Multiple sequence alignment - TraesCS3B01G237200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G237200 chr3B 100.000 5624 0 0 1 5624 372234304 372239927 0.000000e+00 10386.0
1 TraesCS3B01G237200 chr3B 88.972 798 77 4 1 790 3136053 3135259 0.000000e+00 976.0
2 TraesCS3B01G237200 chr3B 100.000 341 0 0 5884 6224 372240187 372240527 1.140000e-176 630.0
3 TraesCS3B01G237200 chr3B 88.710 124 12 2 1441 1562 231187020 231187143 3.890000e-32 150.0
4 TraesCS3B01G237200 chr3B 87.719 57 7 0 3217 3273 482487885 482487829 4.030000e-07 67.6
5 TraesCS3B01G237200 chr3D 97.007 2372 60 6 2950 5317 278452938 278450574 0.000000e+00 3976.0
6 TraesCS3B01G237200 chr3D 95.462 573 19 5 849 1416 278453896 278453326 0.000000e+00 907.0
7 TraesCS3B01G237200 chr3D 98.104 211 3 1 1588 1798 278453164 278452955 3.550000e-97 366.0
8 TraesCS3B01G237200 chr3D 95.109 184 7 1 6043 6224 278450479 278450296 7.890000e-74 289.0
9 TraesCS3B01G237200 chr3D 97.391 115 3 0 5332 5446 278450592 278450478 4.920000e-46 196.0
10 TraesCS3B01G237200 chr3D 87.826 115 14 0 3068 3182 71506495 71506609 1.090000e-27 135.0
11 TraesCS3B01G237200 chr3D 86.400 125 13 4 5994 6117 583473364 583473243 3.910000e-27 134.0
12 TraesCS3B01G237200 chr3D 89.691 97 7 3 5996 6091 529483090 529483184 3.050000e-23 121.0
13 TraesCS3B01G237200 chr3D 85.217 115 17 0 3068 3182 462243469 462243583 1.100000e-22 119.0
14 TraesCS3B01G237200 chr3D 85.057 87 9 4 5994 6079 29225998 29225915 1.110000e-12 86.1
15 TraesCS3B01G237200 chr3D 84.706 85 11 2 6028 6112 182095619 182095537 4.000000e-12 84.2
16 TraesCS3B01G237200 chr3D 89.286 56 3 3 5925 5977 38185281 38185336 4.030000e-07 67.6
17 TraesCS3B01G237200 chr3D 97.222 36 1 0 3208 3243 409015478 409015443 1.870000e-05 62.1
18 TraesCS3B01G237200 chr3D 100.000 28 0 0 3209 3236 290869076 290869049 1.100000e-02 52.8
19 TraesCS3B01G237200 chr3A 97.007 2372 60 6 2950 5317 360822200 360824564 0.000000e+00 3976.0
20 TraesCS3B01G237200 chr3A 96.837 664 17 3 790 1450 360821210 360821872 0.000000e+00 1107.0
21 TraesCS3B01G237200 chr3A 93.667 300 11 3 5332 5623 360824546 360824845 5.730000e-120 442.0
22 TraesCS3B01G237200 chr3A 98.578 211 2 1 1588 1798 360821972 360822181 7.620000e-99 372.0
23 TraesCS3B01G237200 chr3A 90.558 233 15 5 5994 6224 360825001 360825228 1.010000e-77 302.0
24 TraesCS3B01G237200 chr3A 88.235 102 12 0 3068 3169 550144899 550145000 8.470000e-24 122.0
25 TraesCS3B01G237200 chr3A 93.878 49 3 0 5929 5977 647158973 647158925 2.410000e-09 75.0
26 TraesCS3B01G237200 chr3A 84.375 64 10 0 3240 3303 73610484 73610421 5.210000e-06 63.9
27 TraesCS3B01G237200 chr7D 96.181 1152 42 2 1798 2949 1205526 1204377 0.000000e+00 1882.0
28 TraesCS3B01G237200 chr7D 89.600 125 11 2 1445 1567 433883071 433882947 2.320000e-34 158.0
29 TraesCS3B01G237200 chr7D 88.889 117 8 5 6007 6120 34383203 34383089 8.410000e-29 139.0
30 TraesCS3B01G237200 chr7D 91.398 93 7 1 3071 3163 205494516 205494425 6.550000e-25 126.0
31 TraesCS3B01G237200 chr7D 87.500 104 12 1 6014 6117 111791633 111791735 1.100000e-22 119.0
32 TraesCS3B01G237200 chr7D 97.222 36 1 0 3208 3243 261820140 261820175 1.870000e-05 62.1
33 TraesCS3B01G237200 chr7D 100.000 30 0 0 3210 3239 378490923 378490952 8.720000e-04 56.5
34 TraesCS3B01G237200 chr7D 100.000 28 0 0 3319 3346 56543506 56543479 1.100000e-02 52.8
35 TraesCS3B01G237200 chr7B 95.462 1146 50 2 1800 2945 695112107 695110964 0.000000e+00 1827.0
36 TraesCS3B01G237200 chr7B 94.709 1153 59 2 1798 2949 99221131 99219980 0.000000e+00 1790.0
37 TraesCS3B01G237200 chr7B 95.556 45 2 0 5930 5974 75778114 75778158 8.650000e-09 73.1
38 TraesCS3B01G237200 chr7B 95.556 45 2 0 5930 5974 100880558 100880602 8.650000e-09 73.1
39 TraesCS3B01G237200 chr7B 86.441 59 6 2 3209 3266 749563793 749563736 5.210000e-06 63.9
40 TraesCS3B01G237200 chr6B 94.719 1155 59 2 1796 2949 717855873 717854720 0.000000e+00 1794.0
41 TraesCS3B01G237200 chr6B 85.393 89 11 2 3130 3218 522091644 522091558 2.390000e-14 91.6
42 TraesCS3B01G237200 chr2B 94.719 1155 59 2 1796 2949 199167239 199166086 0.000000e+00 1794.0
43 TraesCS3B01G237200 chr2B 94.705 1152 59 2 1799 2949 528830266 528831416 0.000000e+00 1788.0
44 TraesCS3B01G237200 chr2B 88.847 798 77 5 1 790 477531383 477530590 0.000000e+00 970.0
45 TraesCS3B01G237200 chr2B 89.218 742 77 2 1 742 486845329 486844591 0.000000e+00 924.0
46 TraesCS3B01G237200 chr2B 89.516 124 11 2 1447 1568 26591559 26591436 8.350000e-34 156.0
47 TraesCS3B01G237200 chr2B 90.083 121 10 2 1444 1562 723434230 723434350 8.350000e-34 156.0
48 TraesCS3B01G237200 chr5B 94.709 1153 59 2 1798 2949 362955799 362954648 0.000000e+00 1790.0
49 TraesCS3B01G237200 chr5B 94.700 1151 59 2 1800 2949 63282309 63281160 0.000000e+00 1786.0
50 TraesCS3B01G237200 chr5B 86.614 127 11 6 5991 6114 96754703 96754826 1.090000e-27 135.0
51 TraesCS3B01G237200 chr5B 82.946 129 17 5 5994 6119 702796913 702796787 1.830000e-20 111.0
52 TraesCS3B01G237200 chr5B 88.608 79 7 2 3301 3379 688804608 688804532 1.850000e-15 95.3
53 TraesCS3B01G237200 chr5B 88.608 79 7 2 3301 3379 688840307 688840231 1.850000e-15 95.3
54 TraesCS3B01G237200 chr5B 94.444 36 2 0 3208 3243 70445127 70445092 8.720000e-04 56.5
55 TraesCS3B01G237200 chr5B 84.211 57 9 0 3212 3268 440026012 440026068 8.720000e-04 56.5
56 TraesCS3B01G237200 chr5B 100.000 30 0 0 3214 3243 696291939 696291968 8.720000e-04 56.5
57 TraesCS3B01G237200 chr2A 94.705 1152 59 2 1799 2949 55884066 55882916 0.000000e+00 1788.0
58 TraesCS3B01G237200 chr2A 89.000 800 76 6 1 791 549954216 549955012 0.000000e+00 979.0
59 TraesCS3B01G237200 chr2A 90.909 121 9 2 1443 1561 62286365 62286245 1.800000e-35 161.0
60 TraesCS3B01G237200 chr2A 83.846 130 15 5 5994 6120 516306371 516306245 1.100000e-22 119.0
61 TraesCS3B01G237200 chr2A 82.692 104 14 3 3301 3403 7411396 7411496 8.590000e-14 89.8
62 TraesCS3B01G237200 chr2A 100.000 36 0 0 3301 3336 66794231 66794196 4.030000e-07 67.6
63 TraesCS3B01G237200 chr2A 79.817 109 5 10 3210 3304 27741361 27741256 5.210000e-06 63.9
64 TraesCS3B01G237200 chr5D 89.599 798 73 4 1 790 69325428 69326223 0.000000e+00 1005.0
65 TraesCS3B01G237200 chr5D 88.889 99 11 0 3071 3169 459068815 459068717 8.470000e-24 122.0
66 TraesCS3B01G237200 chr5D 83.607 61 10 0 3245 3305 345624760 345624820 2.420000e-04 58.4
67 TraesCS3B01G237200 chr5D 79.545 88 13 3 3216 3302 444729968 444729885 2.420000e-04 58.4
68 TraesCS3B01G237200 chr5D 78.302 106 10 7 3210 3303 266749459 266749355 8.720000e-04 56.5
69 TraesCS3B01G237200 chr1D 88.861 799 79 6 1 790 16204780 16205577 0.000000e+00 974.0
70 TraesCS3B01G237200 chr1D 93.617 47 3 0 6071 6117 160989762 160989716 3.110000e-08 71.3
71 TraesCS3B01G237200 chr1B 88.736 799 72 10 1 790 530956309 530955520 0.000000e+00 961.0
72 TraesCS3B01G237200 chr6D 88.346 798 80 9 1 790 143084639 143085431 0.000000e+00 946.0
73 TraesCS3B01G237200 chr6D 89.113 744 75 5 1 742 306352477 306351738 0.000000e+00 920.0
74 TraesCS3B01G237200 chr6D 87.500 104 12 1 6014 6117 438839804 438839702 1.100000e-22 119.0
75 TraesCS3B01G237200 chr6D 82.301 113 7 3 6014 6114 430832480 430832591 1.110000e-12 86.1
76 TraesCS3B01G237200 chr6D 95.349 43 2 0 5932 5974 97352513 97352555 1.120000e-07 69.4
77 TraesCS3B01G237200 chr6D 91.489 47 3 1 6068 6114 156316588 156316633 5.210000e-06 63.9
78 TraesCS3B01G237200 chr4A 91.057 123 8 3 1447 1566 702148793 702148915 4.990000e-36 163.0
79 TraesCS3B01G237200 chr4A 86.607 112 13 2 6007 6117 59383447 59383337 8.470000e-24 122.0
80 TraesCS3B01G237200 chr4A 95.556 45 2 0 5933 5977 248663 248619 8.650000e-09 73.1
81 TraesCS3B01G237200 chr4B 90.323 124 9 3 1444 1565 97922024 97922146 6.460000e-35 159.0
82 TraesCS3B01G237200 chr4B 90.756 119 9 2 1445 1561 165306627 165306509 2.320000e-34 158.0
83 TraesCS3B01G237200 chr4B 89.423 104 10 1 6014 6117 562580417 562580519 5.060000e-26 130.0
84 TraesCS3B01G237200 chr4B 85.246 122 14 4 5994 6114 50830881 50830999 8.470000e-24 122.0
85 TraesCS3B01G237200 chr4B 82.812 64 11 0 3239 3302 1049110 1049173 2.420000e-04 58.4
86 TraesCS3B01G237200 chr4D 89.600 125 11 2 1447 1569 389210116 389210240 2.320000e-34 158.0
87 TraesCS3B01G237200 chr4D 87.705 122 13 2 3098 3218 423392217 423392097 2.340000e-29 141.0
88 TraesCS3B01G237200 chr4D 87.619 105 12 1 6013 6117 437033690 437033587 3.050000e-23 121.0
89 TraesCS3B01G237200 chr4D 86.517 89 10 2 6028 6116 1360272 1360186 5.140000e-16 97.1
90 TraesCS3B01G237200 chr4D 86.585 82 11 0 3137 3218 70576979 70577060 2.390000e-14 91.6
91 TraesCS3B01G237200 chr4D 79.259 135 20 7 5991 6120 5696765 5696634 3.090000e-13 87.9
92 TraesCS3B01G237200 chr4D 92.982 57 2 2 6061 6116 396626910 396626965 1.440000e-11 82.4
93 TraesCS3B01G237200 chr4D 93.617 47 2 1 6068 6114 304643193 304643238 1.120000e-07 69.4
94 TraesCS3B01G237200 chr4D 80.000 105 8 7 3210 3302 170210360 170210463 1.450000e-06 65.8
95 TraesCS3B01G237200 chr4D 79.808 104 8 6 3212 3303 205963543 205963441 5.210000e-06 63.9
96 TraesCS3B01G237200 chr4D 80.000 85 15 2 6028 6112 14438166 14438084 1.870000e-05 62.1
97 TraesCS3B01G237200 chr4D 78.723 94 19 1 6023 6116 338024419 338024511 1.870000e-05 62.1
98 TraesCS3B01G237200 chr5A 88.000 125 11 4 5994 6117 26532044 26532165 1.810000e-30 145.0
99 TraesCS3B01G237200 chr5A 84.874 119 12 6 5991 6106 436260453 436260568 1.420000e-21 115.0
100 TraesCS3B01G237200 chr5A 88.710 62 4 3 3158 3218 237940966 237940907 8.650000e-09 73.1
101 TraesCS3B01G237200 chr5A 80.198 101 15 4 3205 3302 659866865 659866963 3.110000e-08 71.3
102 TraesCS3B01G237200 chr6A 89.796 98 10 0 3071 3168 233395624 233395527 6.550000e-25 126.0
103 TraesCS3B01G237200 chr6A 83.168 101 12 3 3121 3218 85574159 85574257 3.090000e-13 87.9
104 TraesCS3B01G237200 chr6A 93.333 45 3 0 5933 5977 523352314 523352270 4.030000e-07 67.6
105 TraesCS3B01G237200 chr6A 93.182 44 3 0 5933 5976 59814804 59814761 1.450000e-06 65.8
106 TraesCS3B01G237200 chr2D 87.129 101 12 1 6014 6114 578600786 578600885 5.100000e-21 113.0
107 TraesCS3B01G237200 chr2D 81.481 135 17 8 5991 6120 538842900 538843031 3.070000e-18 104.0
108 TraesCS3B01G237200 chr2D 76.543 162 30 7 3301 3457 8374520 8374678 1.440000e-11 82.4
109 TraesCS3B01G237200 chr2D 81.905 105 6 6 3212 3304 427953776 427953673 6.690000e-10 76.8
110 TraesCS3B01G237200 chr2D 79.208 101 17 4 3217 3315 98555035 98554937 4.030000e-07 67.6
111 TraesCS3B01G237200 chr2D 96.774 31 1 0 3239 3269 302304691 302304721 1.100000e-02 52.8
112 TraesCS3B01G237200 chr1A 84.821 112 13 4 6008 6118 496629222 496629330 6.600000e-20 110.0
113 TraesCS3B01G237200 chr1A 84.466 103 14 2 6013 6114 308573584 308573685 3.970000e-17 100.0
114 TraesCS3B01G237200 chr1A 81.553 103 15 4 6014 6114 392054408 392054508 1.440000e-11 82.4
115 TraesCS3B01G237200 chr1A 91.489 47 4 0 5933 5979 513129328 513129374 1.450000e-06 65.8
116 TraesCS3B01G237200 chr1A 100.000 31 0 0 5949 5979 531617482 531617512 2.420000e-04 58.4
117 TraesCS3B01G237200 chr1A 78.641 103 9 6 3212 3302 49276355 49276254 8.720000e-04 56.5
118 TraesCS3B01G237200 chr7A 89.855 69 6 1 3303 3371 14375201 14375134 3.090000e-13 87.9
119 TraesCS3B01G237200 chr7A 95.556 45 2 0 5933 5977 69967077 69967033 8.650000e-09 73.1
120 TraesCS3B01G237200 chr7A 95.556 45 2 0 5930 5974 676892780 676892824 8.650000e-09 73.1
121 TraesCS3B01G237200 chrUn 87.671 73 5 3 6017 6087 31222614 31222544 1.440000e-11 82.4
122 TraesCS3B01G237200 chrUn 90.566 53 2 3 6070 6120 12876733 12876682 4.030000e-07 67.6
123 TraesCS3B01G237200 chrUn 90.566 53 2 3 6070 6120 274067754 274067703 4.030000e-07 67.6
124 TraesCS3B01G237200 chrUn 91.489 47 3 1 6068 6114 197787968 197788013 5.210000e-06 63.9
125 TraesCS3B01G237200 chrUn 91.489 47 3 1 6068 6114 230513036 230513081 5.210000e-06 63.9
126 TraesCS3B01G237200 chrUn 88.679 53 5 1 6068 6120 468628800 468628749 5.210000e-06 63.9
127 TraesCS3B01G237200 chrUn 96.875 32 1 0 3206 3237 67353048 67353079 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G237200 chr3B 372234304 372240527 6223 False 5508.0 10386 100.0000 1 6224 2 chr3B.!!$F2 6223
1 TraesCS3B01G237200 chr3B 3135259 3136053 794 True 976.0 976 88.9720 1 790 1 chr3B.!!$R1 789
2 TraesCS3B01G237200 chr3D 278450296 278453896 3600 True 1146.8 3976 96.6146 849 6224 5 chr3D.!!$R6 5375
3 TraesCS3B01G237200 chr3A 360821210 360825228 4018 False 1239.8 3976 95.3294 790 6224 5 chr3A.!!$F2 5434
4 TraesCS3B01G237200 chr7D 1204377 1205526 1149 True 1882.0 1882 96.1810 1798 2949 1 chr7D.!!$R1 1151
5 TraesCS3B01G237200 chr7B 695110964 695112107 1143 True 1827.0 1827 95.4620 1800 2945 1 chr7B.!!$R2 1145
6 TraesCS3B01G237200 chr7B 99219980 99221131 1151 True 1790.0 1790 94.7090 1798 2949 1 chr7B.!!$R1 1151
7 TraesCS3B01G237200 chr6B 717854720 717855873 1153 True 1794.0 1794 94.7190 1796 2949 1 chr6B.!!$R2 1153
8 TraesCS3B01G237200 chr2B 199166086 199167239 1153 True 1794.0 1794 94.7190 1796 2949 1 chr2B.!!$R2 1153
9 TraesCS3B01G237200 chr2B 528830266 528831416 1150 False 1788.0 1788 94.7050 1799 2949 1 chr2B.!!$F1 1150
10 TraesCS3B01G237200 chr2B 477530590 477531383 793 True 970.0 970 88.8470 1 790 1 chr2B.!!$R3 789
11 TraesCS3B01G237200 chr2B 486844591 486845329 738 True 924.0 924 89.2180 1 742 1 chr2B.!!$R4 741
12 TraesCS3B01G237200 chr5B 362954648 362955799 1151 True 1790.0 1790 94.7090 1798 2949 1 chr5B.!!$R3 1151
13 TraesCS3B01G237200 chr5B 63281160 63282309 1149 True 1786.0 1786 94.7000 1800 2949 1 chr5B.!!$R1 1149
14 TraesCS3B01G237200 chr2A 55882916 55884066 1150 True 1788.0 1788 94.7050 1799 2949 1 chr2A.!!$R2 1150
15 TraesCS3B01G237200 chr2A 549954216 549955012 796 False 979.0 979 89.0000 1 791 1 chr2A.!!$F2 790
16 TraesCS3B01G237200 chr5D 69325428 69326223 795 False 1005.0 1005 89.5990 1 790 1 chr5D.!!$F1 789
17 TraesCS3B01G237200 chr1D 16204780 16205577 797 False 974.0 974 88.8610 1 790 1 chr1D.!!$F1 789
18 TraesCS3B01G237200 chr1B 530955520 530956309 789 True 961.0 961 88.7360 1 790 1 chr1B.!!$R1 789
19 TraesCS3B01G237200 chr6D 143084639 143085431 792 False 946.0 946 88.3460 1 790 1 chr6D.!!$F2 789
20 TraesCS3B01G237200 chr6D 306351738 306352477 739 True 920.0 920 89.1130 1 742 1 chr6D.!!$R1 741

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
737 738 0.040425 GCCGCACAAAAACAGACGAT 60.040 50.000 0.00 0.0 0.00 3.73 F
1461 1490 0.035152 TAAGTACTGCCTCCGTCCGA 60.035 55.000 0.00 0.0 0.00 4.55 F
1464 1493 0.037975 GTACTGCCTCCGTCCGAAAA 60.038 55.000 0.00 0.0 0.00 2.29 F
2752 2972 0.251354 GGGATGAGCTGAGCACTTGA 59.749 55.000 7.39 0.0 0.00 3.02 F
3429 3650 2.168106 ACAAAACATTCCAGCAACAGCA 59.832 40.909 0.00 0.0 0.00 4.41 F
5142 5372 1.254026 ACGAGCTGTACAAGGTAGCA 58.746 50.000 6.79 0.0 39.84 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1742 1848 0.113776 ACAGACGGTCCCTCAGGTAA 59.886 55.000 4.14 0.00 0.00 2.85 R
3107 3328 0.454600 GAGGTGACATGCTTGCATGG 59.545 55.000 30.86 17.56 36.91 3.66 R
3283 3504 1.497161 ATACTCCCTCGGTCCCAAAG 58.503 55.000 0.00 0.00 0.00 2.77 R
4428 4654 1.846439 CCCATGACATCAAGTAGGGGT 59.154 52.381 0.00 0.00 34.76 4.95 R
5166 5396 0.994995 CAATGACTGCGGAGAAGTCG 59.005 55.000 12.26 0.00 45.81 4.18 R
6153 6400 2.091278 TCCTCCCTCCGATCACTGTTAT 60.091 50.000 0.00 0.00 0.00 1.89 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 3.242252 GCAAACATTTGTGAAACCGTTGG 60.242 43.478 6.24 0.00 40.24 3.77
87 88 5.423886 ACATTTGTGAAACCGTTGGAAAAT 58.576 33.333 0.00 0.00 34.36 1.82
145 146 2.029623 AGACGGCGGCTAGAAAAGATA 58.970 47.619 16.87 0.00 0.00 1.98
161 162 7.628234 AGAAAAGATATGGAGAGAGCTTTTGA 58.372 34.615 0.00 0.00 36.17 2.69
171 172 5.373981 AGAGAGCTTTTGAGATTTTGCAG 57.626 39.130 0.00 0.00 0.00 4.41
173 174 3.893813 AGAGCTTTTGAGATTTTGCAGGT 59.106 39.130 0.00 0.00 0.00 4.00
228 229 5.804944 TTTGGGATCAAAAGATGCTTTGA 57.195 34.783 1.81 1.81 46.45 2.69
238 239 8.058667 TCAAAAGATGCTTTGATACATCATGT 57.941 30.769 0.00 0.00 44.16 3.21
289 290 3.333029 TCGAGAATGAGCATGGTCAAA 57.667 42.857 29.58 9.54 0.00 2.69
306 307 6.925211 TGGTCAAAATGTAGACTACTCTCAG 58.075 40.000 13.67 2.20 35.18 3.35
326 327 3.387374 CAGTATGAGCTCTTGGGACATCT 59.613 47.826 16.19 0.00 39.69 2.90
375 376 2.494530 GGCCCGTTTTGTTGCCTCA 61.495 57.895 0.00 0.00 40.77 3.86
383 384 4.142403 CCGTTTTGTTGCCTCATATCATGT 60.142 41.667 0.00 0.00 0.00 3.21
438 439 3.117701 AGAAGGATCTCATCGAGGAGTGA 60.118 47.826 24.89 9.15 36.30 3.41
442 443 2.736670 TCTCATCGAGGAGTGATGGA 57.263 50.000 24.89 3.70 42.73 3.41
447 448 2.143876 TCGAGGAGTGATGGACATGA 57.856 50.000 0.00 0.00 0.00 3.07
479 480 4.219944 ACAAAGAGCATCATGATTTGTGCT 59.780 37.500 18.97 18.97 41.25 4.40
552 553 9.691362 ATTTGTTTGAGCTGTAATAACGAAATT 57.309 25.926 0.00 0.00 0.00 1.82
553 554 8.500837 TTGTTTGAGCTGTAATAACGAAATTG 57.499 30.769 0.00 0.00 0.00 2.32
554 555 7.866729 TGTTTGAGCTGTAATAACGAAATTGA 58.133 30.769 0.00 0.00 0.00 2.57
555 556 8.346300 TGTTTGAGCTGTAATAACGAAATTGAA 58.654 29.630 0.00 0.00 0.00 2.69
556 557 8.627428 GTTTGAGCTGTAATAACGAAATTGAAC 58.373 33.333 0.00 0.00 0.00 3.18
557 558 7.667043 TGAGCTGTAATAACGAAATTGAACT 57.333 32.000 0.00 0.00 0.00 3.01
558 559 8.766000 TGAGCTGTAATAACGAAATTGAACTA 57.234 30.769 0.00 0.00 0.00 2.24
559 560 9.378551 TGAGCTGTAATAACGAAATTGAACTAT 57.621 29.630 0.00 0.00 0.00 2.12
600 601 9.883142 TTTTGTTTGTATTTGATCTTCTTGGTT 57.117 25.926 0.00 0.00 0.00 3.67
601 602 8.870160 TTGTTTGTATTTGATCTTCTTGGTTG 57.130 30.769 0.00 0.00 0.00 3.77
602 603 8.006298 TGTTTGTATTTGATCTTCTTGGTTGT 57.994 30.769 0.00 0.00 0.00 3.32
603 604 7.920151 TGTTTGTATTTGATCTTCTTGGTTGTG 59.080 33.333 0.00 0.00 0.00 3.33
604 605 7.581213 TTGTATTTGATCTTCTTGGTTGTGT 57.419 32.000 0.00 0.00 0.00 3.72
605 606 7.581213 TGTATTTGATCTTCTTGGTTGTGTT 57.419 32.000 0.00 0.00 0.00 3.32
606 607 8.006298 TGTATTTGATCTTCTTGGTTGTGTTT 57.994 30.769 0.00 0.00 0.00 2.83
607 608 7.920151 TGTATTTGATCTTCTTGGTTGTGTTTG 59.080 33.333 0.00 0.00 0.00 2.93
608 609 6.522625 TTTGATCTTCTTGGTTGTGTTTGA 57.477 33.333 0.00 0.00 0.00 2.69
609 610 6.522625 TTGATCTTCTTGGTTGTGTTTGAA 57.477 33.333 0.00 0.00 0.00 2.69
610 611 6.135290 TGATCTTCTTGGTTGTGTTTGAAG 57.865 37.500 0.00 0.00 34.12 3.02
611 612 5.652014 TGATCTTCTTGGTTGTGTTTGAAGT 59.348 36.000 0.00 0.00 34.37 3.01
612 613 5.309323 TCTTCTTGGTTGTGTTTGAAGTG 57.691 39.130 0.00 0.00 34.37 3.16
613 614 3.502191 TCTTGGTTGTGTTTGAAGTGC 57.498 42.857 0.00 0.00 0.00 4.40
614 615 2.822561 TCTTGGTTGTGTTTGAAGTGCA 59.177 40.909 0.00 0.00 0.00 4.57
615 616 3.446873 TCTTGGTTGTGTTTGAAGTGCAT 59.553 39.130 0.00 0.00 0.00 3.96
616 617 4.642437 TCTTGGTTGTGTTTGAAGTGCATA 59.358 37.500 0.00 0.00 0.00 3.14
617 618 5.301551 TCTTGGTTGTGTTTGAAGTGCATAT 59.698 36.000 0.00 0.00 0.00 1.78
618 619 4.869215 TGGTTGTGTTTGAAGTGCATATG 58.131 39.130 0.00 0.00 0.00 1.78
619 620 4.340666 TGGTTGTGTTTGAAGTGCATATGT 59.659 37.500 4.29 0.00 0.00 2.29
620 621 5.163468 TGGTTGTGTTTGAAGTGCATATGTT 60.163 36.000 4.29 0.00 0.00 2.71
621 622 5.175491 GGTTGTGTTTGAAGTGCATATGTTG 59.825 40.000 4.29 0.00 0.00 3.33
622 623 5.512753 TGTGTTTGAAGTGCATATGTTGT 57.487 34.783 4.29 0.00 0.00 3.32
623 624 5.900425 TGTGTTTGAAGTGCATATGTTGTT 58.100 33.333 4.29 0.00 0.00 2.83
624 625 6.336566 TGTGTTTGAAGTGCATATGTTGTTT 58.663 32.000 4.29 0.00 0.00 2.83
625 626 6.255237 TGTGTTTGAAGTGCATATGTTGTTTG 59.745 34.615 4.29 0.00 0.00 2.93
626 627 6.255453 GTGTTTGAAGTGCATATGTTGTTTGT 59.745 34.615 4.29 0.00 0.00 2.83
627 628 6.255237 TGTTTGAAGTGCATATGTTGTTTGTG 59.745 34.615 4.29 0.00 0.00 3.33
628 629 4.297510 TGAAGTGCATATGTTGTTTGTGC 58.702 39.130 4.29 0.00 36.39 4.57
629 630 2.932498 AGTGCATATGTTGTTTGTGCG 58.068 42.857 4.29 0.00 38.58 5.34
630 631 2.551887 AGTGCATATGTTGTTTGTGCGA 59.448 40.909 4.29 0.00 38.58 5.10
631 632 2.910482 GTGCATATGTTGTTTGTGCGAG 59.090 45.455 4.29 0.00 38.58 5.03
632 633 2.810852 TGCATATGTTGTTTGTGCGAGA 59.189 40.909 4.29 0.00 38.58 4.04
633 634 3.120234 TGCATATGTTGTTTGTGCGAGAG 60.120 43.478 4.29 0.00 38.58 3.20
653 654 0.153797 CGCGCGCGTAATATTTTTGC 59.846 50.000 42.49 8.63 34.35 3.68
654 655 1.184349 GCGCGCGTAATATTTTTGCA 58.816 45.000 32.35 0.00 0.00 4.08
655 656 1.184908 GCGCGCGTAATATTTTTGCAG 59.815 47.619 32.35 0.00 0.00 4.41
656 657 1.184908 CGCGCGTAATATTTTTGCAGC 59.815 47.619 24.19 3.78 0.00 5.25
657 658 2.450160 GCGCGTAATATTTTTGCAGCT 58.550 42.857 8.43 0.00 0.00 4.24
658 659 2.464016 GCGCGTAATATTTTTGCAGCTC 59.536 45.455 8.43 0.00 0.00 4.09
659 660 3.035942 CGCGTAATATTTTTGCAGCTCC 58.964 45.455 0.00 0.00 0.00 4.70
660 661 3.242739 CGCGTAATATTTTTGCAGCTCCT 60.243 43.478 0.00 0.00 0.00 3.69
661 662 4.037690 GCGTAATATTTTTGCAGCTCCTG 58.962 43.478 0.00 0.00 34.12 3.86
673 674 3.360886 GCTCCTGCTGAAGCTACTC 57.639 57.895 3.61 0.00 42.66 2.59
674 675 0.534412 GCTCCTGCTGAAGCTACTCA 59.466 55.000 3.61 0.00 42.66 3.41
675 676 1.138661 GCTCCTGCTGAAGCTACTCAT 59.861 52.381 3.61 0.00 42.66 2.90
676 677 2.823984 CTCCTGCTGAAGCTACTCATG 58.176 52.381 3.61 0.00 42.66 3.07
677 678 1.134580 TCCTGCTGAAGCTACTCATGC 60.135 52.381 3.61 0.00 42.66 4.06
678 679 0.928922 CTGCTGAAGCTACTCATGCG 59.071 55.000 3.61 0.00 42.66 4.73
679 680 1.086067 TGCTGAAGCTACTCATGCGC 61.086 55.000 0.00 0.00 42.66 6.09
680 681 1.922903 CTGAAGCTACTCATGCGCG 59.077 57.895 0.00 0.00 35.28 6.86
681 682 2.087095 CTGAAGCTACTCATGCGCGC 62.087 60.000 27.26 27.26 35.28 6.86
682 683 1.880340 GAAGCTACTCATGCGCGCT 60.880 57.895 33.29 14.40 35.28 5.92
683 684 0.595053 GAAGCTACTCATGCGCGCTA 60.595 55.000 33.29 19.04 35.28 4.26
684 685 0.179111 AAGCTACTCATGCGCGCTAA 60.179 50.000 33.29 14.09 35.28 3.09
685 686 0.179111 AGCTACTCATGCGCGCTAAA 60.179 50.000 33.29 13.19 35.28 1.85
686 687 0.230769 GCTACTCATGCGCGCTAAAG 59.769 55.000 33.29 25.67 0.00 1.85
687 688 1.560923 CTACTCATGCGCGCTAAAGT 58.439 50.000 33.29 29.36 0.00 2.66
688 689 1.927174 CTACTCATGCGCGCTAAAGTT 59.073 47.619 33.29 14.29 0.00 2.66
689 690 1.156736 ACTCATGCGCGCTAAAGTTT 58.843 45.000 33.29 7.53 0.00 2.66
690 691 2.343101 ACTCATGCGCGCTAAAGTTTA 58.657 42.857 33.29 9.65 0.00 2.01
691 692 2.093783 ACTCATGCGCGCTAAAGTTTAC 59.906 45.455 33.29 0.00 0.00 2.01
692 693 2.070028 TCATGCGCGCTAAAGTTTACA 58.930 42.857 33.29 7.91 0.00 2.41
693 694 2.480802 TCATGCGCGCTAAAGTTTACAA 59.519 40.909 33.29 7.30 0.00 2.41
694 695 2.303707 TGCGCGCTAAAGTTTACAAC 57.696 45.000 33.29 0.00 0.00 3.32
695 696 1.235695 GCGCGCTAAAGTTTACAACG 58.764 50.000 26.67 0.00 36.23 4.10
696 697 1.860709 CGCGCTAAAGTTTACAACGG 58.139 50.000 5.56 0.00 36.23 4.44
697 698 1.456544 CGCGCTAAAGTTTACAACGGA 59.543 47.619 5.56 0.00 36.23 4.69
698 699 2.719688 CGCGCTAAAGTTTACAACGGAC 60.720 50.000 5.56 0.00 36.23 4.79
699 700 2.719688 GCGCTAAAGTTTACAACGGACG 60.720 50.000 0.00 0.00 36.23 4.79
700 701 2.719688 CGCTAAAGTTTACAACGGACGC 60.720 50.000 0.00 0.00 36.23 5.19
701 702 2.477754 GCTAAAGTTTACAACGGACGCT 59.522 45.455 0.00 0.00 36.23 5.07
702 703 3.663493 GCTAAAGTTTACAACGGACGCTG 60.663 47.826 0.00 0.00 36.23 5.18
703 704 2.228138 AAGTTTACAACGGACGCTGA 57.772 45.000 1.81 0.00 36.23 4.26
704 705 2.228138 AGTTTACAACGGACGCTGAA 57.772 45.000 1.81 0.00 36.23 3.02
705 706 2.132762 AGTTTACAACGGACGCTGAAG 58.867 47.619 1.81 0.00 36.23 3.02
706 707 0.863144 TTTACAACGGACGCTGAAGC 59.137 50.000 1.81 0.00 37.78 3.86
707 708 0.947180 TTACAACGGACGCTGAAGCC 60.947 55.000 1.81 0.00 37.91 4.35
708 709 2.089887 TACAACGGACGCTGAAGCCA 62.090 55.000 1.81 0.00 37.91 4.75
709 710 2.034879 CAACGGACGCTGAAGCCAT 61.035 57.895 0.00 0.00 37.91 4.40
710 711 1.302511 AACGGACGCTGAAGCCATT 60.303 52.632 0.00 0.00 37.91 3.16
711 712 0.889186 AACGGACGCTGAAGCCATTT 60.889 50.000 0.00 0.00 37.91 2.32
712 713 1.298859 ACGGACGCTGAAGCCATTTC 61.299 55.000 0.00 0.00 37.91 2.17
713 714 1.021390 CGGACGCTGAAGCCATTTCT 61.021 55.000 0.00 0.00 36.71 2.52
714 715 0.729690 GGACGCTGAAGCCATTTCTC 59.270 55.000 0.00 0.00 36.71 2.87
715 716 0.729690 GACGCTGAAGCCATTTCTCC 59.270 55.000 0.00 0.00 36.71 3.71
716 717 1.021390 ACGCTGAAGCCATTTCTCCG 61.021 55.000 0.00 0.00 36.71 4.63
717 718 1.021390 CGCTGAAGCCATTTCTCCGT 61.021 55.000 0.00 0.00 36.71 4.69
718 719 0.449388 GCTGAAGCCATTTCTCCGTG 59.551 55.000 0.00 0.00 36.71 4.94
719 720 0.449388 CTGAAGCCATTTCTCCGTGC 59.551 55.000 0.00 0.00 36.71 5.34
720 721 0.960364 TGAAGCCATTTCTCCGTGCC 60.960 55.000 0.00 0.00 36.71 5.01
721 722 1.982073 GAAGCCATTTCTCCGTGCCG 61.982 60.000 0.00 0.00 32.83 5.69
722 723 4.179579 GCCATTTCTCCGTGCCGC 62.180 66.667 0.00 0.00 0.00 6.53
723 724 2.745884 CCATTTCTCCGTGCCGCA 60.746 61.111 0.00 0.00 0.00 5.69
724 725 2.480555 CATTTCTCCGTGCCGCAC 59.519 61.111 13.81 13.81 0.00 5.34
725 726 2.031919 ATTTCTCCGTGCCGCACA 59.968 55.556 22.89 3.86 33.40 4.57
726 727 1.599518 ATTTCTCCGTGCCGCACAA 60.600 52.632 22.89 9.73 33.40 3.33
727 728 1.169661 ATTTCTCCGTGCCGCACAAA 61.170 50.000 22.89 15.20 33.40 2.83
728 729 1.377366 TTTCTCCGTGCCGCACAAAA 61.377 50.000 22.89 13.52 33.40 2.44
729 730 1.377366 TTCTCCGTGCCGCACAAAAA 61.377 50.000 22.89 8.60 33.40 1.94
730 731 1.657181 CTCCGTGCCGCACAAAAAC 60.657 57.895 22.89 0.00 33.40 2.43
731 732 2.103143 CCGTGCCGCACAAAAACA 59.897 55.556 22.89 0.00 33.40 2.83
732 733 1.943693 CCGTGCCGCACAAAAACAG 60.944 57.895 22.89 4.95 33.40 3.16
733 734 1.063327 CGTGCCGCACAAAAACAGA 59.937 52.632 22.89 0.00 33.40 3.41
734 735 1.199852 CGTGCCGCACAAAAACAGAC 61.200 55.000 22.89 0.00 33.40 3.51
735 736 1.063327 TGCCGCACAAAAACAGACG 59.937 52.632 0.00 0.00 0.00 4.18
736 737 1.353804 GCCGCACAAAAACAGACGA 59.646 52.632 0.00 0.00 0.00 4.20
737 738 0.040425 GCCGCACAAAAACAGACGAT 60.040 50.000 0.00 0.00 0.00 3.73
738 739 1.950472 CCGCACAAAAACAGACGATC 58.050 50.000 0.00 0.00 0.00 3.69
739 740 1.531149 CCGCACAAAAACAGACGATCT 59.469 47.619 0.00 0.00 0.00 2.75
748 749 2.449548 CAGACGATCTGCAAACGCT 58.550 52.632 6.73 3.49 37.72 5.07
749 750 0.792640 CAGACGATCTGCAAACGCTT 59.207 50.000 6.73 0.00 37.72 4.68
750 751 1.195448 CAGACGATCTGCAAACGCTTT 59.805 47.619 6.73 0.00 37.72 3.51
751 752 1.873591 AGACGATCTGCAAACGCTTTT 59.126 42.857 6.73 0.00 0.00 2.27
752 753 2.290641 AGACGATCTGCAAACGCTTTTT 59.709 40.909 6.73 0.00 0.00 1.94
753 754 3.496884 AGACGATCTGCAAACGCTTTTTA 59.503 39.130 6.73 0.00 0.00 1.52
754 755 3.810373 ACGATCTGCAAACGCTTTTTAG 58.190 40.909 6.73 0.00 0.00 1.85
755 756 2.589841 CGATCTGCAAACGCTTTTTAGC 59.410 45.455 0.00 0.00 0.00 3.09
763 764 4.868195 GCTTTTTAGCGTGCCTGG 57.132 55.556 0.00 0.00 0.00 4.45
764 765 1.444383 GCTTTTTAGCGTGCCTGGC 60.444 57.895 12.87 12.87 0.00 4.85
765 766 1.154225 CTTTTTAGCGTGCCTGGCG 60.154 57.895 14.98 1.19 35.00 5.69
766 767 1.852067 CTTTTTAGCGTGCCTGGCGT 61.852 55.000 14.98 0.90 35.00 5.68
767 768 1.448922 TTTTTAGCGTGCCTGGCGTT 61.449 50.000 14.98 0.91 35.00 4.84
768 769 0.603172 TTTTAGCGTGCCTGGCGTTA 60.603 50.000 14.98 0.00 35.00 3.18
769 770 1.017177 TTTAGCGTGCCTGGCGTTAG 61.017 55.000 14.98 6.18 35.00 2.34
770 771 1.879737 TTAGCGTGCCTGGCGTTAGA 61.880 55.000 14.98 0.00 35.00 2.10
771 772 2.552585 TAGCGTGCCTGGCGTTAGAC 62.553 60.000 14.98 5.06 35.00 2.59
772 773 3.179265 CGTGCCTGGCGTTAGACG 61.179 66.667 14.98 13.87 45.88 4.18
773 774 2.813908 GTGCCTGGCGTTAGACGG 60.814 66.667 14.98 0.00 42.82 4.79
786 787 2.583593 GACGGCTGTCGGAGATGC 60.584 66.667 10.53 0.00 44.45 3.91
787 788 3.069980 GACGGCTGTCGGAGATGCT 62.070 63.158 10.53 0.00 44.45 3.79
788 789 2.279120 CGGCTGTCGGAGATGCTC 60.279 66.667 0.00 0.00 40.67 4.26
807 808 0.904649 CTGTCAGTGGATAGTGGCCA 59.095 55.000 0.00 0.00 30.66 5.36
823 824 2.753701 CATGGACCCACCCGTCAA 59.246 61.111 0.00 0.00 38.00 3.18
825 826 0.748005 CATGGACCCACCCGTCAATC 60.748 60.000 0.00 0.00 38.00 2.67
865 866 7.327214 TCAAAGTTAAAGTGGTGCAAAAGATT 58.673 30.769 0.00 0.00 0.00 2.40
958 959 1.963338 AGCAGCTGCAACTTCGTCC 60.963 57.895 38.24 7.01 45.16 4.79
986 987 2.103263 AGCTCGAATCTTATCCCGCTTT 59.897 45.455 0.00 0.00 0.00 3.51
1162 1163 2.739913 GGAAACGCAGCTGTGTATGTAA 59.260 45.455 31.72 0.00 37.87 2.41
1167 1168 4.500127 ACGCAGCTGTGTATGTAATGTAA 58.500 39.130 30.70 0.00 36.94 2.41
1308 1309 2.424667 CCCCATGGCATCAAACCTCATA 60.425 50.000 6.09 0.00 0.00 2.15
1398 1404 3.861689 GGAGATACGGTTTTACTTCGGTG 59.138 47.826 0.00 0.00 0.00 4.94
1411 1424 2.367567 ACTTCGGTGCCTTGTCTTCTTA 59.632 45.455 0.00 0.00 0.00 2.10
1452 1481 9.783256 AAATTTTTCATCGTATTAAGTACTGCC 57.217 29.630 0.00 0.00 0.00 4.85
1454 1483 7.766219 TTTTCATCGTATTAAGTACTGCCTC 57.234 36.000 0.00 0.00 0.00 4.70
1455 1484 5.449107 TCATCGTATTAAGTACTGCCTCC 57.551 43.478 0.00 0.00 0.00 4.30
1456 1485 3.976793 TCGTATTAAGTACTGCCTCCG 57.023 47.619 0.00 0.00 0.00 4.63
1457 1486 3.282021 TCGTATTAAGTACTGCCTCCGT 58.718 45.455 0.00 0.00 0.00 4.69
1458 1487 3.313526 TCGTATTAAGTACTGCCTCCGTC 59.686 47.826 0.00 0.00 0.00 4.79
1459 1488 3.549625 CGTATTAAGTACTGCCTCCGTCC 60.550 52.174 0.00 0.00 0.00 4.79
1460 1489 0.813184 TTAAGTACTGCCTCCGTCCG 59.187 55.000 0.00 0.00 0.00 4.79
1461 1490 0.035152 TAAGTACTGCCTCCGTCCGA 60.035 55.000 0.00 0.00 0.00 4.55
1462 1491 0.896940 AAGTACTGCCTCCGTCCGAA 60.897 55.000 0.00 0.00 0.00 4.30
1463 1492 0.896940 AGTACTGCCTCCGTCCGAAA 60.897 55.000 0.00 0.00 0.00 3.46
1464 1493 0.037975 GTACTGCCTCCGTCCGAAAA 60.038 55.000 0.00 0.00 0.00 2.29
1465 1494 0.899720 TACTGCCTCCGTCCGAAAAT 59.100 50.000 0.00 0.00 0.00 1.82
1466 1495 0.899720 ACTGCCTCCGTCCGAAAATA 59.100 50.000 0.00 0.00 0.00 1.40
1467 1496 1.287425 CTGCCTCCGTCCGAAAATAC 58.713 55.000 0.00 0.00 0.00 1.89
1468 1497 0.899720 TGCCTCCGTCCGAAAATACT 59.100 50.000 0.00 0.00 0.00 2.12
1469 1498 1.276989 TGCCTCCGTCCGAAAATACTT 59.723 47.619 0.00 0.00 0.00 2.24
1470 1499 2.496871 TGCCTCCGTCCGAAAATACTTA 59.503 45.455 0.00 0.00 0.00 2.24
1471 1500 3.133362 TGCCTCCGTCCGAAAATACTTAT 59.867 43.478 0.00 0.00 0.00 1.73
1472 1501 4.124970 GCCTCCGTCCGAAAATACTTATT 58.875 43.478 0.00 0.00 0.00 1.40
1473 1502 4.025145 GCCTCCGTCCGAAAATACTTATTG 60.025 45.833 0.00 0.00 0.00 1.90
1474 1503 4.510340 CCTCCGTCCGAAAATACTTATTGG 59.490 45.833 0.00 0.00 0.00 3.16
1475 1504 5.341872 TCCGTCCGAAAATACTTATTGGA 57.658 39.130 0.00 0.00 0.00 3.53
1476 1505 5.353938 TCCGTCCGAAAATACTTATTGGAG 58.646 41.667 0.00 0.00 0.00 3.86
1477 1506 4.510340 CCGTCCGAAAATACTTATTGGAGG 59.490 45.833 0.00 0.00 0.00 4.30
1478 1507 5.353938 CGTCCGAAAATACTTATTGGAGGA 58.646 41.667 0.00 0.66 33.06 3.71
1479 1508 5.813672 CGTCCGAAAATACTTATTGGAGGAA 59.186 40.000 0.00 0.00 33.06 3.36
1480 1509 6.482308 CGTCCGAAAATACTTATTGGAGGAAT 59.518 38.462 0.00 0.00 33.06 3.01
1481 1510 7.518370 CGTCCGAAAATACTTATTGGAGGAATG 60.518 40.741 0.00 0.00 33.06 2.67
1482 1511 7.497909 GTCCGAAAATACTTATTGGAGGAATGA 59.502 37.037 0.00 0.00 0.00 2.57
1483 1512 8.050325 TCCGAAAATACTTATTGGAGGAATGAA 58.950 33.333 0.00 0.00 0.00 2.57
1484 1513 8.850156 CCGAAAATACTTATTGGAGGAATGAAT 58.150 33.333 0.00 0.00 0.00 2.57
1485 1514 9.669353 CGAAAATACTTATTGGAGGAATGAATG 57.331 33.333 0.00 0.00 0.00 2.67
1495 1524 6.332735 TGGAGGAATGAATGTATCTAGACG 57.667 41.667 0.00 0.00 0.00 4.18
1496 1525 5.833667 TGGAGGAATGAATGTATCTAGACGT 59.166 40.000 0.00 0.00 0.00 4.34
1497 1526 7.002276 TGGAGGAATGAATGTATCTAGACGTA 58.998 38.462 0.00 0.00 0.00 3.57
1498 1527 7.670140 TGGAGGAATGAATGTATCTAGACGTAT 59.330 37.037 0.00 0.00 0.00 3.06
1499 1528 8.524487 GGAGGAATGAATGTATCTAGACGTATT 58.476 37.037 0.00 0.00 0.00 1.89
1500 1529 9.915629 GAGGAATGAATGTATCTAGACGTATTT 57.084 33.333 0.00 0.00 0.00 1.40
1534 1563 9.525826 AGATACATCCATTTTATCCATTTCTCC 57.474 33.333 0.00 0.00 0.00 3.71
1535 1564 6.983906 ACATCCATTTTATCCATTTCTCCC 57.016 37.500 0.00 0.00 0.00 4.30
1536 1565 6.442961 ACATCCATTTTATCCATTTCTCCCA 58.557 36.000 0.00 0.00 0.00 4.37
1537 1566 6.324770 ACATCCATTTTATCCATTTCTCCCAC 59.675 38.462 0.00 0.00 0.00 4.61
1538 1567 5.836705 TCCATTTTATCCATTTCTCCCACA 58.163 37.500 0.00 0.00 0.00 4.17
1539 1568 6.259893 TCCATTTTATCCATTTCTCCCACAA 58.740 36.000 0.00 0.00 0.00 3.33
1540 1569 6.380846 TCCATTTTATCCATTTCTCCCACAAG 59.619 38.462 0.00 0.00 0.00 3.16
1541 1570 5.659440 TTTTATCCATTTCTCCCACAAGC 57.341 39.130 0.00 0.00 0.00 4.01
1542 1571 2.905415 ATCCATTTCTCCCACAAGCA 57.095 45.000 0.00 0.00 0.00 3.91
1543 1572 2.905415 TCCATTTCTCCCACAAGCAT 57.095 45.000 0.00 0.00 0.00 3.79
1544 1573 3.173953 TCCATTTCTCCCACAAGCATT 57.826 42.857 0.00 0.00 0.00 3.56
1545 1574 3.509442 TCCATTTCTCCCACAAGCATTT 58.491 40.909 0.00 0.00 0.00 2.32
1546 1575 3.511146 TCCATTTCTCCCACAAGCATTTC 59.489 43.478 0.00 0.00 0.00 2.17
1547 1576 3.512724 CCATTTCTCCCACAAGCATTTCT 59.487 43.478 0.00 0.00 0.00 2.52
1548 1577 4.491676 CATTTCTCCCACAAGCATTTCTG 58.508 43.478 0.00 0.00 0.00 3.02
1549 1578 2.205022 TCTCCCACAAGCATTTCTGG 57.795 50.000 0.00 0.00 0.00 3.86
1550 1579 1.704628 TCTCCCACAAGCATTTCTGGA 59.295 47.619 0.00 0.00 0.00 3.86
1551 1580 1.815003 CTCCCACAAGCATTTCTGGAC 59.185 52.381 0.00 0.00 0.00 4.02
1552 1581 0.523072 CCCACAAGCATTTCTGGACG 59.477 55.000 0.00 0.00 0.00 4.79
1553 1582 0.523072 CCACAAGCATTTCTGGACGG 59.477 55.000 0.00 0.00 0.00 4.79
1554 1583 0.523072 CACAAGCATTTCTGGACGGG 59.477 55.000 0.00 0.00 0.00 5.28
1555 1584 0.609131 ACAAGCATTTCTGGACGGGG 60.609 55.000 0.00 0.00 0.00 5.73
1556 1585 1.000896 AAGCATTTCTGGACGGGGG 60.001 57.895 0.00 0.00 0.00 5.40
1557 1586 1.497309 AAGCATTTCTGGACGGGGGA 61.497 55.000 0.00 0.00 0.00 4.81
1558 1587 1.452108 GCATTTCTGGACGGGGGAG 60.452 63.158 0.00 0.00 0.00 4.30
1561 1590 1.139058 CATTTCTGGACGGGGGAGTAG 59.861 57.143 0.00 0.00 0.00 2.57
1578 1607 6.380560 GGGGAGTAGTTAGTAGTTTGACTGAT 59.619 42.308 0.00 0.00 0.00 2.90
1579 1608 7.559170 GGGGAGTAGTTAGTAGTTTGACTGATA 59.441 40.741 0.00 0.00 0.00 2.15
1695 1801 5.336213 GCTCCACATCAACTCAATTGTGATT 60.336 40.000 14.16 2.71 41.50 2.57
1742 1848 3.055530 TGTGTGCCATTTCCAAAACAACT 60.056 39.130 0.00 0.00 0.00 3.16
2003 2110 4.039730 CCTATGTCGAAAGAGATGGTGGAT 59.960 45.833 0.00 0.00 44.62 3.41
2034 2141 2.816777 TTATGCTGCCACCCATGTTA 57.183 45.000 0.00 0.00 0.00 2.41
2096 2203 1.362355 GCCTTGAACAACGGTTGGG 59.638 57.895 23.51 15.42 37.36 4.12
2171 2278 5.453567 AATAACCTGCAAAGGAGAAACAC 57.546 39.130 0.00 0.00 0.00 3.32
2286 2393 3.713826 AATACCGTCCAACCAATGACT 57.286 42.857 0.00 0.00 0.00 3.41
2414 2522 8.394971 TGTCTCATCATGAGTACAAAAACAAT 57.605 30.769 14.56 0.00 44.58 2.71
2559 2667 9.613428 TTTGTTATTATTCATCTGTACCTCAGG 57.387 33.333 0.00 0.00 43.76 3.86
2716 2926 1.037030 TGCCAATCAAATCCCGCCTC 61.037 55.000 0.00 0.00 0.00 4.70
2752 2972 0.251354 GGGATGAGCTGAGCACTTGA 59.749 55.000 7.39 0.00 0.00 3.02
2796 3016 4.387559 CGCGTGCAATATTGTATAAGGCTA 59.612 41.667 16.61 0.00 0.00 3.93
3030 3250 7.178628 TGACTACCTTGTTCTGCTCTACTTTAT 59.821 37.037 0.00 0.00 0.00 1.40
3107 3328 5.743422 GCCCCCACTAATCTATTTCTCTCAC 60.743 48.000 0.00 0.00 0.00 3.51
3292 3513 4.394729 TCAATGACACTTACTTTGGGACC 58.605 43.478 0.00 0.00 0.00 4.46
3389 3610 9.956558 ATATTATTGCCCCAAATATCCATGTAT 57.043 29.630 0.00 0.00 0.00 2.29
3429 3650 2.168106 ACAAAACATTCCAGCAACAGCA 59.832 40.909 0.00 0.00 0.00 4.41
3448 3671 5.363101 CAGCATGTGGTGTATCATAGTTCT 58.637 41.667 4.13 0.00 38.61 3.01
3714 3937 2.676342 CCAGAAAGCGCGGTATAAGTTT 59.324 45.455 12.91 0.00 0.00 2.66
3771 3995 6.589135 TCATGAAGTCTCAGCATATGACATT 58.411 36.000 6.97 0.00 34.23 2.71
3920 4145 4.451629 AATTCCAGAGCATTTGCAGAAG 57.548 40.909 5.20 0.00 45.16 2.85
4134 4359 3.375299 GGTCCATGTCATTGCTTGTACTC 59.625 47.826 0.00 0.00 0.00 2.59
4183 4408 3.119602 TGTCTGGATGTGTAACTAGCGAC 60.120 47.826 0.00 0.00 38.04 5.19
4338 4563 4.789012 TGCTTGGTCATTGAGAAAATCC 57.211 40.909 0.00 0.00 0.00 3.01
4428 4654 2.325484 TCCTTGTACAAGAGAGTGGCA 58.675 47.619 32.50 7.14 40.79 4.92
4494 4722 8.302438 CAGAAAGAGGCACTTGAATAAGAAAAT 58.698 33.333 0.00 0.00 41.55 1.82
4502 4730 7.598493 GGCACTTGAATAAGAAAATTAGTTGCA 59.402 33.333 0.00 0.00 37.36 4.08
4642 4870 7.924541 AGGTAAAGTGGAACCTCATTTATGTA 58.075 34.615 0.00 0.00 42.60 2.29
4767 4995 4.165372 TGAGTGAAAAAGTGGGGTTAGACT 59.835 41.667 0.00 0.00 0.00 3.24
4809 5037 8.262933 AGGTAGCTTTACGGAAACAAGTATAAT 58.737 33.333 0.00 0.00 0.00 1.28
4810 5038 9.533253 GGTAGCTTTACGGAAACAAGTATAATA 57.467 33.333 0.00 0.00 0.00 0.98
4813 5041 9.310716 AGCTTTACGGAAACAAGTATAATACTC 57.689 33.333 0.00 0.00 38.26 2.59
5037 5267 4.499865 GCACCTCGTCTTAATCTGATGCTA 60.500 45.833 0.00 0.00 0.00 3.49
5049 5279 3.262420 TCTGATGCTAAGAAGAAACGCC 58.738 45.455 0.00 0.00 0.00 5.68
5142 5372 1.254026 ACGAGCTGTACAAGGTAGCA 58.746 50.000 6.79 0.00 39.84 3.49
5178 5408 2.649034 GACCACGACTTCTCCGCA 59.351 61.111 0.00 0.00 0.00 5.69
5282 5512 5.455392 CATTCAAATGTATTCGCCCATCTC 58.545 41.667 0.00 0.00 0.00 2.75
5294 5524 1.945819 GCCCATCTCGTCTCTTTTGCA 60.946 52.381 0.00 0.00 0.00 4.08
5317 5549 7.328982 TGCAGACATATAAATGTGCTTGTTTTG 59.671 33.333 9.30 0.00 46.49 2.44
5318 5550 7.669098 CAGACATATAAATGTGCTTGTTTTGC 58.331 34.615 0.00 0.00 46.49 3.68
5319 5551 6.527722 AGACATATAAATGTGCTTGTTTTGCG 59.472 34.615 0.00 0.00 46.49 4.85
5320 5552 5.062058 ACATATAAATGTGCTTGTTTTGCGC 59.938 36.000 0.00 0.00 44.79 6.09
5322 5554 4.898002 TGTGCTTGTTTTGCGCAA 57.102 44.444 21.02 21.02 46.07 4.85
5323 5555 3.128259 TGTGCTTGTTTTGCGCAAA 57.872 42.105 30.63 30.63 46.07 3.68
5324 5556 1.649664 TGTGCTTGTTTTGCGCAAAT 58.350 40.000 33.94 0.00 46.07 2.32
5325 5557 2.814269 TGTGCTTGTTTTGCGCAAATA 58.186 38.095 33.94 23.24 46.07 1.40
5326 5558 3.388308 TGTGCTTGTTTTGCGCAAATAT 58.612 36.364 33.94 0.00 46.07 1.28
5327 5559 4.550422 TGTGCTTGTTTTGCGCAAATATA 58.450 34.783 33.94 18.44 46.07 0.86
5328 5560 5.167121 TGTGCTTGTTTTGCGCAAATATAT 58.833 33.333 33.94 0.00 46.07 0.86
5329 5561 6.325596 TGTGCTTGTTTTGCGCAAATATATA 58.674 32.000 33.94 17.68 46.07 0.86
5330 5562 6.977502 TGTGCTTGTTTTGCGCAAATATATAT 59.022 30.769 33.94 0.00 46.07 0.86
5331 5563 8.131731 TGTGCTTGTTTTGCGCAAATATATATA 58.868 29.630 33.94 16.18 46.07 0.86
5332 5564 9.128107 GTGCTTGTTTTGCGCAAATATATATAT 57.872 29.630 33.94 0.00 40.28 0.86
5369 5601 2.969628 ACAGGCAGAGTGTATACAGC 57.030 50.000 5.62 6.04 0.00 4.40
5516 5748 2.837591 AGCAAATTTATGGTCCCAACCC 59.162 45.455 0.00 0.00 45.83 4.11
5580 5820 3.006003 ACGGTGTGTATGTGTGTATGTGA 59.994 43.478 0.00 0.00 0.00 3.58
5590 5830 8.470805 TGTATGTGTGTATGTGATGTGTATGTA 58.529 33.333 0.00 0.00 0.00 2.29
5623 5863 8.469200 TCTTTGAAGCTTTGGTTCCATTATATG 58.531 33.333 0.00 0.00 39.02 1.78
5921 6161 3.609103 ATGTGTTTGTTCACTCGCTTC 57.391 42.857 0.00 0.00 38.90 3.86
5940 6180 4.561105 CTTCAGTCTTTGTGTACTCCCTC 58.439 47.826 0.00 0.00 0.00 4.30
5945 6185 2.036733 TCTTTGTGTACTCCCTCCGTTG 59.963 50.000 0.00 0.00 0.00 4.10
5946 6186 0.034337 TTGTGTACTCCCTCCGTTGC 59.966 55.000 0.00 0.00 0.00 4.17
6006 6251 8.575649 TTTTTGTGGGTCTTTAGATATTCTCC 57.424 34.615 0.00 0.00 0.00 3.71
6007 6252 6.884472 TTGTGGGTCTTTAGATATTCTCCA 57.116 37.500 0.00 0.00 0.00 3.86
6008 6253 6.884472 TGTGGGTCTTTAGATATTCTCCAA 57.116 37.500 0.00 0.00 0.00 3.53
6009 6254 7.451731 TGTGGGTCTTTAGATATTCTCCAAT 57.548 36.000 0.00 0.00 0.00 3.16
6010 6255 8.561536 TGTGGGTCTTTAGATATTCTCCAATA 57.438 34.615 0.00 0.00 0.00 1.90
6011 6256 9.170890 TGTGGGTCTTTAGATATTCTCCAATAT 57.829 33.333 0.00 0.00 37.82 1.28
6012 6257 9.442047 GTGGGTCTTTAGATATTCTCCAATATG 57.558 37.037 0.00 0.00 35.63 1.78
6013 6258 9.392506 TGGGTCTTTAGATATTCTCCAATATGA 57.607 33.333 0.00 0.00 35.63 2.15
6014 6259 9.660180 GGGTCTTTAGATATTCTCCAATATGAC 57.340 37.037 0.00 0.00 35.63 3.06
6069 6314 6.006449 AGTGTAGGTTCATTCATTTTGCTCT 58.994 36.000 0.00 0.00 0.00 4.09
6175 6422 0.396417 ACAGTGATCGGAGGGAGGAG 60.396 60.000 0.00 0.00 0.00 3.69
6214 6461 3.034721 TGGTAGGCACAAAGAACGTAG 57.965 47.619 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 6.553476 AGATAGTAGCCATGGTTGTATGTACA 59.447 38.462 14.67 0.00 0.00 2.90
22 23 6.939622 TGTCATCCATAAGATAGTAGCCATG 58.060 40.000 0.00 0.00 32.37 3.66
82 83 7.827701 AGATTTTTCTTACCTTCCGGATTTTC 58.172 34.615 4.15 0.00 0.00 2.29
87 88 5.871834 TCAAGATTTTTCTTACCTTCCGGA 58.128 37.500 0.00 0.00 0.00 5.14
145 146 5.105837 GCAAAATCTCAAAAGCTCTCTCCAT 60.106 40.000 0.00 0.00 0.00 3.41
161 162 3.325716 AGCAAATTGGACCTGCAAAATCT 59.674 39.130 6.25 0.00 38.58 2.40
171 172 6.205658 GTCCTCTCATAATAGCAAATTGGACC 59.794 42.308 0.00 0.00 34.68 4.46
173 174 6.299141 GGTCCTCTCATAATAGCAAATTGGA 58.701 40.000 0.00 0.00 0.00 3.53
228 229 4.754322 TCACACAAGCGTACATGATGTAT 58.246 39.130 8.72 0.00 35.05 2.29
238 239 1.731709 GTGCATGATCACACAAGCGTA 59.268 47.619 10.69 0.00 36.77 4.42
281 282 7.179338 ACTGAGAGTAGTCTACATTTTGACCAT 59.821 37.037 12.54 0.00 34.02 3.55
306 307 3.551863 CGAGATGTCCCAAGAGCTCATAC 60.552 52.174 17.77 6.73 0.00 2.39
375 376 3.059884 GGCACGTCGAATGACATGATAT 58.940 45.455 0.00 0.00 40.66 1.63
438 439 5.539574 TCTTTGTTGGTCATTTCATGTCCAT 59.460 36.000 3.92 0.00 45.44 3.41
442 443 4.341806 TGCTCTTTGTTGGTCATTTCATGT 59.658 37.500 0.00 0.00 0.00 3.21
447 448 5.244402 TCATGATGCTCTTTGTTGGTCATTT 59.756 36.000 0.00 0.00 0.00 2.32
455 456 4.927425 GCACAAATCATGATGCTCTTTGTT 59.073 37.500 17.58 1.30 37.80 2.83
526 527 9.691362 AATTTCGTTATTACAGCTCAAACAAAT 57.309 25.926 0.00 0.00 0.00 2.32
527 528 8.963130 CAATTTCGTTATTACAGCTCAAACAAA 58.037 29.630 0.00 0.00 0.00 2.83
528 529 8.346300 TCAATTTCGTTATTACAGCTCAAACAA 58.654 29.630 0.00 0.00 0.00 2.83
529 530 7.866729 TCAATTTCGTTATTACAGCTCAAACA 58.133 30.769 0.00 0.00 0.00 2.83
530 531 8.627428 GTTCAATTTCGTTATTACAGCTCAAAC 58.373 33.333 0.00 0.00 0.00 2.93
531 532 8.564574 AGTTCAATTTCGTTATTACAGCTCAAA 58.435 29.630 0.00 0.00 0.00 2.69
532 533 8.094798 AGTTCAATTTCGTTATTACAGCTCAA 57.905 30.769 0.00 0.00 0.00 3.02
533 534 7.667043 AGTTCAATTTCGTTATTACAGCTCA 57.333 32.000 0.00 0.00 0.00 4.26
574 575 9.883142 AACCAAGAAGATCAAATACAAACAAAA 57.117 25.926 0.00 0.00 0.00 2.44
575 576 9.311916 CAACCAAGAAGATCAAATACAAACAAA 57.688 29.630 0.00 0.00 0.00 2.83
576 577 8.474025 ACAACCAAGAAGATCAAATACAAACAA 58.526 29.630 0.00 0.00 0.00 2.83
577 578 7.920151 CACAACCAAGAAGATCAAATACAAACA 59.080 33.333 0.00 0.00 0.00 2.83
578 579 7.920682 ACACAACCAAGAAGATCAAATACAAAC 59.079 33.333 0.00 0.00 0.00 2.93
579 580 8.006298 ACACAACCAAGAAGATCAAATACAAA 57.994 30.769 0.00 0.00 0.00 2.83
580 581 7.581213 ACACAACCAAGAAGATCAAATACAA 57.419 32.000 0.00 0.00 0.00 2.41
581 582 7.581213 AACACAACCAAGAAGATCAAATACA 57.419 32.000 0.00 0.00 0.00 2.29
582 583 8.134895 TCAAACACAACCAAGAAGATCAAATAC 58.865 33.333 0.00 0.00 0.00 1.89
583 584 8.231692 TCAAACACAACCAAGAAGATCAAATA 57.768 30.769 0.00 0.00 0.00 1.40
584 585 7.111247 TCAAACACAACCAAGAAGATCAAAT 57.889 32.000 0.00 0.00 0.00 2.32
585 586 6.522625 TCAAACACAACCAAGAAGATCAAA 57.477 33.333 0.00 0.00 0.00 2.69
586 587 6.152661 ACTTCAAACACAACCAAGAAGATCAA 59.847 34.615 0.00 0.00 36.78 2.57
587 588 5.652014 ACTTCAAACACAACCAAGAAGATCA 59.348 36.000 0.00 0.00 36.78 2.92
588 589 5.973565 CACTTCAAACACAACCAAGAAGATC 59.026 40.000 0.00 0.00 36.78 2.75
589 590 5.679638 GCACTTCAAACACAACCAAGAAGAT 60.680 40.000 0.00 0.00 36.78 2.40
590 591 4.380444 GCACTTCAAACACAACCAAGAAGA 60.380 41.667 0.00 0.00 36.78 2.87
591 592 3.859386 GCACTTCAAACACAACCAAGAAG 59.141 43.478 0.00 0.00 38.64 2.85
592 593 3.256879 TGCACTTCAAACACAACCAAGAA 59.743 39.130 0.00 0.00 0.00 2.52
593 594 2.822561 TGCACTTCAAACACAACCAAGA 59.177 40.909 0.00 0.00 0.00 3.02
594 595 3.229276 TGCACTTCAAACACAACCAAG 57.771 42.857 0.00 0.00 0.00 3.61
595 596 3.883830 ATGCACTTCAAACACAACCAA 57.116 38.095 0.00 0.00 0.00 3.67
596 597 4.340666 ACATATGCACTTCAAACACAACCA 59.659 37.500 1.58 0.00 0.00 3.67
597 598 4.870363 ACATATGCACTTCAAACACAACC 58.130 39.130 1.58 0.00 0.00 3.77
598 599 5.748152 ACAACATATGCACTTCAAACACAAC 59.252 36.000 1.58 0.00 0.00 3.32
599 600 5.900425 ACAACATATGCACTTCAAACACAA 58.100 33.333 1.58 0.00 0.00 3.33
600 601 5.512753 ACAACATATGCACTTCAAACACA 57.487 34.783 1.58 0.00 0.00 3.72
601 602 6.255453 ACAAACAACATATGCACTTCAAACAC 59.745 34.615 1.58 0.00 0.00 3.32
602 603 6.255237 CACAAACAACATATGCACTTCAAACA 59.745 34.615 1.58 0.00 0.00 2.83
603 604 6.639212 CACAAACAACATATGCACTTCAAAC 58.361 36.000 1.58 0.00 0.00 2.93
604 605 5.233902 GCACAAACAACATATGCACTTCAAA 59.766 36.000 1.58 0.00 36.30 2.69
605 606 4.744137 GCACAAACAACATATGCACTTCAA 59.256 37.500 1.58 0.00 36.30 2.69
606 607 4.297510 GCACAAACAACATATGCACTTCA 58.702 39.130 1.58 0.00 36.30 3.02
607 608 3.361644 CGCACAAACAACATATGCACTTC 59.638 43.478 1.58 0.00 36.02 3.01
608 609 3.004210 TCGCACAAACAACATATGCACTT 59.996 39.130 1.58 0.00 36.02 3.16
609 610 2.551887 TCGCACAAACAACATATGCACT 59.448 40.909 1.58 0.00 36.02 4.40
610 611 2.910482 CTCGCACAAACAACATATGCAC 59.090 45.455 1.58 0.00 36.02 4.57
611 612 2.810852 TCTCGCACAAACAACATATGCA 59.189 40.909 1.58 0.00 36.02 3.96
612 613 3.419915 CTCTCGCACAAACAACATATGC 58.580 45.455 1.58 0.00 0.00 3.14
613 614 3.419915 GCTCTCGCACAAACAACATATG 58.580 45.455 0.00 0.00 35.78 1.78
614 615 2.094258 CGCTCTCGCACAAACAACATAT 59.906 45.455 0.00 0.00 35.30 1.78
615 616 1.459209 CGCTCTCGCACAAACAACATA 59.541 47.619 0.00 0.00 35.30 2.29
616 617 0.235665 CGCTCTCGCACAAACAACAT 59.764 50.000 0.00 0.00 35.30 2.71
617 618 1.641140 CGCTCTCGCACAAACAACA 59.359 52.632 0.00 0.00 35.30 3.33
618 619 4.496898 CGCTCTCGCACAAACAAC 57.503 55.556 0.00 0.00 35.30 3.32
635 636 1.184349 TGCAAAAATATTACGCGCGC 58.816 45.000 32.58 23.91 0.00 6.86
636 637 1.184908 GCTGCAAAAATATTACGCGCG 59.815 47.619 30.96 30.96 0.00 6.86
637 638 2.450160 AGCTGCAAAAATATTACGCGC 58.550 42.857 5.73 0.00 0.00 6.86
638 639 3.035942 GGAGCTGCAAAAATATTACGCG 58.964 45.455 3.53 3.53 0.00 6.01
639 640 4.037690 CAGGAGCTGCAAAAATATTACGC 58.962 43.478 8.35 0.00 0.00 4.42
655 656 0.534412 TGAGTAGCTTCAGCAGGAGC 59.466 55.000 0.00 0.00 45.16 4.70
656 657 2.823984 CATGAGTAGCTTCAGCAGGAG 58.176 52.381 0.75 0.00 45.16 3.69
657 658 1.134580 GCATGAGTAGCTTCAGCAGGA 60.135 52.381 0.00 0.00 45.16 3.86
658 659 1.297664 GCATGAGTAGCTTCAGCAGG 58.702 55.000 0.00 0.00 45.16 4.85
659 660 0.928922 CGCATGAGTAGCTTCAGCAG 59.071 55.000 0.00 0.00 45.16 4.24
660 661 1.086067 GCGCATGAGTAGCTTCAGCA 61.086 55.000 0.30 0.00 45.16 4.41
661 662 1.640604 GCGCATGAGTAGCTTCAGC 59.359 57.895 0.30 0.00 42.49 4.26
662 663 1.922903 CGCGCATGAGTAGCTTCAG 59.077 57.895 8.75 0.00 0.00 3.02
663 664 2.167219 GCGCGCATGAGTAGCTTCA 61.167 57.895 29.10 0.00 0.00 3.02
664 665 0.595053 TAGCGCGCATGAGTAGCTTC 60.595 55.000 35.10 0.00 39.14 3.86
665 666 0.179111 TTAGCGCGCATGAGTAGCTT 60.179 50.000 35.10 10.92 39.14 3.74
666 667 0.179111 TTTAGCGCGCATGAGTAGCT 60.179 50.000 35.10 20.37 41.45 3.32
667 668 0.230769 CTTTAGCGCGCATGAGTAGC 59.769 55.000 35.10 3.73 0.00 3.58
668 669 1.560923 ACTTTAGCGCGCATGAGTAG 58.439 50.000 35.10 21.42 0.00 2.57
669 670 2.004583 AACTTTAGCGCGCATGAGTA 57.995 45.000 35.10 13.92 0.00 2.59
670 671 1.156736 AAACTTTAGCGCGCATGAGT 58.843 45.000 35.10 27.44 0.00 3.41
671 672 2.093625 TGTAAACTTTAGCGCGCATGAG 59.906 45.455 35.10 26.77 0.00 2.90
672 673 2.070028 TGTAAACTTTAGCGCGCATGA 58.930 42.857 35.10 15.60 0.00 3.07
673 674 2.519002 TGTAAACTTTAGCGCGCATG 57.481 45.000 35.10 20.98 0.00 4.06
674 675 2.723618 CGTTGTAAACTTTAGCGCGCAT 60.724 45.455 35.10 20.44 46.99 4.73
675 676 1.397441 CGTTGTAAACTTTAGCGCGCA 60.397 47.619 35.10 16.82 46.99 6.09
676 677 1.235695 CGTTGTAAACTTTAGCGCGC 58.764 50.000 26.66 26.66 46.99 6.86
677 678 1.456544 TCCGTTGTAAACTTTAGCGCG 59.543 47.619 0.00 0.00 46.99 6.86
678 679 2.719688 CGTCCGTTGTAAACTTTAGCGC 60.720 50.000 0.00 0.00 46.99 5.92
679 680 2.719688 GCGTCCGTTGTAAACTTTAGCG 60.720 50.000 0.00 0.00 46.99 4.26
680 681 2.477754 AGCGTCCGTTGTAAACTTTAGC 59.522 45.455 0.00 0.00 46.99 3.09
681 682 3.737266 TCAGCGTCCGTTGTAAACTTTAG 59.263 43.478 3.53 0.00 46.99 1.85
682 683 3.715495 TCAGCGTCCGTTGTAAACTTTA 58.285 40.909 3.53 0.00 46.99 1.85
683 684 2.553086 TCAGCGTCCGTTGTAAACTTT 58.447 42.857 3.53 0.00 46.99 2.66
684 685 2.228138 TCAGCGTCCGTTGTAAACTT 57.772 45.000 3.53 0.00 46.99 2.66
685 686 2.132762 CTTCAGCGTCCGTTGTAAACT 58.867 47.619 3.53 0.00 46.99 2.66
686 687 1.398071 GCTTCAGCGTCCGTTGTAAAC 60.398 52.381 3.53 0.00 45.31 2.01
687 688 0.863144 GCTTCAGCGTCCGTTGTAAA 59.137 50.000 3.53 0.00 0.00 2.01
688 689 0.947180 GGCTTCAGCGTCCGTTGTAA 60.947 55.000 3.53 0.00 43.26 2.41
689 690 1.373748 GGCTTCAGCGTCCGTTGTA 60.374 57.895 3.53 0.00 43.26 2.41
690 691 2.665185 GGCTTCAGCGTCCGTTGT 60.665 61.111 3.53 0.00 43.26 3.32
691 692 1.577328 AATGGCTTCAGCGTCCGTTG 61.577 55.000 0.00 0.00 43.26 4.10
692 693 0.889186 AAATGGCTTCAGCGTCCGTT 60.889 50.000 0.00 0.00 43.26 4.44
693 694 1.298859 GAAATGGCTTCAGCGTCCGT 61.299 55.000 0.00 0.00 43.26 4.69
694 695 1.021390 AGAAATGGCTTCAGCGTCCG 61.021 55.000 0.00 0.00 43.26 4.79
695 696 0.729690 GAGAAATGGCTTCAGCGTCC 59.270 55.000 0.00 0.00 43.26 4.79
696 697 0.729690 GGAGAAATGGCTTCAGCGTC 59.270 55.000 0.00 0.00 43.26 5.19
697 698 1.021390 CGGAGAAATGGCTTCAGCGT 61.021 55.000 0.00 0.00 43.26 5.07
698 699 1.021390 ACGGAGAAATGGCTTCAGCG 61.021 55.000 0.00 0.00 43.26 5.18
699 700 0.449388 CACGGAGAAATGGCTTCAGC 59.551 55.000 0.00 0.00 36.40 4.26
700 701 0.449388 GCACGGAGAAATGGCTTCAG 59.551 55.000 0.00 0.00 36.40 3.02
701 702 0.960364 GGCACGGAGAAATGGCTTCA 60.960 55.000 0.00 0.00 38.32 3.02
702 703 1.803289 GGCACGGAGAAATGGCTTC 59.197 57.895 0.00 0.00 38.32 3.86
703 704 4.002797 GGCACGGAGAAATGGCTT 57.997 55.556 0.00 0.00 38.32 4.35
716 717 1.199852 CGTCTGTTTTTGTGCGGCAC 61.200 55.000 25.55 25.55 34.56 5.01
717 718 1.063327 CGTCTGTTTTTGTGCGGCA 59.937 52.632 0.00 0.00 0.00 5.69
718 719 0.040425 ATCGTCTGTTTTTGTGCGGC 60.040 50.000 0.00 0.00 0.00 6.53
719 720 1.531149 AGATCGTCTGTTTTTGTGCGG 59.469 47.619 0.00 0.00 0.00 5.69
720 721 2.563976 CAGATCGTCTGTTTTTGTGCG 58.436 47.619 6.79 0.00 39.58 5.34
721 722 2.286950 TGCAGATCGTCTGTTTTTGTGC 60.287 45.455 13.91 0.00 45.94 4.57
722 723 3.607422 TGCAGATCGTCTGTTTTTGTG 57.393 42.857 13.91 0.00 45.94 3.33
723 724 4.351192 GTTTGCAGATCGTCTGTTTTTGT 58.649 39.130 13.91 0.00 45.94 2.83
724 725 3.418619 CGTTTGCAGATCGTCTGTTTTTG 59.581 43.478 13.91 2.50 45.94 2.44
725 726 3.617669 CGTTTGCAGATCGTCTGTTTTT 58.382 40.909 13.91 0.00 45.94 1.94
726 727 2.602217 GCGTTTGCAGATCGTCTGTTTT 60.602 45.455 13.91 0.00 45.94 2.43
727 728 1.069906 GCGTTTGCAGATCGTCTGTTT 60.070 47.619 13.91 0.00 45.94 2.83
728 729 0.512952 GCGTTTGCAGATCGTCTGTT 59.487 50.000 13.91 0.00 45.94 3.16
729 730 0.319900 AGCGTTTGCAGATCGTCTGT 60.320 50.000 13.91 0.00 45.94 3.41
730 731 0.792640 AAGCGTTTGCAGATCGTCTG 59.207 50.000 9.73 9.73 46.90 3.51
731 732 1.512926 AAAGCGTTTGCAGATCGTCT 58.487 45.000 8.51 4.61 46.23 4.18
732 733 2.316119 AAAAGCGTTTGCAGATCGTC 57.684 45.000 0.00 2.88 46.23 4.20
733 734 2.774439 AAAAAGCGTTTGCAGATCGT 57.226 40.000 0.00 0.00 46.23 3.73
734 735 2.589841 GCTAAAAAGCGTTTGCAGATCG 59.410 45.455 0.00 0.00 46.23 3.69
746 747 1.444383 GCCAGGCACGCTAAAAAGC 60.444 57.895 6.55 0.00 0.00 3.51
747 748 1.154225 CGCCAGGCACGCTAAAAAG 60.154 57.895 13.30 0.00 0.00 2.27
748 749 1.448922 AACGCCAGGCACGCTAAAAA 61.449 50.000 13.30 0.00 0.00 1.94
749 750 0.603172 TAACGCCAGGCACGCTAAAA 60.603 50.000 13.30 0.00 0.00 1.52
750 751 1.004799 TAACGCCAGGCACGCTAAA 60.005 52.632 13.30 0.00 0.00 1.85
751 752 1.447140 CTAACGCCAGGCACGCTAA 60.447 57.895 13.30 0.00 0.00 3.09
752 753 2.183300 CTAACGCCAGGCACGCTA 59.817 61.111 13.30 0.00 0.00 4.26
753 754 3.691342 TCTAACGCCAGGCACGCT 61.691 61.111 13.30 0.00 0.00 5.07
754 755 3.488090 GTCTAACGCCAGGCACGC 61.488 66.667 13.30 0.00 0.00 5.34
755 756 3.179265 CGTCTAACGCCAGGCACG 61.179 66.667 13.30 9.68 33.65 5.34
756 757 2.813908 CCGTCTAACGCCAGGCAC 60.814 66.667 13.30 0.00 40.91 5.01
757 758 4.752879 GCCGTCTAACGCCAGGCA 62.753 66.667 13.30 0.00 46.48 4.75
759 760 2.509336 CAGCCGTCTAACGCCAGG 60.509 66.667 0.00 0.00 40.91 4.45
760 761 1.805945 GACAGCCGTCTAACGCCAG 60.806 63.158 0.00 0.00 40.91 4.85
761 762 2.260434 GACAGCCGTCTAACGCCA 59.740 61.111 0.00 0.00 40.91 5.69
762 763 2.879462 CGACAGCCGTCTAACGCC 60.879 66.667 0.00 0.00 40.91 5.68
763 764 2.879462 CCGACAGCCGTCTAACGC 60.879 66.667 0.00 0.00 40.91 4.84
764 765 1.226323 CTCCGACAGCCGTCTAACG 60.226 63.158 0.00 0.00 40.23 3.18
765 766 0.739561 ATCTCCGACAGCCGTCTAAC 59.260 55.000 0.00 0.00 40.23 2.34
766 767 0.738975 CATCTCCGACAGCCGTCTAA 59.261 55.000 0.00 0.00 40.23 2.10
767 768 1.725557 GCATCTCCGACAGCCGTCTA 61.726 60.000 0.00 0.00 40.23 2.59
768 769 3.069980 GCATCTCCGACAGCCGTCT 62.070 63.158 0.00 0.00 40.23 4.18
769 770 2.583593 GCATCTCCGACAGCCGTC 60.584 66.667 0.00 0.00 38.91 4.79
770 771 3.069980 GAGCATCTCCGACAGCCGT 62.070 63.158 0.00 0.00 36.31 5.68
771 772 2.279120 GAGCATCTCCGACAGCCG 60.279 66.667 0.00 0.00 38.18 5.52
782 783 3.492309 CCACTATCCACTGACAGAGCATC 60.492 52.174 10.08 0.00 0.00 3.91
783 784 2.433604 CCACTATCCACTGACAGAGCAT 59.566 50.000 10.08 0.00 0.00 3.79
784 785 1.827344 CCACTATCCACTGACAGAGCA 59.173 52.381 10.08 0.00 0.00 4.26
785 786 1.472376 GCCACTATCCACTGACAGAGC 60.472 57.143 10.08 0.00 0.00 4.09
786 787 1.137872 GGCCACTATCCACTGACAGAG 59.862 57.143 10.08 0.23 0.00 3.35
787 788 1.195115 GGCCACTATCCACTGACAGA 58.805 55.000 10.08 0.00 0.00 3.41
788 789 0.904649 TGGCCACTATCCACTGACAG 59.095 55.000 0.00 0.00 0.00 3.51
807 808 0.914417 AGATTGACGGGTGGGTCCAT 60.914 55.000 0.00 0.00 36.07 3.41
823 824 3.593442 TTGATAATTTGCCCCCGAGAT 57.407 42.857 0.00 0.00 0.00 2.75
825 826 3.023832 ACTTTGATAATTTGCCCCCGAG 58.976 45.455 0.00 0.00 0.00 4.63
832 833 7.170658 TGCACCACTTTAACTTTGATAATTTGC 59.829 33.333 0.00 0.00 0.00 3.68
958 959 2.665056 TAAGATTCGAGCTACGCGAG 57.335 50.000 15.93 7.21 42.26 5.03
1398 1404 6.765915 AAATCCAAGATAAGAAGACAAGGC 57.234 37.500 0.00 0.00 0.00 4.35
1429 1458 7.279313 GGAGGCAGTACTTAATACGATGAAAAA 59.721 37.037 0.00 0.00 38.97 1.94
1439 1468 2.620115 CGGACGGAGGCAGTACTTAATA 59.380 50.000 0.00 0.00 0.00 0.98
1440 1469 1.407979 CGGACGGAGGCAGTACTTAAT 59.592 52.381 0.00 0.00 0.00 1.40
1441 1470 0.813184 CGGACGGAGGCAGTACTTAA 59.187 55.000 0.00 0.00 0.00 1.85
1443 1472 0.896940 TTCGGACGGAGGCAGTACTT 60.897 55.000 0.00 0.00 0.00 2.24
1445 1474 0.037975 TTTTCGGACGGAGGCAGTAC 60.038 55.000 0.00 0.00 0.00 2.73
1448 1477 1.134788 AGTATTTTCGGACGGAGGCAG 60.135 52.381 0.00 0.00 0.00 4.85
1449 1478 0.899720 AGTATTTTCGGACGGAGGCA 59.100 50.000 0.00 0.00 0.00 4.75
1450 1479 2.019948 AAGTATTTTCGGACGGAGGC 57.980 50.000 0.00 0.00 0.00 4.70
1451 1480 4.510340 CCAATAAGTATTTTCGGACGGAGG 59.490 45.833 0.00 0.00 0.00 4.30
1452 1481 5.353938 TCCAATAAGTATTTTCGGACGGAG 58.646 41.667 0.00 0.00 0.00 4.63
1454 1483 4.510340 CCTCCAATAAGTATTTTCGGACGG 59.490 45.833 0.00 0.00 0.00 4.79
1455 1484 5.353938 TCCTCCAATAAGTATTTTCGGACG 58.646 41.667 0.00 0.00 0.00 4.79
1456 1485 7.497909 TCATTCCTCCAATAAGTATTTTCGGAC 59.502 37.037 0.00 0.00 0.00 4.79
1457 1486 7.570132 TCATTCCTCCAATAAGTATTTTCGGA 58.430 34.615 0.00 0.00 0.00 4.55
1458 1487 7.801716 TCATTCCTCCAATAAGTATTTTCGG 57.198 36.000 0.00 0.00 0.00 4.30
1459 1488 9.669353 CATTCATTCCTCCAATAAGTATTTTCG 57.331 33.333 0.00 0.00 0.00 3.46
1469 1498 8.523658 CGTCTAGATACATTCATTCCTCCAATA 58.476 37.037 0.00 0.00 0.00 1.90
1470 1499 7.015682 ACGTCTAGATACATTCATTCCTCCAAT 59.984 37.037 0.00 0.00 0.00 3.16
1471 1500 6.323996 ACGTCTAGATACATTCATTCCTCCAA 59.676 38.462 0.00 0.00 0.00 3.53
1472 1501 5.833667 ACGTCTAGATACATTCATTCCTCCA 59.166 40.000 0.00 0.00 0.00 3.86
1473 1502 6.334102 ACGTCTAGATACATTCATTCCTCC 57.666 41.667 0.00 0.00 0.00 4.30
1474 1503 9.915629 AAATACGTCTAGATACATTCATTCCTC 57.084 33.333 0.00 0.00 0.00 3.71
1508 1537 9.525826 GGAGAAATGGATAAAATGGATGTATCT 57.474 33.333 0.00 0.00 0.00 1.98
1509 1538 8.743714 GGGAGAAATGGATAAAATGGATGTATC 58.256 37.037 0.00 0.00 0.00 2.24
1510 1539 8.233820 TGGGAGAAATGGATAAAATGGATGTAT 58.766 33.333 0.00 0.00 0.00 2.29
1511 1540 7.505585 GTGGGAGAAATGGATAAAATGGATGTA 59.494 37.037 0.00 0.00 0.00 2.29
1512 1541 6.324770 GTGGGAGAAATGGATAAAATGGATGT 59.675 38.462 0.00 0.00 0.00 3.06
1513 1542 6.324512 TGTGGGAGAAATGGATAAAATGGATG 59.675 38.462 0.00 0.00 0.00 3.51
1514 1543 6.442961 TGTGGGAGAAATGGATAAAATGGAT 58.557 36.000 0.00 0.00 0.00 3.41
1515 1544 5.836705 TGTGGGAGAAATGGATAAAATGGA 58.163 37.500 0.00 0.00 0.00 3.41
1516 1545 6.543430 TTGTGGGAGAAATGGATAAAATGG 57.457 37.500 0.00 0.00 0.00 3.16
1517 1546 6.044682 GCTTGTGGGAGAAATGGATAAAATG 58.955 40.000 0.00 0.00 0.00 2.32
1518 1547 5.721000 TGCTTGTGGGAGAAATGGATAAAAT 59.279 36.000 0.00 0.00 0.00 1.82
1519 1548 5.083122 TGCTTGTGGGAGAAATGGATAAAA 58.917 37.500 0.00 0.00 0.00 1.52
1520 1549 4.671831 TGCTTGTGGGAGAAATGGATAAA 58.328 39.130 0.00 0.00 0.00 1.40
1521 1550 4.314522 TGCTTGTGGGAGAAATGGATAA 57.685 40.909 0.00 0.00 0.00 1.75
1522 1551 4.524802 ATGCTTGTGGGAGAAATGGATA 57.475 40.909 0.00 0.00 0.00 2.59
1523 1552 2.905415 TGCTTGTGGGAGAAATGGAT 57.095 45.000 0.00 0.00 0.00 3.41
1524 1553 2.905415 ATGCTTGTGGGAGAAATGGA 57.095 45.000 0.00 0.00 0.00 3.41
1525 1554 3.512724 AGAAATGCTTGTGGGAGAAATGG 59.487 43.478 0.00 0.00 0.00 3.16
1526 1555 4.491676 CAGAAATGCTTGTGGGAGAAATG 58.508 43.478 0.00 0.00 0.00 2.32
1527 1556 3.512724 CCAGAAATGCTTGTGGGAGAAAT 59.487 43.478 0.00 0.00 41.34 2.17
1528 1557 2.892852 CCAGAAATGCTTGTGGGAGAAA 59.107 45.455 0.00 0.00 41.34 2.52
1529 1558 2.108075 TCCAGAAATGCTTGTGGGAGAA 59.892 45.455 2.52 0.00 44.42 2.87
1530 1559 1.704628 TCCAGAAATGCTTGTGGGAGA 59.295 47.619 2.52 0.00 44.42 3.71
1531 1560 1.815003 GTCCAGAAATGCTTGTGGGAG 59.185 52.381 2.52 0.00 44.42 4.30
1532 1561 1.881925 CGTCCAGAAATGCTTGTGGGA 60.882 52.381 2.52 0.00 44.42 4.37
1533 1562 0.523072 CGTCCAGAAATGCTTGTGGG 59.477 55.000 2.52 0.00 44.42 4.61
1534 1563 0.523072 CCGTCCAGAAATGCTTGTGG 59.477 55.000 0.00 0.00 45.43 4.17
1535 1564 0.523072 CCCGTCCAGAAATGCTTGTG 59.477 55.000 0.00 0.00 0.00 3.33
1536 1565 0.609131 CCCCGTCCAGAAATGCTTGT 60.609 55.000 0.00 0.00 0.00 3.16
1537 1566 1.315257 CCCCCGTCCAGAAATGCTTG 61.315 60.000 0.00 0.00 0.00 4.01
1538 1567 1.000896 CCCCCGTCCAGAAATGCTT 60.001 57.895 0.00 0.00 0.00 3.91
1539 1568 1.915078 CTCCCCCGTCCAGAAATGCT 61.915 60.000 0.00 0.00 0.00 3.79
1540 1569 1.452108 CTCCCCCGTCCAGAAATGC 60.452 63.158 0.00 0.00 0.00 3.56
1541 1570 1.139058 CTACTCCCCCGTCCAGAAATG 59.861 57.143 0.00 0.00 0.00 2.32
1542 1571 1.273666 ACTACTCCCCCGTCCAGAAAT 60.274 52.381 0.00 0.00 0.00 2.17
1543 1572 0.115745 ACTACTCCCCCGTCCAGAAA 59.884 55.000 0.00 0.00 0.00 2.52
1544 1573 0.115745 AACTACTCCCCCGTCCAGAA 59.884 55.000 0.00 0.00 0.00 3.02
1545 1574 1.002069 TAACTACTCCCCCGTCCAGA 58.998 55.000 0.00 0.00 0.00 3.86
1546 1575 1.341778 ACTAACTACTCCCCCGTCCAG 60.342 57.143 0.00 0.00 0.00 3.86
1547 1576 0.706433 ACTAACTACTCCCCCGTCCA 59.294 55.000 0.00 0.00 0.00 4.02
1548 1577 2.092158 ACTACTAACTACTCCCCCGTCC 60.092 54.545 0.00 0.00 0.00 4.79
1549 1578 3.289407 ACTACTAACTACTCCCCCGTC 57.711 52.381 0.00 0.00 0.00 4.79
1550 1579 3.746792 AACTACTAACTACTCCCCCGT 57.253 47.619 0.00 0.00 0.00 5.28
1551 1580 4.019174 TCAAACTACTAACTACTCCCCCG 58.981 47.826 0.00 0.00 0.00 5.73
1552 1581 5.022122 AGTCAAACTACTAACTACTCCCCC 58.978 45.833 0.00 0.00 0.00 5.40
1553 1582 5.713861 TCAGTCAAACTACTAACTACTCCCC 59.286 44.000 0.00 0.00 0.00 4.81
1554 1583 6.830873 TCAGTCAAACTACTAACTACTCCC 57.169 41.667 0.00 0.00 0.00 4.30
1578 1607 5.804639 ACTGCAGATCACCAAACTGTAATA 58.195 37.500 23.35 0.00 34.60 0.98
1579 1608 4.655963 ACTGCAGATCACCAAACTGTAAT 58.344 39.130 23.35 0.00 34.60 1.89
1582 1611 2.620115 CAACTGCAGATCACCAAACTGT 59.380 45.455 23.35 0.00 34.60 3.55
1583 1612 2.620115 ACAACTGCAGATCACCAAACTG 59.380 45.455 23.35 4.02 35.14 3.16
1584 1613 2.620115 CACAACTGCAGATCACCAAACT 59.380 45.455 23.35 0.00 0.00 2.66
1585 1614 2.618241 TCACAACTGCAGATCACCAAAC 59.382 45.455 23.35 0.00 0.00 2.93
1742 1848 0.113776 ACAGACGGTCCCTCAGGTAA 59.886 55.000 4.14 0.00 0.00 2.85
1834 1940 5.448654 TGCTTTGTATCCCTTTGATGCTAT 58.551 37.500 0.00 0.00 37.04 2.97
2003 2110 2.550855 GGCAGCATAATCTCCGGATTGA 60.551 50.000 3.57 0.00 41.66 2.57
2096 2203 4.074454 GCTACAACGAGCGGAGTC 57.926 61.111 0.00 0.00 31.57 3.36
2286 2393 6.226787 CCCACAAGTGTTGCCAATATTTTTA 58.773 36.000 0.00 0.00 0.00 1.52
2414 2522 5.535333 CAACTGGTCCGAAAGTAAGAAGTA 58.465 41.667 0.00 0.00 0.00 2.24
2426 2534 3.598715 ACGACGCAACTGGTCCGA 61.599 61.111 0.00 0.00 0.00 4.55
2549 2657 0.817654 CTCACGCATCCTGAGGTACA 59.182 55.000 0.00 0.00 32.85 2.90
2716 2926 1.746220 TCCCCGCCAAATATTTCGTTG 59.254 47.619 0.00 0.00 0.00 4.10
2752 2972 8.648097 CACGCGATAAGAATAATACTATTTGCT 58.352 33.333 15.93 0.00 0.00 3.91
2796 3016 3.633065 GCTAGTCTCCGAGAACAATACCT 59.367 47.826 0.00 0.00 0.00 3.08
3107 3328 0.454600 GAGGTGACATGCTTGCATGG 59.545 55.000 30.86 17.56 36.91 3.66
3283 3504 1.497161 ATACTCCCTCGGTCCCAAAG 58.503 55.000 0.00 0.00 0.00 2.77
3292 3513 8.411683 ACTGTATAGTTGTAAAATACTCCCTCG 58.588 37.037 0.00 0.00 31.66 4.63
3427 3648 4.024556 GCAGAACTATGATACACCACATGC 60.025 45.833 0.00 0.00 0.00 4.06
3429 3650 5.620738 AGCAGAACTATGATACACCACAT 57.379 39.130 0.00 0.00 0.00 3.21
3432 3653 8.100791 AGTTTTTAGCAGAACTATGATACACCA 58.899 33.333 0.00 0.00 34.52 4.17
3435 3656 9.502091 AACAGTTTTTAGCAGAACTATGATACA 57.498 29.630 0.00 0.00 34.52 2.29
3542 3765 6.924612 TGTTACACGCAATACTGTCTCTTAAA 59.075 34.615 0.00 0.00 0.00 1.52
3714 3937 3.567585 TGACAATTGGAATGCTGAAACGA 59.432 39.130 10.83 0.00 0.00 3.85
3749 3972 7.281098 AGAAATGTCATATGCTGAGACTTCAT 58.719 34.615 0.00 0.00 36.23 2.57
3920 4145 5.057149 TGTTTTCAAGGTCTACTTCTGCTC 58.943 41.667 0.00 0.00 37.29 4.26
4134 4359 8.967218 ACAAAATCAACAATTCGATACAACAAG 58.033 29.630 0.00 0.00 0.00 3.16
4183 4408 6.183360 CCAAGAGTAGAAGCACTGAAATTACG 60.183 42.308 0.00 0.00 0.00 3.18
4338 4563 9.364989 CAGAAGAGAAAGGAGATTTAACTACTG 57.635 37.037 0.00 0.00 30.67 2.74
4357 4582 7.496529 TCAACAATTTAAGGTGTCAGAAGAG 57.503 36.000 0.00 0.00 0.00 2.85
4428 4654 1.846439 CCCATGACATCAAGTAGGGGT 59.154 52.381 0.00 0.00 34.76 4.95
4494 4722 8.453320 CACATTCTCTTATCAACATGCAACTAA 58.547 33.333 0.00 0.00 0.00 2.24
4502 4730 8.743085 ATGTAAGCACATTCTCTTATCAACAT 57.257 30.769 0.00 0.00 42.98 2.71
4642 4870 5.908590 TCTCCATGACCATACATAGGATCT 58.091 41.667 0.00 0.00 32.06 2.75
4767 4995 1.730501 ACCTCGACGACAGTATTCGA 58.269 50.000 0.00 5.97 41.78 3.71
4809 5037 7.342026 TCTCTTGACATATTGCAGGTTAGAGTA 59.658 37.037 0.00 0.00 34.38 2.59
4810 5038 6.155221 TCTCTTGACATATTGCAGGTTAGAGT 59.845 38.462 0.00 0.00 34.38 3.24
4811 5039 6.577103 TCTCTTGACATATTGCAGGTTAGAG 58.423 40.000 0.00 0.00 34.20 2.43
4812 5040 6.155221 ACTCTCTTGACATATTGCAGGTTAGA 59.845 38.462 0.00 0.00 0.00 2.10
4813 5041 6.344500 ACTCTCTTGACATATTGCAGGTTAG 58.656 40.000 0.00 0.00 0.00 2.34
5037 5267 1.416401 TCCTGTCAGGCGTTTCTTCTT 59.584 47.619 14.64 0.00 34.61 2.52
5049 5279 1.202627 GCCAGCCTTAGATCCTGTCAG 60.203 57.143 0.00 0.00 0.00 3.51
5142 5372 3.134127 GCGAGGCCCAGCGATTTT 61.134 61.111 13.66 0.00 0.00 1.82
5166 5396 0.994995 CAATGACTGCGGAGAAGTCG 59.005 55.000 12.26 0.00 45.81 4.18
5282 5512 7.637519 CACATTTATATGTCTGCAAAAGAGACG 59.362 37.037 0.00 0.00 43.07 4.18
5294 5524 6.527722 CGCAAAACAAGCACATTTATATGTCT 59.472 34.615 0.00 0.00 43.07 3.41
5329 5561 9.965824 GCCTGTAAAACAAGCACATTTATATAT 57.034 29.630 0.00 0.00 35.69 0.86
5330 5562 8.961634 TGCCTGTAAAACAAGCACATTTATATA 58.038 29.630 0.00 0.00 40.30 0.86
5331 5563 7.835822 TGCCTGTAAAACAAGCACATTTATAT 58.164 30.769 0.00 0.00 40.30 0.86
5332 5564 7.175816 TCTGCCTGTAAAACAAGCACATTTATA 59.824 33.333 0.00 0.00 40.30 0.98
5333 5565 6.015519 TCTGCCTGTAAAACAAGCACATTTAT 60.016 34.615 0.00 0.00 40.30 1.40
5334 5566 5.300539 TCTGCCTGTAAAACAAGCACATTTA 59.699 36.000 0.00 0.00 40.30 1.40
5335 5567 4.099266 TCTGCCTGTAAAACAAGCACATTT 59.901 37.500 0.00 0.00 40.30 2.32
5336 5568 3.636300 TCTGCCTGTAAAACAAGCACATT 59.364 39.130 0.00 0.00 40.30 2.71
5337 5569 3.221771 TCTGCCTGTAAAACAAGCACAT 58.778 40.909 0.00 0.00 40.30 3.21
5338 5570 2.618241 CTCTGCCTGTAAAACAAGCACA 59.382 45.455 0.00 0.00 40.30 4.57
5339 5571 2.618709 ACTCTGCCTGTAAAACAAGCAC 59.381 45.455 0.00 0.00 40.30 4.40
5340 5572 2.618241 CACTCTGCCTGTAAAACAAGCA 59.382 45.455 3.53 3.53 42.67 3.91
5341 5573 2.618709 ACACTCTGCCTGTAAAACAAGC 59.381 45.455 0.00 0.00 36.15 4.01
5342 5574 6.649141 TGTATACACTCTGCCTGTAAAACAAG 59.351 38.462 0.08 0.00 0.00 3.16
5343 5575 6.526526 TGTATACACTCTGCCTGTAAAACAA 58.473 36.000 0.08 0.00 0.00 2.83
5344 5576 6.104146 TGTATACACTCTGCCTGTAAAACA 57.896 37.500 0.08 0.00 0.00 2.83
5345 5577 5.063564 GCTGTATACACTCTGCCTGTAAAAC 59.936 44.000 0.08 0.00 0.00 2.43
5346 5578 5.175859 GCTGTATACACTCTGCCTGTAAAA 58.824 41.667 0.08 0.00 0.00 1.52
5347 5579 4.221924 TGCTGTATACACTCTGCCTGTAAA 59.778 41.667 0.08 0.00 0.00 2.01
5348 5580 3.767131 TGCTGTATACACTCTGCCTGTAA 59.233 43.478 0.08 0.00 0.00 2.41
5349 5581 3.361786 TGCTGTATACACTCTGCCTGTA 58.638 45.455 0.08 0.00 0.00 2.74
5448 5680 3.682858 GCTGACTGCGATAACCAAACTTA 59.317 43.478 0.00 0.00 0.00 2.24
5516 5748 2.993899 GTCACGGTTGGTCAGATAGTTG 59.006 50.000 0.00 0.00 0.00 3.16
5553 5793 3.794717 ACACACATACACACCGTTGTTA 58.205 40.909 0.00 0.00 31.66 2.41
5555 5795 2.319136 ACACACATACACACCGTTGT 57.681 45.000 0.00 0.00 35.84 3.32
5567 5807 8.785329 TTTACATACACATCACATACACACAT 57.215 30.769 0.00 0.00 0.00 3.21
5568 5808 8.785329 ATTTACATACACATCACATACACACA 57.215 30.769 0.00 0.00 0.00 3.72
5590 5830 7.154656 GGAACCAAAGCTTCAAAGACATATTT 58.845 34.615 0.00 0.00 0.00 1.40
5893 6133 6.198216 GCGAGTGAACAAACACATTAAATTGT 59.802 34.615 0.00 0.00 42.45 2.71
5901 6141 2.942376 TGAAGCGAGTGAACAAACACAT 59.058 40.909 0.00 0.00 42.45 3.21
5921 6161 2.352814 CGGAGGGAGTACACAAAGACTG 60.353 54.545 0.00 0.00 0.00 3.51
5980 6225 9.190317 GGAGAATATCTAAAGACCCACAAAAAT 57.810 33.333 0.00 0.00 0.00 1.82
5982 6227 7.695055 TGGAGAATATCTAAAGACCCACAAAA 58.305 34.615 0.00 0.00 0.00 2.44
5983 6228 7.265599 TGGAGAATATCTAAAGACCCACAAA 57.734 36.000 0.00 0.00 0.00 2.83
5984 6229 6.884472 TGGAGAATATCTAAAGACCCACAA 57.116 37.500 0.00 0.00 0.00 3.33
5986 6231 9.442047 CATATTGGAGAATATCTAAAGACCCAC 57.558 37.037 0.00 0.00 33.21 4.61
5987 6232 9.392506 TCATATTGGAGAATATCTAAAGACCCA 57.607 33.333 0.00 0.00 33.21 4.51
5988 6233 9.660180 GTCATATTGGAGAATATCTAAAGACCC 57.340 37.037 0.00 0.00 33.21 4.46
5997 6242 9.737427 CCGTATGTAGTCATATTGGAGAATATC 57.263 37.037 0.00 0.00 38.56 1.63
5998 6243 9.475620 TCCGTATGTAGTCATATTGGAGAATAT 57.524 33.333 0.00 0.00 38.16 1.28
5999 6244 8.873186 TCCGTATGTAGTCATATTGGAGAATA 57.127 34.615 0.00 0.00 38.16 1.75
6000 6245 7.776618 TCCGTATGTAGTCATATTGGAGAAT 57.223 36.000 0.00 0.00 38.16 2.40
6001 6246 7.776618 ATCCGTATGTAGTCATATTGGAGAA 57.223 36.000 13.38 0.00 42.02 2.87
6016 6261 9.535170 AAGCTATGCCTATATATATCCGTATGT 57.465 33.333 0.00 0.00 0.00 2.29
6034 6279 5.263968 TGAACCTACACTCTAAGCTATGC 57.736 43.478 0.00 0.00 0.00 3.14
6040 6285 7.965107 GCAAAATGAATGAACCTACACTCTAAG 59.035 37.037 0.00 0.00 0.00 2.18
6044 6289 6.150140 AGAGCAAAATGAATGAACCTACACTC 59.850 38.462 0.00 0.00 0.00 3.51
6153 6400 2.091278 TCCTCCCTCCGATCACTGTTAT 60.091 50.000 0.00 0.00 0.00 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.