Multiple sequence alignment - TraesCS3B01G233900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G233900 chr3B 100.000 2613 0 0 1 2613 363325974 363323362 0.000000e+00 4826.0
1 TraesCS3B01G233900 chr3B 79.506 405 35 15 2233 2613 20379977 20380357 7.220000e-61 244.0
2 TraesCS3B01G233900 chr3B 91.304 138 11 1 1877 2014 816213680 816213544 1.230000e-43 187.0
3 TraesCS3B01G233900 chr3B 89.041 146 12 4 1860 2003 797463855 797463998 7.430000e-41 178.0
4 TraesCS3B01G233900 chr3B 87.662 154 12 6 1876 2024 436445335 436445184 3.460000e-39 172.0
5 TraesCS3B01G233900 chr3B 95.455 66 1 2 1760 1825 394456903 394456840 1.280000e-18 104.0
6 TraesCS3B01G233900 chr3B 93.182 44 3 0 50 93 649516783 649516740 6.040000e-07 65.8
7 TraesCS3B01G233900 chr3D 95.716 1097 33 4 795 1878 275891182 275890087 0.000000e+00 1753.0
8 TraesCS3B01G233900 chr3D 90.283 247 22 2 4 248 275892027 275891781 3.240000e-84 322.0
9 TraesCS3B01G233900 chr3D 83.794 253 9 7 2002 2232 275890088 275889846 7.330000e-51 211.0
10 TraesCS3B01G233900 chr3A 95.041 1109 42 8 777 1878 364527929 364529031 0.000000e+00 1731.0
11 TraesCS3B01G233900 chr3A 89.837 246 24 1 4 248 364526989 364527234 5.430000e-82 315.0
12 TraesCS3B01G233900 chr3A 83.000 300 38 5 331 624 364527235 364527527 2.580000e-65 259.0
13 TraesCS3B01G233900 chr3A 83.333 120 10 3 2112 2231 364529172 364529281 4.600000e-18 102.0
14 TraesCS3B01G233900 chr3A 90.476 42 3 1 68 108 716530902 716530861 1.000000e-03 54.7
15 TraesCS3B01G233900 chrUn 83.582 402 38 17 2238 2613 93026558 93026957 4.140000e-93 351.0
16 TraesCS3B01G233900 chrUn 95.181 83 4 0 248 330 45125199 45125117 5.870000e-27 132.0
17 TraesCS3B01G233900 chrUn 95.181 83 4 0 248 330 86492393 86492311 5.870000e-27 132.0
18 TraesCS3B01G233900 chrUn 95.181 83 4 0 248 330 359639733 359639651 5.870000e-27 132.0
19 TraesCS3B01G233900 chrUn 95.181 83 4 0 248 330 360797984 360798066 5.870000e-27 132.0
20 TraesCS3B01G233900 chrUn 95.181 83 4 0 248 330 422191066 422190984 5.870000e-27 132.0
21 TraesCS3B01G233900 chrUn 95.181 83 4 0 248 330 441267455 441267537 5.870000e-27 132.0
22 TraesCS3B01G233900 chrUn 96.667 60 1 1 1760 1819 414538893 414538835 5.950000e-17 99.0
23 TraesCS3B01G233900 chr2D 83.010 412 38 12 2232 2613 25325047 25325456 6.920000e-91 344.0
24 TraesCS3B01G233900 chr2D 76.768 297 33 19 2345 2606 628641738 628642033 1.630000e-27 134.0
25 TraesCS3B01G233900 chr1A 81.384 419 42 9 2229 2613 309468402 309467986 2.530000e-80 309.0
26 TraesCS3B01G233900 chr1A 95.181 83 4 0 248 330 94700653 94700735 5.870000e-27 132.0
27 TraesCS3B01G233900 chr1A 78.947 190 35 4 2232 2418 336544211 336544398 9.820000e-25 124.0
28 TraesCS3B01G233900 chr1A 100.000 33 0 0 68 100 501999112 501999080 7.810000e-06 62.1
29 TraesCS3B01G233900 chr6D 81.667 360 31 12 2267 2613 100357155 100357492 1.540000e-67 267.0
30 TraesCS3B01G233900 chr6D 96.970 33 1 0 68 100 306300624 306300656 3.630000e-04 56.5
31 TraesCS3B01G233900 chr7B 80.211 379 43 19 2258 2613 23076866 23076497 3.340000e-64 255.0
32 TraesCS3B01G233900 chr7B 95.276 127 6 0 1877 2003 659420438 659420312 4.410000e-48 202.0
33 TraesCS3B01G233900 chr6B 84.490 245 22 10 2238 2474 144372684 144372920 7.280000e-56 228.0
34 TraesCS3B01G233900 chr6B 75.484 310 57 13 2236 2538 552871358 552871655 1.630000e-27 134.0
35 TraesCS3B01G233900 chr6B 100.000 31 0 0 68 98 581914232 581914202 1.010000e-04 58.4
36 TraesCS3B01G233900 chr2B 92.308 130 10 0 1874 2003 706184022 706184151 4.440000e-43 185.0
37 TraesCS3B01G233900 chr2B 88.966 145 13 3 1876 2019 525520830 525520972 2.670000e-40 176.0
38 TraesCS3B01G233900 chr1B 92.366 131 8 2 1877 2006 286320076 286319947 4.440000e-43 185.0
39 TraesCS3B01G233900 chr1B 88.079 151 15 3 1867 2016 649332720 649332868 2.670000e-40 176.0
40 TraesCS3B01G233900 chr1B 93.333 45 3 0 56 100 543462819 543462863 1.680000e-07 67.6
41 TraesCS3B01G233900 chr4A 91.667 132 11 0 1876 2007 177639139 177639008 1.600000e-42 183.0
42 TraesCS3B01G233900 chr4B 95.181 83 4 0 248 330 209256974 209257056 5.870000e-27 132.0
43 TraesCS3B01G233900 chr1D 95.181 83 4 0 248 330 493807110 493807192 5.870000e-27 132.0
44 TraesCS3B01G233900 chr1D 96.667 60 1 1 1760 1819 254447187 254447245 5.950000e-17 99.0
45 TraesCS3B01G233900 chr5D 96.667 60 1 1 1760 1819 6164763 6164705 5.950000e-17 99.0
46 TraesCS3B01G233900 chr5D 96.667 60 1 1 1760 1819 6262755 6262697 5.950000e-17 99.0
47 TraesCS3B01G233900 chr5D 96.667 60 1 1 1760 1819 6263270 6263212 5.950000e-17 99.0
48 TraesCS3B01G233900 chr5D 96.667 60 1 1 1760 1819 6263790 6263732 5.950000e-17 99.0
49 TraesCS3B01G233900 chr7D 94.118 34 2 0 68 101 571006162 571006129 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G233900 chr3B 363323362 363325974 2612 True 4826.00 4826 100.00000 1 2613 1 chr3B.!!$R1 2612
1 TraesCS3B01G233900 chr3D 275889846 275892027 2181 True 762.00 1753 89.93100 4 2232 3 chr3D.!!$R1 2228
2 TraesCS3B01G233900 chr3A 364526989 364529281 2292 False 601.75 1731 87.80275 4 2231 4 chr3A.!!$F1 2227

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
474 477 0.17899 ATTGATCCCTAAAGCCCGCC 60.179 55.0 0.0 0.0 0.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2275 2597 0.109319 CGGCGCTGTAAATGCCTTTT 60.109 50.0 8.45 0.0 46.67 2.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 56 9.716507 GTTTTTATATCAATTTAAGCTCGCAGA 57.283 29.630 0.00 0.00 0.00 4.26
60 62 4.687018 TCAATTTAAGCTCGCAGACGTTTA 59.313 37.500 0.00 0.00 41.18 2.01
81 83 1.279846 TGGGGTCGGATTTACCAAGTC 59.720 52.381 0.00 0.00 38.87 3.01
106 109 4.035675 GGTTGTAGATGCTCTAATTGCACC 59.964 45.833 0.00 0.00 43.59 5.01
109 112 3.266510 AGATGCTCTAATTGCACCGAA 57.733 42.857 0.00 0.00 43.59 4.30
151 154 9.241317 CTCATGCAGAAATGAAATAAACATACC 57.759 33.333 0.00 0.00 36.16 2.73
152 155 8.747471 TCATGCAGAAATGAAATAAACATACCA 58.253 29.630 0.00 0.00 33.63 3.25
229 232 7.539712 TTTAGACATGAGAAAATCTTAGGCG 57.460 36.000 0.00 0.00 0.00 5.52
248 251 1.459450 GGGTCGAATTTAGCAAGGCA 58.541 50.000 0.00 0.00 0.00 4.75
249 252 1.401905 GGGTCGAATTTAGCAAGGCAG 59.598 52.381 0.00 0.00 0.00 4.85
250 253 1.401905 GGTCGAATTTAGCAAGGCAGG 59.598 52.381 0.00 0.00 0.00 4.85
251 254 2.356135 GTCGAATTTAGCAAGGCAGGA 58.644 47.619 0.00 0.00 0.00 3.86
252 255 2.747446 GTCGAATTTAGCAAGGCAGGAA 59.253 45.455 0.00 0.00 0.00 3.36
253 256 2.747446 TCGAATTTAGCAAGGCAGGAAC 59.253 45.455 0.00 0.00 0.00 3.62
254 257 2.487762 CGAATTTAGCAAGGCAGGAACA 59.512 45.455 0.00 0.00 0.00 3.18
255 258 3.057596 CGAATTTAGCAAGGCAGGAACAA 60.058 43.478 0.00 0.00 0.00 2.83
256 259 4.558496 CGAATTTAGCAAGGCAGGAACAAA 60.558 41.667 0.00 0.00 0.00 2.83
257 260 5.482006 GAATTTAGCAAGGCAGGAACAAAT 58.518 37.500 0.00 0.00 0.00 2.32
258 261 4.519540 TTTAGCAAGGCAGGAACAAATC 57.480 40.909 0.00 0.00 0.00 2.17
259 262 2.299326 AGCAAGGCAGGAACAAATCT 57.701 45.000 0.00 0.00 0.00 2.40
260 263 3.439857 AGCAAGGCAGGAACAAATCTA 57.560 42.857 0.00 0.00 0.00 1.98
261 264 3.973425 AGCAAGGCAGGAACAAATCTAT 58.027 40.909 0.00 0.00 0.00 1.98
262 265 3.950395 AGCAAGGCAGGAACAAATCTATC 59.050 43.478 0.00 0.00 0.00 2.08
263 266 3.696051 GCAAGGCAGGAACAAATCTATCA 59.304 43.478 0.00 0.00 0.00 2.15
264 267 4.158394 GCAAGGCAGGAACAAATCTATCAA 59.842 41.667 0.00 0.00 0.00 2.57
265 268 5.678107 GCAAGGCAGGAACAAATCTATCAAG 60.678 44.000 0.00 0.00 0.00 3.02
266 269 5.184892 AGGCAGGAACAAATCTATCAAGT 57.815 39.130 0.00 0.00 0.00 3.16
267 270 5.574188 AGGCAGGAACAAATCTATCAAGTT 58.426 37.500 0.00 0.00 0.00 2.66
268 271 6.012745 AGGCAGGAACAAATCTATCAAGTTT 58.987 36.000 0.00 0.00 0.00 2.66
269 272 6.151817 AGGCAGGAACAAATCTATCAAGTTTC 59.848 38.462 0.00 0.00 0.00 2.78
270 273 6.151817 GGCAGGAACAAATCTATCAAGTTTCT 59.848 38.462 0.00 0.00 0.00 2.52
271 274 7.336931 GGCAGGAACAAATCTATCAAGTTTCTA 59.663 37.037 0.00 0.00 0.00 2.10
272 275 8.178313 GCAGGAACAAATCTATCAAGTTTCTAC 58.822 37.037 0.00 0.00 0.00 2.59
273 276 9.442047 CAGGAACAAATCTATCAAGTTTCTACT 57.558 33.333 0.00 0.00 35.68 2.57
297 300 8.308207 ACTAAAACAGAACTCTAGAATCAGTCC 58.692 37.037 7.69 0.00 0.00 3.85
298 301 4.974368 ACAGAACTCTAGAATCAGTCCG 57.026 45.455 7.69 0.00 0.00 4.79
299 302 4.337145 ACAGAACTCTAGAATCAGTCCGT 58.663 43.478 7.69 0.00 0.00 4.69
300 303 4.396790 ACAGAACTCTAGAATCAGTCCGTC 59.603 45.833 7.69 0.00 0.00 4.79
301 304 4.638421 CAGAACTCTAGAATCAGTCCGTCT 59.362 45.833 7.69 0.00 0.00 4.18
302 305 4.638421 AGAACTCTAGAATCAGTCCGTCTG 59.362 45.833 7.69 0.00 44.85 3.51
303 306 3.283751 ACTCTAGAATCAGTCCGTCTGG 58.716 50.000 0.00 0.00 43.76 3.86
304 307 3.283751 CTCTAGAATCAGTCCGTCTGGT 58.716 50.000 0.00 0.00 43.76 4.00
306 309 4.851843 TCTAGAATCAGTCCGTCTGGTTA 58.148 43.478 3.86 0.00 46.20 2.85
307 310 5.258841 TCTAGAATCAGTCCGTCTGGTTAA 58.741 41.667 3.86 0.00 46.20 2.01
308 311 4.457834 AGAATCAGTCCGTCTGGTTAAG 57.542 45.455 3.86 0.00 46.20 1.85
309 312 2.674796 ATCAGTCCGTCTGGTTAAGC 57.325 50.000 0.00 0.00 43.76 3.09
310 313 1.334160 TCAGTCCGTCTGGTTAAGCA 58.666 50.000 7.22 7.22 43.76 3.91
311 314 1.899814 TCAGTCCGTCTGGTTAAGCAT 59.100 47.619 7.98 0.00 43.76 3.79
312 315 2.301870 TCAGTCCGTCTGGTTAAGCATT 59.698 45.455 7.98 0.00 43.76 3.56
313 316 2.416547 CAGTCCGTCTGGTTAAGCATTG 59.583 50.000 7.98 0.00 40.23 2.82
314 317 1.737793 GTCCGTCTGGTTAAGCATTGG 59.262 52.381 7.98 10.22 36.30 3.16
315 318 1.094785 CCGTCTGGTTAAGCATTGGG 58.905 55.000 7.98 5.79 0.00 4.12
316 319 1.339631 CCGTCTGGTTAAGCATTGGGA 60.340 52.381 7.98 0.00 0.00 4.37
317 320 2.432444 CGTCTGGTTAAGCATTGGGAA 58.568 47.619 7.98 0.00 0.00 3.97
318 321 2.420022 CGTCTGGTTAAGCATTGGGAAG 59.580 50.000 7.98 0.85 0.00 3.46
319 322 2.164422 GTCTGGTTAAGCATTGGGAAGC 59.836 50.000 7.98 0.00 0.00 3.86
320 323 2.041620 TCTGGTTAAGCATTGGGAAGCT 59.958 45.455 7.98 0.00 44.31 3.74
321 324 2.165030 CTGGTTAAGCATTGGGAAGCTG 59.835 50.000 7.98 0.00 41.70 4.24
322 325 2.224992 TGGTTAAGCATTGGGAAGCTGA 60.225 45.455 2.54 0.00 41.70 4.26
323 326 3.026694 GGTTAAGCATTGGGAAGCTGAT 58.973 45.455 0.00 0.00 41.70 2.90
324 327 4.207165 GGTTAAGCATTGGGAAGCTGATA 58.793 43.478 0.00 0.00 41.70 2.15
325 328 4.276926 GGTTAAGCATTGGGAAGCTGATAG 59.723 45.833 0.00 0.00 41.70 2.08
326 329 2.653234 AGCATTGGGAAGCTGATAGG 57.347 50.000 0.00 0.00 40.13 2.57
327 330 1.849039 AGCATTGGGAAGCTGATAGGT 59.151 47.619 0.00 0.00 40.13 3.08
328 331 2.158696 AGCATTGGGAAGCTGATAGGTC 60.159 50.000 0.00 0.00 40.13 3.85
329 332 2.487934 CATTGGGAAGCTGATAGGTCG 58.512 52.381 0.00 0.00 0.00 4.79
352 355 8.379902 GTCGCATTTTATTTAATCAAAACAGGG 58.620 33.333 0.00 3.57 0.00 4.45
371 374 6.633856 ACAGGGAATTGCAAGTCAATAAATC 58.366 36.000 26.35 8.61 44.23 2.17
372 375 6.211184 ACAGGGAATTGCAAGTCAATAAATCA 59.789 34.615 26.35 0.00 44.23 2.57
373 376 7.098477 CAGGGAATTGCAAGTCAATAAATCAA 58.902 34.615 26.35 0.00 44.23 2.57
374 377 7.767198 CAGGGAATTGCAAGTCAATAAATCAAT 59.233 33.333 26.35 0.00 44.23 2.57
375 378 8.980596 AGGGAATTGCAAGTCAATAAATCAATA 58.019 29.630 26.35 0.00 44.23 1.90
376 379 9.598517 GGGAATTGCAAGTCAATAAATCAATAA 57.401 29.630 26.35 0.00 44.23 1.40
462 465 9.601217 ACAATCGGTATTAGCTAATATTGATCC 57.399 33.333 29.51 22.94 30.93 3.36
474 477 0.178990 ATTGATCCCTAAAGCCCGCC 60.179 55.000 0.00 0.00 0.00 6.13
480 483 2.433664 CTAAAGCCCGCCGACGTT 60.434 61.111 0.00 0.00 37.70 3.99
493 496 2.344741 GCCGACGTTCTCAATTAGTGAC 59.655 50.000 0.00 0.00 31.13 3.67
504 507 1.174783 ATTAGTGACCGAGCACGTCT 58.825 50.000 2.18 0.00 43.42 4.18
505 508 1.812235 TTAGTGACCGAGCACGTCTA 58.188 50.000 2.18 0.00 43.42 2.59
516 519 2.930682 GAGCACGTCTATTTTGACCCTC 59.069 50.000 0.00 0.00 33.70 4.30
526 535 9.938280 CGTCTATTTTGACCCTCCATTTATATA 57.062 33.333 0.00 0.00 33.70 0.86
587 596 1.735018 CCGGTCAAATGCGTGTGATTA 59.265 47.619 1.17 0.00 0.00 1.75
588 597 2.160615 CCGGTCAAATGCGTGTGATTAA 59.839 45.455 1.17 0.00 0.00 1.40
601 610 5.279006 GCGTGTGATTAATAGAGATGGAGGA 60.279 44.000 0.00 0.00 0.00 3.71
652 911 2.730129 AAAAATGGTCCGGCTGGGCT 62.730 55.000 17.53 0.00 40.80 5.19
666 925 2.401766 GGGCTGCATCAGGTTGTCG 61.402 63.158 0.50 0.00 31.21 4.35
670 929 0.247460 CTGCATCAGGTTGTCGGAGA 59.753 55.000 0.00 0.00 0.00 3.71
729 1010 2.434359 CGGAGGTTCGGTTGAGCC 60.434 66.667 0.00 0.00 45.26 4.70
751 1038 5.173312 GCCGCTTTTCTTTTACTTTTCTGTC 59.827 40.000 0.00 0.00 0.00 3.51
753 1040 5.395486 CGCTTTTCTTTTACTTTTCTGTCCG 59.605 40.000 0.00 0.00 0.00 4.79
755 1042 5.761165 TTTCTTTTACTTTTCTGTCCGGG 57.239 39.130 0.00 0.00 0.00 5.73
759 1046 2.642154 TACTTTTCTGTCCGGGCAAA 57.358 45.000 11.40 4.77 0.00 3.68
760 1047 1.995376 ACTTTTCTGTCCGGGCAAAT 58.005 45.000 11.40 0.00 0.00 2.32
763 1050 1.253100 TTTCTGTCCGGGCAAATTCC 58.747 50.000 11.40 0.00 0.00 3.01
764 1051 0.610785 TTCTGTCCGGGCAAATTCCC 60.611 55.000 11.40 0.00 43.02 3.97
772 1059 1.605753 GGGCAAATTCCCGGATAGTC 58.394 55.000 0.73 0.00 36.38 2.59
773 1060 1.143073 GGGCAAATTCCCGGATAGTCT 59.857 52.381 0.73 0.00 36.38 3.24
774 1061 2.222027 GGCAAATTCCCGGATAGTCTG 58.778 52.381 0.73 0.00 0.00 3.51
775 1062 2.158813 GGCAAATTCCCGGATAGTCTGA 60.159 50.000 0.73 0.00 0.00 3.27
776 1063 3.496870 GGCAAATTCCCGGATAGTCTGAT 60.497 47.826 0.73 0.00 0.00 2.90
777 1064 4.137543 GCAAATTCCCGGATAGTCTGATT 58.862 43.478 0.73 0.00 0.00 2.57
778 1065 4.023707 GCAAATTCCCGGATAGTCTGATTG 60.024 45.833 0.73 0.00 0.00 2.67
785 1072 3.118775 CCGGATAGTCTGATTGTTGGACA 60.119 47.826 0.00 0.00 32.98 4.02
788 1075 5.235186 CGGATAGTCTGATTGTTGGACATTC 59.765 44.000 0.00 0.00 32.98 2.67
792 1079 3.997021 GTCTGATTGTTGGACATTCGAGT 59.003 43.478 0.00 0.00 32.73 4.18
807 1094 2.165167 TCGAGTGGTCCGTTTGTAGAT 58.835 47.619 0.00 0.00 0.00 1.98
812 1099 1.084289 GGTCCGTTTGTAGATGGTGC 58.916 55.000 0.00 0.00 0.00 5.01
949 1236 1.234615 AAAACCATGCGACACCTCCG 61.235 55.000 0.00 0.00 0.00 4.63
957 1244 1.359459 GCGACACCTCCGGTTTCATC 61.359 60.000 0.00 0.00 32.45 2.92
966 1253 1.520564 CGGTTTCATCGCATCCGGA 60.521 57.895 6.61 6.61 37.92 5.14
1013 1302 3.258123 GCTTCACTTTCTCCTCTCTCTGT 59.742 47.826 0.00 0.00 0.00 3.41
1047 1341 0.694444 TCCATTCCTCCTACCTGCCC 60.694 60.000 0.00 0.00 0.00 5.36
1083 1377 0.034896 TCGCAAGGGAGGAACAGAAC 59.965 55.000 0.00 0.00 38.47 3.01
1111 1405 2.735857 CCTGCCGCTGCTTTTTGC 60.736 61.111 0.70 0.00 43.25 3.68
1491 1785 3.875727 CGTGTCCTAGCTACTAGCAGTAA 59.124 47.826 10.73 0.00 45.56 2.24
1660 1960 3.317150 TGATGTCAATGACTGTCGTGTC 58.683 45.455 14.97 2.90 37.47 3.67
1738 2038 2.489938 AGTGGGTGATTTGCATACGT 57.510 45.000 0.00 0.00 0.00 3.57
1756 2056 2.009051 CGTGGATGCTGTTGATGCTTA 58.991 47.619 0.00 0.00 0.00 3.09
1858 2158 2.039084 AGCTGGTTCTAGGAGTTGTTGG 59.961 50.000 0.00 0.00 0.00 3.77
1878 2178 8.649973 TGTTGGTGTTTGGTTTTATGATTTAC 57.350 30.769 0.00 0.00 0.00 2.01
1880 2180 8.974408 GTTGGTGTTTGGTTTTATGATTTACTC 58.026 33.333 0.00 0.00 0.00 2.59
1881 2181 7.662897 TGGTGTTTGGTTTTATGATTTACTCC 58.337 34.615 0.00 0.00 0.00 3.85
1882 2182 7.507616 TGGTGTTTGGTTTTATGATTTACTCCT 59.492 33.333 0.00 0.00 0.00 3.69
1885 2185 8.581578 TGTTTGGTTTTATGATTTACTCCTTCC 58.418 33.333 0.00 0.00 0.00 3.46
1886 2186 6.995511 TGGTTTTATGATTTACTCCTTCCG 57.004 37.500 0.00 0.00 0.00 4.30
1888 2188 6.596497 TGGTTTTATGATTTACTCCTTCCGTC 59.404 38.462 0.00 0.00 0.00 4.79
1889 2189 6.037940 GGTTTTATGATTTACTCCTTCCGTCC 59.962 42.308 0.00 0.00 0.00 4.79
1890 2190 2.953466 TGATTTACTCCTTCCGTCCG 57.047 50.000 0.00 0.00 0.00 4.79
1891 2191 2.449464 TGATTTACTCCTTCCGTCCGA 58.551 47.619 0.00 0.00 0.00 4.55
1892 2192 2.827322 TGATTTACTCCTTCCGTCCGAA 59.173 45.455 0.00 0.00 0.00 4.30
1893 2193 3.258872 TGATTTACTCCTTCCGTCCGAAA 59.741 43.478 0.00 0.00 0.00 3.46
1894 2194 3.749665 TTTACTCCTTCCGTCCGAAAA 57.250 42.857 0.00 0.00 0.00 2.29
1896 2196 5.404466 TTTACTCCTTCCGTCCGAAAATA 57.596 39.130 0.00 0.00 0.00 1.40
1900 2200 3.592059 TCCTTCCGTCCGAAAATACTTG 58.408 45.455 0.00 0.00 0.00 3.16
1901 2201 3.007182 TCCTTCCGTCCGAAAATACTTGT 59.993 43.478 0.00 0.00 0.00 3.16
1903 2203 3.663995 TCCGTCCGAAAATACTTGTCA 57.336 42.857 0.00 0.00 0.00 3.58
1904 2204 4.196626 TCCGTCCGAAAATACTTGTCAT 57.803 40.909 0.00 0.00 0.00 3.06
1905 2205 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
1906 2206 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
1910 2210 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
1911 2211 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
1912 2212 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
1913 2213 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
1914 2214 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
1922 2222 8.906867 ACTTGTCATCAAAATGGATACAATAGG 58.093 33.333 0.00 0.00 41.22 2.57
1923 2223 9.123902 CTTGTCATCAAAATGGATACAATAGGA 57.876 33.333 0.00 0.00 41.22 2.94
1978 2278 9.643693 ACATCTCATTTTATTCATTTTGGTGAC 57.356 29.630 0.00 0.00 0.00 3.67
1979 2279 9.642327 CATCTCATTTTATTCATTTTGGTGACA 57.358 29.630 0.00 0.00 39.83 3.58
1992 2292 3.992943 TGGTGACAAGTATTTCCGGAT 57.007 42.857 4.15 0.00 37.44 4.18
1993 2293 3.605634 TGGTGACAAGTATTTCCGGATG 58.394 45.455 4.15 0.97 37.44 3.51
1994 2294 2.943033 GGTGACAAGTATTTCCGGATGG 59.057 50.000 4.15 0.00 0.00 3.51
1995 2295 3.370103 GGTGACAAGTATTTCCGGATGGA 60.370 47.826 4.15 0.00 44.61 3.41
1996 2296 7.597672 TGGTGACAAGTATTTCCGGATGGAG 62.598 48.000 4.15 0.00 41.63 3.86
2007 2307 4.150897 TCCGGATGGAGGAAGTATTTTG 57.849 45.455 0.00 0.00 40.17 2.44
2008 2308 3.521937 TCCGGATGGAGGAAGTATTTTGT 59.478 43.478 0.00 0.00 40.17 2.83
2009 2309 3.877508 CCGGATGGAGGAAGTATTTTGTC 59.122 47.826 0.00 0.00 37.49 3.18
2046 2346 4.273148 ACGAACTGGTCAGATTAGCTTT 57.727 40.909 4.84 0.00 0.00 3.51
2090 2390 1.463674 GATTGCGTGGAAGGGTGAAT 58.536 50.000 0.00 0.00 0.00 2.57
2108 2408 6.318900 GGGTGAATGGAAACCTGTATTCTTAG 59.681 42.308 0.00 0.00 36.64 2.18
2109 2409 7.110155 GGTGAATGGAAACCTGTATTCTTAGA 58.890 38.462 0.00 0.00 33.40 2.10
2110 2410 7.610305 GGTGAATGGAAACCTGTATTCTTAGAA 59.390 37.037 0.00 0.00 33.40 2.10
2156 2478 3.184541 TCAAACCTAATCGAGCTTACGC 58.815 45.455 0.00 0.00 0.00 4.42
2157 2479 1.836383 AACCTAATCGAGCTTACGCG 58.164 50.000 3.53 3.53 42.32 6.01
2178 2500 5.107837 CGCGATATAGAAGACCAAATGACAC 60.108 44.000 0.00 0.00 0.00 3.67
2187 2509 4.389374 AGACCAAATGACACGAAACTCAT 58.611 39.130 0.00 0.00 0.00 2.90
2193 2515 4.732285 ATGACACGAAACTCATGTGTTC 57.268 40.909 13.19 6.77 46.13 3.18
2216 2538 7.962934 TCTTTTTATGGATTTCATTAACGCG 57.037 32.000 3.53 3.53 37.30 6.01
2220 2542 8.918961 TTTTATGGATTTCATTAACGCGAAAT 57.081 26.923 15.93 9.55 42.92 2.17
2232 2554 7.914871 TCATTAACGCGAAATGAATCATCAAAT 59.085 29.630 27.22 3.13 39.70 2.32
2233 2555 8.533965 CATTAACGCGAAATGAATCATCAAATT 58.466 29.630 24.65 3.14 39.49 1.82
2234 2556 5.937165 ACGCGAAATGAATCATCAAATTG 57.063 34.783 15.93 0.00 39.49 2.32
2235 2557 5.401550 ACGCGAAATGAATCATCAAATTGT 58.598 33.333 15.93 0.00 39.49 2.71
2236 2558 5.863397 ACGCGAAATGAATCATCAAATTGTT 59.137 32.000 15.93 0.00 39.49 2.83
2237 2559 7.026562 ACGCGAAATGAATCATCAAATTGTTA 58.973 30.769 15.93 0.00 39.49 2.41
2238 2560 7.218773 ACGCGAAATGAATCATCAAATTGTTAG 59.781 33.333 15.93 0.00 39.49 2.34
2239 2561 7.429051 CGCGAAATGAATCATCAAATTGTTAGA 59.571 33.333 0.00 0.00 39.49 2.10
2240 2562 8.740369 GCGAAATGAATCATCAAATTGTTAGAG 58.260 33.333 0.00 0.00 39.49 2.43
2241 2563 8.740369 CGAAATGAATCATCAAATTGTTAGAGC 58.260 33.333 0.00 0.00 39.49 4.09
2242 2564 9.577110 GAAATGAATCATCAAATTGTTAGAGCA 57.423 29.630 0.00 0.00 39.49 4.26
2244 2566 9.745880 AATGAATCATCAAATTGTTAGAGCATC 57.254 29.630 0.00 0.00 39.49 3.91
2245 2567 8.515695 TGAATCATCAAATTGTTAGAGCATCT 57.484 30.769 0.00 0.00 40.37 2.90
2246 2568 8.963725 TGAATCATCAAATTGTTAGAGCATCTT 58.036 29.630 0.00 0.00 38.66 2.40
2257 2579 2.846039 GAGCATCTTCAACTGGCATG 57.154 50.000 0.00 0.00 0.00 4.06
2258 2580 0.815734 AGCATCTTCAACTGGCATGC 59.184 50.000 9.90 9.90 40.20 4.06
2259 2581 0.528924 GCATCTTCAACTGGCATGCA 59.471 50.000 21.36 4.79 39.76 3.96
2260 2582 1.067425 GCATCTTCAACTGGCATGCAA 60.067 47.619 21.36 7.49 39.76 4.08
2261 2583 2.602878 CATCTTCAACTGGCATGCAAC 58.397 47.619 21.36 3.15 0.00 4.17
2262 2584 0.592637 TCTTCAACTGGCATGCAACG 59.407 50.000 21.36 9.26 0.00 4.10
2263 2585 1.005294 CTTCAACTGGCATGCAACGC 61.005 55.000 21.36 1.89 0.00 4.84
2264 2586 2.730006 TTCAACTGGCATGCAACGCG 62.730 55.000 21.36 3.53 0.00 6.01
2265 2587 4.705519 AACTGGCATGCAACGCGC 62.706 61.111 21.36 0.00 42.89 6.86
2275 2597 4.896028 CAACGCGCGGCACACAAA 62.896 61.111 35.22 0.00 0.00 2.83
2276 2598 4.180946 AACGCGCGGCACACAAAA 62.181 55.556 35.22 0.00 0.00 2.44
2277 2599 3.685214 AACGCGCGGCACACAAAAA 62.685 52.632 35.22 0.00 0.00 1.94
2293 2615 2.078849 AAAAAGGCATTTACAGCGCC 57.921 45.000 2.29 0.00 46.62 6.53
2296 2618 2.874751 GGCATTTACAGCGCCGTT 59.125 55.556 2.29 0.00 35.79 4.44
2297 2619 1.211709 GGCATTTACAGCGCCGTTT 59.788 52.632 2.29 0.00 35.79 3.60
2298 2620 0.448593 GGCATTTACAGCGCCGTTTA 59.551 50.000 2.29 0.00 35.79 2.01
2299 2621 1.530856 GCATTTACAGCGCCGTTTAC 58.469 50.000 2.29 0.00 0.00 2.01
2300 2622 1.135916 GCATTTACAGCGCCGTTTACA 60.136 47.619 2.29 0.00 0.00 2.41
2301 2623 2.477189 GCATTTACAGCGCCGTTTACAT 60.477 45.455 2.29 0.00 0.00 2.29
2302 2624 2.884663 TTTACAGCGCCGTTTACATG 57.115 45.000 2.29 0.00 0.00 3.21
2303 2625 2.081725 TTACAGCGCCGTTTACATGA 57.918 45.000 2.29 0.00 0.00 3.07
2304 2626 1.635844 TACAGCGCCGTTTACATGAG 58.364 50.000 2.29 0.00 0.00 2.90
2305 2627 0.320421 ACAGCGCCGTTTACATGAGT 60.320 50.000 2.29 0.00 0.00 3.41
2306 2628 0.796312 CAGCGCCGTTTACATGAGTT 59.204 50.000 2.29 0.00 0.00 3.01
2307 2629 1.196808 CAGCGCCGTTTACATGAGTTT 59.803 47.619 2.29 0.00 0.00 2.66
2308 2630 1.877443 AGCGCCGTTTACATGAGTTTT 59.123 42.857 2.29 0.00 0.00 2.43
2309 2631 2.292292 AGCGCCGTTTACATGAGTTTTT 59.708 40.909 2.29 0.00 0.00 1.94
2310 2632 2.403698 GCGCCGTTTACATGAGTTTTTG 59.596 45.455 0.00 0.00 0.00 2.44
2311 2633 2.403698 CGCCGTTTACATGAGTTTTTGC 59.596 45.455 0.00 0.00 0.00 3.68
2312 2634 3.376540 GCCGTTTACATGAGTTTTTGCA 58.623 40.909 0.00 0.00 0.00 4.08
2313 2635 3.181575 GCCGTTTACATGAGTTTTTGCAC 59.818 43.478 0.00 0.00 0.00 4.57
2314 2636 3.420576 CCGTTTACATGAGTTTTTGCACG 59.579 43.478 0.00 0.00 0.00 5.34
2315 2637 3.121828 CGTTTACATGAGTTTTTGCACGC 60.122 43.478 0.00 0.00 0.00 5.34
2316 2638 2.697431 TACATGAGTTTTTGCACGCC 57.303 45.000 0.00 0.00 0.00 5.68
2317 2639 0.317770 ACATGAGTTTTTGCACGCCG 60.318 50.000 0.00 0.00 0.00 6.46
2318 2640 1.371635 ATGAGTTTTTGCACGCCGC 60.372 52.632 0.00 0.00 42.89 6.53
2352 2674 2.113860 AGCTTCCGCTGCAAAATAGA 57.886 45.000 0.00 0.00 46.86 1.98
2353 2675 2.012673 AGCTTCCGCTGCAAAATAGAG 58.987 47.619 0.00 0.00 46.86 2.43
2354 2676 1.532713 GCTTCCGCTGCAAAATAGAGC 60.533 52.381 0.00 0.00 0.00 4.09
2357 2679 4.275282 GCTGCAAAATAGAGCGCG 57.725 55.556 0.00 0.00 0.00 6.86
2358 2680 1.936398 GCTGCAAAATAGAGCGCGC 60.936 57.895 26.66 26.66 0.00 6.86
2359 2681 1.425031 CTGCAAAATAGAGCGCGCA 59.575 52.632 35.10 13.97 0.00 6.09
2360 2682 0.179192 CTGCAAAATAGAGCGCGCAA 60.179 50.000 35.10 18.82 0.00 4.85
2361 2683 0.179192 TGCAAAATAGAGCGCGCAAG 60.179 50.000 35.10 13.68 43.44 4.01
2375 2697 3.123620 CAAGCCGCTCCAGCAGAC 61.124 66.667 0.00 0.00 42.21 3.51
2376 2698 4.749310 AAGCCGCTCCAGCAGACG 62.749 66.667 0.00 0.00 42.21 4.18
2381 2703 4.498520 GCTCCAGCAGACGCGCTA 62.499 66.667 5.73 0.00 45.49 4.26
2382 2704 2.415010 CTCCAGCAGACGCGCTAT 59.585 61.111 5.73 0.00 45.49 2.97
2383 2705 1.654774 CTCCAGCAGACGCGCTATA 59.345 57.895 5.73 0.00 45.49 1.31
2384 2706 0.242286 CTCCAGCAGACGCGCTATAT 59.758 55.000 5.73 0.00 45.49 0.86
2385 2707 0.673985 TCCAGCAGACGCGCTATATT 59.326 50.000 5.73 0.00 45.49 1.28
2386 2708 1.068588 TCCAGCAGACGCGCTATATTT 59.931 47.619 5.73 0.00 45.49 1.40
2387 2709 2.295070 TCCAGCAGACGCGCTATATTTA 59.705 45.455 5.73 0.00 45.49 1.40
2388 2710 3.056821 TCCAGCAGACGCGCTATATTTAT 60.057 43.478 5.73 0.00 45.49 1.40
2389 2711 3.679980 CCAGCAGACGCGCTATATTTATT 59.320 43.478 5.73 0.00 45.49 1.40
2390 2712 4.201628 CCAGCAGACGCGCTATATTTATTC 60.202 45.833 5.73 0.00 45.49 1.75
2391 2713 4.623167 CAGCAGACGCGCTATATTTATTCT 59.377 41.667 5.73 0.00 45.49 2.40
2392 2714 5.119279 CAGCAGACGCGCTATATTTATTCTT 59.881 40.000 5.73 0.00 45.49 2.52
2393 2715 5.696724 AGCAGACGCGCTATATTTATTCTTT 59.303 36.000 5.73 0.00 45.49 2.52
2394 2716 6.202954 AGCAGACGCGCTATATTTATTCTTTT 59.797 34.615 5.73 0.00 45.49 2.27
2395 2717 6.851330 GCAGACGCGCTATATTTATTCTTTTT 59.149 34.615 5.73 0.00 0.00 1.94
2422 2744 6.964741 ACTACGACTCGATACACATATAGG 57.035 41.667 5.20 0.00 0.00 2.57
2423 2745 4.681835 ACGACTCGATACACATATAGGC 57.318 45.455 5.20 0.00 0.00 3.93
2424 2746 4.070009 ACGACTCGATACACATATAGGCA 58.930 43.478 5.20 0.00 0.00 4.75
2425 2747 4.700692 ACGACTCGATACACATATAGGCAT 59.299 41.667 5.20 0.00 0.00 4.40
2426 2748 5.878669 ACGACTCGATACACATATAGGCATA 59.121 40.000 5.20 0.00 0.00 3.14
2427 2749 6.037281 ACGACTCGATACACATATAGGCATAG 59.963 42.308 5.20 0.00 0.00 2.23
2428 2750 6.258068 CGACTCGATACACATATAGGCATAGA 59.742 42.308 0.00 0.00 0.00 1.98
2429 2751 7.041712 CGACTCGATACACATATAGGCATAGAT 60.042 40.741 0.00 0.00 0.00 1.98
2430 2752 9.274206 GACTCGATACACATATAGGCATAGATA 57.726 37.037 0.00 0.00 0.00 1.98
2431 2753 9.278978 ACTCGATACACATATAGGCATAGATAG 57.721 37.037 0.00 0.00 0.00 2.08
2432 2754 9.495572 CTCGATACACATATAGGCATAGATAGA 57.504 37.037 0.00 0.00 0.00 1.98
2512 2834 9.758651 AAAAATGATACATACATAGTGCGTAGA 57.241 29.630 0.00 0.00 0.00 2.59
2513 2835 9.929180 AAAATGATACATACATAGTGCGTAGAT 57.071 29.630 0.00 0.00 0.00 1.98
2516 2838 8.788325 TGATACATACATAGTGCGTAGATAGT 57.212 34.615 0.00 0.00 0.00 2.12
2517 2839 9.227777 TGATACATACATAGTGCGTAGATAGTT 57.772 33.333 0.00 0.00 0.00 2.24
2518 2840 9.705471 GATACATACATAGTGCGTAGATAGTTC 57.295 37.037 0.00 0.00 0.00 3.01
2519 2841 7.506328 ACATACATAGTGCGTAGATAGTTCA 57.494 36.000 0.00 0.00 0.00 3.18
2520 2842 8.112016 ACATACATAGTGCGTAGATAGTTCAT 57.888 34.615 0.00 0.00 0.00 2.57
2521 2843 9.227777 ACATACATAGTGCGTAGATAGTTCATA 57.772 33.333 0.00 0.00 0.00 2.15
2522 2844 9.709600 CATACATAGTGCGTAGATAGTTCATAG 57.290 37.037 0.00 0.00 0.00 2.23
2523 2845 6.613233 ACATAGTGCGTAGATAGTTCATAGC 58.387 40.000 0.00 0.00 0.00 2.97
2524 2846 4.506886 AGTGCGTAGATAGTTCATAGCC 57.493 45.455 0.00 0.00 0.00 3.93
2525 2847 4.145807 AGTGCGTAGATAGTTCATAGCCT 58.854 43.478 0.00 0.00 0.00 4.58
2526 2848 4.216687 AGTGCGTAGATAGTTCATAGCCTC 59.783 45.833 0.00 0.00 0.00 4.70
2527 2849 3.506455 TGCGTAGATAGTTCATAGCCTCC 59.494 47.826 0.00 0.00 0.00 4.30
2528 2850 3.759618 GCGTAGATAGTTCATAGCCTCCT 59.240 47.826 0.00 0.00 0.00 3.69
2529 2851 4.142556 GCGTAGATAGTTCATAGCCTCCTC 60.143 50.000 0.00 0.00 0.00 3.71
2530 2852 4.396790 CGTAGATAGTTCATAGCCTCCTCC 59.603 50.000 0.00 0.00 0.00 4.30
2531 2853 4.757997 AGATAGTTCATAGCCTCCTCCT 57.242 45.455 0.00 0.00 0.00 3.69
2532 2854 5.869540 AGATAGTTCATAGCCTCCTCCTA 57.130 43.478 0.00 0.00 0.00 2.94
2533 2855 6.220881 AGATAGTTCATAGCCTCCTCCTAA 57.779 41.667 0.00 0.00 0.00 2.69
2534 2856 6.252995 AGATAGTTCATAGCCTCCTCCTAAG 58.747 44.000 0.00 0.00 0.00 2.18
2535 2857 4.544564 AGTTCATAGCCTCCTCCTAAGA 57.455 45.455 0.00 0.00 0.00 2.10
2536 2858 5.086598 AGTTCATAGCCTCCTCCTAAGAT 57.913 43.478 0.00 0.00 0.00 2.40
2537 2859 6.220881 AGTTCATAGCCTCCTCCTAAGATA 57.779 41.667 0.00 0.00 0.00 1.98
2538 2860 6.252995 AGTTCATAGCCTCCTCCTAAGATAG 58.747 44.000 0.00 0.00 0.00 2.08
2540 2862 4.608473 TCATAGCCTCCTCCTAAGATAGGT 59.392 45.833 3.49 0.00 46.32 3.08
2541 2863 5.796399 TCATAGCCTCCTCCTAAGATAGGTA 59.204 44.000 3.49 0.00 46.32 3.08
2542 2864 6.277283 TCATAGCCTCCTCCTAAGATAGGTAA 59.723 42.308 3.49 0.00 46.32 2.85
2543 2865 5.420215 AGCCTCCTCCTAAGATAGGTAAA 57.580 43.478 3.49 0.00 46.32 2.01
2544 2866 5.789535 AGCCTCCTCCTAAGATAGGTAAAA 58.210 41.667 3.49 0.00 46.32 1.52
2545 2867 6.394747 AGCCTCCTCCTAAGATAGGTAAAAT 58.605 40.000 3.49 0.00 46.32 1.82
2546 2868 7.545546 AGCCTCCTCCTAAGATAGGTAAAATA 58.454 38.462 3.49 0.00 46.32 1.40
2547 2869 8.017251 AGCCTCCTCCTAAGATAGGTAAAATAA 58.983 37.037 3.49 0.00 46.32 1.40
2548 2870 8.095792 GCCTCCTCCTAAGATAGGTAAAATAAC 58.904 40.741 3.49 0.00 46.32 1.89
2549 2871 9.382307 CCTCCTCCTAAGATAGGTAAAATAACT 57.618 37.037 3.49 0.00 46.32 2.24
2558 2880 8.443953 AGATAGGTAAAATAACTACTCGTCGT 57.556 34.615 0.00 0.00 29.29 4.34
2559 2881 8.555361 AGATAGGTAAAATAACTACTCGTCGTC 58.445 37.037 0.00 0.00 29.29 4.20
2560 2882 5.884771 AGGTAAAATAACTACTCGTCGTCC 58.115 41.667 0.00 0.00 0.00 4.79
2561 2883 5.649831 AGGTAAAATAACTACTCGTCGTCCT 59.350 40.000 0.00 0.00 0.00 3.85
2562 2884 5.968261 GGTAAAATAACTACTCGTCGTCCTC 59.032 44.000 0.00 0.00 0.00 3.71
2563 2885 4.629251 AAATAACTACTCGTCGTCCTCC 57.371 45.455 0.00 0.00 0.00 4.30
2564 2886 3.557228 ATAACTACTCGTCGTCCTCCT 57.443 47.619 0.00 0.00 0.00 3.69
2565 2887 1.736612 AACTACTCGTCGTCCTCCTC 58.263 55.000 0.00 0.00 0.00 3.71
2566 2888 0.107752 ACTACTCGTCGTCCTCCTCC 60.108 60.000 0.00 0.00 0.00 4.30
2567 2889 0.107800 CTACTCGTCGTCCTCCTCCA 60.108 60.000 0.00 0.00 0.00 3.86
2568 2890 0.325933 TACTCGTCGTCCTCCTCCAA 59.674 55.000 0.00 0.00 0.00 3.53
2569 2891 1.242665 ACTCGTCGTCCTCCTCCAAC 61.243 60.000 0.00 0.00 0.00 3.77
2570 2892 0.961358 CTCGTCGTCCTCCTCCAACT 60.961 60.000 0.00 0.00 0.00 3.16
2571 2893 0.959372 TCGTCGTCCTCCTCCAACTC 60.959 60.000 0.00 0.00 0.00 3.01
2572 2894 1.507174 GTCGTCCTCCTCCAACTCG 59.493 63.158 0.00 0.00 0.00 4.18
2573 2895 1.677966 TCGTCCTCCTCCAACTCGG 60.678 63.158 0.00 0.00 0.00 4.63
2574 2896 1.677966 CGTCCTCCTCCAACTCGGA 60.678 63.158 0.00 0.00 43.61 4.55
2575 2897 1.891616 GTCCTCCTCCAACTCGGAC 59.108 63.158 0.00 0.00 39.64 4.79
2576 2898 0.612453 GTCCTCCTCCAACTCGGACT 60.612 60.000 0.00 0.00 39.64 3.85
2577 2899 0.323542 TCCTCCTCCAACTCGGACTC 60.324 60.000 0.00 0.00 39.64 3.36
2578 2900 1.324005 CCTCCTCCAACTCGGACTCC 61.324 65.000 0.00 0.00 39.64 3.85
2579 2901 0.612174 CTCCTCCAACTCGGACTCCA 60.612 60.000 0.00 0.00 39.64 3.86
2580 2902 0.898789 TCCTCCAACTCGGACTCCAC 60.899 60.000 0.00 0.00 39.64 4.02
2581 2903 1.592223 CTCCAACTCGGACTCCACC 59.408 63.158 0.00 0.00 39.64 4.61
2582 2904 0.900647 CTCCAACTCGGACTCCACCT 60.901 60.000 0.00 0.00 39.64 4.00
2583 2905 0.898789 TCCAACTCGGACTCCACCTC 60.899 60.000 0.00 0.00 39.64 3.85
2584 2906 1.213013 CAACTCGGACTCCACCTCG 59.787 63.158 0.00 0.00 0.00 4.63
2585 2907 1.977544 AACTCGGACTCCACCTCGG 60.978 63.158 0.00 0.00 0.00 4.63
2586 2908 3.827898 CTCGGACTCCACCTCGGC 61.828 72.222 0.00 0.00 33.14 5.54
2589 2911 3.148279 GGACTCCACCTCGGCGAT 61.148 66.667 11.27 0.00 33.14 4.58
2590 2912 2.105128 GACTCCACCTCGGCGATG 59.895 66.667 11.27 10.94 33.14 3.84
2591 2913 2.680352 ACTCCACCTCGGCGATGT 60.680 61.111 11.27 11.76 33.14 3.06
2592 2914 2.105128 CTCCACCTCGGCGATGTC 59.895 66.667 14.95 0.00 33.14 3.06
2593 2915 3.432051 CTCCACCTCGGCGATGTCC 62.432 68.421 14.95 0.00 33.14 4.02
2594 2916 3.461773 CCACCTCGGCGATGTCCT 61.462 66.667 14.95 0.00 0.00 3.85
2595 2917 2.105128 CACCTCGGCGATGTCCTC 59.895 66.667 14.95 0.00 0.00 3.71
2596 2918 3.148279 ACCTCGGCGATGTCCTCC 61.148 66.667 11.27 0.00 0.00 4.30
2597 2919 2.835431 CCTCGGCGATGTCCTCCT 60.835 66.667 11.27 0.00 0.00 3.69
2598 2920 2.725008 CTCGGCGATGTCCTCCTC 59.275 66.667 11.27 0.00 0.00 3.71
2599 2921 2.833582 TCGGCGATGTCCTCCTCC 60.834 66.667 4.99 0.00 0.00 4.30
2600 2922 4.271816 CGGCGATGTCCTCCTCCG 62.272 72.222 0.00 0.00 32.49 4.63
2601 2923 2.833582 GGCGATGTCCTCCTCCGA 60.834 66.667 0.00 0.00 0.00 4.55
2602 2924 2.413765 GCGATGTCCTCCTCCGAC 59.586 66.667 0.00 0.00 0.00 4.79
2603 2925 2.716244 CGATGTCCTCCTCCGACG 59.284 66.667 0.00 0.00 32.68 5.12
2604 2926 2.113433 CGATGTCCTCCTCCGACGT 61.113 63.158 0.00 0.00 32.68 4.34
2605 2927 1.728672 GATGTCCTCCTCCGACGTC 59.271 63.158 5.18 5.18 38.66 4.34
2606 2928 1.001269 ATGTCCTCCTCCGACGTCA 60.001 57.895 17.16 0.00 32.68 4.35
2607 2929 1.313812 ATGTCCTCCTCCGACGTCAC 61.314 60.000 17.16 3.88 32.68 3.67
2608 2930 1.970114 GTCCTCCTCCGACGTCACA 60.970 63.158 17.16 0.00 0.00 3.58
2609 2931 1.228337 TCCTCCTCCGACGTCACAA 60.228 57.895 17.16 0.00 0.00 3.33
2610 2932 0.611062 TCCTCCTCCGACGTCACAAT 60.611 55.000 17.16 0.00 0.00 2.71
2611 2933 0.458543 CCTCCTCCGACGTCACAATG 60.459 60.000 17.16 0.00 0.00 2.82
2612 2934 0.526211 CTCCTCCGACGTCACAATGA 59.474 55.000 17.16 4.14 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 40 3.455619 AACGTCTGCGAGCTTAAATTG 57.544 42.857 0.00 0.00 42.00 2.32
48 50 0.108520 GACCCCATAAACGTCTGCGA 60.109 55.000 0.00 0.00 42.00 5.10
54 56 2.793288 AAATCCGACCCCATAAACGT 57.207 45.000 0.00 0.00 0.00 3.99
60 62 1.920351 ACTTGGTAAATCCGACCCCAT 59.080 47.619 0.00 0.00 39.52 4.00
106 109 6.035435 GCATGAGTTAGCATCATATAGGTTCG 59.965 42.308 0.00 0.00 35.64 3.95
109 112 6.212187 TCTGCATGAGTTAGCATCATATAGGT 59.788 38.462 0.00 0.00 40.42 3.08
227 230 0.377203 CCTTGCTAAATTCGACCCGC 59.623 55.000 0.00 0.00 0.00 6.13
229 232 1.401905 CTGCCTTGCTAAATTCGACCC 59.598 52.381 0.00 0.00 0.00 4.46
271 274 8.308207 GGACTGATTCTAGAGTTCTGTTTTAGT 58.692 37.037 14.37 6.08 0.00 2.24
272 275 7.486551 CGGACTGATTCTAGAGTTCTGTTTTAG 59.513 40.741 14.37 3.79 0.00 1.85
273 276 7.039923 ACGGACTGATTCTAGAGTTCTGTTTTA 60.040 37.037 14.37 0.00 0.00 1.52
274 277 6.159988 CGGACTGATTCTAGAGTTCTGTTTT 58.840 40.000 14.37 0.00 0.00 2.43
275 278 5.244178 ACGGACTGATTCTAGAGTTCTGTTT 59.756 40.000 14.37 4.84 0.00 2.83
276 279 4.767928 ACGGACTGATTCTAGAGTTCTGTT 59.232 41.667 14.37 2.36 0.00 3.16
277 280 4.337145 ACGGACTGATTCTAGAGTTCTGT 58.663 43.478 13.56 13.56 0.00 3.41
278 281 4.638421 AGACGGACTGATTCTAGAGTTCTG 59.362 45.833 0.00 1.79 0.00 3.02
279 282 4.850680 AGACGGACTGATTCTAGAGTTCT 58.149 43.478 0.00 0.00 0.00 3.01
292 295 2.386661 ATGCTTAACCAGACGGACTG 57.613 50.000 0.31 0.31 45.36 3.51
293 296 2.615493 CCAATGCTTAACCAGACGGACT 60.615 50.000 0.00 0.00 35.59 3.85
294 297 1.737793 CCAATGCTTAACCAGACGGAC 59.262 52.381 0.00 0.00 35.59 4.79
295 298 1.339631 CCCAATGCTTAACCAGACGGA 60.340 52.381 0.00 0.00 35.59 4.69
296 299 1.094785 CCCAATGCTTAACCAGACGG 58.905 55.000 0.00 0.00 38.77 4.79
297 300 2.107950 TCCCAATGCTTAACCAGACG 57.892 50.000 0.00 0.00 0.00 4.18
298 301 2.164422 GCTTCCCAATGCTTAACCAGAC 59.836 50.000 0.00 0.00 0.00 3.51
299 302 2.041620 AGCTTCCCAATGCTTAACCAGA 59.958 45.455 0.00 0.00 35.86 3.86
300 303 2.165030 CAGCTTCCCAATGCTTAACCAG 59.835 50.000 0.00 0.00 37.44 4.00
301 304 2.170166 CAGCTTCCCAATGCTTAACCA 58.830 47.619 0.00 0.00 37.44 3.67
302 305 2.446435 TCAGCTTCCCAATGCTTAACC 58.554 47.619 0.00 0.00 37.44 2.85
303 306 4.276926 CCTATCAGCTTCCCAATGCTTAAC 59.723 45.833 0.00 0.00 37.44 2.01
304 307 4.079787 ACCTATCAGCTTCCCAATGCTTAA 60.080 41.667 0.00 0.00 37.44 1.85
305 308 3.459598 ACCTATCAGCTTCCCAATGCTTA 59.540 43.478 0.00 0.00 37.44 3.09
306 309 2.243221 ACCTATCAGCTTCCCAATGCTT 59.757 45.455 0.00 0.00 37.44 3.91
307 310 1.849039 ACCTATCAGCTTCCCAATGCT 59.151 47.619 0.00 0.00 40.54 3.79
308 311 2.225467 GACCTATCAGCTTCCCAATGC 58.775 52.381 0.00 0.00 0.00 3.56
309 312 2.487934 CGACCTATCAGCTTCCCAATG 58.512 52.381 0.00 0.00 0.00 2.82
310 313 1.202698 GCGACCTATCAGCTTCCCAAT 60.203 52.381 0.00 0.00 0.00 3.16
311 314 0.178068 GCGACCTATCAGCTTCCCAA 59.822 55.000 0.00 0.00 0.00 4.12
312 315 0.975556 TGCGACCTATCAGCTTCCCA 60.976 55.000 0.00 0.00 0.00 4.37
313 316 0.394565 ATGCGACCTATCAGCTTCCC 59.605 55.000 0.00 0.00 0.00 3.97
314 317 2.246719 AATGCGACCTATCAGCTTCC 57.753 50.000 0.00 0.00 0.00 3.46
315 318 5.931441 ATAAAATGCGACCTATCAGCTTC 57.069 39.130 0.00 0.00 0.00 3.86
316 319 6.699575 AAATAAAATGCGACCTATCAGCTT 57.300 33.333 0.00 0.00 0.00 3.74
317 320 7.801716 TTAAATAAAATGCGACCTATCAGCT 57.198 32.000 0.00 0.00 0.00 4.24
318 321 8.289618 TGATTAAATAAAATGCGACCTATCAGC 58.710 33.333 0.00 0.00 0.00 4.26
324 327 9.139174 CTGTTTTGATTAAATAAAATGCGACCT 57.861 29.630 0.00 0.00 0.00 3.85
325 328 8.379902 CCTGTTTTGATTAAATAAAATGCGACC 58.620 33.333 0.00 0.00 0.00 4.79
326 329 8.379902 CCCTGTTTTGATTAAATAAAATGCGAC 58.620 33.333 0.00 0.00 0.00 5.19
327 330 8.307483 TCCCTGTTTTGATTAAATAAAATGCGA 58.693 29.630 0.00 0.00 0.00 5.10
328 331 8.472683 TCCCTGTTTTGATTAAATAAAATGCG 57.527 30.769 4.27 0.00 0.00 4.73
437 440 9.046296 GGGATCAATATTAGCTAATACCGATTG 57.954 37.037 24.94 23.62 31.57 2.67
459 462 2.766651 TCGGCGGGCTTTAGGGAT 60.767 61.111 7.21 0.00 0.00 3.85
462 465 3.945304 AACGTCGGCGGGCTTTAGG 62.945 63.158 16.39 0.00 43.45 2.69
474 477 2.592897 CGGTCACTAATTGAGAACGTCG 59.407 50.000 0.00 0.00 40.64 5.12
480 483 2.415491 CGTGCTCGGTCACTAATTGAGA 60.415 50.000 0.00 0.00 33.71 3.27
485 488 1.174783 AGACGTGCTCGGTCACTAAT 58.825 50.000 13.32 0.00 41.85 1.73
493 496 1.659098 GGTCAAAATAGACGTGCTCGG 59.341 52.381 13.32 0.00 41.85 4.63
558 567 5.124138 ACACGCATTTGACCGGATAATTTAA 59.876 36.000 9.46 0.00 0.00 1.52
633 891 2.282783 GCCCAGCCGGACCATTTTT 61.283 57.895 5.05 0.00 0.00 1.94
636 894 4.431131 CAGCCCAGCCGGACCATT 62.431 66.667 5.05 0.00 0.00 3.16
646 904 1.303888 ACAACCTGATGCAGCCCAG 60.304 57.895 0.00 2.94 0.00 4.45
649 908 2.401766 CCGACAACCTGATGCAGCC 61.402 63.158 0.00 0.00 0.00 4.85
652 911 0.037326 GTCTCCGACAACCTGATGCA 60.037 55.000 0.00 0.00 32.09 3.96
666 925 0.471211 TATGGGGATGTCCGGTCTCC 60.471 60.000 0.00 0.92 36.73 3.71
670 929 2.131854 TCAAATATGGGGATGTCCGGT 58.868 47.619 0.00 0.00 36.71 5.28
702 961 1.530323 CGAACCTCCGGACCATTTTT 58.470 50.000 0.00 0.00 0.00 1.94
722 1003 4.224715 AGTAAAAGAAAAGCGGCTCAAC 57.775 40.909 1.45 0.00 0.00 3.18
728 1009 5.685954 GGACAGAAAAGTAAAAGAAAAGCGG 59.314 40.000 0.00 0.00 0.00 5.52
729 1010 5.395486 CGGACAGAAAAGTAAAAGAAAAGCG 59.605 40.000 0.00 0.00 0.00 4.68
730 1011 5.685954 CCGGACAGAAAAGTAAAAGAAAAGC 59.314 40.000 0.00 0.00 0.00 3.51
731 1012 6.206498 CCCGGACAGAAAAGTAAAAGAAAAG 58.794 40.000 0.73 0.00 0.00 2.27
736 1017 2.882137 TGCCCGGACAGAAAAGTAAAAG 59.118 45.455 0.73 0.00 0.00 2.27
753 1040 1.143073 AGACTATCCGGGAATTTGCCC 59.857 52.381 0.00 0.00 45.10 5.36
755 1042 3.194005 TCAGACTATCCGGGAATTTGC 57.806 47.619 0.00 0.00 0.00 3.68
759 1046 4.444876 CCAACAATCAGACTATCCGGGAAT 60.445 45.833 0.00 0.00 0.00 3.01
760 1047 3.118408 CCAACAATCAGACTATCCGGGAA 60.118 47.826 0.00 0.00 0.00 3.97
763 1050 3.118775 TGTCCAACAATCAGACTATCCGG 60.119 47.826 0.00 0.00 0.00 5.14
764 1051 4.123497 TGTCCAACAATCAGACTATCCG 57.877 45.455 0.00 0.00 0.00 4.18
766 1053 6.042777 TCGAATGTCCAACAATCAGACTATC 58.957 40.000 0.00 0.00 27.46 2.08
768 1055 5.047306 ACTCGAATGTCCAACAATCAGACTA 60.047 40.000 0.00 0.00 27.46 2.59
769 1056 4.248859 CTCGAATGTCCAACAATCAGACT 58.751 43.478 0.00 0.00 27.46 3.24
770 1057 3.997021 ACTCGAATGTCCAACAATCAGAC 59.003 43.478 0.00 0.00 27.46 3.51
772 1059 3.125829 CCACTCGAATGTCCAACAATCAG 59.874 47.826 0.00 0.00 27.46 2.90
773 1060 3.073678 CCACTCGAATGTCCAACAATCA 58.926 45.455 0.00 0.00 27.46 2.57
774 1061 3.074412 ACCACTCGAATGTCCAACAATC 58.926 45.455 0.00 0.00 0.00 2.67
775 1062 3.074412 GACCACTCGAATGTCCAACAAT 58.926 45.455 0.00 0.00 0.00 2.71
776 1063 2.489971 GACCACTCGAATGTCCAACAA 58.510 47.619 0.00 0.00 0.00 2.83
777 1064 1.270625 GGACCACTCGAATGTCCAACA 60.271 52.381 18.03 0.00 46.29 3.33
778 1065 1.439679 GGACCACTCGAATGTCCAAC 58.560 55.000 18.03 0.00 46.29 3.77
785 1072 2.559668 TCTACAAACGGACCACTCGAAT 59.440 45.455 0.00 0.00 0.00 3.34
788 1075 2.259618 CATCTACAAACGGACCACTCG 58.740 52.381 0.00 0.00 0.00 4.18
792 1079 1.609580 GCACCATCTACAAACGGACCA 60.610 52.381 0.00 0.00 0.00 4.02
949 1236 0.742990 TGTCCGGATGCGATGAAACC 60.743 55.000 7.81 0.00 0.00 3.27
957 1244 0.098728 GGAAATTGTGTCCGGATGCG 59.901 55.000 7.81 0.00 0.00 4.73
966 1253 2.379972 TCGGTTGTTGGGAAATTGTGT 58.620 42.857 0.00 0.00 0.00 3.72
1013 1302 6.607198 GGAGGAATGGAGGATCAATTAAACAA 59.393 38.462 0.00 0.00 39.34 2.83
1047 1341 3.625082 GATGGTTTGTTGGCGCCGG 62.625 63.158 23.90 0.00 0.00 6.13
1264 1558 3.066190 CCGTCGTCACCTGCCCTA 61.066 66.667 0.00 0.00 0.00 3.53
1491 1785 1.823470 TGCTGTTTCTTGCCTGCGT 60.823 52.632 0.00 0.00 0.00 5.24
1715 2015 3.673052 CGTATGCAAATCACCCACTTTGG 60.673 47.826 0.00 0.00 37.25 3.28
1738 2038 3.354948 ACTAAGCATCAACAGCATCCA 57.645 42.857 0.00 0.00 0.00 3.41
1858 2158 9.406828 GAAGGAGTAAATCATAAAACCAAACAC 57.593 33.333 0.00 0.00 0.00 3.32
1878 2178 3.521947 AGTATTTTCGGACGGAAGGAG 57.478 47.619 0.00 0.00 35.70 3.69
1880 2180 3.332034 ACAAGTATTTTCGGACGGAAGG 58.668 45.455 0.00 0.00 35.70 3.46
1881 2181 3.991773 TGACAAGTATTTTCGGACGGAAG 59.008 43.478 0.00 0.00 35.70 3.46
1882 2182 3.992643 TGACAAGTATTTTCGGACGGAA 58.007 40.909 0.00 0.00 0.00 4.30
1885 2185 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
1886 2186 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
1888 2188 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
1889 2189 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
1896 2196 8.906867 CCTATTGTATCCATTTTGATGACAAGT 58.093 33.333 0.00 0.00 37.32 3.16
1952 2252 9.643693 GTCACCAAAATGAATAAAATGAGATGT 57.356 29.630 0.00 0.00 0.00 3.06
1953 2253 9.642327 TGTCACCAAAATGAATAAAATGAGATG 57.358 29.630 0.00 0.00 0.00 2.90
1955 2255 9.695526 CTTGTCACCAAAATGAATAAAATGAGA 57.304 29.630 0.00 0.00 0.00 3.27
1956 2256 9.480053 ACTTGTCACCAAAATGAATAAAATGAG 57.520 29.630 0.00 0.00 0.00 2.90
1962 2262 9.921637 GGAAATACTTGTCACCAAAATGAATAA 57.078 29.630 0.00 0.00 0.00 1.40
1963 2263 8.240682 CGGAAATACTTGTCACCAAAATGAATA 58.759 33.333 0.00 0.00 0.00 1.75
1964 2264 7.090173 CGGAAATACTTGTCACCAAAATGAAT 58.910 34.615 0.00 0.00 0.00 2.57
1965 2265 6.442952 CGGAAATACTTGTCACCAAAATGAA 58.557 36.000 0.00 0.00 0.00 2.57
1966 2266 5.048364 CCGGAAATACTTGTCACCAAAATGA 60.048 40.000 0.00 0.00 0.00 2.57
1967 2267 5.048364 TCCGGAAATACTTGTCACCAAAATG 60.048 40.000 0.00 0.00 0.00 2.32
1968 2268 5.074115 TCCGGAAATACTTGTCACCAAAAT 58.926 37.500 0.00 0.00 0.00 1.82
1969 2269 4.462133 TCCGGAAATACTTGTCACCAAAA 58.538 39.130 0.00 0.00 0.00 2.44
1970 2270 4.088056 TCCGGAAATACTTGTCACCAAA 57.912 40.909 0.00 0.00 0.00 3.28
1971 2271 3.773418 TCCGGAAATACTTGTCACCAA 57.227 42.857 0.00 0.00 0.00 3.67
1972 2272 3.605634 CATCCGGAAATACTTGTCACCA 58.394 45.455 9.01 0.00 0.00 4.17
1973 2273 2.943033 CCATCCGGAAATACTTGTCACC 59.057 50.000 9.01 0.00 0.00 4.02
1974 2274 3.869065 TCCATCCGGAAATACTTGTCAC 58.131 45.455 9.01 0.00 38.83 3.67
1975 2275 3.118408 CCTCCATCCGGAAATACTTGTCA 60.118 47.826 9.01 0.00 42.21 3.58
1976 2276 3.134081 TCCTCCATCCGGAAATACTTGTC 59.866 47.826 9.01 0.00 42.21 3.18
1977 2277 3.112263 TCCTCCATCCGGAAATACTTGT 58.888 45.455 9.01 0.00 42.21 3.16
1978 2278 3.838244 TCCTCCATCCGGAAATACTTG 57.162 47.619 9.01 0.00 42.21 3.16
1979 2279 3.780850 ACTTCCTCCATCCGGAAATACTT 59.219 43.478 9.01 0.00 42.21 2.24
1980 2280 3.385115 ACTTCCTCCATCCGGAAATACT 58.615 45.455 9.01 0.00 42.21 2.12
1981 2281 3.840124 ACTTCCTCCATCCGGAAATAC 57.160 47.619 9.01 0.00 42.21 1.89
1982 2282 6.509523 AAATACTTCCTCCATCCGGAAATA 57.490 37.500 9.01 0.00 42.21 1.40
1983 2283 5.388599 AAATACTTCCTCCATCCGGAAAT 57.611 39.130 9.01 0.00 42.21 2.17
1984 2284 4.855298 AAATACTTCCTCCATCCGGAAA 57.145 40.909 9.01 0.00 42.21 3.13
1985 2285 4.018779 ACAAAATACTTCCTCCATCCGGAA 60.019 41.667 9.01 0.00 42.21 4.30
1986 2286 3.521937 ACAAAATACTTCCTCCATCCGGA 59.478 43.478 6.61 6.61 39.79 5.14
1987 2287 3.877508 GACAAAATACTTCCTCCATCCGG 59.122 47.826 0.00 0.00 0.00 5.14
1988 2288 4.513442 TGACAAAATACTTCCTCCATCCG 58.487 43.478 0.00 0.00 0.00 4.18
1989 2289 7.410120 AATTGACAAAATACTTCCTCCATCC 57.590 36.000 0.00 0.00 0.00 3.51
1992 2292 9.308000 ACAATAATTGACAAAATACTTCCTCCA 57.692 29.630 0.00 0.00 0.00 3.86
1993 2293 9.573133 CACAATAATTGACAAAATACTTCCTCC 57.427 33.333 0.00 0.00 0.00 4.30
2046 2346 1.326245 CTTAAATCAATCCGCGCACGA 59.674 47.619 8.75 1.54 43.93 4.35
2090 2390 6.697641 AGGTTCTAAGAATACAGGTTTCCA 57.302 37.500 0.00 0.00 0.00 3.53
2108 2408 4.236147 GAGACCTCGTCAAAAGTAGGTTC 58.764 47.826 0.00 0.00 42.40 3.62
2109 2409 3.640029 TGAGACCTCGTCAAAAGTAGGTT 59.360 43.478 0.00 0.00 42.40 3.50
2110 2410 3.228453 TGAGACCTCGTCAAAAGTAGGT 58.772 45.455 0.00 0.00 45.02 3.08
2156 2478 6.206498 TCGTGTCATTTGGTCTTCTATATCG 58.794 40.000 0.00 0.00 0.00 2.92
2157 2479 8.328864 GTTTCGTGTCATTTGGTCTTCTATATC 58.671 37.037 0.00 0.00 0.00 1.63
2158 2480 8.041323 AGTTTCGTGTCATTTGGTCTTCTATAT 58.959 33.333 0.00 0.00 0.00 0.86
2159 2481 7.383687 AGTTTCGTGTCATTTGGTCTTCTATA 58.616 34.615 0.00 0.00 0.00 1.31
2160 2482 6.231211 AGTTTCGTGTCATTTGGTCTTCTAT 58.769 36.000 0.00 0.00 0.00 1.98
2161 2483 5.607477 AGTTTCGTGTCATTTGGTCTTCTA 58.393 37.500 0.00 0.00 0.00 2.10
2162 2484 4.451900 AGTTTCGTGTCATTTGGTCTTCT 58.548 39.130 0.00 0.00 0.00 2.85
2163 2485 4.272504 TGAGTTTCGTGTCATTTGGTCTTC 59.727 41.667 0.00 0.00 0.00 2.87
2178 2500 7.359595 TCCATAAAAAGAACACATGAGTTTCG 58.640 34.615 9.96 0.00 0.00 3.46
2193 2515 7.962934 TCGCGTTAATGAAATCCATAAAAAG 57.037 32.000 5.77 0.00 34.45 2.27
2214 2536 8.619146 TCTAACAATTTGATGATTCATTTCGC 57.381 30.769 2.79 0.00 0.00 4.70
2216 2538 9.577110 TGCTCTAACAATTTGATGATTCATTTC 57.423 29.630 2.79 0.00 0.00 2.17
2220 2542 8.515695 AGATGCTCTAACAATTTGATGATTCA 57.484 30.769 2.79 0.00 0.00 2.57
2232 2554 3.753272 GCCAGTTGAAGATGCTCTAACAA 59.247 43.478 0.00 0.00 0.00 2.83
2233 2555 3.244526 TGCCAGTTGAAGATGCTCTAACA 60.245 43.478 0.00 0.00 0.00 2.41
2234 2556 3.338249 TGCCAGTTGAAGATGCTCTAAC 58.662 45.455 0.00 0.00 0.00 2.34
2235 2557 3.701205 TGCCAGTTGAAGATGCTCTAA 57.299 42.857 0.00 0.00 0.00 2.10
2236 2558 3.538591 CATGCCAGTTGAAGATGCTCTA 58.461 45.455 0.00 0.00 0.00 2.43
2237 2559 2.366533 CATGCCAGTTGAAGATGCTCT 58.633 47.619 0.00 0.00 0.00 4.09
2238 2560 1.202268 GCATGCCAGTTGAAGATGCTC 60.202 52.381 6.36 0.00 37.13 4.26
2239 2561 0.815734 GCATGCCAGTTGAAGATGCT 59.184 50.000 6.36 0.00 37.13 3.79
2240 2562 0.528924 TGCATGCCAGTTGAAGATGC 59.471 50.000 16.68 0.00 39.90 3.91
2241 2563 2.602878 GTTGCATGCCAGTTGAAGATG 58.397 47.619 16.68 0.00 0.00 2.90
2242 2564 1.200716 CGTTGCATGCCAGTTGAAGAT 59.799 47.619 16.68 0.00 0.00 2.40
2243 2565 0.592637 CGTTGCATGCCAGTTGAAGA 59.407 50.000 16.68 0.00 0.00 2.87
2244 2566 1.005294 GCGTTGCATGCCAGTTGAAG 61.005 55.000 16.68 0.00 0.00 3.02
2245 2567 1.007502 GCGTTGCATGCCAGTTGAA 60.008 52.632 16.68 0.00 0.00 2.69
2246 2568 2.644418 GCGTTGCATGCCAGTTGA 59.356 55.556 16.68 0.00 0.00 3.18
2247 2569 2.801996 CGCGTTGCATGCCAGTTG 60.802 61.111 16.68 1.56 0.00 3.16
2248 2570 4.705519 GCGCGTTGCATGCCAGTT 62.706 61.111 16.68 0.00 45.45 3.16
2258 2580 4.896028 TTTGTGTGCCGCGCGTTG 62.896 61.111 29.95 15.79 0.00 4.10
2259 2581 3.685214 TTTTTGTGTGCCGCGCGTT 62.685 52.632 29.95 0.00 0.00 4.84
2260 2582 4.180946 TTTTTGTGTGCCGCGCGT 62.181 55.556 29.95 0.00 0.00 6.01
2274 2596 1.668628 CGGCGCTGTAAATGCCTTTTT 60.669 47.619 8.45 0.00 46.67 1.94
2275 2597 0.109319 CGGCGCTGTAAATGCCTTTT 60.109 50.000 8.45 0.00 46.67 2.27
2276 2598 1.241315 ACGGCGCTGTAAATGCCTTT 61.241 50.000 22.96 0.00 46.67 3.11
2277 2599 1.241315 AACGGCGCTGTAAATGCCTT 61.241 50.000 24.63 0.18 46.67 4.35
2278 2600 1.241315 AAACGGCGCTGTAAATGCCT 61.241 50.000 24.63 1.08 46.67 4.75
2279 2601 0.448593 TAAACGGCGCTGTAAATGCC 59.551 50.000 24.63 0.00 45.39 4.40
2280 2602 1.135916 TGTAAACGGCGCTGTAAATGC 60.136 47.619 24.63 15.57 0.00 3.56
2281 2603 2.884663 TGTAAACGGCGCTGTAAATG 57.115 45.000 24.63 0.00 0.00 2.32
2282 2604 3.004171 TCATGTAAACGGCGCTGTAAAT 58.996 40.909 24.63 14.50 0.00 1.40
2283 2605 2.413796 CTCATGTAAACGGCGCTGTAAA 59.586 45.455 24.63 11.11 0.00 2.01
2284 2606 1.996898 CTCATGTAAACGGCGCTGTAA 59.003 47.619 24.63 11.52 0.00 2.41
2285 2607 1.067425 ACTCATGTAAACGGCGCTGTA 60.067 47.619 24.63 7.25 0.00 2.74
2286 2608 0.320421 ACTCATGTAAACGGCGCTGT 60.320 50.000 18.16 18.16 0.00 4.40
2287 2609 0.796312 AACTCATGTAAACGGCGCTG 59.204 50.000 16.39 16.39 0.00 5.18
2288 2610 1.519408 AAACTCATGTAAACGGCGCT 58.481 45.000 6.90 0.00 0.00 5.92
2289 2611 2.325509 AAAACTCATGTAAACGGCGC 57.674 45.000 6.90 0.00 0.00 6.53
2290 2612 2.403698 GCAAAAACTCATGTAAACGGCG 59.596 45.455 4.80 4.80 0.00 6.46
2291 2613 3.181575 GTGCAAAAACTCATGTAAACGGC 59.818 43.478 0.00 0.00 0.00 5.68
2292 2614 3.420576 CGTGCAAAAACTCATGTAAACGG 59.579 43.478 0.00 0.00 0.00 4.44
2293 2615 3.121828 GCGTGCAAAAACTCATGTAAACG 60.122 43.478 0.00 0.00 0.00 3.60
2294 2616 3.181575 GGCGTGCAAAAACTCATGTAAAC 59.818 43.478 0.00 0.00 0.00 2.01
2295 2617 3.376540 GGCGTGCAAAAACTCATGTAAA 58.623 40.909 0.00 0.00 0.00 2.01
2296 2618 2.603412 CGGCGTGCAAAAACTCATGTAA 60.603 45.455 0.00 0.00 0.00 2.41
2297 2619 1.069568 CGGCGTGCAAAAACTCATGTA 60.070 47.619 0.00 0.00 0.00 2.29
2298 2620 0.317770 CGGCGTGCAAAAACTCATGT 60.318 50.000 0.00 0.00 0.00 3.21
2299 2621 1.608093 GCGGCGTGCAAAAACTCATG 61.608 55.000 9.37 0.00 45.45 3.07
2300 2622 1.371635 GCGGCGTGCAAAAACTCAT 60.372 52.632 9.37 0.00 45.45 2.90
2301 2623 2.025441 GCGGCGTGCAAAAACTCA 59.975 55.556 9.37 0.00 45.45 3.41
2335 2657 2.465210 GCTCTATTTTGCAGCGGAAG 57.535 50.000 0.00 0.00 0.00 3.46
2340 2662 1.936398 GCGCGCTCTATTTTGCAGC 60.936 57.895 26.67 0.00 0.00 5.25
2341 2663 0.179192 TTGCGCGCTCTATTTTGCAG 60.179 50.000 33.29 0.00 33.41 4.41
2342 2664 0.179192 CTTGCGCGCTCTATTTTGCA 60.179 50.000 33.29 4.14 0.00 4.08
2343 2665 1.466773 GCTTGCGCGCTCTATTTTGC 61.467 55.000 33.29 18.66 0.00 3.68
2344 2666 0.863119 GGCTTGCGCGCTCTATTTTG 60.863 55.000 33.29 13.25 36.88 2.44
2345 2667 1.429423 GGCTTGCGCGCTCTATTTT 59.571 52.632 33.29 0.00 36.88 1.82
2346 2668 2.813179 CGGCTTGCGCGCTCTATTT 61.813 57.895 33.29 0.00 36.88 1.40
2347 2669 3.264897 CGGCTTGCGCGCTCTATT 61.265 61.111 33.29 0.00 36.88 1.73
2358 2680 3.123620 GTCTGCTGGAGCGGCTTG 61.124 66.667 2.97 0.00 46.62 4.01
2359 2681 4.749310 CGTCTGCTGGAGCGGCTT 62.749 66.667 2.97 0.00 46.62 4.35
2364 2686 2.407846 TATAGCGCGTCTGCTGGAGC 62.408 60.000 8.43 0.00 46.70 4.70
2365 2687 0.242286 ATATAGCGCGTCTGCTGGAG 59.758 55.000 8.43 0.00 46.70 3.86
2366 2688 0.673985 AATATAGCGCGTCTGCTGGA 59.326 50.000 8.43 0.00 46.70 3.86
2367 2689 1.502231 AAATATAGCGCGTCTGCTGG 58.498 50.000 8.43 0.00 46.70 4.85
2368 2690 4.623167 AGAATAAATATAGCGCGTCTGCTG 59.377 41.667 8.43 0.00 46.70 4.41
2370 2692 5.517037 AAGAATAAATATAGCGCGTCTGC 57.483 39.130 8.43 0.00 37.91 4.26
2396 2718 9.741647 CCTATATGTGTATCGAGTCGTAGTATA 57.258 37.037 13.12 0.00 0.00 1.47
2397 2719 7.224362 GCCTATATGTGTATCGAGTCGTAGTAT 59.776 40.741 13.12 0.79 0.00 2.12
2398 2720 6.533012 GCCTATATGTGTATCGAGTCGTAGTA 59.467 42.308 13.12 1.91 0.00 1.82
2399 2721 5.350914 GCCTATATGTGTATCGAGTCGTAGT 59.649 44.000 13.12 2.89 0.00 2.73
2400 2722 5.350640 TGCCTATATGTGTATCGAGTCGTAG 59.649 44.000 13.12 3.43 0.00 3.51
2401 2723 5.240121 TGCCTATATGTGTATCGAGTCGTA 58.760 41.667 13.12 1.63 0.00 3.43
2402 2724 4.070009 TGCCTATATGTGTATCGAGTCGT 58.930 43.478 13.12 2.64 0.00 4.34
2403 2725 4.680171 TGCCTATATGTGTATCGAGTCG 57.320 45.455 6.09 6.09 0.00 4.18
2404 2726 7.555306 TCTATGCCTATATGTGTATCGAGTC 57.445 40.000 0.00 0.00 0.00 3.36
2405 2727 9.278978 CTATCTATGCCTATATGTGTATCGAGT 57.721 37.037 0.00 0.00 0.00 4.18
2406 2728 9.495572 TCTATCTATGCCTATATGTGTATCGAG 57.504 37.037 0.00 0.00 0.00 4.04
2486 2808 9.758651 TCTACGCACTATGTATGTATCATTTTT 57.241 29.630 0.00 0.00 0.00 1.94
2487 2809 9.929180 ATCTACGCACTATGTATGTATCATTTT 57.071 29.630 0.00 0.00 0.00 1.82
2490 2812 9.397280 ACTATCTACGCACTATGTATGTATCAT 57.603 33.333 0.00 0.00 0.00 2.45
2491 2813 8.788325 ACTATCTACGCACTATGTATGTATCA 57.212 34.615 0.00 0.00 0.00 2.15
2492 2814 9.705471 GAACTATCTACGCACTATGTATGTATC 57.295 37.037 0.00 0.00 0.00 2.24
2493 2815 9.227777 TGAACTATCTACGCACTATGTATGTAT 57.772 33.333 0.00 0.00 0.00 2.29
2494 2816 8.611654 TGAACTATCTACGCACTATGTATGTA 57.388 34.615 0.00 0.00 0.00 2.29
2495 2817 7.506328 TGAACTATCTACGCACTATGTATGT 57.494 36.000 0.00 0.00 0.00 2.29
2496 2818 9.709600 CTATGAACTATCTACGCACTATGTATG 57.290 37.037 0.00 0.00 0.00 2.39
2497 2819 8.399425 GCTATGAACTATCTACGCACTATGTAT 58.601 37.037 0.00 0.00 0.00 2.29
2498 2820 7.148289 GGCTATGAACTATCTACGCACTATGTA 60.148 40.741 0.00 0.00 0.00 2.29
2499 2821 6.349445 GGCTATGAACTATCTACGCACTATGT 60.349 42.308 0.00 0.00 0.00 2.29
2500 2822 6.030849 GGCTATGAACTATCTACGCACTATG 58.969 44.000 0.00 0.00 0.00 2.23
2501 2823 5.946972 AGGCTATGAACTATCTACGCACTAT 59.053 40.000 0.00 0.00 0.00 2.12
2502 2824 5.314529 AGGCTATGAACTATCTACGCACTA 58.685 41.667 0.00 0.00 0.00 2.74
2503 2825 4.145807 AGGCTATGAACTATCTACGCACT 58.854 43.478 0.00 0.00 0.00 4.40
2504 2826 4.477780 GAGGCTATGAACTATCTACGCAC 58.522 47.826 0.00 0.00 0.00 5.34
2505 2827 3.506455 GGAGGCTATGAACTATCTACGCA 59.494 47.826 0.00 0.00 0.00 5.24
2506 2828 3.759618 AGGAGGCTATGAACTATCTACGC 59.240 47.826 0.00 0.00 0.00 4.42
2507 2829 4.396790 GGAGGAGGCTATGAACTATCTACG 59.603 50.000 0.00 0.00 0.00 3.51
2508 2830 5.576128 AGGAGGAGGCTATGAACTATCTAC 58.424 45.833 0.00 0.00 0.00 2.59
2509 2831 5.869540 AGGAGGAGGCTATGAACTATCTA 57.130 43.478 0.00 0.00 0.00 1.98
2510 2832 4.757997 AGGAGGAGGCTATGAACTATCT 57.242 45.455 0.00 0.00 0.00 1.98
2511 2833 6.249951 TCTTAGGAGGAGGCTATGAACTATC 58.750 44.000 0.00 0.00 0.00 2.08
2512 2834 6.220881 TCTTAGGAGGAGGCTATGAACTAT 57.779 41.667 0.00 0.00 0.00 2.12
2513 2835 5.664815 TCTTAGGAGGAGGCTATGAACTA 57.335 43.478 0.00 0.00 0.00 2.24
2514 2836 4.544564 TCTTAGGAGGAGGCTATGAACT 57.455 45.455 0.00 0.00 0.00 3.01
2515 2837 6.524101 CTATCTTAGGAGGAGGCTATGAAC 57.476 45.833 0.00 0.00 0.00 3.18
2532 2854 8.897752 ACGACGAGTAGTTATTTTACCTATCTT 58.102 33.333 0.00 0.00 0.00 2.40
2533 2855 8.443953 ACGACGAGTAGTTATTTTACCTATCT 57.556 34.615 0.00 0.00 0.00 1.98
2534 2856 7.800847 GGACGACGAGTAGTTATTTTACCTATC 59.199 40.741 0.00 0.00 0.00 2.08
2535 2857 7.500559 AGGACGACGAGTAGTTATTTTACCTAT 59.499 37.037 0.00 0.00 0.00 2.57
2536 2858 6.823689 AGGACGACGAGTAGTTATTTTACCTA 59.176 38.462 0.00 0.00 0.00 3.08
2537 2859 5.649831 AGGACGACGAGTAGTTATTTTACCT 59.350 40.000 0.00 0.00 0.00 3.08
2538 2860 5.884771 AGGACGACGAGTAGTTATTTTACC 58.115 41.667 0.00 0.00 0.00 2.85
2539 2861 5.968261 GGAGGACGACGAGTAGTTATTTTAC 59.032 44.000 0.00 0.00 0.00 2.01
2540 2862 5.882557 AGGAGGACGACGAGTAGTTATTTTA 59.117 40.000 0.00 0.00 0.00 1.52
2541 2863 4.704057 AGGAGGACGACGAGTAGTTATTTT 59.296 41.667 0.00 0.00 0.00 1.82
2542 2864 4.268359 AGGAGGACGACGAGTAGTTATTT 58.732 43.478 0.00 0.00 0.00 1.40
2543 2865 3.876320 GAGGAGGACGACGAGTAGTTATT 59.124 47.826 0.00 0.00 0.00 1.40
2544 2866 3.465871 GAGGAGGACGACGAGTAGTTAT 58.534 50.000 0.00 0.00 0.00 1.89
2545 2867 2.419297 GGAGGAGGACGACGAGTAGTTA 60.419 54.545 0.00 0.00 0.00 2.24
2546 2868 1.678425 GGAGGAGGACGACGAGTAGTT 60.678 57.143 0.00 0.00 0.00 2.24
2547 2869 0.107752 GGAGGAGGACGACGAGTAGT 60.108 60.000 0.00 0.00 0.00 2.73
2548 2870 0.107800 TGGAGGAGGACGACGAGTAG 60.108 60.000 0.00 0.00 0.00 2.57
2549 2871 0.325933 TTGGAGGAGGACGACGAGTA 59.674 55.000 0.00 0.00 0.00 2.59
2550 2872 1.074423 TTGGAGGAGGACGACGAGT 59.926 57.895 0.00 0.00 0.00 4.18
2551 2873 0.961358 AGTTGGAGGAGGACGACGAG 60.961 60.000 0.00 0.00 0.00 4.18
2552 2874 0.959372 GAGTTGGAGGAGGACGACGA 60.959 60.000 0.00 0.00 0.00 4.20
2553 2875 1.507174 GAGTTGGAGGAGGACGACG 59.493 63.158 0.00 0.00 0.00 5.12
2554 2876 1.507174 CGAGTTGGAGGAGGACGAC 59.493 63.158 0.00 0.00 0.00 4.34
2555 2877 1.677966 CCGAGTTGGAGGAGGACGA 60.678 63.158 0.00 0.00 42.00 4.20
2556 2878 1.677966 TCCGAGTTGGAGGAGGACG 60.678 63.158 0.00 0.00 43.74 4.79
2557 2879 4.436368 TCCGAGTTGGAGGAGGAC 57.564 61.111 0.00 0.00 43.74 3.85
2565 2887 1.592223 GAGGTGGAGTCCGAGTTGG 59.408 63.158 4.30 0.00 40.09 3.77
2566 2888 1.213013 CGAGGTGGAGTCCGAGTTG 59.787 63.158 4.30 0.00 0.00 3.16
2567 2889 1.977544 CCGAGGTGGAGTCCGAGTT 60.978 63.158 4.30 0.00 42.00 3.01
2568 2890 2.361357 CCGAGGTGGAGTCCGAGT 60.361 66.667 4.30 0.00 42.00 4.18
2569 2891 3.827898 GCCGAGGTGGAGTCCGAG 61.828 72.222 4.30 0.00 42.00 4.63
2572 2894 3.148279 ATCGCCGAGGTGGAGTCC 61.148 66.667 0.73 0.73 42.00 3.85
2573 2895 2.105128 CATCGCCGAGGTGGAGTC 59.895 66.667 2.57 0.00 42.00 3.36
2574 2896 2.680352 ACATCGCCGAGGTGGAGT 60.680 61.111 2.59 0.00 42.00 3.85
2575 2897 2.105128 GACATCGCCGAGGTGGAG 59.895 66.667 9.93 0.00 42.00 3.86
2576 2898 3.458163 GGACATCGCCGAGGTGGA 61.458 66.667 9.93 0.00 42.00 4.02
2577 2899 3.432051 GAGGACATCGCCGAGGTGG 62.432 68.421 9.93 0.00 42.50 4.61
2578 2900 2.105128 GAGGACATCGCCGAGGTG 59.895 66.667 9.93 0.00 36.90 4.00
2579 2901 3.148279 GGAGGACATCGCCGAGGT 61.148 66.667 3.19 3.19 0.00 3.85
2580 2902 2.835431 AGGAGGACATCGCCGAGG 60.835 66.667 0.00 0.00 40.51 4.63
2581 2903 2.725008 GAGGAGGACATCGCCGAG 59.275 66.667 0.00 0.00 40.51 4.63
2582 2904 2.833582 GGAGGAGGACATCGCCGA 60.834 66.667 0.00 0.00 40.51 5.54
2583 2905 4.271816 CGGAGGAGGACATCGCCG 62.272 72.222 5.80 5.80 40.51 6.46
2584 2906 2.833582 TCGGAGGAGGACATCGCC 60.834 66.667 0.00 0.00 35.38 5.54
2585 2907 2.413765 GTCGGAGGAGGACATCGC 59.586 66.667 0.00 0.00 34.56 4.58
2586 2908 2.049475 GACGTCGGAGGAGGACATCG 62.049 65.000 0.00 0.00 34.04 3.84
2587 2909 1.030488 TGACGTCGGAGGAGGACATC 61.030 60.000 11.62 0.00 34.04 3.06
2588 2910 1.001269 TGACGTCGGAGGAGGACAT 60.001 57.895 11.62 0.00 34.04 3.06
2589 2911 1.970114 GTGACGTCGGAGGAGGACA 60.970 63.158 11.62 0.00 34.04 4.02
2590 2912 1.521450 TTGTGACGTCGGAGGAGGAC 61.521 60.000 11.62 1.10 0.00 3.85
2591 2913 0.611062 ATTGTGACGTCGGAGGAGGA 60.611 55.000 11.62 0.00 0.00 3.71
2592 2914 0.458543 CATTGTGACGTCGGAGGAGG 60.459 60.000 11.62 0.00 0.00 4.30
2593 2915 0.526211 TCATTGTGACGTCGGAGGAG 59.474 55.000 11.62 0.00 0.00 3.69
2594 2916 2.648593 TCATTGTGACGTCGGAGGA 58.351 52.632 11.62 3.54 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.