTTATGTTCTCGCAAGG 57.643 39.130 0.00 0.00 38.47 3.61
690 692 1.810959 GCAAGGAATTGCAATTGCCA 58.189 45.000 32.26 17.51 46.60 4.92
691 693 2.152830 GCAAGGAATTGCAATTGCCAA 58.847 42.857 32.26 20.00 46.60 4.52
707 711 2.258755 GCCAACAACATAATTCGCCAC 58.741 47.619 0.00 0.00 0.00 5.01
710 714 1.470051 ACAACATAATTCGCCACCCC 58.530 50.000 0.00 0.00 0.00 4.95
712 716 0.253610 AACATAATTCGCCACCCCGA 59.746 50.000 0.00 0.00 35.09 5.14
963 994 2.288788 ATCTCCGACCCGTAAACCGC 62.289 60.000 0.00 0.00 34.38 5.68
964 995 2.990967 TCCGACCCGTAAACCGCT 60.991 61.111 0.00 0.00 34.38 5.52
1413 1462 1.334992 ACGACGATCGCTTCAACGTG 61.335 55.000 16.60 0.00 45.12 4.49
1454 1503 0.902531 TTCCCCAAGATCGACCTCAC 59.097 55.000 0.00 0.00 0.00 3.51
1673 1723 1.814394 TGCACATGAATGAACTCAGCC 59.186 47.619 0.00 0.00 0.00 4.85
1854 1905 0.975544 CTGAGTTTCACGAGTACGCG 59.024 55.000 17.76 17.76 43.96 6.01
1874 1925 4.144051 CGCGTTCATTTCAGTGTACAAAAC 59.856 41.667 0.00 0.00 0.00 2.43
2013 2064 3.439129 AGGTAAATTCTTCCTTTTCCGCG 59.561 43.478 0.00 0.00 30.76 6.46
2014 2065 3.427098 GGTAAATTCTTCCTTTTCCGCGG 60.427 47.826 22.12 22.12 0.00 6.46
2142 2193 3.728076 TCCTGCTAGTACCTTAATGCG 57.272 47.619 0.00 0.00 0.00 4.73
2230 2281 6.356556 TGGATGGTCTAACAGTTCAATATGG 58.643 40.000 0.00 0.00 0.00 2.74
2247 2298 1.971695 GGAGGGGTTGCTTGGTTCG 60.972 63.158 0.00 0.00 0.00 3.95
2371 2422 7.978414 TGATGCACTTTTTGTCACTCAATTAAA 59.022 29.630 0.00 0.00 35.84 1.52
2437 2488 6.033966 CCTCTTTAGGTGTCACAACAAAAAC 58.966 40.000 5.12 0.00 38.19 2.43
2549 2600 8.188139 TGAAGAAGTTAAAACCACATCAAGTTC 58.812 33.333 0.00 0.00 0.00 3.01
2559 2610 2.096069 CACATCAAGTTCGAGCAGTTGG 60.096 50.000 1.01 0.00 0.00 3.77
2626 2677 8.227507 ACTAAAGAACCTATTGAATGGGCATAT 58.772 33.333 7.55 0.00 33.57 1.78
2627 2678 9.739276 CTAAAGAACCTATTGAATGGGCATATA 57.261 33.333 7.55 0.00 33.57 0.86
2628 2679 8.409358 AAAGAACCTATTGAATGGGCATATAC 57.591 34.615 7.55 0.00 33.57 1.47
2631 2682 8.835734 AGAACCTATTGAATGGGCATATACATA 58.164 33.333 7.55 0.00 33.57 2.29
2634 2685 9.995594 ACCTATTGAATGGGCATATACATATTT 57.004 29.630 7.55 0.00 33.57 1.40
2947 2998 7.114866 TGACAAAGATAATGACGGGTACATA 57.885 36.000 0.00 0.00 0.00 2.29
2976 3027 5.249420 AGCTTTGATTTAGGACTTCCAGTC 58.751 41.667 0.00 0.00 44.32 3.51
3003 3054 8.055279 TGAAATTTCTCATATGACCAACTTCC 57.945 34.615 18.64 0.00 0.00 3.46
3149 3200 1.227383 GTTTGATCCGCATCCCCCT 59.773 57.895 0.00 0.00 0.00 4.79
3150 3201 1.103398 GTTTGATCCGCATCCCCCTG 61.103 60.000 0.00 0.00 0.00 4.45
3153 3204 2.851102 ATCCGCATCCCCCTGGAG 60.851 66.667 0.00 0.00 46.08 3.86
3154 3205 3.721172 ATCCGCATCCCCCTGGAGT 62.721 63.158 0.00 0.00 46.08 3.85
3155 3206 3.411517 CCGCATCCCCCTGGAGTT 61.412 66.667 0.00 0.00 46.08 3.01
3485 3710 1.850345 TGTGGGGTCTCTTTTGTCCTT 59.150 47.619 0.00 0.00 0.00 3.36
3540 3765 4.880120 GCAGACAAAGATCATGATGGAAGA 59.120 41.667 14.30 0.00 0.00 2.87
3633 3858 3.833070 ACTACTTCCATGAAGAGTTCCGT 59.167 43.478 10.62 1.54 41.71 4.69
3813 4039 5.177696 GGATTCCGAGTGCATCATTACTAAC 59.822 44.000 0.00 0.00 0.00 2.34
3926 4152 0.519077 GCACACAGCTTAGAGTTGGC 59.481 55.000 0.00 0.00 41.15 4.52
4006 4232 4.264253 TGAAATGGCATCTTACTGGTGAG 58.736 43.478 0.00 0.00 0.00 3.51
4008 4234 4.785346 AATGGCATCTTACTGGTGAGAT 57.215 40.909 0.00 2.75 36.51 2.75
4009 4235 5.894298 AATGGCATCTTACTGGTGAGATA 57.106 39.130 0.00 0.00 34.65 1.98
4010 4236 4.944619 TGGCATCTTACTGGTGAGATAG 57.055 45.455 7.52 4.86 34.65 2.08
4012 4238 3.898123 GGCATCTTACTGGTGAGATAGGA 59.102 47.826 7.52 0.00 34.65 2.94
4013 4239 4.021544 GGCATCTTACTGGTGAGATAGGAG 60.022 50.000 7.52 0.00 34.65 3.69
4014 4240 4.586841 GCATCTTACTGGTGAGATAGGAGT 59.413 45.833 7.52 0.00 34.65 3.85
4015 4241 5.278758 GCATCTTACTGGTGAGATAGGAGTC 60.279 48.000 7.52 0.00 34.65 3.36
4016 4242 4.794334 TCTTACTGGTGAGATAGGAGTCC 58.206 47.826 0.00 0.00 0.00 3.85
4017 4243 4.229812 TCTTACTGGTGAGATAGGAGTCCA 59.770 45.833 12.86 0.00 0.00 4.02
4018 4244 3.025322 ACTGGTGAGATAGGAGTCCAG 57.975 52.381 12.86 7.36 45.24 3.86
4019 4245 2.313342 ACTGGTGAGATAGGAGTCCAGT 59.687 50.000 12.86 8.57 46.91 4.00
4020 4246 2.955660 CTGGTGAGATAGGAGTCCAGTC 59.044 54.545 12.86 8.79 38.01 3.51
4021 4247 2.312390 GGTGAGATAGGAGTCCAGTCC 58.688 57.143 12.86 4.09 36.79 3.85
4022 4248 2.358300 GGTGAGATAGGAGTCCAGTCCA 60.358 54.545 12.86 6.45 39.34 4.02
4023 4249 2.691011 GTGAGATAGGAGTCCAGTCCAC 59.309 54.545 12.86 13.62 39.34 4.02
4024 4250 2.311841 TGAGATAGGAGTCCAGTCCACA 59.688 50.000 12.86 9.05 39.34 4.17
4025 4251 3.052566 TGAGATAGGAGTCCAGTCCACAT 60.053 47.826 12.86 0.00 39.34 3.21
4026 4252 3.303938 AGATAGGAGTCCAGTCCACATG 58.696 50.000 12.86 0.00 39.34 3.21
4088 4314 5.108572 GTTTTGTAAAACGCACAGAACAC 57.891 39.130 4.66 0.00 39.52 3.32
4179 4405 4.095632 TGCTGTTTCGTTCTGTGAAATGAA 59.904 37.500 0.00 0.00 37.62 2.57
4180 4406 5.215160 GCTGTTTCGTTCTGTGAAATGAAT 58.785 37.500 0.00 0.00 37.62 2.57
4181 4407 5.340667 GCTGTTTCGTTCTGTGAAATGAATC 59.659 40.000 0.00 0.00 37.62 2.52
4182 4408 6.618287 TGTTTCGTTCTGTGAAATGAATCT 57.382 33.333 0.00 0.00 37.62 2.40
4234 4479 6.323739 TCTTGCCTATGTTTCAAGGAAAAAGT 59.676 34.615 0.00 0.00 38.13 2.66
4272 4517 7.381948 TGCTGTGTCTATTAATGCAAAACAAAG 59.618 33.333 0.00 1.72 0.00 2.77
4372 4618 3.455910 TGTTTCCTGCTATGCTCTATGGT 59.544 43.478 0.00 0.00 0.00 3.55
4429 4675 0.250038 TCATTCATAGGCGCTGCTCC 60.250 55.000 7.64 0.00 0.00 4.70
4471 4756 3.660501 TGTCGACTAGCAAACATGTCT 57.339 42.857 17.92 0.00 0.00 3.41
4489 4774 3.081804 GTCTGTGGGTTGTAATGGAAGG 58.918 50.000 0.00 0.00 0.00 3.46
4518 4803 4.583871 AGATCACACCTCCAATTTGTCTC 58.416 43.478 0.00 0.00 0.00 3.36
4519 4804 3.855255 TCACACCTCCAATTTGTCTCA 57.145 42.857 0.00 0.00 0.00 3.27
4520 4805 4.371624 TCACACCTCCAATTTGTCTCAT 57.628 40.909 0.00 0.00 0.00 2.90
4521 4806 4.728772 TCACACCTCCAATTTGTCTCATT 58.271 39.130 0.00 0.00 0.00 2.57
4540 4825 4.227982 TCATTGATCATCCTCTTTCCCACA 59.772 41.667 0.00 0.00 0.00 4.17
4562 4848 4.596180 CGATGATGGCCGCGTTGC 62.596 66.667 4.92 1.11 0.00 4.17
4576 4862 1.401018 GCGTTGCCCACTCAATTGTAC 60.401 52.381 5.13 0.00 0.00 2.90
4579 4865 2.198827 TGCCCACTCAATTGTACAGG 57.801 50.000 5.13 4.36 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.299541 AGTCTTCAACTGTGCAACCG 58.700 50.000 0.00 0.00 36.65 4.44
45 46 4.716784 AGTAAGCTCCTGTGGATGTGATTA 59.283 41.667 0.00 0.00 0.00 1.75
174 175 2.096220 GGGAACCGACCTTCTTCTTC 57.904 55.000 0.00 0.00 40.86 2.87
417 418 0.249911 GGTCGCCCGAAATAGCATCT 60.250 55.000 0.00 0.00 0.00 2.90
428 429 4.473520 AGGCTTGATGGTCGCCCG 62.474 66.667 0.00 0.00 44.84 6.13
676 678 4.752661 ATGTTGTTGGCAATTGCAATTC 57.247 36.364 30.32 16.28 44.36 2.17
683 685 3.932089 GGCGAATTATGTTGTTGGCAATT 59.068 39.130 1.92 0.00 36.92 2.32
686 688 1.889170 TGGCGAATTATGTTGTTGGCA 59.111 42.857 0.00 0.00 31.71 4.92
687 689 2.258755 GTGGCGAATTATGTTGTTGGC 58.741 47.619 0.00 0.00 0.00 4.52
688 690 2.416701 GGGTGGCGAATTATGTTGTTGG 60.417 50.000 0.00 0.00 0.00 3.77
689 691 2.416701 GGGGTGGCGAATTATGTTGTTG 60.417 50.000 0.00 0.00 0.00 3.33
690 692 1.822371 GGGGTGGCGAATTATGTTGTT 59.178 47.619 0.00 0.00 0.00 2.83
691 693 1.470051 GGGGTGGCGAATTATGTTGT 58.530 50.000 0.00 0.00 0.00 3.32
707 711 2.128771 ACCATGACAAATCTTCGGGG 57.871 50.000 0.00 0.00 0.00 5.73
710 714 8.853345 CAGATTTTTAACCATGACAAATCTTCG 58.147 33.333 0.00 0.00 40.58 3.79
712 716 9.696917 GTCAGATTTTTAACCATGACAAATCTT 57.303 29.630 0.00 0.00 40.58 2.40
785 816 9.607988 TGTCCAGTACTGTAATTAATAATGTGG 57.392 33.333 21.18 1.41 0.00 4.17
792 823 9.802039 TTTTCCTTGTCCAGTACTGTAATTAAT 57.198 29.630 21.18 0.00 0.00 1.40
794 825 9.059260 GTTTTTCCTTGTCCAGTACTGTAATTA 57.941 33.333 21.18 2.47 0.00 1.40
796 827 7.228706 CAGTTTTTCCTTGTCCAGTACTGTAAT 59.771 37.037 21.18 0.00 0.00 1.89
797 828 6.540914 CAGTTTTTCCTTGTCCAGTACTGTAA 59.459 38.462 21.18 12.03 0.00 2.41
798 829 6.053005 CAGTTTTTCCTTGTCCAGTACTGTA 58.947 40.000 21.18 2.56 0.00 2.74
799 830 4.881850 CAGTTTTTCCTTGTCCAGTACTGT 59.118 41.667 21.18 0.00 0.00 3.55
800 831 4.275936 CCAGTTTTTCCTTGTCCAGTACTG 59.724 45.833 16.34 16.34 0.00 2.74
801 832 4.461198 CCAGTTTTTCCTTGTCCAGTACT 58.539 43.478 0.00 0.00 0.00 2.73
802 833 3.004419 GCCAGTTTTTCCTTGTCCAGTAC 59.996 47.826 0.00 0.00 0.00 2.73
976 1025 2.125512 CAAGAGAACGGGAGGCGG 60.126 66.667 0.00 0.00 0.00 6.13
1434 1483 0.902531 TGAGGTCGATCTTGGGGAAC 59.097 55.000 0.00 0.00 0.00 3.62
1454 1503 4.778143 CGAAGCCGTCCTTGGGGG 62.778 72.222 0.00 0.00 32.78 5.40
1854 1905 8.693504 CATGATGTTTTGTACACTGAAATGAAC 58.306 33.333 0.00 0.00 40.19 3.18
1964 2015 1.586422 TGTCTGCAGAGCAAGTTGAC 58.414 50.000 18.89 3.09 38.41 3.18
2013 2064 2.501723 TCTGCAGTAGGAAATCAGGACC 59.498 50.000 14.67 0.00 0.00 4.46
2014 2065 3.895232 TCTGCAGTAGGAAATCAGGAC 57.105 47.619 14.67 0.00 0.00 3.85
2047 2098 2.012937 TAAACCCAAGTCCGCATACG 57.987 50.000 0.00 0.00 39.67 3.06
2142 2193 9.545611 CATTGTAAAATTTTGCTGCTTTAATCC 57.454 29.630 18.09 0.00 0.00 3.01
2193 2244 4.697514 AGACCATCCAATGAACGATGTAG 58.302 43.478 0.00 0.00 35.17 2.74
2230 2281 2.626780 GCGAACCAAGCAACCCCTC 61.627 63.158 0.00 0.00 34.19 4.30
2247 2298 3.257393 CTGTTCACCTATCAGTGACTGC 58.743 50.000 7.93 0.00 46.18 4.40
2271 2322 4.750833 TGGTAGAAAATTTTGGGGAGGA 57.249 40.909 8.47 0.00 0.00 3.71
2399 2450 1.608717 AAGAGGCACGCAGTAGGGAG 61.609 60.000 0.00 0.00 41.61 4.30
2549 2600 2.673368 GGATGTTACTTCCAACTGCTCG 59.327 50.000 11.76 0.00 33.21 5.03
2559 2610 2.673368 CAACGCTCTGGGATGTTACTTC 59.327 50.000 0.00 0.00 0.00 3.01
2947 2998 6.153510 GGAAGTCCTAAATCAAAGCTCCAATT 59.846 38.462 0.00 0.00 0.00 2.32
2976 3027 9.512435 GAAGTTGGTCATATGAGAAATTTCATG 57.488 33.333 19.99 13.88 38.25 3.07
3243 3295 5.790593 TGCTAACGTACCTTGAATTCTTCT 58.209 37.500 7.05 0.00 0.00 2.85
3540 3765 4.950475 TCGATCATCTCTTCCAGTGTTAGT 59.050 41.667 0.00 0.00 0.00 2.24
3633 3858 3.609853 CAGTTACCTGCAGATGCCTTAA 58.390 45.455 17.39 0.00 41.18 1.85
3798 4024 7.598493 ACAACATTTTGGTTAGTAATGATGCAC 59.402 33.333 0.00 0.00 36.25 4.57
3813 4039 4.616802 GCGAGTATTCACACAACATTTTGG 59.383 41.667 0.00 0.00 37.00 3.28
4006 4232 2.224161 GCATGTGGACTGGACTCCTATC 60.224 54.545 0.00 0.00 0.00 2.08
4008 4234 1.195115 GCATGTGGACTGGACTCCTA 58.805 55.000 0.00 0.00 0.00 2.94
4009 4235 1.557269 GGCATGTGGACTGGACTCCT 61.557 60.000 0.00 0.00 0.00 3.69
4010 4236 1.078143 GGCATGTGGACTGGACTCC 60.078 63.158 0.00 0.00 0.00 3.85
4012 4238 1.681666 CTGGCATGTGGACTGGACT 59.318 57.895 0.00 0.00 0.00 3.85
4013 4239 1.377725 CCTGGCATGTGGACTGGAC 60.378 63.158 0.00 0.00 46.32 4.02
4014 4240 1.426251 AACCTGGCATGTGGACTGGA 61.426 55.000 0.00 0.00 46.32 3.86
4016 4242 1.003580 ACTAACCTGGCATGTGGACTG 59.996 52.381 0.00 1.78 0.00 3.51
4017 4243 1.362224 ACTAACCTGGCATGTGGACT 58.638 50.000 0.00 0.00 0.00 3.85
4018 4244 2.200373 AACTAACCTGGCATGTGGAC 57.800 50.000 0.00 0.00 0.00 4.02
4019 4245 2.969821 AAACTAACCTGGCATGTGGA 57.030 45.000 0.00 0.00 0.00 4.02
4020 4246 3.950397 TCTAAACTAACCTGGCATGTGG 58.050 45.455 0.00 0.00 0.00 4.17
4021 4247 7.624360 TTAATCTAAACTAACCTGGCATGTG 57.376 36.000 0.00 0.00 0.00 3.21
4022 4248 6.318900 GCTTAATCTAAACTAACCTGGCATGT 59.681 38.462 0.00 0.00 0.00 3.21
4023 4249 6.543831 AGCTTAATCTAAACTAACCTGGCATG 59.456 38.462 0.00 0.00 0.00 4.06
4024 4250 6.543831 CAGCTTAATCTAAACTAACCTGGCAT 59.456 38.462 0.00 0.00 0.00 4.40
4025 4251 5.880332 CAGCTTAATCTAAACTAACCTGGCA 59.120 40.000 0.00 0.00 0.00 4.92
4026 4252 6.113411 TCAGCTTAATCTAAACTAACCTGGC 58.887 40.000 0.00 0.00 0.00 4.85
4087 4313 4.437682 TTTCTCATTCTTCACCACCAGT 57.562 40.909 0.00 0.00 0.00 4.00
4088 4314 5.972107 ATTTTCTCATTCTTCACCACCAG 57.028 39.130 0.00 0.00 0.00 4.00
4297 4543 4.620086 TCCTTCACCTGTCCTAATCCTA 57.380 45.455 0.00 0.00 0.00 2.94
4298 4544 3.491766 TCCTTCACCTGTCCTAATCCT 57.508 47.619 0.00 0.00 0.00 3.24
4299 4545 3.456277 ACATCCTTCACCTGTCCTAATCC 59.544 47.826 0.00 0.00 0.00 3.01
4300 4546 4.762289 ACATCCTTCACCTGTCCTAATC 57.238 45.455 0.00 0.00 0.00 1.75
4301 4547 5.501156 GAAACATCCTTCACCTGTCCTAAT 58.499 41.667 0.00 0.00 0.00 1.73
4302 4548 4.562757 CGAAACATCCTTCACCTGTCCTAA 60.563 45.833 0.00 0.00 0.00 2.69
4372 4618 8.751242 TGTAACAGTACAGCACCTTATACATAA 58.249 33.333 0.00 0.00 35.23 1.90
4429 4675 7.495135 ACATAAAATTTCCCTTGCAAAAGTG 57.505 32.000 0.00 0.00 0.00 3.16
4471 4756 3.885976 TTCCTTCCATTACAACCCACA 57.114 42.857 0.00 0.00 0.00 4.17
4518 4803 4.529897 TGTGGGAAAGAGGATGATCAATG 58.470 43.478 0.00 0.00 0.00 2.82
4519 4804 4.868172 TGTGGGAAAGAGGATGATCAAT 57.132 40.909 0.00 0.00 0.00 2.57
4520 4805 4.868172 ATGTGGGAAAGAGGATGATCAA 57.132 40.909 0.00 0.00 0.00 2.57
4521 4806 4.529897 CAATGTGGGAAAGAGGATGATCA 58.470 43.478 0.00 0.00 0.00 2.92
4557 4843 1.876799 TGTACAATTGAGTGGGCAACG 59.123 47.619 13.59 0.00 37.60 4.10
4562 4848 1.463674 GCCCTGTACAATTGAGTGGG 58.536 55.000 13.59 17.05 36.41 4.61
4567 4853 0.693622 TTCGGGCCCTGTACAATTGA 59.306 50.000 22.43 2.67 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.