Multiple sequence alignment - TraesCS3B01G232200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G232200 chr3B 100.000 3190 0 0 1 3190 354432349 354429160 0.000000e+00 5891
1 TraesCS3B01G232200 chr3A 92.914 1496 56 19 651 2129 730693560 730692098 0.000000e+00 2130
2 TraesCS3B01G232200 chr3A 93.960 149 8 1 2138 2286 730692060 730691913 1.150000e-54 224
3 TraesCS3B01G232200 chr3A 97.436 117 3 0 2286 2402 730689807 730689691 1.940000e-47 200
4 TraesCS3B01G232200 chr1A 94.578 793 40 3 2400 3190 165557049 165557840 0.000000e+00 1223
5 TraesCS3B01G232200 chr1A 95.238 672 30 2 2520 3190 185524185 185524855 0.000000e+00 1062
6 TraesCS3B01G232200 chr1A 93.610 626 35 2 1 626 185520975 185521595 0.000000e+00 929
7 TraesCS3B01G232200 chr1A 93.291 626 35 2 1 626 165556442 165557060 0.000000e+00 917
8 TraesCS3B01G232200 chr1A 86.235 603 64 17 2594 3186 333776875 333776282 1.250000e-178 636
9 TraesCS3B01G232200 chr1A 86.047 602 67 15 2594 3186 344250681 344250088 5.810000e-177 630
10 TraesCS3B01G232200 chr1A 93.496 123 7 1 2400 2521 185521584 185521706 7.030000e-42 182
11 TraesCS3B01G232200 chr5D 87.333 750 68 16 1234 1974 486788322 486787591 0.000000e+00 833
12 TraesCS3B01G232200 chr5D 85.202 446 33 18 1989 2404 486787606 486787164 8.180000e-116 427
13 TraesCS3B01G232200 chr6A 84.191 797 107 16 2404 3187 128033072 128032282 0.000000e+00 756
14 TraesCS3B01G232200 chr5A 83.333 798 111 19 2404 3187 157236624 157235835 0.000000e+00 717
15 TraesCS3B01G232200 chr5A 82.811 797 118 16 2404 3187 156153049 156153839 0.000000e+00 695
16 TraesCS3B01G232200 chr5A 86.424 604 66 14 2593 3187 85675921 85675325 0.000000e+00 647
17 TraesCS3B01G232200 chr5A 83.191 470 64 10 165 627 88842698 88843159 1.770000e-112 416
18 TraesCS3B01G232200 chr4D 83.690 607 88 10 2593 3190 190841961 190841357 2.150000e-156 562
19 TraesCS3B01G232200 chr1D 83.392 566 79 7 65 627 268097458 268098011 7.890000e-141 510
20 TraesCS3B01G232200 chr7B 82.771 563 80 9 68 627 471790505 471789957 1.330000e-133 486
21 TraesCS3B01G232200 chr5B 84.836 244 31 3 384 627 238660115 238659878 1.140000e-59 241
22 TraesCS3B01G232200 chr5B 84.836 244 31 4 384 627 240915886 240915649 1.140000e-59 241
23 TraesCS3B01G232200 chr5B 84.426 244 32 3 384 627 235580189 235579952 5.320000e-58 235
24 TraesCS3B01G232200 chr5B 84.426 244 32 3 384 627 239039378 239039615 5.320000e-58 235


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G232200 chr3B 354429160 354432349 3189 True 5891.000000 5891 100.000000 1 3190 1 chr3B.!!$R1 3189
1 TraesCS3B01G232200 chr3A 730689691 730693560 3869 True 851.333333 2130 94.770000 651 2402 3 chr3A.!!$R1 1751
2 TraesCS3B01G232200 chr1A 165556442 165557840 1398 False 1070.000000 1223 93.934500 1 3190 2 chr1A.!!$F1 3189
3 TraesCS3B01G232200 chr1A 185520975 185524855 3880 False 724.333333 1062 94.114667 1 3190 3 chr1A.!!$F2 3189
4 TraesCS3B01G232200 chr1A 333776282 333776875 593 True 636.000000 636 86.235000 2594 3186 1 chr1A.!!$R1 592
5 TraesCS3B01G232200 chr1A 344250088 344250681 593 True 630.000000 630 86.047000 2594 3186 1 chr1A.!!$R2 592
6 TraesCS3B01G232200 chr5D 486787164 486788322 1158 True 630.000000 833 86.267500 1234 2404 2 chr5D.!!$R1 1170
7 TraesCS3B01G232200 chr6A 128032282 128033072 790 True 756.000000 756 84.191000 2404 3187 1 chr6A.!!$R1 783
8 TraesCS3B01G232200 chr5A 157235835 157236624 789 True 717.000000 717 83.333000 2404 3187 1 chr5A.!!$R2 783
9 TraesCS3B01G232200 chr5A 156153049 156153839 790 False 695.000000 695 82.811000 2404 3187 1 chr5A.!!$F2 783
10 TraesCS3B01G232200 chr5A 85675325 85675921 596 True 647.000000 647 86.424000 2593 3187 1 chr5A.!!$R1 594
11 TraesCS3B01G232200 chr4D 190841357 190841961 604 True 562.000000 562 83.690000 2593 3190 1 chr4D.!!$R1 597
12 TraesCS3B01G232200 chr1D 268097458 268098011 553 False 510.000000 510 83.392000 65 627 1 chr1D.!!$F1 562
13 TraesCS3B01G232200 chr7B 471789957 471790505 548 True 486.000000 486 82.771000 68 627 1 chr7B.!!$R1 559

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
958 975 0.17576 TGTTCATACTCTCCGGCAGC 59.824 55.0 0.0 0.0 0.0 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2194 2256 0.034089 CATGTTTCCCCTCTCCCACC 60.034 60.0 0.0 0.0 0.0 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
190 193 9.326413 GCAGTATATACAACATCTTTGTAAGGT 57.674 33.333 15.18 0.00 38.26 3.50
295 303 6.585695 TCTTCTTGAGTCGGTATTTACTGT 57.414 37.500 0.00 0.00 34.25 3.55
386 394 0.879400 CACCGCATGGATCTCTCAGC 60.879 60.000 0.00 0.00 39.21 4.26
445 453 1.745489 GACGAGATTGGTGGTGCCC 60.745 63.158 0.00 0.00 36.04 5.36
539 547 1.103803 TCGATCAGTGCACCTACTCC 58.896 55.000 14.63 0.00 0.00 3.85
591 599 0.250295 TCAGTGGCTTTGAACCTCGG 60.250 55.000 0.00 0.00 0.00 4.63
627 635 1.068895 TGCAAAGCCTGTCATGTTTGG 59.931 47.619 6.41 2.39 31.77 3.28
628 636 1.606224 GCAAAGCCTGTCATGTTTGGG 60.606 52.381 6.41 0.91 31.77 4.12
629 637 1.962807 CAAAGCCTGTCATGTTTGGGA 59.037 47.619 0.00 0.00 0.00 4.37
630 638 1.915141 AAGCCTGTCATGTTTGGGAG 58.085 50.000 0.00 0.00 0.00 4.30
631 639 0.773644 AGCCTGTCATGTTTGGGAGT 59.226 50.000 0.00 0.00 0.00 3.85
632 640 0.883833 GCCTGTCATGTTTGGGAGTG 59.116 55.000 0.00 0.00 0.00 3.51
633 641 1.538047 CCTGTCATGTTTGGGAGTGG 58.462 55.000 0.00 0.00 0.00 4.00
634 642 0.883833 CTGTCATGTTTGGGAGTGGC 59.116 55.000 0.00 0.00 0.00 5.01
635 643 0.888736 TGTCATGTTTGGGAGTGGCG 60.889 55.000 0.00 0.00 0.00 5.69
636 644 0.605319 GTCATGTTTGGGAGTGGCGA 60.605 55.000 0.00 0.00 0.00 5.54
637 645 0.327924 TCATGTTTGGGAGTGGCGAT 59.672 50.000 0.00 0.00 0.00 4.58
638 646 1.176527 CATGTTTGGGAGTGGCGATT 58.823 50.000 0.00 0.00 0.00 3.34
639 647 1.545582 CATGTTTGGGAGTGGCGATTT 59.454 47.619 0.00 0.00 0.00 2.17
640 648 0.958091 TGTTTGGGAGTGGCGATTTG 59.042 50.000 0.00 0.00 0.00 2.32
641 649 0.243636 GTTTGGGAGTGGCGATTTGG 59.756 55.000 0.00 0.00 0.00 3.28
642 650 1.531739 TTTGGGAGTGGCGATTTGGC 61.532 55.000 0.00 0.00 45.12 4.52
643 651 2.044946 GGGAGTGGCGATTTGGCT 60.045 61.111 0.00 0.00 45.14 4.75
644 652 2.115291 GGGAGTGGCGATTTGGCTC 61.115 63.158 0.00 0.00 45.14 4.70
645 653 2.115291 GGAGTGGCGATTTGGCTCC 61.115 63.158 0.00 0.00 45.14 4.70
646 654 2.044946 AGTGGCGATTTGGCTCCC 60.045 61.111 0.00 0.00 45.14 4.30
647 655 3.508840 GTGGCGATTTGGCTCCCG 61.509 66.667 0.00 0.00 45.14 5.14
648 656 3.711814 TGGCGATTTGGCTCCCGA 61.712 61.111 0.00 0.00 45.14 5.14
649 657 2.897350 GGCGATTTGGCTCCCGAG 60.897 66.667 0.00 0.00 40.72 4.63
762 779 2.506438 GCGGTACAGAGTCCACGC 60.506 66.667 0.00 0.00 40.19 5.34
798 815 3.338275 TTCCCGATTTCTGCCCCCG 62.338 63.158 0.00 0.00 0.00 5.73
801 818 2.584608 CGATTTCTGCCCCCGACT 59.415 61.111 0.00 0.00 0.00 4.18
819 836 1.212935 ACTGAGCTCTCCTCTCTCTCC 59.787 57.143 16.19 0.00 41.35 3.71
911 928 3.565961 TTGGCCATGCAGCTCGGAA 62.566 57.895 6.09 0.00 0.00 4.30
951 968 4.193826 TGCTCTGGTTGTTCATACTCTC 57.806 45.455 0.00 0.00 0.00 3.20
952 969 3.055819 TGCTCTGGTTGTTCATACTCTCC 60.056 47.826 0.00 0.00 0.00 3.71
953 970 3.775202 CTCTGGTTGTTCATACTCTCCG 58.225 50.000 0.00 0.00 0.00 4.63
954 971 2.496070 TCTGGTTGTTCATACTCTCCGG 59.504 50.000 0.00 0.00 0.00 5.14
955 972 1.066430 TGGTTGTTCATACTCTCCGGC 60.066 52.381 0.00 0.00 0.00 6.13
956 973 1.066430 GGTTGTTCATACTCTCCGGCA 60.066 52.381 0.00 0.00 0.00 5.69
957 974 2.271800 GTTGTTCATACTCTCCGGCAG 58.728 52.381 0.00 0.00 0.00 4.85
958 975 0.175760 TGTTCATACTCTCCGGCAGC 59.824 55.000 0.00 0.00 0.00 5.25
959 976 0.530870 GTTCATACTCTCCGGCAGCC 60.531 60.000 0.00 0.00 0.00 4.85
960 977 0.975556 TTCATACTCTCCGGCAGCCA 60.976 55.000 13.30 0.00 0.00 4.75
961 978 1.068753 CATACTCTCCGGCAGCCAG 59.931 63.158 13.30 0.00 0.00 4.85
1050 1067 3.844090 GAGGAGGAGGCTCGTGGC 61.844 72.222 15.38 2.35 40.90 5.01
1113 1130 1.798735 CTTTCCATGGACGCAGCTG 59.201 57.895 15.91 10.11 0.00 4.24
1161 1178 3.036577 CGGCTCCGGCGTATAGAA 58.963 61.111 6.01 0.00 46.33 2.10
1222 1239 2.044946 GGATCCAGCGTGCCCTTT 60.045 61.111 6.95 0.00 0.00 3.11
1232 1249 0.676466 CGTGCCCTTTGTATCCAGCA 60.676 55.000 0.00 0.00 0.00 4.41
1270 1287 2.997986 GTGCAATTCCTCATTTGCTTGG 59.002 45.455 8.84 0.00 46.50 3.61
1308 1329 3.935203 TCTGATCTCCTTTCAATTCGTGC 59.065 43.478 0.00 0.00 0.00 5.34
1334 1355 3.902261 CAGTTGATTTGCTGCAGTGTA 57.098 42.857 16.64 0.63 0.00 2.90
1336 1357 2.224079 AGTTGATTTGCTGCAGTGTACG 59.776 45.455 16.64 0.00 0.00 3.67
1339 1360 0.238289 ATTTGCTGCAGTGTACGTGC 59.762 50.000 16.64 12.05 41.59 5.34
1405 1427 1.532868 GCAACAGCCAACAGTAGTGAG 59.467 52.381 4.09 0.00 0.00 3.51
1464 1487 3.818210 ACAATTGGTTTGTGTAGATGCGA 59.182 39.130 10.83 0.00 46.80 5.10
1483 1506 5.513376 TGCGATATGAACAAATTCTGATGC 58.487 37.500 0.00 0.00 35.69 3.91
1504 1527 4.082571 TGCCCAAACCATTTTGTTTTGTTG 60.083 37.500 0.00 0.00 40.61 3.33
1592 1622 5.048782 TGTTGATGCCAATGTCTTCTACAAC 60.049 40.000 0.00 0.00 42.70 3.32
1645 1675 9.515020 GTCTTCAAGTTTGATTGTGTGAAATAA 57.485 29.630 0.00 0.00 37.00 1.40
1763 1793 9.559732 TGTCTATGAACAGAAATCAGAAAAAGA 57.440 29.630 0.00 0.00 0.00 2.52
1847 1878 8.321353 TGTGCCCTATGGAATACTATATTTCAG 58.679 37.037 0.00 0.00 0.00 3.02
1962 2024 8.717821 GTTGTGCAGTATCTCTTTGTATGTAAA 58.282 33.333 0.00 0.00 0.00 2.01
1963 2025 8.251750 TGTGCAGTATCTCTTTGTATGTAAAC 57.748 34.615 0.00 0.00 0.00 2.01
1964 2026 7.333423 TGTGCAGTATCTCTTTGTATGTAAACC 59.667 37.037 0.00 0.00 0.00 3.27
1965 2027 7.333423 GTGCAGTATCTCTTTGTATGTAAACCA 59.667 37.037 0.00 0.00 0.00 3.67
1966 2028 8.046708 TGCAGTATCTCTTTGTATGTAAACCAT 58.953 33.333 0.00 0.00 37.58 3.55
1967 2029 8.893727 GCAGTATCTCTTTGTATGTAAACCATT 58.106 33.333 0.00 0.00 34.86 3.16
2098 2160 6.618287 TTCACTAACAATTTCTCAGGTGTG 57.382 37.500 0.00 0.00 0.00 3.82
2099 2161 5.680619 TCACTAACAATTTCTCAGGTGTGT 58.319 37.500 0.00 0.00 0.00 3.72
2100 2162 5.758296 TCACTAACAATTTCTCAGGTGTGTC 59.242 40.000 0.00 0.00 0.00 3.67
2101 2163 5.760253 CACTAACAATTTCTCAGGTGTGTCT 59.240 40.000 0.00 0.00 0.00 3.41
2102 2164 5.992217 ACTAACAATTTCTCAGGTGTGTCTC 59.008 40.000 0.00 0.00 0.00 3.36
2103 2165 3.393800 ACAATTTCTCAGGTGTGTCTCG 58.606 45.455 0.00 0.00 0.00 4.04
2104 2166 2.086054 ATTTCTCAGGTGTGTCTCGC 57.914 50.000 0.00 0.00 0.00 5.03
2105 2167 0.033504 TTTCTCAGGTGTGTCTCGCC 59.966 55.000 0.00 0.00 46.27 5.54
2110 2172 3.052081 GGTGTGTCTCGCCACTCT 58.948 61.111 0.00 0.00 45.32 3.24
2111 2173 2.264124 GGTGTGTCTCGCCACTCTA 58.736 57.895 0.00 0.00 45.32 2.43
2112 2174 0.171455 GGTGTGTCTCGCCACTCTAG 59.829 60.000 0.00 0.00 45.32 2.43
2113 2175 0.882474 GTGTGTCTCGCCACTCTAGT 59.118 55.000 0.00 0.00 36.30 2.57
2114 2176 1.269998 GTGTGTCTCGCCACTCTAGTT 59.730 52.381 0.00 0.00 36.30 2.24
2115 2177 2.486982 GTGTGTCTCGCCACTCTAGTTA 59.513 50.000 0.00 0.00 36.30 2.24
2116 2178 2.747989 TGTGTCTCGCCACTCTAGTTAG 59.252 50.000 0.00 0.00 36.30 2.34
2117 2179 1.743958 TGTCTCGCCACTCTAGTTAGC 59.256 52.381 0.00 0.00 0.00 3.09
2118 2180 1.743958 GTCTCGCCACTCTAGTTAGCA 59.256 52.381 0.00 0.00 0.00 3.49
2119 2181 2.017782 TCTCGCCACTCTAGTTAGCAG 58.982 52.381 0.00 1.26 0.00 4.24
2120 2182 0.456221 TCGCCACTCTAGTTAGCAGC 59.544 55.000 0.00 0.00 0.00 5.25
2121 2183 0.528684 CGCCACTCTAGTTAGCAGCC 60.529 60.000 0.00 0.00 0.00 4.85
2122 2184 0.537188 GCCACTCTAGTTAGCAGCCA 59.463 55.000 0.00 0.00 0.00 4.75
2123 2185 1.472376 GCCACTCTAGTTAGCAGCCAG 60.472 57.143 0.00 0.00 0.00 4.85
2124 2186 1.827969 CCACTCTAGTTAGCAGCCAGT 59.172 52.381 0.00 0.00 0.00 4.00
2125 2187 2.417924 CCACTCTAGTTAGCAGCCAGTG 60.418 54.545 0.00 0.00 0.00 3.66
2126 2188 2.232452 CACTCTAGTTAGCAGCCAGTGT 59.768 50.000 0.00 0.00 0.00 3.55
2127 2189 2.232452 ACTCTAGTTAGCAGCCAGTGTG 59.768 50.000 0.00 0.00 0.00 3.82
2128 2190 1.066858 TCTAGTTAGCAGCCAGTGTGC 60.067 52.381 0.00 0.00 41.54 4.57
2129 2191 0.036388 TAGTTAGCAGCCAGTGTGCC 60.036 55.000 2.29 0.00 42.24 5.01
2130 2192 2.358615 TTAGCAGCCAGTGTGCCG 60.359 61.111 2.29 0.00 42.24 5.69
2135 2197 4.569180 AGCCAGTGTGCCGCTGTT 62.569 61.111 12.71 1.44 39.99 3.16
2136 2198 4.332637 GCCAGTGTGCCGCTGTTG 62.333 66.667 12.71 2.75 39.99 3.33
2137 2199 3.663176 CCAGTGTGCCGCTGTTGG 61.663 66.667 12.71 0.00 39.99 3.77
2138 2200 2.901840 CAGTGTGCCGCTGTTGGT 60.902 61.111 7.38 0.00 37.23 3.67
2139 2201 1.596752 CAGTGTGCCGCTGTTGGTA 60.597 57.895 7.38 0.00 37.23 3.25
2140 2202 1.597027 AGTGTGCCGCTGTTGGTAC 60.597 57.895 0.00 3.18 44.03 3.34
2141 2203 1.597027 GTGTGCCGCTGTTGGTACT 60.597 57.895 9.72 0.00 44.09 2.73
2142 2204 0.320073 GTGTGCCGCTGTTGGTACTA 60.320 55.000 9.72 0.00 44.09 1.82
2143 2205 0.393448 TGTGCCGCTGTTGGTACTAA 59.607 50.000 9.72 0.00 44.09 2.24
2144 2206 1.076332 GTGCCGCTGTTGGTACTAAG 58.924 55.000 0.00 0.00 40.97 2.18
2145 2207 0.682852 TGCCGCTGTTGGTACTAAGT 59.317 50.000 0.00 0.00 0.00 2.24
2146 2208 1.337447 TGCCGCTGTTGGTACTAAGTC 60.337 52.381 0.00 0.00 0.00 3.01
2147 2209 1.337447 GCCGCTGTTGGTACTAAGTCA 60.337 52.381 0.00 0.00 0.00 3.41
2148 2210 2.868839 GCCGCTGTTGGTACTAAGTCAA 60.869 50.000 0.00 0.00 0.00 3.18
2149 2211 2.993899 CCGCTGTTGGTACTAAGTCAAG 59.006 50.000 0.00 0.00 0.00 3.02
2150 2212 2.993899 CGCTGTTGGTACTAAGTCAAGG 59.006 50.000 0.00 0.00 0.00 3.61
2151 2213 2.742589 GCTGTTGGTACTAAGTCAAGGC 59.257 50.000 0.00 0.00 0.00 4.35
2152 2214 3.805807 GCTGTTGGTACTAAGTCAAGGCA 60.806 47.826 0.00 0.00 0.00 4.75
2153 2215 4.385825 CTGTTGGTACTAAGTCAAGGCAA 58.614 43.478 0.00 0.00 0.00 4.52
2154 2216 4.980573 TGTTGGTACTAAGTCAAGGCAAT 58.019 39.130 0.00 0.00 0.00 3.56
2155 2217 5.001232 TGTTGGTACTAAGTCAAGGCAATC 58.999 41.667 0.00 0.00 0.00 2.67
2156 2218 4.901197 TGGTACTAAGTCAAGGCAATCA 57.099 40.909 0.00 0.00 0.00 2.57
2157 2219 5.235850 TGGTACTAAGTCAAGGCAATCAA 57.764 39.130 0.00 0.00 0.00 2.57
2158 2220 5.815581 TGGTACTAAGTCAAGGCAATCAAT 58.184 37.500 0.00 0.00 0.00 2.57
2159 2221 5.647658 TGGTACTAAGTCAAGGCAATCAATG 59.352 40.000 0.00 0.00 0.00 2.82
2175 2237 7.215719 CAATCAATGCAGAATGGAGATATGT 57.784 36.000 0.00 0.00 42.42 2.29
2176 2238 7.658261 CAATCAATGCAGAATGGAGATATGTT 58.342 34.615 0.00 0.00 42.42 2.71
2177 2239 8.789762 CAATCAATGCAGAATGGAGATATGTTA 58.210 33.333 0.00 0.00 42.42 2.41
2178 2240 7.734924 TCAATGCAGAATGGAGATATGTTAC 57.265 36.000 0.00 0.00 42.42 2.50
2179 2241 7.512130 TCAATGCAGAATGGAGATATGTTACT 58.488 34.615 0.00 0.00 42.42 2.24
2180 2242 7.658982 TCAATGCAGAATGGAGATATGTTACTC 59.341 37.037 0.00 0.00 42.42 2.59
2181 2243 6.471146 ATGCAGAATGGAGATATGTTACTCC 58.529 40.000 0.00 0.00 42.42 3.85
2198 2260 8.215926 TGTTACTCCGAATATAAAATTGGTGG 57.784 34.615 0.00 0.00 0.00 4.61
2199 2261 7.283580 TGTTACTCCGAATATAAAATTGGTGGG 59.716 37.037 0.00 0.00 0.00 4.61
2200 2262 6.008696 ACTCCGAATATAAAATTGGTGGGA 57.991 37.500 0.00 0.00 0.00 4.37
2201 2263 6.062095 ACTCCGAATATAAAATTGGTGGGAG 58.938 40.000 0.00 0.00 42.27 4.30
2202 2264 6.126594 ACTCCGAATATAAAATTGGTGGGAGA 60.127 38.462 7.93 0.00 39.69 3.71
2203 2265 6.296026 TCCGAATATAAAATTGGTGGGAGAG 58.704 40.000 0.00 0.00 0.00 3.20
2204 2266 5.473504 CCGAATATAAAATTGGTGGGAGAGG 59.526 44.000 0.00 0.00 0.00 3.69
2205 2267 5.473504 CGAATATAAAATTGGTGGGAGAGGG 59.526 44.000 0.00 0.00 0.00 4.30
2206 2268 3.688049 ATAAAATTGGTGGGAGAGGGG 57.312 47.619 0.00 0.00 0.00 4.79
2207 2269 1.466858 AAAATTGGTGGGAGAGGGGA 58.533 50.000 0.00 0.00 0.00 4.81
2208 2270 1.466858 AAATTGGTGGGAGAGGGGAA 58.533 50.000 0.00 0.00 0.00 3.97
2209 2271 1.466858 AATTGGTGGGAGAGGGGAAA 58.533 50.000 0.00 0.00 0.00 3.13
2210 2272 0.704664 ATTGGTGGGAGAGGGGAAAC 59.295 55.000 0.00 0.00 0.00 2.78
2211 2273 0.699577 TTGGTGGGAGAGGGGAAACA 60.700 55.000 0.00 0.00 0.00 2.83
2212 2274 0.477597 TGGTGGGAGAGGGGAAACAT 60.478 55.000 0.00 0.00 0.00 2.71
2213 2275 0.034089 GGTGGGAGAGGGGAAACATG 60.034 60.000 0.00 0.00 0.00 3.21
2214 2276 0.034089 GTGGGAGAGGGGAAACATGG 60.034 60.000 0.00 0.00 0.00 3.66
2215 2277 0.178846 TGGGAGAGGGGAAACATGGA 60.179 55.000 0.00 0.00 0.00 3.41
2216 2278 0.256177 GGGAGAGGGGAAACATGGAC 59.744 60.000 0.00 0.00 0.00 4.02
2217 2279 1.290134 GGAGAGGGGAAACATGGACT 58.710 55.000 0.00 0.00 0.00 3.85
2218 2280 1.065126 GGAGAGGGGAAACATGGACTG 60.065 57.143 0.00 0.00 0.00 3.51
2219 2281 1.909302 GAGAGGGGAAACATGGACTGA 59.091 52.381 0.00 0.00 0.00 3.41
2220 2282 1.630878 AGAGGGGAAACATGGACTGAC 59.369 52.381 0.00 0.00 0.00 3.51
2221 2283 1.351017 GAGGGGAAACATGGACTGACA 59.649 52.381 0.00 0.00 0.00 3.58
2222 2284 1.995542 AGGGGAAACATGGACTGACAT 59.004 47.619 0.00 0.00 0.00 3.06
2229 2291 1.817357 CATGGACTGACATGCACTGT 58.183 50.000 0.00 0.00 41.43 3.55
2230 2292 2.156917 CATGGACTGACATGCACTGTT 58.843 47.619 0.00 0.00 41.43 3.16
2231 2293 2.346766 TGGACTGACATGCACTGTTT 57.653 45.000 0.00 0.00 38.54 2.83
2232 2294 3.483808 TGGACTGACATGCACTGTTTA 57.516 42.857 0.00 0.00 38.54 2.01
2233 2295 3.138304 TGGACTGACATGCACTGTTTAC 58.862 45.455 0.00 0.00 38.54 2.01
2234 2296 3.138304 GGACTGACATGCACTGTTTACA 58.862 45.455 0.00 0.00 38.54 2.41
2235 2297 3.058914 GGACTGACATGCACTGTTTACAC 60.059 47.826 0.00 0.00 38.54 2.90
2236 2298 3.540617 ACTGACATGCACTGTTTACACA 58.459 40.909 0.00 0.00 38.54 3.72
2237 2299 4.136796 ACTGACATGCACTGTTTACACAT 58.863 39.130 0.00 0.00 38.54 3.21
2238 2300 4.214119 ACTGACATGCACTGTTTACACATC 59.786 41.667 0.00 0.00 38.54 3.06
2239 2301 4.133078 TGACATGCACTGTTTACACATCA 58.867 39.130 0.00 0.00 38.54 3.07
2240 2302 4.213906 TGACATGCACTGTTTACACATCAG 59.786 41.667 0.00 0.00 38.54 2.90
2241 2303 3.503363 ACATGCACTGTTTACACATCAGG 59.497 43.478 0.00 0.00 32.90 3.86
2242 2304 1.879380 TGCACTGTTTACACATCAGGC 59.121 47.619 0.00 0.00 34.02 4.85
2243 2305 1.200020 GCACTGTTTACACATCAGGCC 59.800 52.381 0.00 0.00 34.02 5.19
2244 2306 2.783135 CACTGTTTACACATCAGGCCT 58.217 47.619 0.00 0.00 34.02 5.19
2245 2307 3.868369 GCACTGTTTACACATCAGGCCTA 60.868 47.826 3.98 0.00 34.02 3.93
2246 2308 4.517285 CACTGTTTACACATCAGGCCTAT 58.483 43.478 3.98 0.00 34.02 2.57
2247 2309 4.572389 CACTGTTTACACATCAGGCCTATC 59.428 45.833 3.98 0.00 34.02 2.08
2248 2310 3.792401 TGTTTACACATCAGGCCTATCG 58.208 45.455 3.98 0.00 0.00 2.92
2249 2311 3.196901 TGTTTACACATCAGGCCTATCGT 59.803 43.478 3.98 0.00 0.00 3.73
2250 2312 3.728076 TTACACATCAGGCCTATCGTC 57.272 47.619 3.98 0.00 0.00 4.20
2251 2313 1.485124 ACACATCAGGCCTATCGTCA 58.515 50.000 3.98 0.00 0.00 4.35
2252 2314 1.410517 ACACATCAGGCCTATCGTCAG 59.589 52.381 3.98 0.00 0.00 3.51
2253 2315 1.043816 ACATCAGGCCTATCGTCAGG 58.956 55.000 3.98 0.00 38.86 3.86
2254 2316 1.332195 CATCAGGCCTATCGTCAGGA 58.668 55.000 3.98 0.00 38.00 3.86
2255 2317 1.898472 CATCAGGCCTATCGTCAGGAT 59.102 52.381 3.98 0.00 38.00 3.24
2256 2318 2.088104 TCAGGCCTATCGTCAGGATT 57.912 50.000 3.98 0.00 38.00 3.01
2257 2319 2.398588 TCAGGCCTATCGTCAGGATTT 58.601 47.619 3.98 0.00 38.00 2.17
2258 2320 2.103094 TCAGGCCTATCGTCAGGATTTG 59.897 50.000 3.98 0.00 38.00 2.32
2259 2321 2.103094 CAGGCCTATCGTCAGGATTTGA 59.897 50.000 3.98 0.00 38.00 2.69
2269 2331 3.805066 TCAGGATTTGACATGTGGGAA 57.195 42.857 1.15 0.00 0.00 3.97
2270 2332 4.111255 TCAGGATTTGACATGTGGGAAA 57.889 40.909 1.15 0.00 0.00 3.13
2271 2333 4.478203 TCAGGATTTGACATGTGGGAAAA 58.522 39.130 1.15 0.00 0.00 2.29
2272 2334 4.523943 TCAGGATTTGACATGTGGGAAAAG 59.476 41.667 1.15 0.00 0.00 2.27
2273 2335 3.834231 AGGATTTGACATGTGGGAAAAGG 59.166 43.478 1.15 0.00 0.00 3.11
2274 2336 3.831911 GGATTTGACATGTGGGAAAAGGA 59.168 43.478 1.15 0.00 0.00 3.36
2275 2337 4.082026 GGATTTGACATGTGGGAAAAGGAG 60.082 45.833 1.15 0.00 0.00 3.69
2276 2338 3.874383 TTGACATGTGGGAAAAGGAGA 57.126 42.857 1.15 0.00 0.00 3.71
2277 2339 3.140325 TGACATGTGGGAAAAGGAGAC 57.860 47.619 1.15 0.00 0.00 3.36
2278 2340 2.441375 TGACATGTGGGAAAAGGAGACA 59.559 45.455 1.15 0.00 0.00 3.41
2279 2341 3.117701 TGACATGTGGGAAAAGGAGACAA 60.118 43.478 1.15 0.00 0.00 3.18
2280 2342 3.490348 ACATGTGGGAAAAGGAGACAAG 58.510 45.455 0.00 0.00 0.00 3.16
2281 2343 1.981256 TGTGGGAAAAGGAGACAAGC 58.019 50.000 0.00 0.00 0.00 4.01
2282 2344 1.214175 TGTGGGAAAAGGAGACAAGCA 59.786 47.619 0.00 0.00 0.00 3.91
2283 2345 2.158475 TGTGGGAAAAGGAGACAAGCAT 60.158 45.455 0.00 0.00 0.00 3.79
2284 2346 3.073798 TGTGGGAAAAGGAGACAAGCATA 59.926 43.478 0.00 0.00 0.00 3.14
2285 2347 4.263905 TGTGGGAAAAGGAGACAAGCATAT 60.264 41.667 0.00 0.00 0.00 1.78
2286 2348 5.045213 TGTGGGAAAAGGAGACAAGCATATA 60.045 40.000 0.00 0.00 0.00 0.86
2287 2349 5.297029 GTGGGAAAAGGAGACAAGCATATAC 59.703 44.000 0.00 0.00 0.00 1.47
2288 2350 5.045213 TGGGAAAAGGAGACAAGCATATACA 60.045 40.000 0.00 0.00 0.00 2.29
2289 2351 6.064717 GGGAAAAGGAGACAAGCATATACAT 58.935 40.000 0.00 0.00 0.00 2.29
2290 2352 6.016777 GGGAAAAGGAGACAAGCATATACATG 60.017 42.308 0.00 0.00 35.07 3.21
2291 2353 6.767902 GGAAAAGGAGACAAGCATATACATGA 59.232 38.462 0.00 0.00 33.67 3.07
2292 2354 7.446625 GGAAAAGGAGACAAGCATATACATGAT 59.553 37.037 0.00 0.00 33.67 2.45
2293 2355 8.757982 AAAAGGAGACAAGCATATACATGATT 57.242 30.769 0.00 0.00 41.38 2.57
2294 2356 8.757982 AAAGGAGACAAGCATATACATGATTT 57.242 30.769 0.00 0.00 38.70 2.17
2295 2357 9.851686 AAAGGAGACAAGCATATACATGATTTA 57.148 29.630 0.00 0.00 38.70 1.40
2297 2359 9.445878 AGGAGACAAGCATATACATGATTTATG 57.554 33.333 0.00 4.96 38.70 1.90
2298 2360 9.440773 GGAGACAAGCATATACATGATTTATGA 57.559 33.333 0.00 0.00 38.70 2.15
2303 2365 9.783256 CAAGCATATACATGATTTATGATGTGG 57.217 33.333 0.00 0.00 38.70 4.17
2304 2366 9.524496 AAGCATATACATGATTTATGATGTGGT 57.476 29.630 0.00 0.00 37.49 4.16
2312 2374 9.494271 ACATGATTTATGATGTGGTATACAGAC 57.506 33.333 5.01 1.39 40.38 3.51
2313 2375 9.716531 CATGATTTATGATGTGGTATACAGACT 57.283 33.333 5.01 0.00 43.80 3.24
2323 2385 9.694137 GATGTGGTATACAGACTAAAATACTCC 57.306 37.037 5.01 0.00 43.80 3.85
2324 2386 8.834004 TGTGGTATACAGACTAAAATACTCCT 57.166 34.615 5.01 0.00 33.42 3.69
2325 2387 8.692710 TGTGGTATACAGACTAAAATACTCCTG 58.307 37.037 5.01 0.00 33.42 3.86
2326 2388 7.652507 GTGGTATACAGACTAAAATACTCCTGC 59.347 40.741 5.01 0.00 0.00 4.85
2327 2389 7.153315 GGTATACAGACTAAAATACTCCTGCC 58.847 42.308 5.01 0.00 0.00 4.85
2328 2390 7.015389 GGTATACAGACTAAAATACTCCTGCCT 59.985 40.741 5.01 0.00 0.00 4.75
2329 2391 5.763876 ACAGACTAAAATACTCCTGCCTT 57.236 39.130 0.00 0.00 0.00 4.35
2330 2392 5.735766 ACAGACTAAAATACTCCTGCCTTC 58.264 41.667 0.00 0.00 0.00 3.46
2331 2393 5.248477 ACAGACTAAAATACTCCTGCCTTCA 59.752 40.000 0.00 0.00 0.00 3.02
2332 2394 6.069963 ACAGACTAAAATACTCCTGCCTTCAT 60.070 38.462 0.00 0.00 0.00 2.57
2333 2395 6.481644 CAGACTAAAATACTCCTGCCTTCATC 59.518 42.308 0.00 0.00 0.00 2.92
2334 2396 6.156949 AGACTAAAATACTCCTGCCTTCATCA 59.843 38.462 0.00 0.00 0.00 3.07
2335 2397 6.721318 ACTAAAATACTCCTGCCTTCATCAA 58.279 36.000 0.00 0.00 0.00 2.57
2336 2398 7.349598 ACTAAAATACTCCTGCCTTCATCAAT 58.650 34.615 0.00 0.00 0.00 2.57
2337 2399 6.705863 AAAATACTCCTGCCTTCATCAATC 57.294 37.500 0.00 0.00 0.00 2.67
2338 2400 5.643421 AATACTCCTGCCTTCATCAATCT 57.357 39.130 0.00 0.00 0.00 2.40
2339 2401 5.643421 ATACTCCTGCCTTCATCAATCTT 57.357 39.130 0.00 0.00 0.00 2.40
2340 2402 3.618351 ACTCCTGCCTTCATCAATCTTG 58.382 45.455 0.00 0.00 0.00 3.02
2341 2403 2.950309 CTCCTGCCTTCATCAATCTTGG 59.050 50.000 0.00 0.00 0.00 3.61
2342 2404 2.577563 TCCTGCCTTCATCAATCTTGGA 59.422 45.455 0.00 0.00 0.00 3.53
2343 2405 2.950309 CCTGCCTTCATCAATCTTGGAG 59.050 50.000 0.00 0.00 0.00 3.86
2344 2406 2.358267 CTGCCTTCATCAATCTTGGAGC 59.642 50.000 0.00 0.00 0.00 4.70
2345 2407 2.291089 TGCCTTCATCAATCTTGGAGCA 60.291 45.455 0.00 0.00 0.00 4.26
2346 2408 2.358267 GCCTTCATCAATCTTGGAGCAG 59.642 50.000 0.00 0.00 0.00 4.24
2347 2409 2.358267 CCTTCATCAATCTTGGAGCAGC 59.642 50.000 0.00 0.00 0.00 5.25
2348 2410 3.280295 CTTCATCAATCTTGGAGCAGCT 58.720 45.455 0.00 0.00 0.00 4.24
2349 2411 2.640184 TCATCAATCTTGGAGCAGCTG 58.360 47.619 10.11 10.11 0.00 4.24
2350 2412 2.237893 TCATCAATCTTGGAGCAGCTGA 59.762 45.455 20.43 0.00 0.00 4.26
2351 2413 2.398252 TCAATCTTGGAGCAGCTGAG 57.602 50.000 20.43 5.33 0.00 3.35
2352 2414 1.627329 TCAATCTTGGAGCAGCTGAGT 59.373 47.619 20.43 2.61 0.00 3.41
2353 2415 1.738350 CAATCTTGGAGCAGCTGAGTG 59.262 52.381 20.43 0.00 0.00 3.51
2354 2416 0.252479 ATCTTGGAGCAGCTGAGTGG 59.748 55.000 20.43 1.66 0.00 4.00
2355 2417 1.123861 TCTTGGAGCAGCTGAGTGGT 61.124 55.000 20.43 0.00 0.00 4.16
2356 2418 0.673022 CTTGGAGCAGCTGAGTGGTC 60.673 60.000 20.43 6.07 43.00 4.02
2358 2420 3.386592 GAGCAGCTGAGTGGTCCT 58.613 61.111 20.43 2.06 38.73 3.85
2359 2421 1.079266 GAGCAGCTGAGTGGTCCTG 60.079 63.158 20.43 0.00 38.73 3.86
2360 2422 1.534959 AGCAGCTGAGTGGTCCTGA 60.535 57.895 20.43 0.00 0.00 3.86
2361 2423 0.908656 AGCAGCTGAGTGGTCCTGAT 60.909 55.000 20.43 0.00 0.00 2.90
2362 2424 0.826715 GCAGCTGAGTGGTCCTGATA 59.173 55.000 20.43 0.00 0.00 2.15
2363 2425 1.415659 GCAGCTGAGTGGTCCTGATAT 59.584 52.381 20.43 0.00 0.00 1.63
2364 2426 2.630098 GCAGCTGAGTGGTCCTGATATA 59.370 50.000 20.43 0.00 0.00 0.86
2365 2427 3.305950 GCAGCTGAGTGGTCCTGATATAG 60.306 52.174 20.43 0.00 0.00 1.31
2366 2428 4.148079 CAGCTGAGTGGTCCTGATATAGA 58.852 47.826 8.42 0.00 0.00 1.98
2367 2429 4.218200 CAGCTGAGTGGTCCTGATATAGAG 59.782 50.000 8.42 0.00 0.00 2.43
2368 2430 4.105537 AGCTGAGTGGTCCTGATATAGAGA 59.894 45.833 0.00 0.00 0.00 3.10
2369 2431 4.458989 GCTGAGTGGTCCTGATATAGAGAG 59.541 50.000 0.00 0.00 0.00 3.20
2370 2432 4.402829 TGAGTGGTCCTGATATAGAGAGC 58.597 47.826 0.00 0.00 0.00 4.09
2371 2433 4.141158 TGAGTGGTCCTGATATAGAGAGCA 60.141 45.833 0.00 0.00 34.18 4.26
2372 2434 4.406456 AGTGGTCCTGATATAGAGAGCAG 58.594 47.826 0.00 0.00 35.92 4.24
2373 2435 3.056891 GTGGTCCTGATATAGAGAGCAGC 60.057 52.174 0.00 0.00 35.92 5.25
2374 2436 3.181424 TGGTCCTGATATAGAGAGCAGCT 60.181 47.826 0.00 0.00 32.73 4.24
2375 2437 3.193267 GGTCCTGATATAGAGAGCAGCTG 59.807 52.174 10.11 10.11 0.00 4.24
2376 2438 4.078537 GTCCTGATATAGAGAGCAGCTGA 58.921 47.826 20.43 0.00 0.00 4.26
2377 2439 4.156556 GTCCTGATATAGAGAGCAGCTGAG 59.843 50.000 20.43 0.28 0.00 3.35
2378 2440 3.119388 CCTGATATAGAGAGCAGCTGAGC 60.119 52.174 20.43 8.13 0.00 4.26
2385 2447 3.459965 AGCAGCTGAGCTCGGGAG 61.460 66.667 23.87 9.86 42.18 4.30
2399 2461 4.065321 CTCGGGAGCCATATTGGATATC 57.935 50.000 0.00 0.00 35.51 1.63
2400 2462 2.771943 TCGGGAGCCATATTGGATATCC 59.228 50.000 15.39 15.39 35.51 2.59
2401 2463 2.158755 CGGGAGCCATATTGGATATCCC 60.159 54.545 19.34 16.28 45.44 3.85
2402 2464 2.158755 GGGAGCCATATTGGATATCCCG 60.159 54.545 19.34 2.66 42.51 5.14
2411 2473 6.127925 CCATATTGGATATCCCGTCATGTTTG 60.128 42.308 19.34 4.76 40.96 2.93
2470 2533 3.128764 TGATCGTAGACGCTCATTGTCTT 59.871 43.478 4.60 0.00 44.00 3.01
2662 5207 3.886123 AGCGGCAGTATTACCAGAAAAT 58.114 40.909 1.45 0.00 0.00 1.82
2782 5343 4.402155 AGAAACAACCTCAACAATCTTGCA 59.598 37.500 0.00 0.00 0.00 4.08
2976 5544 6.741992 TGCAGGTTTATCTTGAATACACAG 57.258 37.500 0.00 0.00 0.00 3.66
3139 5713 8.308931 ACGTACAACCTATGTATACATAATGGG 58.691 37.037 24.48 22.48 45.87 4.00
3150 7621 2.117865 ACATAATGGGCAATGGTTGGG 58.882 47.619 0.00 0.00 0.00 4.12
3164 7635 2.291865 TGGTTGGGGCATAACAATGCTA 60.292 45.455 9.95 0.00 46.22 3.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 6.326323 ACACCACAAGGAAGATAAAAATTGGT 59.674 34.615 0.00 0.00 38.69 3.67
346 354 1.736032 GCACCACCATCTAGTCGACAC 60.736 57.143 19.50 0.00 0.00 3.67
368 376 1.445095 GCTGAGAGATCCATGCGGT 59.555 57.895 0.00 0.00 0.00 5.68
381 389 3.807538 GGTGTGGCATGCGCTGAG 61.808 66.667 12.44 0.00 38.60 3.35
386 394 4.041917 GTGGTGGTGTGGCATGCG 62.042 66.667 12.44 0.00 0.00 4.73
445 453 2.929960 GCATTGATTGATCCATGCGAG 58.070 47.619 12.46 0.00 43.18 5.03
487 495 2.002586 CACCACCATCTTGTCGATGTC 58.997 52.381 0.00 0.00 46.56 3.06
496 504 4.042809 TGGATAAGACAACACCACCATCTT 59.957 41.667 0.00 0.00 34.16 2.40
508 516 4.141959 TGCACTGATCGATGGATAAGACAA 60.142 41.667 0.54 0.00 35.05 3.18
539 547 7.290726 GTCACATAGCGGATGCGACATTAAG 62.291 48.000 12.10 0.00 44.00 1.85
627 635 2.115291 GGAGCCAAATCGCCACTCC 61.115 63.158 0.00 0.00 40.14 3.85
628 636 2.115291 GGGAGCCAAATCGCCACTC 61.115 63.158 0.00 0.00 0.00 3.51
629 637 2.044946 GGGAGCCAAATCGCCACT 60.045 61.111 0.00 0.00 0.00 4.00
630 638 3.508840 CGGGAGCCAAATCGCCAC 61.509 66.667 0.00 0.00 0.00 5.01
631 639 3.680620 CTCGGGAGCCAAATCGCCA 62.681 63.158 0.00 0.00 0.00 5.69
632 640 2.897350 CTCGGGAGCCAAATCGCC 60.897 66.667 0.00 0.00 0.00 5.54
751 764 2.969628 AAGGATAAGCGTGGACTCTG 57.030 50.000 0.00 0.00 0.00 3.35
762 779 4.498345 CGGGAAGAGAGACGAAAGGATAAG 60.498 50.000 0.00 0.00 0.00 1.73
798 815 2.565841 GAGAGAGAGGAGAGCTCAGTC 58.434 57.143 17.77 9.12 34.85 3.51
801 818 1.212688 CTGGAGAGAGAGGAGAGCTCA 59.787 57.143 17.77 0.00 34.85 4.26
840 857 1.068741 ACGAACAAGAGAAAGACCGCT 59.931 47.619 0.00 0.00 0.00 5.52
951 968 4.172512 ATGCTCTCTGGCTGCCGG 62.173 66.667 21.69 21.69 0.00 6.13
952 969 2.895865 CATGCTCTCTGGCTGCCG 60.896 66.667 14.98 9.13 0.00 5.69
953 970 2.340673 ATCCATGCTCTCTGGCTGCC 62.341 60.000 12.87 12.87 33.56 4.85
954 971 0.885596 GATCCATGCTCTCTGGCTGC 60.886 60.000 0.00 0.00 33.56 5.25
955 972 0.759959 AGATCCATGCTCTCTGGCTG 59.240 55.000 0.00 0.00 33.56 4.85
956 973 0.759959 CAGATCCATGCTCTCTGGCT 59.240 55.000 8.68 0.00 34.17 4.75
957 974 0.250381 CCAGATCCATGCTCTCTGGC 60.250 60.000 18.01 0.00 46.89 4.85
959 976 0.600518 CGCCAGATCCATGCTCTCTG 60.601 60.000 9.31 9.31 36.89 3.35
960 977 1.047596 ACGCCAGATCCATGCTCTCT 61.048 55.000 0.00 0.00 0.00 3.10
961 978 0.599728 GACGCCAGATCCATGCTCTC 60.600 60.000 0.00 0.00 0.00 3.20
1005 1022 2.803451 AGAACGAATGTCAGCTCGATC 58.197 47.619 12.65 10.43 38.43 3.69
1047 1064 4.641645 CTCCAACACCGCTGGCCA 62.642 66.667 4.71 4.71 33.63 5.36
1050 1067 4.988598 ACGCTCCAACACCGCTGG 62.989 66.667 0.00 0.00 35.05 4.85
1054 1071 4.368808 CGCAACGCTCCAACACCG 62.369 66.667 0.00 0.00 0.00 4.94
1125 1142 2.362717 CCGAGGAGGGAGACTACAAATC 59.637 54.545 0.00 0.00 35.97 2.17
1155 1172 5.014858 GGTACCTGATCCATCCGTTCTATA 58.985 45.833 4.06 0.00 0.00 1.31
1157 1174 3.228453 GGTACCTGATCCATCCGTTCTA 58.772 50.000 4.06 0.00 0.00 2.10
1232 1249 1.008875 CACGTACGAGTGCTGCATGT 61.009 55.000 24.41 7.96 35.17 3.21
1270 1287 5.669477 AGATCAGAAACAGAGGAGCATTAC 58.331 41.667 0.00 0.00 0.00 1.89
1325 1346 2.686558 AAATTGCACGTACACTGCAG 57.313 45.000 13.48 13.48 45.21 4.41
1369 1390 6.279882 GGCTGTTGCAAATAATAATTAGCCA 58.720 36.000 0.00 0.00 44.69 4.75
1384 1406 1.134250 TCACTACTGTTGGCTGTTGCA 60.134 47.619 0.00 0.00 41.91 4.08
1405 1427 4.394712 CCACCGTCCACTCCAGCC 62.395 72.222 0.00 0.00 0.00 4.85
1464 1487 6.795144 TTGGGCATCAGAATTTGTTCATAT 57.205 33.333 0.00 0.00 0.00 1.78
1592 1622 3.420893 TGCCACCCAGTCTTTTAATCAG 58.579 45.455 0.00 0.00 0.00 2.90
1605 1635 2.391724 GAAGACCGTCTTGCCACCCA 62.392 60.000 18.59 0.00 36.73 4.51
1645 1675 9.920946 AGACTATTGTACCATCACCATAAAAAT 57.079 29.630 0.00 0.00 0.00 1.82
1729 1759 8.681806 TGATTTCTGTTCATAGACAAACAAACA 58.318 29.630 0.00 0.00 35.13 2.83
1763 1793 4.714308 TGGACAATGAACAAAGACCCTTTT 59.286 37.500 0.00 0.00 0.00 2.27
1814 1845 6.715280 AGTATTCCATAGGGCACATAATGAG 58.285 40.000 0.00 0.00 0.00 2.90
1976 2038 9.579768 AATATGATTGTTTACTATGCGCAAAAA 57.420 25.926 17.11 10.31 0.00 1.94
1977 2039 9.232082 GAATATGATTGTTTACTATGCGCAAAA 57.768 29.630 17.11 7.68 0.00 2.44
1978 2040 7.585936 CGAATATGATTGTTTACTATGCGCAAA 59.414 33.333 17.11 0.00 0.00 3.68
1979 2041 7.068955 CGAATATGATTGTTTACTATGCGCAA 58.931 34.615 17.11 2.72 0.00 4.85
1980 2042 6.347321 CCGAATATGATTGTTTACTATGCGCA 60.347 38.462 14.96 14.96 0.00 6.09
1981 2043 6.015504 CCGAATATGATTGTTTACTATGCGC 58.984 40.000 0.00 0.00 0.00 6.09
1982 2044 6.015504 GCCGAATATGATTGTTTACTATGCG 58.984 40.000 0.00 0.00 0.00 4.73
1983 2045 6.898041 TGCCGAATATGATTGTTTACTATGC 58.102 36.000 0.00 0.00 0.00 3.14
1984 2046 8.773645 TCTTGCCGAATATGATTGTTTACTATG 58.226 33.333 0.00 0.00 0.00 2.23
1985 2047 8.774586 GTCTTGCCGAATATGATTGTTTACTAT 58.225 33.333 0.00 0.00 0.00 2.12
1986 2048 7.766738 TGTCTTGCCGAATATGATTGTTTACTA 59.233 33.333 0.00 0.00 0.00 1.82
1987 2049 6.597672 TGTCTTGCCGAATATGATTGTTTACT 59.402 34.615 0.00 0.00 0.00 2.24
1988 2050 6.781138 TGTCTTGCCGAATATGATTGTTTAC 58.219 36.000 0.00 0.00 0.00 2.01
1989 2051 6.993786 TGTCTTGCCGAATATGATTGTTTA 57.006 33.333 0.00 0.00 0.00 2.01
1990 2052 5.895636 TGTCTTGCCGAATATGATTGTTT 57.104 34.783 0.00 0.00 0.00 2.83
1991 2053 7.587629 CATATGTCTTGCCGAATATGATTGTT 58.412 34.615 0.00 0.00 35.80 2.83
1994 2056 5.706833 TGCATATGTCTTGCCGAATATGATT 59.293 36.000 4.29 0.00 39.39 2.57
2043 2105 5.547465 AGTTCACATTAAACAGATGACCGA 58.453 37.500 0.00 0.00 0.00 4.69
2098 2160 1.743958 TGCTAACTAGAGTGGCGAGAC 59.256 52.381 0.00 0.00 32.75 3.36
2099 2161 2.017782 CTGCTAACTAGAGTGGCGAGA 58.982 52.381 0.00 0.00 32.75 4.04
2100 2162 1.535015 GCTGCTAACTAGAGTGGCGAG 60.535 57.143 0.00 0.22 32.75 5.03
2101 2163 0.456221 GCTGCTAACTAGAGTGGCGA 59.544 55.000 0.00 0.00 32.75 5.54
2102 2164 0.528684 GGCTGCTAACTAGAGTGGCG 60.529 60.000 0.00 0.00 32.75 5.69
2103 2165 0.537188 TGGCTGCTAACTAGAGTGGC 59.463 55.000 0.00 0.00 0.00 5.01
2104 2166 1.827969 ACTGGCTGCTAACTAGAGTGG 59.172 52.381 0.00 0.00 0.00 4.00
2105 2167 2.232452 ACACTGGCTGCTAACTAGAGTG 59.768 50.000 0.00 0.00 36.30 3.51
2106 2168 2.232452 CACACTGGCTGCTAACTAGAGT 59.768 50.000 0.00 0.00 0.00 3.24
2107 2169 2.886081 CACACTGGCTGCTAACTAGAG 58.114 52.381 0.00 0.00 0.00 2.43
2108 2170 1.066858 GCACACTGGCTGCTAACTAGA 60.067 52.381 0.00 0.00 0.00 2.43
2109 2171 1.363744 GCACACTGGCTGCTAACTAG 58.636 55.000 0.00 0.00 0.00 2.57
2110 2172 0.036388 GGCACACTGGCTGCTAACTA 60.036 55.000 0.00 0.00 40.14 2.24
2111 2173 1.302832 GGCACACTGGCTGCTAACT 60.303 57.895 0.00 0.00 40.14 2.24
2112 2174 2.680913 CGGCACACTGGCTGCTAAC 61.681 63.158 0.00 0.00 41.25 2.34
2113 2175 2.358615 CGGCACACTGGCTGCTAA 60.359 61.111 0.00 0.00 41.25 3.09
2118 2180 4.569180 AACAGCGGCACACTGGCT 62.569 61.111 1.45 0.00 43.74 4.75
2119 2181 4.332637 CAACAGCGGCACACTGGC 62.333 66.667 1.45 0.00 43.74 4.85
2120 2182 3.663176 CCAACAGCGGCACACTGG 61.663 66.667 1.45 0.00 43.74 4.00
2121 2183 1.596752 TACCAACAGCGGCACACTG 60.597 57.895 1.45 0.00 45.17 3.66
2122 2184 1.597027 GTACCAACAGCGGCACACT 60.597 57.895 1.45 0.00 0.00 3.55
2123 2185 0.320073 TAGTACCAACAGCGGCACAC 60.320 55.000 1.45 0.00 0.00 3.82
2124 2186 0.393448 TTAGTACCAACAGCGGCACA 59.607 50.000 1.45 0.00 0.00 4.57
2125 2187 1.076332 CTTAGTACCAACAGCGGCAC 58.924 55.000 1.45 0.00 0.00 5.01
2126 2188 0.682852 ACTTAGTACCAACAGCGGCA 59.317 50.000 1.45 0.00 0.00 5.69
2127 2189 1.337447 TGACTTAGTACCAACAGCGGC 60.337 52.381 0.00 0.00 0.00 6.53
2128 2190 2.736144 TGACTTAGTACCAACAGCGG 57.264 50.000 0.00 0.00 0.00 5.52
2129 2191 2.993899 CCTTGACTTAGTACCAACAGCG 59.006 50.000 0.00 0.00 0.00 5.18
2130 2192 2.742589 GCCTTGACTTAGTACCAACAGC 59.257 50.000 0.00 0.00 0.00 4.40
2131 2193 4.002906 TGCCTTGACTTAGTACCAACAG 57.997 45.455 0.00 0.00 0.00 3.16
2132 2194 4.425180 TTGCCTTGACTTAGTACCAACA 57.575 40.909 0.00 0.00 0.00 3.33
2133 2195 5.001232 TGATTGCCTTGACTTAGTACCAAC 58.999 41.667 0.00 0.00 0.00 3.77
2134 2196 5.235850 TGATTGCCTTGACTTAGTACCAA 57.764 39.130 0.00 0.00 0.00 3.67
2135 2197 4.901197 TGATTGCCTTGACTTAGTACCA 57.099 40.909 0.00 0.00 0.00 3.25
2136 2198 5.449177 GCATTGATTGCCTTGACTTAGTACC 60.449 44.000 0.00 0.00 46.15 3.34
2137 2199 5.573146 GCATTGATTGCCTTGACTTAGTAC 58.427 41.667 0.00 0.00 46.15 2.73
2138 2200 5.818136 GCATTGATTGCCTTGACTTAGTA 57.182 39.130 0.00 0.00 46.15 1.82
2139 2201 4.708726 GCATTGATTGCCTTGACTTAGT 57.291 40.909 0.00 0.00 46.15 2.24
2151 2213 7.215719 ACATATCTCCATTCTGCATTGATTG 57.784 36.000 0.00 0.00 0.00 2.67
2152 2214 7.834881 AACATATCTCCATTCTGCATTGATT 57.165 32.000 0.00 0.00 0.00 2.57
2153 2215 8.162085 AGTAACATATCTCCATTCTGCATTGAT 58.838 33.333 0.00 0.00 0.00 2.57
2154 2216 7.512130 AGTAACATATCTCCATTCTGCATTGA 58.488 34.615 0.00 0.00 0.00 2.57
2155 2217 7.094890 GGAGTAACATATCTCCATTCTGCATTG 60.095 40.741 6.37 0.00 46.59 2.82
2156 2218 6.939163 GGAGTAACATATCTCCATTCTGCATT 59.061 38.462 6.37 0.00 46.59 3.56
2157 2219 6.471146 GGAGTAACATATCTCCATTCTGCAT 58.529 40.000 6.37 0.00 46.59 3.96
2158 2220 5.858381 GGAGTAACATATCTCCATTCTGCA 58.142 41.667 6.37 0.00 46.59 4.41
2172 2234 8.846211 CCACCAATTTTATATTCGGAGTAACAT 58.154 33.333 0.00 0.00 0.00 2.71
2173 2235 7.283580 CCCACCAATTTTATATTCGGAGTAACA 59.716 37.037 0.00 0.00 0.00 2.41
2174 2236 7.499895 TCCCACCAATTTTATATTCGGAGTAAC 59.500 37.037 0.00 0.00 0.00 2.50
2175 2237 7.575505 TCCCACCAATTTTATATTCGGAGTAA 58.424 34.615 0.00 0.00 0.00 2.24
2176 2238 7.071447 TCTCCCACCAATTTTATATTCGGAGTA 59.929 37.037 0.00 0.00 35.67 2.59
2177 2239 6.008696 TCCCACCAATTTTATATTCGGAGT 57.991 37.500 0.00 0.00 0.00 3.85
2178 2240 6.296026 TCTCCCACCAATTTTATATTCGGAG 58.704 40.000 0.00 0.00 35.53 4.63
2179 2241 6.255294 TCTCCCACCAATTTTATATTCGGA 57.745 37.500 0.00 0.00 0.00 4.55
2180 2242 5.473504 CCTCTCCCACCAATTTTATATTCGG 59.526 44.000 0.00 0.00 0.00 4.30
2181 2243 5.473504 CCCTCTCCCACCAATTTTATATTCG 59.526 44.000 0.00 0.00 0.00 3.34
2182 2244 5.775195 CCCCTCTCCCACCAATTTTATATTC 59.225 44.000 0.00 0.00 0.00 1.75
2183 2245 5.438386 TCCCCTCTCCCACCAATTTTATATT 59.562 40.000 0.00 0.00 0.00 1.28
2184 2246 4.988221 TCCCCTCTCCCACCAATTTTATAT 59.012 41.667 0.00 0.00 0.00 0.86
2185 2247 4.385386 TCCCCTCTCCCACCAATTTTATA 58.615 43.478 0.00 0.00 0.00 0.98
2186 2248 3.206464 TCCCCTCTCCCACCAATTTTAT 58.794 45.455 0.00 0.00 0.00 1.40
2187 2249 2.650013 TCCCCTCTCCCACCAATTTTA 58.350 47.619 0.00 0.00 0.00 1.52
2188 2250 1.466858 TCCCCTCTCCCACCAATTTT 58.533 50.000 0.00 0.00 0.00 1.82
2189 2251 1.466858 TTCCCCTCTCCCACCAATTT 58.533 50.000 0.00 0.00 0.00 1.82
2190 2252 1.077169 GTTTCCCCTCTCCCACCAATT 59.923 52.381 0.00 0.00 0.00 2.32
2191 2253 0.704664 GTTTCCCCTCTCCCACCAAT 59.295 55.000 0.00 0.00 0.00 3.16
2192 2254 0.699577 TGTTTCCCCTCTCCCACCAA 60.700 55.000 0.00 0.00 0.00 3.67
2193 2255 0.477597 ATGTTTCCCCTCTCCCACCA 60.478 55.000 0.00 0.00 0.00 4.17
2194 2256 0.034089 CATGTTTCCCCTCTCCCACC 60.034 60.000 0.00 0.00 0.00 4.61
2195 2257 0.034089 CCATGTTTCCCCTCTCCCAC 60.034 60.000 0.00 0.00 0.00 4.61
2196 2258 0.178846 TCCATGTTTCCCCTCTCCCA 60.179 55.000 0.00 0.00 0.00 4.37
2197 2259 0.256177 GTCCATGTTTCCCCTCTCCC 59.744 60.000 0.00 0.00 0.00 4.30
2198 2260 1.065126 CAGTCCATGTTTCCCCTCTCC 60.065 57.143 0.00 0.00 0.00 3.71
2199 2261 1.909302 TCAGTCCATGTTTCCCCTCTC 59.091 52.381 0.00 0.00 0.00 3.20
2200 2262 1.630878 GTCAGTCCATGTTTCCCCTCT 59.369 52.381 0.00 0.00 0.00 3.69
2201 2263 1.351017 TGTCAGTCCATGTTTCCCCTC 59.649 52.381 0.00 0.00 0.00 4.30
2202 2264 1.444933 TGTCAGTCCATGTTTCCCCT 58.555 50.000 0.00 0.00 0.00 4.79
2203 2265 2.094675 CATGTCAGTCCATGTTTCCCC 58.905 52.381 0.00 0.00 37.91 4.81
2204 2266 1.474077 GCATGTCAGTCCATGTTTCCC 59.526 52.381 0.00 0.00 43.33 3.97
2205 2267 2.095059 GTGCATGTCAGTCCATGTTTCC 60.095 50.000 0.00 0.00 43.33 3.13
2206 2268 2.816087 AGTGCATGTCAGTCCATGTTTC 59.184 45.455 0.00 0.00 43.33 2.78
2207 2269 2.555325 CAGTGCATGTCAGTCCATGTTT 59.445 45.455 0.00 0.00 43.33 2.83
2208 2270 2.156917 CAGTGCATGTCAGTCCATGTT 58.843 47.619 0.00 0.00 43.33 2.71
2209 2271 1.072806 ACAGTGCATGTCAGTCCATGT 59.927 47.619 0.00 0.00 43.33 3.21
2210 2272 1.817357 ACAGTGCATGTCAGTCCATG 58.183 50.000 0.00 0.00 44.07 3.66
2211 2273 2.574006 AACAGTGCATGTCAGTCCAT 57.426 45.000 0.00 0.00 43.00 3.41
2212 2274 2.346766 AAACAGTGCATGTCAGTCCA 57.653 45.000 0.00 0.00 43.00 4.02
2213 2275 3.058914 GTGTAAACAGTGCATGTCAGTCC 60.059 47.826 0.00 0.00 43.00 3.85
2214 2276 3.559655 TGTGTAAACAGTGCATGTCAGTC 59.440 43.478 0.00 0.00 43.00 3.51
2215 2277 3.540617 TGTGTAAACAGTGCATGTCAGT 58.459 40.909 0.00 0.00 43.00 3.41
2216 2278 4.213906 TGATGTGTAAACAGTGCATGTCAG 59.786 41.667 0.00 0.00 43.00 3.51
2217 2279 4.133078 TGATGTGTAAACAGTGCATGTCA 58.867 39.130 0.00 0.00 43.00 3.58
2218 2280 4.378770 CCTGATGTGTAAACAGTGCATGTC 60.379 45.833 0.00 0.00 43.00 3.06
2219 2281 3.503363 CCTGATGTGTAAACAGTGCATGT 59.497 43.478 0.00 0.00 46.97 3.21
2220 2282 3.671433 GCCTGATGTGTAAACAGTGCATG 60.671 47.826 0.00 0.00 32.48 4.06
2221 2283 2.489329 GCCTGATGTGTAAACAGTGCAT 59.511 45.455 0.00 0.00 32.48 3.96
2222 2284 1.879380 GCCTGATGTGTAAACAGTGCA 59.121 47.619 0.00 0.00 32.48 4.57
2223 2285 1.200020 GGCCTGATGTGTAAACAGTGC 59.800 52.381 0.00 0.00 0.00 4.40
2224 2286 2.783135 AGGCCTGATGTGTAAACAGTG 58.217 47.619 3.11 0.00 0.00 3.66
2225 2287 4.680708 CGATAGGCCTGATGTGTAAACAGT 60.681 45.833 17.99 0.00 0.00 3.55
2226 2288 3.804325 CGATAGGCCTGATGTGTAAACAG 59.196 47.826 17.99 0.00 0.00 3.16
2227 2289 3.196901 ACGATAGGCCTGATGTGTAAACA 59.803 43.478 17.99 0.00 43.77 2.83
2228 2290 3.793559 ACGATAGGCCTGATGTGTAAAC 58.206 45.455 17.99 0.00 43.77 2.01
2229 2291 4.054780 GACGATAGGCCTGATGTGTAAA 57.945 45.455 17.99 0.00 39.30 2.01
2230 2292 3.728076 GACGATAGGCCTGATGTGTAA 57.272 47.619 17.99 0.00 39.30 2.41
2249 2311 3.805066 TTCCCACATGTCAAATCCTGA 57.195 42.857 0.00 0.00 0.00 3.86
2250 2312 4.322198 CCTTTTCCCACATGTCAAATCCTG 60.322 45.833 0.00 0.00 0.00 3.86
2251 2313 3.834231 CCTTTTCCCACATGTCAAATCCT 59.166 43.478 0.00 0.00 0.00 3.24
2252 2314 3.831911 TCCTTTTCCCACATGTCAAATCC 59.168 43.478 0.00 0.00 0.00 3.01
2253 2315 4.766891 TCTCCTTTTCCCACATGTCAAATC 59.233 41.667 0.00 0.00 0.00 2.17
2254 2316 4.524328 GTCTCCTTTTCCCACATGTCAAAT 59.476 41.667 0.00 0.00 0.00 2.32
2255 2317 3.888930 GTCTCCTTTTCCCACATGTCAAA 59.111 43.478 0.00 0.00 0.00 2.69
2256 2318 3.117701 TGTCTCCTTTTCCCACATGTCAA 60.118 43.478 0.00 0.00 0.00 3.18
2257 2319 2.441375 TGTCTCCTTTTCCCACATGTCA 59.559 45.455 0.00 0.00 0.00 3.58
2258 2320 3.140325 TGTCTCCTTTTCCCACATGTC 57.860 47.619 0.00 0.00 0.00 3.06
2259 2321 3.490348 CTTGTCTCCTTTTCCCACATGT 58.510 45.455 0.00 0.00 0.00 3.21
2260 2322 2.229784 GCTTGTCTCCTTTTCCCACATG 59.770 50.000 0.00 0.00 0.00 3.21
2261 2323 2.158475 TGCTTGTCTCCTTTTCCCACAT 60.158 45.455 0.00 0.00 0.00 3.21
2262 2324 1.214175 TGCTTGTCTCCTTTTCCCACA 59.786 47.619 0.00 0.00 0.00 4.17
2263 2325 1.981256 TGCTTGTCTCCTTTTCCCAC 58.019 50.000 0.00 0.00 0.00 4.61
2264 2326 2.978156 ATGCTTGTCTCCTTTTCCCA 57.022 45.000 0.00 0.00 0.00 4.37
2265 2327 5.437060 TGTATATGCTTGTCTCCTTTTCCC 58.563 41.667 0.00 0.00 0.00 3.97
2266 2328 6.767902 TCATGTATATGCTTGTCTCCTTTTCC 59.232 38.462 6.59 0.00 34.21 3.13
2267 2329 7.792374 TCATGTATATGCTTGTCTCCTTTTC 57.208 36.000 6.59 0.00 34.21 2.29
2268 2330 8.757982 AATCATGTATATGCTTGTCTCCTTTT 57.242 30.769 6.59 0.00 34.21 2.27
2269 2331 8.757982 AAATCATGTATATGCTTGTCTCCTTT 57.242 30.769 6.59 0.29 34.21 3.11
2271 2333 9.445878 CATAAATCATGTATATGCTTGTCTCCT 57.554 33.333 6.59 0.00 34.21 3.69
2272 2334 9.440773 TCATAAATCATGTATATGCTTGTCTCC 57.559 33.333 6.59 0.00 35.96 3.71
2277 2339 9.783256 CCACATCATAAATCATGTATATGCTTG 57.217 33.333 0.89 0.89 35.96 4.01
2278 2340 9.524496 ACCACATCATAAATCATGTATATGCTT 57.476 29.630 0.00 0.00 35.96 3.91
2286 2348 9.494271 GTCTGTATACCACATCATAAATCATGT 57.506 33.333 0.00 0.00 36.29 3.21
2287 2349 9.716531 AGTCTGTATACCACATCATAAATCATG 57.283 33.333 0.00 0.00 36.29 3.07
2297 2359 9.694137 GGAGTATTTTAGTCTGTATACCACATC 57.306 37.037 0.00 0.00 36.29 3.06
2298 2360 9.435570 AGGAGTATTTTAGTCTGTATACCACAT 57.564 33.333 0.00 0.00 36.29 3.21
2299 2361 8.692710 CAGGAGTATTTTAGTCTGTATACCACA 58.307 37.037 0.00 0.00 35.30 4.17
2300 2362 7.652507 GCAGGAGTATTTTAGTCTGTATACCAC 59.347 40.741 0.00 0.00 0.00 4.16
2301 2363 7.201974 GGCAGGAGTATTTTAGTCTGTATACCA 60.202 40.741 0.00 0.00 0.00 3.25
2302 2364 7.015389 AGGCAGGAGTATTTTAGTCTGTATACC 59.985 40.741 0.00 0.00 0.00 2.73
2303 2365 7.953752 AGGCAGGAGTATTTTAGTCTGTATAC 58.046 38.462 0.00 0.00 0.00 1.47
2304 2366 8.548880 AAGGCAGGAGTATTTTAGTCTGTATA 57.451 34.615 0.00 0.00 0.00 1.47
2305 2367 7.125811 TGAAGGCAGGAGTATTTTAGTCTGTAT 59.874 37.037 0.00 0.00 0.00 2.29
2306 2368 6.439375 TGAAGGCAGGAGTATTTTAGTCTGTA 59.561 38.462 0.00 0.00 0.00 2.74
2307 2369 5.248477 TGAAGGCAGGAGTATTTTAGTCTGT 59.752 40.000 0.00 0.00 0.00 3.41
2308 2370 5.734720 TGAAGGCAGGAGTATTTTAGTCTG 58.265 41.667 0.00 0.00 0.00 3.51
2309 2371 6.156949 TGATGAAGGCAGGAGTATTTTAGTCT 59.843 38.462 0.00 0.00 0.00 3.24
2310 2372 6.349300 TGATGAAGGCAGGAGTATTTTAGTC 58.651 40.000 0.00 0.00 0.00 2.59
2311 2373 6.313519 TGATGAAGGCAGGAGTATTTTAGT 57.686 37.500 0.00 0.00 0.00 2.24
2312 2374 7.718753 AGATTGATGAAGGCAGGAGTATTTTAG 59.281 37.037 0.00 0.00 0.00 1.85
2313 2375 7.577303 AGATTGATGAAGGCAGGAGTATTTTA 58.423 34.615 0.00 0.00 0.00 1.52
2314 2376 6.430007 AGATTGATGAAGGCAGGAGTATTTT 58.570 36.000 0.00 0.00 0.00 1.82
2315 2377 6.011122 AGATTGATGAAGGCAGGAGTATTT 57.989 37.500 0.00 0.00 0.00 1.40
2316 2378 5.643421 AGATTGATGAAGGCAGGAGTATT 57.357 39.130 0.00 0.00 0.00 1.89
2317 2379 5.374921 CAAGATTGATGAAGGCAGGAGTAT 58.625 41.667 0.00 0.00 0.00 2.12
2318 2380 4.384537 CCAAGATTGATGAAGGCAGGAGTA 60.385 45.833 0.00 0.00 0.00 2.59
2319 2381 3.618351 CAAGATTGATGAAGGCAGGAGT 58.382 45.455 0.00 0.00 0.00 3.85
2320 2382 2.950309 CCAAGATTGATGAAGGCAGGAG 59.050 50.000 0.00 0.00 0.00 3.69
2321 2383 2.577563 TCCAAGATTGATGAAGGCAGGA 59.422 45.455 0.00 0.00 0.00 3.86
2322 2384 2.950309 CTCCAAGATTGATGAAGGCAGG 59.050 50.000 0.00 0.00 0.00 4.85
2323 2385 2.358267 GCTCCAAGATTGATGAAGGCAG 59.642 50.000 0.00 0.00 0.00 4.85
2324 2386 2.291089 TGCTCCAAGATTGATGAAGGCA 60.291 45.455 0.00 0.00 0.00 4.75
2325 2387 2.358267 CTGCTCCAAGATTGATGAAGGC 59.642 50.000 0.00 0.00 0.00 4.35
2326 2388 2.358267 GCTGCTCCAAGATTGATGAAGG 59.642 50.000 0.00 0.00 0.00 3.46
2327 2389 3.065510 CAGCTGCTCCAAGATTGATGAAG 59.934 47.826 0.00 0.00 0.00 3.02
2328 2390 3.014623 CAGCTGCTCCAAGATTGATGAA 58.985 45.455 0.00 0.00 0.00 2.57
2329 2391 2.237893 TCAGCTGCTCCAAGATTGATGA 59.762 45.455 9.47 0.00 0.00 2.92
2330 2392 2.614520 CTCAGCTGCTCCAAGATTGATG 59.385 50.000 9.47 0.00 0.00 3.07
2331 2393 2.239150 ACTCAGCTGCTCCAAGATTGAT 59.761 45.455 9.47 0.00 0.00 2.57
2332 2394 1.627329 ACTCAGCTGCTCCAAGATTGA 59.373 47.619 9.47 0.00 0.00 2.57
2333 2395 1.738350 CACTCAGCTGCTCCAAGATTG 59.262 52.381 9.47 0.00 0.00 2.67
2334 2396 1.339824 CCACTCAGCTGCTCCAAGATT 60.340 52.381 9.47 0.00 0.00 2.40
2335 2397 0.252479 CCACTCAGCTGCTCCAAGAT 59.748 55.000 9.47 0.00 0.00 2.40
2336 2398 1.123861 ACCACTCAGCTGCTCCAAGA 61.124 55.000 9.47 0.00 0.00 3.02
2337 2399 0.673022 GACCACTCAGCTGCTCCAAG 60.673 60.000 9.47 2.99 0.00 3.61
2338 2400 1.372683 GACCACTCAGCTGCTCCAA 59.627 57.895 9.47 0.00 0.00 3.53
2339 2401 2.587247 GGACCACTCAGCTGCTCCA 61.587 63.158 9.47 0.00 0.00 3.86
2340 2402 2.267324 GGACCACTCAGCTGCTCC 59.733 66.667 9.47 3.78 0.00 4.70
2341 2403 1.079266 CAGGACCACTCAGCTGCTC 60.079 63.158 9.47 0.00 0.00 4.26
2342 2404 0.908656 ATCAGGACCACTCAGCTGCT 60.909 55.000 9.47 0.00 0.00 4.24
2343 2405 0.826715 TATCAGGACCACTCAGCTGC 59.173 55.000 9.47 0.00 0.00 5.25
2344 2406 4.148079 TCTATATCAGGACCACTCAGCTG 58.852 47.826 7.63 7.63 0.00 4.24
2345 2407 4.105537 TCTCTATATCAGGACCACTCAGCT 59.894 45.833 0.00 0.00 0.00 4.24
2346 2408 4.402829 TCTCTATATCAGGACCACTCAGC 58.597 47.826 0.00 0.00 0.00 4.26
2347 2409 4.458989 GCTCTCTATATCAGGACCACTCAG 59.541 50.000 0.00 0.00 0.00 3.35
2348 2410 4.141158 TGCTCTCTATATCAGGACCACTCA 60.141 45.833 0.00 0.00 0.00 3.41
2349 2411 4.402829 TGCTCTCTATATCAGGACCACTC 58.597 47.826 0.00 0.00 0.00 3.51
2350 2412 4.406456 CTGCTCTCTATATCAGGACCACT 58.594 47.826 0.00 0.00 0.00 4.00
2351 2413 3.056891 GCTGCTCTCTATATCAGGACCAC 60.057 52.174 0.00 0.00 0.00 4.16
2352 2414 3.161067 GCTGCTCTCTATATCAGGACCA 58.839 50.000 0.00 0.00 0.00 4.02
2353 2415 3.193267 CAGCTGCTCTCTATATCAGGACC 59.807 52.174 0.00 0.00 0.00 4.46
2354 2416 4.078537 TCAGCTGCTCTCTATATCAGGAC 58.921 47.826 9.47 0.00 0.00 3.85
2355 2417 4.334552 CTCAGCTGCTCTCTATATCAGGA 58.665 47.826 9.47 0.00 0.00 3.86
2356 2418 3.119388 GCTCAGCTGCTCTCTATATCAGG 60.119 52.174 9.47 0.00 0.00 3.86
2357 2419 3.760151 AGCTCAGCTGCTCTCTATATCAG 59.240 47.826 9.47 0.00 39.34 2.90
2358 2420 3.765381 AGCTCAGCTGCTCTCTATATCA 58.235 45.455 9.47 0.00 39.34 2.15
2377 2439 6.783963 GGATATCCAATATGGCTCCCGAGC 62.784 54.167 17.34 8.23 44.00 5.03
2378 2440 3.181461 GGATATCCAATATGGCTCCCGAG 60.181 52.174 17.34 0.00 37.47 4.63
2379 2441 2.771943 GGATATCCAATATGGCTCCCGA 59.228 50.000 17.34 0.00 37.47 5.14
2380 2442 2.158755 GGGATATCCAATATGGCTCCCG 60.159 54.545 23.27 0.00 39.20 5.14
2381 2443 2.158755 CGGGATATCCAATATGGCTCCC 60.159 54.545 23.27 15.82 42.32 4.30
2382 2444 2.505819 ACGGGATATCCAATATGGCTCC 59.494 50.000 23.27 0.93 37.47 4.70
2383 2445 3.197766 TGACGGGATATCCAATATGGCTC 59.802 47.826 23.27 1.65 37.47 4.70
2384 2446 3.181329 TGACGGGATATCCAATATGGCT 58.819 45.455 23.27 0.00 37.47 4.75
2385 2447 3.627395 TGACGGGATATCCAATATGGC 57.373 47.619 23.27 9.65 37.47 4.40
2386 2448 5.102953 ACATGACGGGATATCCAATATGG 57.897 43.478 23.27 10.48 39.43 2.74
2387 2449 6.623549 GCAAACATGACGGGATATCCAATATG 60.624 42.308 23.27 20.27 37.91 1.78
2388 2450 5.415701 GCAAACATGACGGGATATCCAATAT 59.584 40.000 23.27 8.82 37.91 1.28
2389 2451 4.759693 GCAAACATGACGGGATATCCAATA 59.240 41.667 23.27 6.87 37.91 1.90
2390 2452 3.569701 GCAAACATGACGGGATATCCAAT 59.430 43.478 23.27 10.32 37.91 3.16
2391 2453 2.948979 GCAAACATGACGGGATATCCAA 59.051 45.455 23.27 6.15 37.91 3.53
2392 2454 2.571212 GCAAACATGACGGGATATCCA 58.429 47.619 23.27 2.85 37.91 3.41
2393 2455 1.880027 GGCAAACATGACGGGATATCC 59.120 52.381 13.87 13.87 0.00 2.59
2394 2456 2.851195 AGGCAAACATGACGGGATATC 58.149 47.619 0.00 0.00 0.00 1.63
2395 2457 3.297134 AAGGCAAACATGACGGGATAT 57.703 42.857 0.00 0.00 0.00 1.63
2396 2458 2.799126 AAGGCAAACATGACGGGATA 57.201 45.000 0.00 0.00 0.00 2.59
2397 2459 1.923356 AAAGGCAAACATGACGGGAT 58.077 45.000 0.00 0.00 0.00 3.85
2398 2460 1.339610 CAAAAGGCAAACATGACGGGA 59.660 47.619 0.00 0.00 0.00 5.14
2399 2461 1.068434 ACAAAAGGCAAACATGACGGG 59.932 47.619 0.00 0.00 0.00 5.28
2400 2462 2.507339 ACAAAAGGCAAACATGACGG 57.493 45.000 0.00 0.00 0.00 4.79
2401 2463 3.958704 TGTACAAAAGGCAAACATGACG 58.041 40.909 0.00 0.00 0.00 4.35
2402 2464 4.037446 TCCTGTACAAAAGGCAAACATGAC 59.963 41.667 0.00 0.00 34.56 3.06
2411 2473 3.352648 TGCCTATTCCTGTACAAAAGGC 58.647 45.455 19.19 19.19 46.52 4.35
2470 2533 6.569127 TTGCATGGAAGGAGTATTTACCTA 57.431 37.500 0.00 0.00 35.25 3.08
2662 5207 3.563808 GCCATCAACAATAGCGTGGAATA 59.436 43.478 0.00 0.00 0.00 1.75
2782 5343 0.540923 GCTGAAGGGAGAGACATGCT 59.459 55.000 0.00 0.00 0.00 3.79
2976 5544 7.497579 ACAAATTGAACCCAAATCCAAAGTTAC 59.502 33.333 0.00 0.00 35.67 2.50
3139 5713 0.901124 TGTTATGCCCCAACCATTGC 59.099 50.000 0.00 0.00 0.00 3.56
3164 7635 7.801716 TGTTAATTTATAAGCTCGCCTGATT 57.198 32.000 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.