Multiple sequence alignment - TraesCS3B01G230800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G230800 chr3B 100.000 6361 0 0 1 6361 348104075 348110435 0.000000e+00 11747
1 TraesCS3B01G230800 chr3B 95.508 423 11 1 5754 6168 348115330 348115752 0.000000e+00 669
2 TraesCS3B01G230800 chr3B 89.412 85 6 2 5541 5625 132133730 132133649 3.140000e-18 104
3 TraesCS3B01G230800 chr3A 97.935 2809 40 11 773 3576 269391495 269394290 0.000000e+00 4850
4 TraesCS3B01G230800 chr3A 97.481 1469 31 2 4073 5541 269394865 269396327 0.000000e+00 2503
5 TraesCS3B01G230800 chr3A 88.979 617 54 10 5754 6359 505715086 505714473 0.000000e+00 750
6 TraesCS3B01G230800 chr3A 90.123 486 42 4 1 484 269391012 269391493 1.510000e-175 627
7 TraesCS3B01G230800 chr3A 89.202 426 32 11 5754 6168 505709606 505709184 2.630000e-143 520
8 TraesCS3B01G230800 chr3A 95.946 296 11 1 3862 4157 269394570 269394864 4.460000e-131 479
9 TraesCS3B01G230800 chr3A 95.122 205 9 1 3611 3814 269394370 269394574 7.960000e-84 322
10 TraesCS3B01G230800 chr3D 97.438 2810 39 11 773 3576 248533648 248536430 0.000000e+00 4759
11 TraesCS3B01G230800 chr3D 95.676 1665 50 7 3887 5541 248536683 248538335 0.000000e+00 2656
12 TraesCS3B01G230800 chr3D 93.182 484 32 1 1 484 248533164 248533646 0.000000e+00 710
13 TraesCS3B01G230800 chr3D 91.837 294 23 1 484 776 240482526 240482819 5.940000e-110 409
14 TraesCS3B01G230800 chr3D 95.531 179 7 1 3606 3783 248536505 248536683 1.040000e-72 285
15 TraesCS3B01G230800 chr6B 93.506 616 32 2 5754 6361 337843082 337842467 0.000000e+00 909
16 TraesCS3B01G230800 chr6B 92.199 423 25 2 5754 6168 337837569 337837147 5.490000e-165 592
17 TraesCS3B01G230800 chr6B 91.468 293 24 1 484 775 508150955 508151247 9.930000e-108 401
18 TraesCS3B01G230800 chr6B 91.186 295 25 1 477 770 191444484 191444190 3.570000e-107 399
19 TraesCS3B01G230800 chr6B 89.524 210 13 3 5754 5956 387156922 387156715 2.280000e-64 257
20 TraesCS3B01G230800 chr6B 95.062 81 4 0 5545 5625 433830841 433830761 1.860000e-25 128
21 TraesCS3B01G230800 chr2B 91.071 616 46 7 5754 6361 235596861 235596247 0.000000e+00 824
22 TraesCS3B01G230800 chr2B 89.835 423 34 7 5754 6168 235587560 235587139 9.390000e-148 534
23 TraesCS3B01G230800 chr5B 89.338 619 51 12 5754 6361 190581318 190580704 0.000000e+00 763
24 TraesCS3B01G230800 chr5B 88.180 423 36 7 5754 6166 190575813 190575395 5.730000e-135 492
25 TraesCS3B01G230800 chr5B 92.230 296 19 4 484 776 527377128 527377422 3.550000e-112 416
26 TraesCS3B01G230800 chr5B 91.186 295 24 2 484 776 214535774 214535480 3.570000e-107 399
27 TraesCS3B01G230800 chr4D 84.863 621 76 10 5754 6361 350259467 350260082 1.520000e-170 610
28 TraesCS3B01G230800 chr2D 85.401 548 61 11 5829 6361 190355702 190356245 9.320000e-153 551
29 TraesCS3B01G230800 chr2D 93.151 73 4 1 3580 3651 451974331 451974403 8.720000e-19 106
30 TraesCS3B01G230800 chr7A 95.357 280 13 0 491 770 189351706 189351427 4.520000e-121 446
31 TraesCS3B01G230800 chr7A 87.912 91 11 0 5535 5625 706672011 706671921 2.430000e-19 108
32 TraesCS3B01G230800 chr7A 87.912 91 3 7 3562 3651 350571876 350571793 4.060000e-17 100
33 TraesCS3B01G230800 chr1D 91.781 292 23 1 485 775 469385072 469385363 7.680000e-109 405
34 TraesCS3B01G230800 chr1D 94.286 70 3 1 3580 3648 28960927 28960996 8.720000e-19 106
35 TraesCS3B01G230800 chr7B 91.497 294 24 1 484 776 518193842 518193549 2.760000e-108 403
36 TraesCS3B01G230800 chr4B 90.260 308 27 3 471 776 328582018 328582324 3.570000e-107 399
37 TraesCS3B01G230800 chr1A 98.592 71 1 0 5546 5616 556958434 556958504 6.690000e-25 126
38 TraesCS3B01G230800 chr1A 92.105 76 4 2 3581 3655 152464175 152464101 8.720000e-19 106
39 TraesCS3B01G230800 chrUn 91.566 83 5 2 3573 3654 108661204 108661285 5.210000e-21 113
40 TraesCS3B01G230800 chr7D 88.172 93 8 3 3560 3651 135026338 135026248 2.430000e-19 108
41 TraesCS3B01G230800 chr5A 90.244 82 3 3 3572 3652 321667564 321667487 1.130000e-17 102


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G230800 chr3B 348104075 348110435 6360 False 11747.0 11747 100.00000 1 6361 1 chr3B.!!$F1 6360
1 TraesCS3B01G230800 chr3A 269391012 269396327 5315 False 1756.2 4850 95.32140 1 5541 5 chr3A.!!$F1 5540
2 TraesCS3B01G230800 chr3A 505714473 505715086 613 True 750.0 750 88.97900 5754 6359 1 chr3A.!!$R2 605
3 TraesCS3B01G230800 chr3D 248533164 248538335 5171 False 2102.5 4759 95.45675 1 5541 4 chr3D.!!$F2 5540
4 TraesCS3B01G230800 chr6B 337842467 337843082 615 True 909.0 909 93.50600 5754 6361 1 chr6B.!!$R3 607
5 TraesCS3B01G230800 chr2B 235596247 235596861 614 True 824.0 824 91.07100 5754 6361 1 chr2B.!!$R2 607
6 TraesCS3B01G230800 chr5B 190580704 190581318 614 True 763.0 763 89.33800 5754 6361 1 chr5B.!!$R2 607
7 TraesCS3B01G230800 chr4D 350259467 350260082 615 False 610.0 610 84.86300 5754 6361 1 chr4D.!!$F1 607
8 TraesCS3B01G230800 chr2D 190355702 190356245 543 False 551.0 551 85.40100 5829 6361 1 chr2D.!!$F1 532

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
293 294 0.032952 GCCACGAGCGATAATACCCA 59.967 55.0 0.0 0.0 0.00 4.51 F
486 487 0.035820 CCGCTTGCAACCTACCCTAA 60.036 55.0 0.0 0.0 0.00 2.69 F
642 643 0.106769 TCACAAAGTGCCCAAGAGCA 60.107 50.0 0.0 0.0 41.46 4.26 F
678 679 0.108804 CTTCACGAAGAGCCCGCTTA 60.109 55.0 0.2 0.0 40.79 3.09 F
982 986 0.314302 CCGGAGACTAGGTATTGGCG 59.686 60.0 0.0 0.0 0.00 5.69 F
2522 2531 0.393808 TCGGGTATTTGCTTCCTGGC 60.394 55.0 0.0 0.0 0.00 4.85 F
3852 3913 0.108041 CATGTTCATGCCCCTTTGCC 60.108 55.0 0.0 0.0 0.00 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2087 2096 1.479323 CCATTGGTCAGGCATTTGGAG 59.521 52.381 0.00 0.00 0.00 3.86 R
2092 2101 1.620524 CCCTTCCATTGGTCAGGCATT 60.621 52.381 14.86 0.00 0.00 3.56 R
2239 2248 7.903995 AAACAACAAAGAATCAACAATGTGT 57.096 28.000 0.00 0.00 0.00 3.72 R
2270 2279 8.554870 TCCCACTGAAACTCTAGTTACTCTATA 58.445 37.037 0.00 0.00 37.25 1.31 R
2704 2713 5.251764 AGACCAAGAACAAAGGATCAGATG 58.748 41.667 0.00 0.00 0.00 2.90 R
3860 3921 0.030638 AAATGGCGGCGCATATGAAC 59.969 50.000 34.36 14.73 0.00 3.18 R
5576 5738 0.109458 CGACCGGTCTGACGAAATCA 60.109 55.000 30.92 0.00 35.47 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 5.301805 ACCAACAGGAGAAAAACGATGAAAT 59.698 36.000 0.00 0.00 0.00 2.17
39 40 8.020819 GGAGAAAAACGATGAAATTGACATACA 58.979 33.333 0.00 0.00 0.00 2.29
62 63 1.305219 CCAATGAAAAGAGGCGGCGA 61.305 55.000 12.98 0.00 0.00 5.54
78 79 0.955428 GCGATGCAGGGAAGAACACA 60.955 55.000 0.00 0.00 0.00 3.72
108 109 9.549078 TGGAGGAACAATAATTTTGGTTAAAAC 57.451 29.630 0.00 0.00 38.50 2.43
112 113 9.110502 GGAACAATAATTTTGGTTAAAACACCA 57.889 29.630 0.00 0.00 45.68 4.17
170 171 2.172851 AACCGCGAAAGTGATAACCA 57.827 45.000 8.23 0.00 46.66 3.67
204 205 0.692419 ATCGCCTCTCCTTCCACCAT 60.692 55.000 0.00 0.00 0.00 3.55
251 252 1.583967 CTCCTCGACATGCGACGTC 60.584 63.158 5.18 5.18 45.59 4.34
293 294 0.032952 GCCACGAGCGATAATACCCA 59.967 55.000 0.00 0.00 0.00 4.51
325 326 7.884354 ACCATTTAAGTAGTTATTTCGGTTCCA 59.116 33.333 0.00 0.00 0.00 3.53
484 485 2.185310 CTCCGCTTGCAACCTACCCT 62.185 60.000 0.00 0.00 0.00 4.34
485 486 0.905809 TCCGCTTGCAACCTACCCTA 60.906 55.000 0.00 0.00 0.00 3.53
486 487 0.035820 CCGCTTGCAACCTACCCTAA 60.036 55.000 0.00 0.00 0.00 2.69
487 488 1.612199 CCGCTTGCAACCTACCCTAAA 60.612 52.381 0.00 0.00 0.00 1.85
488 489 2.156098 CGCTTGCAACCTACCCTAAAA 58.844 47.619 0.00 0.00 0.00 1.52
489 490 2.554893 CGCTTGCAACCTACCCTAAAAA 59.445 45.455 0.00 0.00 0.00 1.94
490 491 3.610821 CGCTTGCAACCTACCCTAAAAAC 60.611 47.826 0.00 0.00 0.00 2.43
491 492 3.319689 GCTTGCAACCTACCCTAAAAACA 59.680 43.478 0.00 0.00 0.00 2.83
492 493 4.021456 GCTTGCAACCTACCCTAAAAACAT 60.021 41.667 0.00 0.00 0.00 2.71
493 494 5.461032 TTGCAACCTACCCTAAAAACATG 57.539 39.130 0.00 0.00 0.00 3.21
494 495 3.829601 TGCAACCTACCCTAAAAACATGG 59.170 43.478 0.00 0.00 0.00 3.66
495 496 3.830178 GCAACCTACCCTAAAAACATGGT 59.170 43.478 0.00 0.00 34.85 3.55
496 497 4.282449 GCAACCTACCCTAAAAACATGGTT 59.718 41.667 0.00 0.00 37.06 3.67
497 498 5.477637 GCAACCTACCCTAAAAACATGGTTA 59.522 40.000 0.00 0.00 35.16 2.85
498 499 6.015265 GCAACCTACCCTAAAAACATGGTTAA 60.015 38.462 0.00 0.00 35.16 2.01
499 500 7.310175 GCAACCTACCCTAAAAACATGGTTAAT 60.310 37.037 0.00 0.00 35.16 1.40
500 501 9.245481 CAACCTACCCTAAAAACATGGTTAATA 57.755 33.333 0.00 0.00 35.16 0.98
501 502 9.470399 AACCTACCCTAAAAACATGGTTAATAG 57.530 33.333 0.00 2.85 35.16 1.73
502 503 8.617491 ACCTACCCTAAAAACATGGTTAATAGT 58.383 33.333 0.00 0.00 32.27 2.12
511 512 7.745620 AAACATGGTTAATAGTATAGCCAGC 57.254 36.000 0.00 0.00 39.18 4.85
512 513 6.688073 ACATGGTTAATAGTATAGCCAGCT 57.312 37.500 0.00 0.00 39.18 4.24
513 514 6.467677 ACATGGTTAATAGTATAGCCAGCTG 58.532 40.000 6.78 6.78 39.18 4.24
514 515 4.894784 TGGTTAATAGTATAGCCAGCTGC 58.105 43.478 8.66 3.91 41.71 5.25
526 527 1.312815 CCAGCTGCTGGTTATAAGCC 58.687 55.000 35.03 4.92 45.82 4.35
527 528 1.408683 CCAGCTGCTGGTTATAAGCCA 60.409 52.381 35.03 8.92 45.82 4.75
533 534 2.418368 CTGGTTATAAGCCAGTGCCA 57.582 50.000 18.55 7.07 46.22 4.92
534 535 2.936202 CTGGTTATAAGCCAGTGCCAT 58.064 47.619 18.55 0.00 46.22 4.40
535 536 2.620115 CTGGTTATAAGCCAGTGCCATG 59.380 50.000 18.55 0.00 46.22 3.66
536 537 2.025416 TGGTTATAAGCCAGTGCCATGT 60.025 45.455 11.96 0.00 38.69 3.21
537 538 2.618709 GGTTATAAGCCAGTGCCATGTC 59.381 50.000 3.16 0.00 38.69 3.06
538 539 3.278574 GTTATAAGCCAGTGCCATGTCA 58.721 45.455 0.00 0.00 38.69 3.58
539 540 2.742428 ATAAGCCAGTGCCATGTCAT 57.258 45.000 0.00 0.00 38.69 3.06
540 541 2.512692 TAAGCCAGTGCCATGTCATT 57.487 45.000 0.00 0.00 38.69 2.57
541 542 1.636148 AAGCCAGTGCCATGTCATTT 58.364 45.000 0.00 0.00 38.69 2.32
542 543 2.512692 AGCCAGTGCCATGTCATTTA 57.487 45.000 0.00 0.00 38.69 1.40
543 544 2.094675 AGCCAGTGCCATGTCATTTAC 58.905 47.619 0.00 0.00 38.69 2.01
544 545 1.818060 GCCAGTGCCATGTCATTTACA 59.182 47.619 0.00 0.00 43.86 2.41
545 546 2.159338 GCCAGTGCCATGTCATTTACAG 60.159 50.000 0.00 0.00 42.70 2.74
546 547 2.159338 CCAGTGCCATGTCATTTACAGC 60.159 50.000 0.00 0.00 42.70 4.40
547 548 2.751259 CAGTGCCATGTCATTTACAGCT 59.249 45.455 0.00 0.00 42.70 4.24
548 549 3.012518 AGTGCCATGTCATTTACAGCTC 58.987 45.455 0.00 0.00 42.70 4.09
549 550 2.749076 GTGCCATGTCATTTACAGCTCA 59.251 45.455 0.00 0.00 42.70 4.26
550 551 3.379372 GTGCCATGTCATTTACAGCTCAT 59.621 43.478 0.00 0.00 42.70 2.90
551 552 4.018490 TGCCATGTCATTTACAGCTCATT 58.982 39.130 0.00 0.00 42.70 2.57
552 553 4.463539 TGCCATGTCATTTACAGCTCATTT 59.536 37.500 0.00 0.00 42.70 2.32
553 554 5.047164 TGCCATGTCATTTACAGCTCATTTT 60.047 36.000 0.00 0.00 42.70 1.82
554 555 6.152492 TGCCATGTCATTTACAGCTCATTTTA 59.848 34.615 0.00 0.00 42.70 1.52
555 556 7.147863 TGCCATGTCATTTACAGCTCATTTTAT 60.148 33.333 0.00 0.00 42.70 1.40
556 557 8.352201 GCCATGTCATTTACAGCTCATTTTATA 58.648 33.333 0.00 0.00 42.70 0.98
557 558 9.888878 CCATGTCATTTACAGCTCATTTTATAG 57.111 33.333 0.00 0.00 42.70 1.31
560 561 9.665719 TGTCATTTACAGCTCATTTTATAGTCA 57.334 29.630 0.00 0.00 33.01 3.41
566 567 7.928307 ACAGCTCATTTTATAGTCAACATGT 57.072 32.000 0.00 0.00 0.00 3.21
568 569 8.883731 ACAGCTCATTTTATAGTCAACATGTAC 58.116 33.333 0.00 0.00 0.00 2.90
569 570 8.882736 CAGCTCATTTTATAGTCAACATGTACA 58.117 33.333 0.00 0.00 0.00 2.90
570 571 9.448438 AGCTCATTTTATAGTCAACATGTACAA 57.552 29.630 0.00 0.00 0.00 2.41
609 610 8.488651 AGTGTACTACTGTTTTATTATGTGGC 57.511 34.615 0.00 0.00 38.49 5.01
610 611 7.551617 AGTGTACTACTGTTTTATTATGTGGCC 59.448 37.037 0.00 0.00 38.49 5.36
611 612 6.824704 TGTACTACTGTTTTATTATGTGGCCC 59.175 38.462 0.00 0.00 0.00 5.80
612 613 5.822204 ACTACTGTTTTATTATGTGGCCCA 58.178 37.500 0.00 0.00 0.00 5.36
613 614 5.650703 ACTACTGTTTTATTATGTGGCCCAC 59.349 40.000 7.01 7.01 34.56 4.61
614 615 3.767131 ACTGTTTTATTATGTGGCCCACC 59.233 43.478 12.25 0.00 32.73 4.61
615 616 4.023291 CTGTTTTATTATGTGGCCCACCT 58.977 43.478 12.25 3.78 36.63 4.00
616 617 4.421131 TGTTTTATTATGTGGCCCACCTT 58.579 39.130 12.25 1.15 36.63 3.50
617 618 4.841246 TGTTTTATTATGTGGCCCACCTTT 59.159 37.500 12.25 0.00 36.63 3.11
618 619 5.308237 TGTTTTATTATGTGGCCCACCTTTT 59.692 36.000 12.25 0.00 36.63 2.27
619 620 6.497259 TGTTTTATTATGTGGCCCACCTTTTA 59.503 34.615 12.25 0.00 36.63 1.52
620 621 7.181125 TGTTTTATTATGTGGCCCACCTTTTAT 59.819 33.333 12.25 0.00 36.63 1.40
621 622 7.741554 TTTATTATGTGGCCCACCTTTTATT 57.258 32.000 12.25 0.00 36.63 1.40
622 623 5.869649 ATTATGTGGCCCACCTTTTATTC 57.130 39.130 12.25 0.00 36.63 1.75
623 624 2.990740 TGTGGCCCACCTTTTATTCT 57.009 45.000 12.25 0.00 36.63 2.40
624 625 2.802719 TGTGGCCCACCTTTTATTCTC 58.197 47.619 12.25 0.00 36.63 2.87
625 626 2.109128 TGTGGCCCACCTTTTATTCTCA 59.891 45.455 12.25 0.00 36.63 3.27
626 627 2.492088 GTGGCCCACCTTTTATTCTCAC 59.508 50.000 1.17 0.00 36.63 3.51
627 628 2.109128 TGGCCCACCTTTTATTCTCACA 59.891 45.455 0.00 0.00 36.63 3.58
628 629 3.161866 GGCCCACCTTTTATTCTCACAA 58.838 45.455 0.00 0.00 0.00 3.33
629 630 3.576550 GGCCCACCTTTTATTCTCACAAA 59.423 43.478 0.00 0.00 0.00 2.83
630 631 4.321974 GGCCCACCTTTTATTCTCACAAAG 60.322 45.833 0.00 0.00 0.00 2.77
631 632 4.280929 GCCCACCTTTTATTCTCACAAAGT 59.719 41.667 0.00 0.00 0.00 2.66
632 633 5.772521 CCCACCTTTTATTCTCACAAAGTG 58.227 41.667 0.00 0.00 34.45 3.16
633 634 5.222631 CCACCTTTTATTCTCACAAAGTGC 58.777 41.667 0.00 0.00 32.98 4.40
634 635 5.222631 CACCTTTTATTCTCACAAAGTGCC 58.777 41.667 0.00 0.00 32.98 5.01
635 636 4.280929 ACCTTTTATTCTCACAAAGTGCCC 59.719 41.667 0.00 0.00 32.98 5.36
636 637 4.280677 CCTTTTATTCTCACAAAGTGCCCA 59.719 41.667 0.00 0.00 32.98 5.36
637 638 5.221422 CCTTTTATTCTCACAAAGTGCCCAA 60.221 40.000 0.00 0.00 32.98 4.12
638 639 5.452078 TTTATTCTCACAAAGTGCCCAAG 57.548 39.130 0.00 0.00 32.98 3.61
639 640 2.727123 TTCTCACAAAGTGCCCAAGA 57.273 45.000 0.00 0.00 32.98 3.02
640 641 2.260844 TCTCACAAAGTGCCCAAGAG 57.739 50.000 0.00 0.00 32.98 2.85
641 642 0.595095 CTCACAAAGTGCCCAAGAGC 59.405 55.000 0.00 0.00 32.98 4.09
642 643 0.106769 TCACAAAGTGCCCAAGAGCA 60.107 50.000 0.00 0.00 41.46 4.26
657 658 2.781300 GCACGTGCTTGAGCTAGC 59.219 61.111 32.55 6.62 42.66 3.42
658 659 1.739562 GCACGTGCTTGAGCTAGCT 60.740 57.895 32.55 19.45 41.76 3.32
659 660 1.691215 GCACGTGCTTGAGCTAGCTC 61.691 60.000 33.47 33.47 41.76 4.09
660 661 0.108898 CACGTGCTTGAGCTAGCTCT 60.109 55.000 37.42 18.52 43.12 4.09
661 662 0.605589 ACGTGCTTGAGCTAGCTCTT 59.394 50.000 37.42 10.60 43.12 2.85
662 663 1.276415 CGTGCTTGAGCTAGCTCTTC 58.724 55.000 37.42 26.96 43.12 2.87
663 664 1.403382 CGTGCTTGAGCTAGCTCTTCA 60.403 52.381 37.42 28.74 43.12 3.02
664 665 1.999024 GTGCTTGAGCTAGCTCTTCAC 59.001 52.381 37.42 32.98 43.12 3.18
665 666 1.276415 GCTTGAGCTAGCTCTTCACG 58.724 55.000 37.42 21.36 43.12 4.35
666 667 1.135257 GCTTGAGCTAGCTCTTCACGA 60.135 52.381 37.42 19.20 43.12 4.35
667 668 2.672478 GCTTGAGCTAGCTCTTCACGAA 60.672 50.000 37.42 24.10 43.12 3.85
668 669 2.929531 TGAGCTAGCTCTTCACGAAG 57.070 50.000 37.42 0.08 43.12 3.79
669 670 2.437413 TGAGCTAGCTCTTCACGAAGA 58.563 47.619 37.42 17.15 44.47 2.87
675 676 2.261671 TCTTCACGAAGAGCCCGC 59.738 61.111 5.38 0.00 42.06 6.13
676 677 2.262915 CTTCACGAAGAGCCCGCT 59.737 61.111 0.20 0.00 40.79 5.52
677 678 1.374758 CTTCACGAAGAGCCCGCTT 60.375 57.895 0.20 0.00 40.79 4.68
678 679 0.108804 CTTCACGAAGAGCCCGCTTA 60.109 55.000 0.20 0.00 40.79 3.09
679 680 0.389426 TTCACGAAGAGCCCGCTTAC 60.389 55.000 0.00 0.00 0.00 2.34
680 681 1.810030 CACGAAGAGCCCGCTTACC 60.810 63.158 0.00 0.00 0.00 2.85
681 682 1.982938 ACGAAGAGCCCGCTTACCT 60.983 57.895 0.00 0.00 0.00 3.08
682 683 1.218316 CGAAGAGCCCGCTTACCTT 59.782 57.895 0.00 0.00 0.00 3.50
683 684 0.391263 CGAAGAGCCCGCTTACCTTT 60.391 55.000 0.00 0.00 0.00 3.11
684 685 1.822506 GAAGAGCCCGCTTACCTTTT 58.177 50.000 0.00 0.00 0.00 2.27
685 686 1.738350 GAAGAGCCCGCTTACCTTTTC 59.262 52.381 0.00 0.00 0.00 2.29
686 687 0.984995 AGAGCCCGCTTACCTTTTCT 59.015 50.000 0.00 0.00 0.00 2.52
687 688 1.066071 AGAGCCCGCTTACCTTTTCTC 60.066 52.381 0.00 0.00 0.00 2.87
688 689 0.690762 AGCCCGCTTACCTTTTCTCA 59.309 50.000 0.00 0.00 0.00 3.27
689 690 0.803117 GCCCGCTTACCTTTTCTCAC 59.197 55.000 0.00 0.00 0.00 3.51
690 691 1.450025 CCCGCTTACCTTTTCTCACC 58.550 55.000 0.00 0.00 0.00 4.02
691 692 1.003233 CCCGCTTACCTTTTCTCACCT 59.997 52.381 0.00 0.00 0.00 4.00
692 693 2.347731 CCGCTTACCTTTTCTCACCTC 58.652 52.381 0.00 0.00 0.00 3.85
693 694 2.028020 CCGCTTACCTTTTCTCACCTCT 60.028 50.000 0.00 0.00 0.00 3.69
694 695 3.557264 CCGCTTACCTTTTCTCACCTCTT 60.557 47.826 0.00 0.00 0.00 2.85
695 696 3.680458 CGCTTACCTTTTCTCACCTCTTC 59.320 47.826 0.00 0.00 0.00 2.87
696 697 4.561734 CGCTTACCTTTTCTCACCTCTTCT 60.562 45.833 0.00 0.00 0.00 2.85
697 698 4.932799 GCTTACCTTTTCTCACCTCTTCTC 59.067 45.833 0.00 0.00 0.00 2.87
698 699 5.279758 GCTTACCTTTTCTCACCTCTTCTCT 60.280 44.000 0.00 0.00 0.00 3.10
699 700 6.742926 GCTTACCTTTTCTCACCTCTTCTCTT 60.743 42.308 0.00 0.00 0.00 2.85
700 701 5.638530 ACCTTTTCTCACCTCTTCTCTTT 57.361 39.130 0.00 0.00 0.00 2.52
701 702 5.616270 ACCTTTTCTCACCTCTTCTCTTTC 58.384 41.667 0.00 0.00 0.00 2.62
702 703 5.000591 CCTTTTCTCACCTCTTCTCTTTCC 58.999 45.833 0.00 0.00 0.00 3.13
703 704 5.221823 CCTTTTCTCACCTCTTCTCTTTCCT 60.222 44.000 0.00 0.00 0.00 3.36
704 705 5.476091 TTTCTCACCTCTTCTCTTTCCTC 57.524 43.478 0.00 0.00 0.00 3.71
705 706 3.436243 TCTCACCTCTTCTCTTTCCTCC 58.564 50.000 0.00 0.00 0.00 4.30
706 707 3.169099 CTCACCTCTTCTCTTTCCTCCA 58.831 50.000 0.00 0.00 0.00 3.86
707 708 3.580458 CTCACCTCTTCTCTTTCCTCCAA 59.420 47.826 0.00 0.00 0.00 3.53
708 709 3.325135 TCACCTCTTCTCTTTCCTCCAAC 59.675 47.826 0.00 0.00 0.00 3.77
709 710 3.326297 CACCTCTTCTCTTTCCTCCAACT 59.674 47.826 0.00 0.00 0.00 3.16
710 711 4.528596 CACCTCTTCTCTTTCCTCCAACTA 59.471 45.833 0.00 0.00 0.00 2.24
711 712 5.012148 CACCTCTTCTCTTTCCTCCAACTAA 59.988 44.000 0.00 0.00 0.00 2.24
712 713 5.607171 ACCTCTTCTCTTTCCTCCAACTAAA 59.393 40.000 0.00 0.00 0.00 1.85
713 714 6.273495 ACCTCTTCTCTTTCCTCCAACTAAAT 59.727 38.462 0.00 0.00 0.00 1.40
714 715 7.458170 ACCTCTTCTCTTTCCTCCAACTAAATA 59.542 37.037 0.00 0.00 0.00 1.40
715 716 7.984617 CCTCTTCTCTTTCCTCCAACTAAATAG 59.015 40.741 0.00 0.00 0.00 1.73
716 717 8.666129 TCTTCTCTTTCCTCCAACTAAATAGA 57.334 34.615 0.00 0.00 0.00 1.98
717 718 9.101325 TCTTCTCTTTCCTCCAACTAAATAGAA 57.899 33.333 0.00 0.00 0.00 2.10
718 719 9.726438 CTTCTCTTTCCTCCAACTAAATAGAAA 57.274 33.333 0.00 0.00 30.07 2.52
753 754 9.832445 TTTATTCCTTATAACCTGCTAACTCAG 57.168 33.333 0.00 0.00 0.00 3.35
768 769 6.820470 CTAACTCAGCTCTATTGTACTTGC 57.180 41.667 0.00 0.00 0.00 4.01
769 770 5.413309 AACTCAGCTCTATTGTACTTGCT 57.587 39.130 0.00 0.00 0.00 3.91
770 771 4.753233 ACTCAGCTCTATTGTACTTGCTG 58.247 43.478 0.00 0.00 46.21 4.41
771 772 4.221703 ACTCAGCTCTATTGTACTTGCTGT 59.778 41.667 11.64 0.00 45.39 4.40
982 986 0.314302 CCGGAGACTAGGTATTGGCG 59.686 60.000 0.00 0.00 0.00 5.69
1227 1231 3.730761 CGTCGAGACCGTTCCCGT 61.731 66.667 0.00 0.00 37.05 5.28
1330 1334 1.775962 GAGCACGACTCGTTCAAGC 59.224 57.895 0.00 2.37 38.32 4.01
1809 1818 2.735663 CTCTGTGGCAGATGCGATATTC 59.264 50.000 0.00 0.00 39.92 1.75
2058 2067 4.120755 GCAGGCCTCTTCTGGGGG 62.121 72.222 0.00 0.00 33.16 5.40
2082 2091 0.689080 GGAGATCTCACCCAGGCTGA 60.689 60.000 23.85 0.00 0.00 4.26
2239 2248 3.680937 CGTACGGCCTTAAATTGACTTCA 59.319 43.478 7.57 0.00 0.00 3.02
2270 2279 9.868277 TTGTTGATTCTTTGTTGTTTTCACTAT 57.132 25.926 0.00 0.00 0.00 2.12
2365 2374 4.213270 GTCCTTATTTTGTTTGCCTTTGCC 59.787 41.667 0.00 0.00 36.33 4.52
2522 2531 0.393808 TCGGGTATTTGCTTCCTGGC 60.394 55.000 0.00 0.00 0.00 4.85
2704 2713 7.663081 TGCTTCTTCCTGGATTATATGTTCATC 59.337 37.037 0.00 0.00 0.00 2.92
3032 3041 2.092429 TGAGCTTCTTGTTCACCCTGTT 60.092 45.455 0.00 0.00 30.89 3.16
3136 3145 8.502387 GCACTGATGATACTTGGAAATATCTTC 58.498 37.037 0.00 0.00 34.70 2.87
3137 3146 9.775854 CACTGATGATACTTGGAAATATCTTCT 57.224 33.333 0.00 0.00 34.97 2.85
3194 3209 7.872113 AATTTTCTGTTCTGTTCTGTCTTCT 57.128 32.000 0.00 0.00 0.00 2.85
3195 3210 6.668541 TTTTCTGTTCTGTTCTGTCTTCTG 57.331 37.500 0.00 0.00 0.00 3.02
3196 3211 3.722147 TCTGTTCTGTTCTGTCTTCTGC 58.278 45.455 0.00 0.00 0.00 4.26
3197 3212 3.386078 TCTGTTCTGTTCTGTCTTCTGCT 59.614 43.478 0.00 0.00 0.00 4.24
3198 3213 3.722147 TGTTCTGTTCTGTCTTCTGCTC 58.278 45.455 0.00 0.00 0.00 4.26
3199 3214 3.063485 GTTCTGTTCTGTCTTCTGCTCC 58.937 50.000 0.00 0.00 0.00 4.70
3200 3215 2.603021 TCTGTTCTGTCTTCTGCTCCT 58.397 47.619 0.00 0.00 0.00 3.69
3201 3216 2.298446 TCTGTTCTGTCTTCTGCTCCTG 59.702 50.000 0.00 0.00 0.00 3.86
3202 3217 2.036992 CTGTTCTGTCTTCTGCTCCTGT 59.963 50.000 0.00 0.00 0.00 4.00
3203 3218 2.224137 TGTTCTGTCTTCTGCTCCTGTG 60.224 50.000 0.00 0.00 0.00 3.66
3260 3275 3.481453 GTCACTCCCTCAGAAAAGCTTT 58.519 45.455 5.69 5.69 0.00 3.51
3583 3621 8.063200 TGTATTTATATGACATACTCCCTCCG 57.937 38.462 0.00 0.00 0.00 4.63
3643 3704 4.974645 TGAGACACTATTTTGGGACAGT 57.025 40.909 0.00 0.00 42.39 3.55
3682 3743 5.656859 GTCTAAATGGGGCTAAAGAATGGTT 59.343 40.000 0.00 0.00 0.00 3.67
3739 3800 9.886132 GACAAGGATACCTAAAATTTCAGTAGA 57.114 33.333 0.00 0.00 31.13 2.59
3744 3805 9.998106 GGATACCTAAAATTTCAGTAGATAGCA 57.002 33.333 0.00 0.00 0.00 3.49
3814 3875 7.388500 TCGTTACCAAAACTTAGGTCCTTAATG 59.612 37.037 0.00 0.00 39.31 1.90
3815 3876 7.361457 CGTTACCAAAACTTAGGTCCTTAATGG 60.361 40.741 0.00 0.68 39.31 3.16
3816 3877 5.330233 ACCAAAACTTAGGTCCTTAATGGG 58.670 41.667 0.00 0.00 30.79 4.00
3817 3878 5.075344 ACCAAAACTTAGGTCCTTAATGGGA 59.925 40.000 0.00 0.00 30.79 4.37
3818 3879 6.194967 CCAAAACTTAGGTCCTTAATGGGAT 58.805 40.000 0.00 0.00 37.73 3.85
3819 3880 6.667848 CCAAAACTTAGGTCCTTAATGGGATT 59.332 38.462 0.00 0.00 37.73 3.01
3820 3881 7.363793 CCAAAACTTAGGTCCTTAATGGGATTG 60.364 40.741 0.00 0.00 37.73 2.67
3821 3882 4.793201 ACTTAGGTCCTTAATGGGATTGC 58.207 43.478 0.00 0.00 37.73 3.56
3822 3883 4.229582 ACTTAGGTCCTTAATGGGATTGCA 59.770 41.667 0.00 0.00 37.73 4.08
3823 3884 3.756082 AGGTCCTTAATGGGATTGCAA 57.244 42.857 0.00 0.00 37.73 4.08
3824 3885 4.270317 AGGTCCTTAATGGGATTGCAAT 57.730 40.909 12.83 12.83 37.73 3.56
3825 3886 4.623863 AGGTCCTTAATGGGATTGCAATT 58.376 39.130 14.33 0.00 37.73 2.32
3826 3887 5.032170 AGGTCCTTAATGGGATTGCAATTT 58.968 37.500 14.33 6.35 37.73 1.82
3827 3888 5.488561 AGGTCCTTAATGGGATTGCAATTTT 59.511 36.000 14.33 8.02 37.73 1.82
3828 3889 6.012596 AGGTCCTTAATGGGATTGCAATTTTT 60.013 34.615 14.33 7.69 37.73 1.94
3829 3890 6.316140 GGTCCTTAATGGGATTGCAATTTTTC 59.684 38.462 14.33 0.77 37.73 2.29
3830 3891 6.316140 GTCCTTAATGGGATTGCAATTTTTCC 59.684 38.462 14.33 10.85 37.73 3.13
3831 3892 5.294060 CCTTAATGGGATTGCAATTTTTCCG 59.706 40.000 14.33 0.00 0.00 4.30
3832 3893 2.758736 TGGGATTGCAATTTTTCCGG 57.241 45.000 14.33 0.00 0.00 5.14
3833 3894 1.338579 TGGGATTGCAATTTTTCCGGC 60.339 47.619 14.33 0.08 0.00 6.13
3834 3895 1.338579 GGGATTGCAATTTTTCCGGCA 60.339 47.619 14.33 0.00 0.00 5.69
3835 3896 2.631267 GGATTGCAATTTTTCCGGCAT 58.369 42.857 14.33 0.00 35.98 4.40
3836 3897 2.352342 GGATTGCAATTTTTCCGGCATG 59.648 45.455 14.33 0.00 35.98 4.06
3837 3898 2.540265 TTGCAATTTTTCCGGCATGT 57.460 40.000 0.00 0.00 35.98 3.21
3838 3899 2.540265 TGCAATTTTTCCGGCATGTT 57.460 40.000 0.00 0.00 0.00 2.71
3839 3900 2.411904 TGCAATTTTTCCGGCATGTTC 58.588 42.857 0.00 0.00 0.00 3.18
3840 3901 2.224137 TGCAATTTTTCCGGCATGTTCA 60.224 40.909 0.00 0.00 0.00 3.18
3841 3902 3.002102 GCAATTTTTCCGGCATGTTCAT 58.998 40.909 0.00 0.00 0.00 2.57
3842 3903 3.181518 GCAATTTTTCCGGCATGTTCATG 60.182 43.478 0.00 8.26 0.00 3.07
3843 3904 2.077413 TTTTTCCGGCATGTTCATGC 57.923 45.000 24.17 24.17 46.27 4.06
3850 3911 3.446507 GCATGTTCATGCCCCTTTG 57.553 52.632 22.42 0.00 41.47 2.77
3851 3912 0.741927 GCATGTTCATGCCCCTTTGC 60.742 55.000 22.42 1.45 41.47 3.68
3852 3913 0.108041 CATGTTCATGCCCCTTTGCC 60.108 55.000 0.00 0.00 0.00 4.52
3853 3914 1.266867 ATGTTCATGCCCCTTTGCCC 61.267 55.000 0.00 0.00 0.00 5.36
3854 3915 1.912763 GTTCATGCCCCTTTGCCCA 60.913 57.895 0.00 0.00 0.00 5.36
3855 3916 1.080722 TTCATGCCCCTTTGCCCAT 59.919 52.632 0.00 0.00 0.00 4.00
3856 3917 0.547229 TTCATGCCCCTTTGCCCATT 60.547 50.000 0.00 0.00 0.00 3.16
3857 3918 0.977108 TCATGCCCCTTTGCCCATTC 60.977 55.000 0.00 0.00 0.00 2.67
3858 3919 0.979187 CATGCCCCTTTGCCCATTCT 60.979 55.000 0.00 0.00 0.00 2.40
3859 3920 0.636101 ATGCCCCTTTGCCCATTCTA 59.364 50.000 0.00 0.00 0.00 2.10
3860 3921 0.033208 TGCCCCTTTGCCCATTCTAG 60.033 55.000 0.00 0.00 0.00 2.43
3861 3922 0.033109 GCCCCTTTGCCCATTCTAGT 60.033 55.000 0.00 0.00 0.00 2.57
3862 3923 1.619704 GCCCCTTTGCCCATTCTAGTT 60.620 52.381 0.00 0.00 0.00 2.24
3863 3924 2.379005 CCCCTTTGCCCATTCTAGTTC 58.621 52.381 0.00 0.00 0.00 3.01
3864 3925 2.291540 CCCCTTTGCCCATTCTAGTTCA 60.292 50.000 0.00 0.00 0.00 3.18
3865 3926 3.628257 CCCCTTTGCCCATTCTAGTTCAT 60.628 47.826 0.00 0.00 0.00 2.57
3869 3930 5.278660 CCTTTGCCCATTCTAGTTCATATGC 60.279 44.000 0.00 0.00 0.00 3.14
3872 3933 2.744202 CCCATTCTAGTTCATATGCGCC 59.256 50.000 4.18 0.00 0.00 6.53
3881 3942 0.743688 TCATATGCGCCGCCATTTTT 59.256 45.000 6.63 0.00 0.00 1.94
3945 4006 3.441572 ACAAGGAAGTGCAGTCAATATGC 59.558 43.478 0.00 0.00 44.11 3.14
3952 4013 1.839354 TGCAGTCAATATGCCCTCAGA 59.161 47.619 0.00 0.00 43.18 3.27
4246 4396 1.663695 CCACTGGTTTGGCCTATACG 58.336 55.000 3.32 0.00 38.35 3.06
4276 4426 6.183360 TGTGTGATCAGGATTCAAAATATGCC 60.183 38.462 0.00 0.00 0.00 4.40
4603 4753 8.624701 TCGAGATTATAAATTCTTTCGTCGTT 57.375 30.769 0.00 0.00 0.00 3.85
4634 4784 2.301346 AGTTTGTGTTCCTGAGCCAAG 58.699 47.619 0.00 0.00 0.00 3.61
4677 4827 3.129813 TGCTGATGTTTGCAGGAATGATC 59.870 43.478 0.00 0.00 34.84 2.92
4782 4932 3.136123 GGCGCCATGATGTGCAGT 61.136 61.111 24.80 0.00 43.47 4.40
4811 4961 1.004979 AGCAGGACTAGAAGTCGGAGT 59.995 52.381 0.00 0.00 45.96 3.85
4813 4963 1.666700 CAGGACTAGAAGTCGGAGTCG 59.333 57.143 0.00 0.00 45.96 4.18
4814 4964 1.015868 GGACTAGAAGTCGGAGTCGG 58.984 60.000 0.00 0.00 45.96 4.79
4815 4965 1.406614 GGACTAGAAGTCGGAGTCGGA 60.407 57.143 0.00 0.00 45.96 4.55
4816 4966 1.935199 GACTAGAAGTCGGAGTCGGAG 59.065 57.143 0.00 0.00 35.28 4.63
4817 4967 0.658897 CTAGAAGTCGGAGTCGGAGC 59.341 60.000 0.00 0.00 36.95 4.70
4818 4968 0.035725 TAGAAGTCGGAGTCGGAGCA 60.036 55.000 0.00 0.00 36.95 4.26
4830 4980 3.397439 GGAGCAGGAGCAGGAGCA 61.397 66.667 0.00 0.00 45.49 4.26
4859 5009 3.080319 GAGCAGAAACAAGAGCAGGAAT 58.920 45.455 0.00 0.00 0.00 3.01
5035 5197 2.816087 CTCACCCTTCAAATGACCACAG 59.184 50.000 0.00 0.00 0.00 3.66
5119 5281 4.222847 GGATCGGTCGCCCAGTCC 62.223 72.222 0.00 0.00 0.00 3.85
5154 5316 5.939764 TGACAAGTCTGCTCCATATAGTT 57.060 39.130 1.53 0.00 0.00 2.24
5279 5441 5.309282 GGAGGATGAAGAGGAAGGTATGATT 59.691 44.000 0.00 0.00 0.00 2.57
5350 5512 1.299316 CAGCTGTGCAAAACGGTGG 60.299 57.895 5.25 0.00 37.49 4.61
5374 5536 5.008613 GTGATAAGTGACAAGGCTTTGAACA 59.991 40.000 16.36 11.63 37.73 3.18
5551 5713 8.764524 TTTTGTTGATTTATTATGGGGAAACG 57.235 30.769 0.00 0.00 0.00 3.60
5552 5714 5.897050 TGTTGATTTATTATGGGGAAACGC 58.103 37.500 0.00 0.00 44.99 4.84
5553 5715 5.654650 TGTTGATTTATTATGGGGAAACGCT 59.345 36.000 0.00 0.00 45.02 5.07
5554 5716 6.153680 TGTTGATTTATTATGGGGAAACGCTT 59.846 34.615 0.00 0.00 45.02 4.68
5555 5717 6.385649 TGATTTATTATGGGGAAACGCTTC 57.614 37.500 0.00 0.00 45.02 3.86
5556 5718 6.126409 TGATTTATTATGGGGAAACGCTTCT 58.874 36.000 0.00 0.00 45.02 2.85
5557 5719 6.262273 TGATTTATTATGGGGAAACGCTTCTC 59.738 38.462 0.00 0.00 45.02 2.87
5558 5720 3.644966 ATTATGGGGAAACGCTTCTCA 57.355 42.857 0.11 0.00 45.02 3.27
5559 5721 3.644966 TTATGGGGAAACGCTTCTCAT 57.355 42.857 0.11 6.90 45.02 2.90
5560 5722 2.044123 ATGGGGAAACGCTTCTCATC 57.956 50.000 0.11 0.00 45.02 2.92
5561 5723 0.690192 TGGGGAAACGCTTCTCATCA 59.310 50.000 0.11 0.00 45.02 3.07
5562 5724 1.339055 TGGGGAAACGCTTCTCATCAG 60.339 52.381 0.11 0.00 45.02 2.90
5563 5725 1.339151 GGGGAAACGCTTCTCATCAGT 60.339 52.381 0.11 0.00 40.76 3.41
5564 5726 2.093658 GGGGAAACGCTTCTCATCAGTA 60.094 50.000 0.11 0.00 40.76 2.74
5565 5727 3.190874 GGGAAACGCTTCTCATCAGTAG 58.809 50.000 0.00 0.00 31.69 2.57
5566 5728 3.368531 GGGAAACGCTTCTCATCAGTAGT 60.369 47.826 0.00 0.00 31.69 2.73
5567 5729 3.860536 GGAAACGCTTCTCATCAGTAGTC 59.139 47.826 0.00 0.00 0.00 2.59
5568 5730 4.381079 GGAAACGCTTCTCATCAGTAGTCT 60.381 45.833 0.00 0.00 0.00 3.24
5569 5731 3.773860 ACGCTTCTCATCAGTAGTCTG 57.226 47.619 0.00 0.00 42.54 3.51
5570 5732 2.425312 ACGCTTCTCATCAGTAGTCTGG 59.575 50.000 0.00 0.00 41.59 3.86
5571 5733 2.425312 CGCTTCTCATCAGTAGTCTGGT 59.575 50.000 0.00 0.00 41.59 4.00
5572 5734 3.628032 CGCTTCTCATCAGTAGTCTGGTA 59.372 47.826 0.00 0.00 41.59 3.25
5573 5735 4.260990 CGCTTCTCATCAGTAGTCTGGTAG 60.261 50.000 0.00 0.00 41.59 3.18
5574 5736 4.037446 GCTTCTCATCAGTAGTCTGGTAGG 59.963 50.000 0.00 0.00 41.59 3.18
5575 5737 5.441500 CTTCTCATCAGTAGTCTGGTAGGA 58.558 45.833 0.00 0.00 41.59 2.94
5576 5738 5.654901 TCTCATCAGTAGTCTGGTAGGAT 57.345 43.478 0.00 0.00 41.59 3.24
5577 5739 5.380900 TCTCATCAGTAGTCTGGTAGGATG 58.619 45.833 0.00 0.00 41.59 3.51
5578 5740 5.132816 TCTCATCAGTAGTCTGGTAGGATGA 59.867 44.000 0.00 0.00 41.59 2.92
5579 5741 5.958321 TCATCAGTAGTCTGGTAGGATGAT 58.042 41.667 0.00 0.00 41.59 2.45
5580 5742 6.377080 TCATCAGTAGTCTGGTAGGATGATT 58.623 40.000 0.00 0.00 41.59 2.57
5581 5743 6.841229 TCATCAGTAGTCTGGTAGGATGATTT 59.159 38.462 0.00 0.00 41.59 2.17
5582 5744 6.716934 TCAGTAGTCTGGTAGGATGATTTC 57.283 41.667 0.00 0.00 41.59 2.17
5583 5745 5.299531 TCAGTAGTCTGGTAGGATGATTTCG 59.700 44.000 0.00 0.00 41.59 3.46
5584 5746 5.067936 CAGTAGTCTGGTAGGATGATTTCGT 59.932 44.000 0.00 0.00 37.97 3.85
5585 5747 4.657436 AGTCTGGTAGGATGATTTCGTC 57.343 45.455 0.00 0.00 0.00 4.20
5586 5748 4.023980 AGTCTGGTAGGATGATTTCGTCA 58.976 43.478 2.44 0.00 42.06 4.35
5587 5749 4.098654 AGTCTGGTAGGATGATTTCGTCAG 59.901 45.833 2.44 0.00 40.92 3.51
5588 5750 4.098044 GTCTGGTAGGATGATTTCGTCAGA 59.902 45.833 2.44 0.00 40.92 3.27
5589 5751 4.098044 TCTGGTAGGATGATTTCGTCAGAC 59.902 45.833 2.44 0.00 40.92 3.51
5590 5752 3.132289 TGGTAGGATGATTTCGTCAGACC 59.868 47.826 12.24 12.24 40.92 3.85
5591 5753 2.586258 AGGATGATTTCGTCAGACCG 57.414 50.000 0.00 0.00 40.92 4.79
5592 5754 1.137086 AGGATGATTTCGTCAGACCGG 59.863 52.381 0.00 0.00 40.92 5.28
5593 5755 1.134788 GGATGATTTCGTCAGACCGGT 60.135 52.381 6.92 6.92 40.92 5.28
5594 5756 2.194271 GATGATTTCGTCAGACCGGTC 58.806 52.381 27.67 27.67 40.92 4.79
5595 5757 0.109458 TGATTTCGTCAGACCGGTCG 60.109 55.000 28.26 22.00 31.80 4.79
5596 5758 1.411493 GATTTCGTCAGACCGGTCGC 61.411 60.000 28.26 20.27 34.09 5.19
5597 5759 3.884581 TTTCGTCAGACCGGTCGCG 62.885 63.158 29.66 29.66 34.09 5.87
5613 5775 3.823421 CGCGACGTCGATGCGTTT 61.823 61.111 39.74 0.00 45.79 3.60
5614 5776 2.468532 GCGACGTCGATGCGTTTT 59.531 55.556 39.74 0.00 45.79 2.43
5615 5777 1.154727 GCGACGTCGATGCGTTTTT 60.155 52.632 39.74 0.00 45.79 1.94
5616 5778 0.091678 GCGACGTCGATGCGTTTTTA 59.908 50.000 39.74 0.00 45.79 1.52
5617 5779 1.460590 GCGACGTCGATGCGTTTTTAA 60.461 47.619 39.74 0.00 45.79 1.52
5618 5780 2.781973 GCGACGTCGATGCGTTTTTAAT 60.782 45.455 39.74 0.00 45.79 1.40
5619 5781 3.010913 CGACGTCGATGCGTTTTTAATC 58.989 45.455 33.35 0.00 45.79 1.75
5620 5782 3.241552 CGACGTCGATGCGTTTTTAATCT 60.242 43.478 33.35 0.00 45.79 2.40
5621 5783 4.240883 ACGTCGATGCGTTTTTAATCTC 57.759 40.909 4.06 0.00 43.04 2.75
5622 5784 3.061697 ACGTCGATGCGTTTTTAATCTCC 59.938 43.478 4.06 0.00 43.04 3.71
5623 5785 3.543460 CGTCGATGCGTTTTTAATCTCCC 60.543 47.826 0.00 0.00 0.00 4.30
5624 5786 2.605818 TCGATGCGTTTTTAATCTCCCG 59.394 45.455 0.00 0.00 0.00 5.14
5625 5787 2.716398 GATGCGTTTTTAATCTCCCGC 58.284 47.619 0.00 0.00 41.34 6.13
5627 5789 2.088423 TGCGTTTTTAATCTCCCGCAT 58.912 42.857 0.00 0.00 45.12 4.73
5628 5790 2.159448 TGCGTTTTTAATCTCCCGCATG 60.159 45.455 0.00 0.00 45.12 4.06
5629 5791 2.159435 GCGTTTTTAATCTCCCGCATGT 60.159 45.455 0.00 0.00 40.72 3.21
5630 5792 3.680789 CGTTTTTAATCTCCCGCATGTC 58.319 45.455 0.00 0.00 0.00 3.06
5631 5793 3.486875 CGTTTTTAATCTCCCGCATGTCC 60.487 47.826 0.00 0.00 0.00 4.02
5632 5794 2.341846 TTTAATCTCCCGCATGTCCC 57.658 50.000 0.00 0.00 0.00 4.46
5633 5795 1.507140 TTAATCTCCCGCATGTCCCT 58.493 50.000 0.00 0.00 0.00 4.20
5634 5796 0.758734 TAATCTCCCGCATGTCCCTG 59.241 55.000 0.00 0.00 0.00 4.45
5635 5797 1.987807 AATCTCCCGCATGTCCCTGG 61.988 60.000 0.00 0.00 0.00 4.45
5636 5798 4.864334 CTCCCGCATGTCCCTGGC 62.864 72.222 0.00 0.00 0.00 4.85
5641 5803 4.783621 GCATGTCCCTGGCGCAGA 62.784 66.667 10.83 0.00 32.44 4.26
5642 5804 2.191375 CATGTCCCTGGCGCAGAT 59.809 61.111 10.83 0.00 32.44 2.90
5643 5805 2.184830 CATGTCCCTGGCGCAGATG 61.185 63.158 10.83 0.00 32.44 2.90
5644 5806 2.369633 ATGTCCCTGGCGCAGATGA 61.370 57.895 10.83 0.00 32.44 2.92
5645 5807 1.913951 ATGTCCCTGGCGCAGATGAA 61.914 55.000 10.83 0.00 32.44 2.57
5646 5808 2.109126 GTCCCTGGCGCAGATGAAC 61.109 63.158 10.83 0.00 32.44 3.18
5647 5809 3.197790 CCCTGGCGCAGATGAACG 61.198 66.667 10.83 0.00 32.44 3.95
5653 5815 2.099062 CGCAGATGAACGCCAAGC 59.901 61.111 0.00 0.00 0.00 4.01
5654 5816 2.393768 CGCAGATGAACGCCAAGCT 61.394 57.895 0.00 0.00 0.00 3.74
5655 5817 1.427020 GCAGATGAACGCCAAGCTC 59.573 57.895 0.00 0.00 0.00 4.09
5656 5818 1.712081 CAGATGAACGCCAAGCTCG 59.288 57.895 0.00 0.00 0.00 5.03
5657 5819 2.103042 AGATGAACGCCAAGCTCGC 61.103 57.895 0.00 0.00 0.00 5.03
5664 5826 3.567797 GCCAAGCTCGCGATGTCC 61.568 66.667 10.36 0.00 0.00 4.02
5665 5827 2.185350 CCAAGCTCGCGATGTCCT 59.815 61.111 10.36 0.57 0.00 3.85
5666 5828 1.880340 CCAAGCTCGCGATGTCCTC 60.880 63.158 10.36 0.00 0.00 3.71
5699 5861 4.344865 TCCGCCAGGAACAAGGCC 62.345 66.667 0.00 0.00 46.71 5.19
5700 5862 4.351054 CCGCCAGGAACAAGGCCT 62.351 66.667 0.00 0.00 46.71 5.19
5701 5863 2.747855 CGCCAGGAACAAGGCCTC 60.748 66.667 5.23 0.00 46.71 4.70
5702 5864 2.759795 GCCAGGAACAAGGCCTCT 59.240 61.111 5.23 0.00 44.30 3.69
5703 5865 1.075659 GCCAGGAACAAGGCCTCTT 59.924 57.895 5.23 0.00 44.30 2.85
5704 5866 0.962855 GCCAGGAACAAGGCCTCTTC 60.963 60.000 5.23 10.29 44.30 2.87
5705 5867 0.322906 CCAGGAACAAGGCCTCTTCC 60.323 60.000 25.51 25.51 32.12 3.46
5706 5868 0.674895 CAGGAACAAGGCCTCTTCCG 60.675 60.000 26.02 19.80 38.84 4.30
5707 5869 0.836400 AGGAACAAGGCCTCTTCCGA 60.836 55.000 26.02 0.00 38.84 4.55
5708 5870 0.673956 GGAACAAGGCCTCTTCCGAC 60.674 60.000 21.09 4.84 0.00 4.79
5709 5871 1.004918 AACAAGGCCTCTTCCGACG 60.005 57.895 5.23 0.00 0.00 5.12
5710 5872 1.755393 AACAAGGCCTCTTCCGACGT 61.755 55.000 5.23 0.00 0.00 4.34
5711 5873 1.738099 CAAGGCCTCTTCCGACGTG 60.738 63.158 5.23 0.00 0.00 4.49
5712 5874 2.943978 AAGGCCTCTTCCGACGTGG 61.944 63.158 5.23 0.00 40.09 4.94
5715 5877 4.796231 CCTCTTCCGACGTGGCCG 62.796 72.222 0.00 0.00 37.80 6.13
5725 5887 2.509336 CGTGGCCGTGAGATCCAC 60.509 66.667 0.00 0.00 45.04 4.02
5726 5888 2.125106 GTGGCCGTGAGATCCACC 60.125 66.667 0.00 0.00 43.76 4.61
5727 5889 3.770040 TGGCCGTGAGATCCACCG 61.770 66.667 0.00 4.31 42.76 4.94
5728 5890 3.771160 GGCCGTGAGATCCACCGT 61.771 66.667 8.25 0.00 42.76 4.83
5729 5891 2.264794 GCCGTGAGATCCACCGTT 59.735 61.111 8.25 0.00 42.76 4.44
5730 5892 1.810030 GCCGTGAGATCCACCGTTC 60.810 63.158 8.25 0.00 42.76 3.95
5731 5893 1.890894 CCGTGAGATCCACCGTTCT 59.109 57.895 8.25 0.00 42.76 3.01
5732 5894 1.100510 CCGTGAGATCCACCGTTCTA 58.899 55.000 8.25 0.00 42.76 2.10
5733 5895 1.202268 CCGTGAGATCCACCGTTCTAC 60.202 57.143 8.25 0.00 42.76 2.59
5734 5896 1.471287 CGTGAGATCCACCGTTCTACA 59.529 52.381 8.25 0.00 42.76 2.74
5735 5897 2.478031 CGTGAGATCCACCGTTCTACAG 60.478 54.545 8.25 0.00 42.76 2.74
5736 5898 2.492484 GTGAGATCCACCGTTCTACAGT 59.508 50.000 3.65 0.00 39.86 3.55
5737 5899 2.753452 TGAGATCCACCGTTCTACAGTC 59.247 50.000 0.00 0.00 0.00 3.51
5738 5900 3.018149 GAGATCCACCGTTCTACAGTCT 58.982 50.000 0.00 0.00 0.00 3.24
5739 5901 2.755655 AGATCCACCGTTCTACAGTCTG 59.244 50.000 0.00 0.00 0.00 3.51
5740 5902 1.254026 TCCACCGTTCTACAGTCTGG 58.746 55.000 4.53 0.00 0.00 3.86
5741 5903 0.966920 CCACCGTTCTACAGTCTGGT 59.033 55.000 4.53 0.00 0.00 4.00
5742 5904 2.165167 CCACCGTTCTACAGTCTGGTA 58.835 52.381 4.53 0.00 0.00 3.25
5743 5905 2.758979 CCACCGTTCTACAGTCTGGTAT 59.241 50.000 4.53 0.00 0.00 2.73
5744 5906 3.428999 CCACCGTTCTACAGTCTGGTATG 60.429 52.174 4.53 0.00 0.00 2.39
5745 5907 2.758979 ACCGTTCTACAGTCTGGTATGG 59.241 50.000 4.53 4.04 0.00 2.74
5746 5908 2.758979 CCGTTCTACAGTCTGGTATGGT 59.241 50.000 4.53 0.00 0.00 3.55
5747 5909 3.428999 CCGTTCTACAGTCTGGTATGGTG 60.429 52.174 4.53 0.00 0.00 4.17
5748 5910 3.428999 CGTTCTACAGTCTGGTATGGTGG 60.429 52.174 4.53 0.00 0.00 4.61
5749 5911 2.108168 TCTACAGTCTGGTATGGTGGC 58.892 52.381 4.53 0.00 0.00 5.01
5750 5912 2.111384 CTACAGTCTGGTATGGTGGCT 58.889 52.381 4.53 0.00 0.00 4.75
5751 5913 0.615331 ACAGTCTGGTATGGTGGCTG 59.385 55.000 4.53 0.00 0.00 4.85
5752 5914 0.745845 CAGTCTGGTATGGTGGCTGC 60.746 60.000 0.00 0.00 0.00 5.25
5808 5971 2.552315 CGCACACACCAGGAAATTTAGT 59.448 45.455 0.00 0.00 0.00 2.24
5809 5972 3.609175 CGCACACACCAGGAAATTTAGTG 60.609 47.826 0.00 0.00 34.61 2.74
5890 6057 1.303317 CACAGGCGGCTAGGGTTTT 60.303 57.895 12.74 0.00 0.00 2.43
6080 6257 3.797256 CCACTTGATCGAACCGTTATCTC 59.203 47.826 0.00 0.00 0.00 2.75
6083 6260 2.019249 TGATCGAACCGTTATCTCCGT 58.981 47.619 0.00 0.00 0.00 4.69
6136 6313 0.969149 AGTGACTTCTGGCACGATGA 59.031 50.000 0.00 0.00 39.88 2.92
6245 6429 5.417754 TCTGAATGAATGCAGAGTCTTCT 57.582 39.130 0.00 0.00 36.31 2.85
6262 6446 5.483583 AGTCTTCTCAAGTAGCTTCTTCCAT 59.516 40.000 2.11 0.00 0.00 3.41
6292 6476 0.539438 GTCCATTTGACCAGCCACCA 60.539 55.000 0.00 0.00 38.09 4.17
6337 6521 0.250901 TGCTTCCTTGGAACCAGAGC 60.251 55.000 0.00 0.97 0.00 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 5.538053 TCTTTTCATTGGGCTTGTATGTCAA 59.462 36.000 0.00 0.00 34.61 3.18
39 40 0.890683 CGCCTCTTTTCATTGGGCTT 59.109 50.000 0.00 0.00 40.52 4.35
62 63 0.038744 CCCTGTGTTCTTCCCTGCAT 59.961 55.000 0.00 0.00 0.00 3.96
71 72 0.765510 GTTCCTCCACCCTGTGTTCT 59.234 55.000 0.00 0.00 0.00 3.01
78 79 4.777366 CCAAAATTATTGTTCCTCCACCCT 59.223 41.667 0.00 0.00 0.00 4.34
112 113 4.855340 TCACTCTTGTCCTTGACCTTTTT 58.145 39.130 0.00 0.00 0.00 1.94
116 117 4.164221 TCTTTTCACTCTTGTCCTTGACCT 59.836 41.667 0.00 0.00 0.00 3.85
118 119 5.360591 TCTCTTTTCACTCTTGTCCTTGAC 58.639 41.667 0.00 0.00 0.00 3.18
122 123 7.557719 TGATTTTTCTCTTTTCACTCTTGTCCT 59.442 33.333 0.00 0.00 0.00 3.85
127 128 9.794685 GTTTCTGATTTTTCTCTTTTCACTCTT 57.205 29.630 0.00 0.00 0.00 2.85
177 178 0.749649 AGGAGAGGCGATCACATCAC 59.250 55.000 0.00 0.00 0.00 3.06
251 252 4.988598 AGCGTGACAAGTGGCGGG 62.989 66.667 0.00 0.00 0.00 6.13
285 286 7.528074 ACTTAAATGGTACCCTTGGGTATTA 57.472 36.000 20.15 12.22 0.00 0.98
289 290 4.853856 ACTACTTAAATGGTACCCTTGGGT 59.146 41.667 16.31 16.31 0.00 4.51
293 294 9.387257 CGAAATAACTACTTAAATGGTACCCTT 57.613 33.333 10.07 2.37 0.00 3.95
485 486 8.630037 GCTGGCTATACTATTAACCATGTTTTT 58.370 33.333 0.00 0.00 0.00 1.94
486 487 7.998964 AGCTGGCTATACTATTAACCATGTTTT 59.001 33.333 0.00 0.00 0.00 2.43
487 488 7.445402 CAGCTGGCTATACTATTAACCATGTTT 59.555 37.037 5.57 0.00 0.00 2.83
488 489 6.936900 CAGCTGGCTATACTATTAACCATGTT 59.063 38.462 5.57 0.00 0.00 2.71
489 490 6.467677 CAGCTGGCTATACTATTAACCATGT 58.532 40.000 5.57 0.00 0.00 3.21
490 491 5.352569 GCAGCTGGCTATACTATTAACCATG 59.647 44.000 17.12 0.00 40.25 3.66
491 492 5.491982 GCAGCTGGCTATACTATTAACCAT 58.508 41.667 17.12 0.00 40.25 3.55
492 493 4.894784 GCAGCTGGCTATACTATTAACCA 58.105 43.478 17.12 0.00 40.25 3.67
508 509 2.042686 TGGCTTATAACCAGCAGCTG 57.957 50.000 16.23 16.23 39.21 4.24
515 516 2.025416 ACATGGCACTGGCTTATAACCA 60.025 45.455 3.97 6.61 40.87 3.67
516 517 2.618709 GACATGGCACTGGCTTATAACC 59.381 50.000 3.97 0.00 40.87 2.85
517 518 3.278574 TGACATGGCACTGGCTTATAAC 58.721 45.455 0.00 0.00 40.87 1.89
518 519 3.643199 TGACATGGCACTGGCTTATAA 57.357 42.857 0.00 0.00 40.87 0.98
519 520 3.862877 ATGACATGGCACTGGCTTATA 57.137 42.857 1.45 0.00 40.87 0.98
520 521 2.742428 ATGACATGGCACTGGCTTAT 57.258 45.000 1.45 0.00 40.87 1.73
521 522 2.512692 AATGACATGGCACTGGCTTA 57.487 45.000 1.45 0.00 40.87 3.09
522 523 1.636148 AAATGACATGGCACTGGCTT 58.364 45.000 1.45 0.00 40.87 4.35
523 524 2.094675 GTAAATGACATGGCACTGGCT 58.905 47.619 1.45 0.00 40.87 4.75
524 525 1.818060 TGTAAATGACATGGCACTGGC 59.182 47.619 1.45 0.00 33.88 4.85
525 526 2.159338 GCTGTAAATGACATGGCACTGG 60.159 50.000 1.45 0.00 37.45 4.00
526 527 2.751259 AGCTGTAAATGACATGGCACTG 59.249 45.455 1.45 0.00 37.45 3.66
527 528 3.012518 GAGCTGTAAATGACATGGCACT 58.987 45.455 1.45 0.00 37.45 4.40
528 529 2.749076 TGAGCTGTAAATGACATGGCAC 59.251 45.455 1.45 0.00 37.45 5.01
529 530 3.070476 TGAGCTGTAAATGACATGGCA 57.930 42.857 2.18 2.18 37.45 4.92
530 531 4.644103 AATGAGCTGTAAATGACATGGC 57.356 40.909 0.00 0.00 37.45 4.40
531 532 9.888878 CTATAAAATGAGCTGTAAATGACATGG 57.111 33.333 0.00 0.00 37.45 3.66
534 535 9.665719 TGACTATAAAATGAGCTGTAAATGACA 57.334 29.630 0.00 0.00 36.35 3.58
540 541 9.448438 ACATGTTGACTATAAAATGAGCTGTAA 57.552 29.630 0.00 0.00 0.00 2.41
542 543 7.928307 ACATGTTGACTATAAAATGAGCTGT 57.072 32.000 0.00 0.00 0.00 4.40
543 544 8.882736 TGTACATGTTGACTATAAAATGAGCTG 58.117 33.333 2.30 0.00 0.00 4.24
544 545 9.448438 TTGTACATGTTGACTATAAAATGAGCT 57.552 29.630 2.30 0.00 0.00 4.09
583 584 8.943002 GCCACATAATAAAACAGTAGTACACTT 58.057 33.333 2.52 0.00 34.26 3.16
584 585 7.551617 GGCCACATAATAAAACAGTAGTACACT 59.448 37.037 0.00 0.00 38.32 3.55
585 586 7.201670 GGGCCACATAATAAAACAGTAGTACAC 60.202 40.741 4.39 0.00 0.00 2.90
586 587 6.824704 GGGCCACATAATAAAACAGTAGTACA 59.175 38.462 4.39 0.00 0.00 2.90
587 588 6.824704 TGGGCCACATAATAAAACAGTAGTAC 59.175 38.462 0.00 0.00 0.00 2.73
588 589 6.824704 GTGGGCCACATAATAAAACAGTAGTA 59.175 38.462 31.26 0.00 34.08 1.82
589 590 5.650703 GTGGGCCACATAATAAAACAGTAGT 59.349 40.000 31.26 0.00 34.08 2.73
590 591 5.067283 GGTGGGCCACATAATAAAACAGTAG 59.933 44.000 35.69 0.00 35.86 2.57
591 592 4.951094 GGTGGGCCACATAATAAAACAGTA 59.049 41.667 35.69 0.00 35.86 2.74
592 593 3.767131 GGTGGGCCACATAATAAAACAGT 59.233 43.478 35.69 0.00 35.86 3.55
593 594 4.023291 AGGTGGGCCACATAATAAAACAG 58.977 43.478 35.69 0.00 35.86 3.16
594 595 4.054359 AGGTGGGCCACATAATAAAACA 57.946 40.909 35.69 0.00 35.86 2.83
595 596 5.414789 AAAGGTGGGCCACATAATAAAAC 57.585 39.130 35.69 16.37 35.86 2.43
596 597 7.741554 ATAAAAGGTGGGCCACATAATAAAA 57.258 32.000 35.69 13.93 35.86 1.52
597 598 7.621683 AGAATAAAAGGTGGGCCACATAATAAA 59.378 33.333 35.69 16.00 35.86 1.40
598 599 7.129425 AGAATAAAAGGTGGGCCACATAATAA 58.871 34.615 35.69 17.00 35.86 1.40
599 600 6.678547 AGAATAAAAGGTGGGCCACATAATA 58.321 36.000 35.69 24.62 35.86 0.98
600 601 5.528337 AGAATAAAAGGTGGGCCACATAAT 58.472 37.500 35.69 23.37 35.86 1.28
601 602 4.941713 AGAATAAAAGGTGGGCCACATAA 58.058 39.130 35.69 19.45 35.86 1.90
602 603 4.017958 TGAGAATAAAAGGTGGGCCACATA 60.018 41.667 35.69 22.35 35.86 2.29
603 604 3.245586 TGAGAATAAAAGGTGGGCCACAT 60.246 43.478 35.69 28.70 35.86 3.21
604 605 2.109128 TGAGAATAAAAGGTGGGCCACA 59.891 45.455 35.69 17.34 35.86 4.17
605 606 2.492088 GTGAGAATAAAAGGTGGGCCAC 59.508 50.000 28.69 28.69 37.19 5.01
606 607 2.109128 TGTGAGAATAAAAGGTGGGCCA 59.891 45.455 0.00 0.00 37.19 5.36
607 608 2.802719 TGTGAGAATAAAAGGTGGGCC 58.197 47.619 0.00 0.00 0.00 5.80
608 609 4.280929 ACTTTGTGAGAATAAAAGGTGGGC 59.719 41.667 0.00 0.00 0.00 5.36
609 610 5.772521 CACTTTGTGAGAATAAAAGGTGGG 58.227 41.667 0.00 0.00 35.23 4.61
610 611 5.222631 GCACTTTGTGAGAATAAAAGGTGG 58.777 41.667 1.52 0.00 35.23 4.61
611 612 5.222631 GGCACTTTGTGAGAATAAAAGGTG 58.777 41.667 1.52 0.00 35.23 4.00
612 613 4.280929 GGGCACTTTGTGAGAATAAAAGGT 59.719 41.667 1.52 0.00 35.23 3.50
613 614 4.280677 TGGGCACTTTGTGAGAATAAAAGG 59.719 41.667 1.52 0.00 35.23 3.11
614 615 5.452078 TGGGCACTTTGTGAGAATAAAAG 57.548 39.130 1.52 0.00 35.23 2.27
615 616 5.596361 TCTTGGGCACTTTGTGAGAATAAAA 59.404 36.000 1.52 0.00 35.23 1.52
616 617 5.136828 TCTTGGGCACTTTGTGAGAATAAA 58.863 37.500 1.52 0.00 35.23 1.40
617 618 4.724399 TCTTGGGCACTTTGTGAGAATAA 58.276 39.130 1.52 0.00 35.23 1.40
618 619 4.326826 CTCTTGGGCACTTTGTGAGAATA 58.673 43.478 1.52 0.00 35.23 1.75
619 620 3.152341 CTCTTGGGCACTTTGTGAGAAT 58.848 45.455 1.52 0.00 35.23 2.40
620 621 2.575532 CTCTTGGGCACTTTGTGAGAA 58.424 47.619 1.52 0.00 35.23 2.87
621 622 1.815408 GCTCTTGGGCACTTTGTGAGA 60.815 52.381 1.52 0.00 35.23 3.27
622 623 0.595095 GCTCTTGGGCACTTTGTGAG 59.405 55.000 1.52 0.00 35.23 3.51
623 624 0.106769 TGCTCTTGGGCACTTTGTGA 60.107 50.000 1.52 0.00 37.29 3.58
624 625 2.417978 TGCTCTTGGGCACTTTGTG 58.582 52.632 0.00 0.00 37.29 3.33
640 641 1.691215 GAGCTAGCTCAAGCACGTGC 61.691 60.000 34.70 32.79 45.30 5.34
641 642 0.108898 AGAGCTAGCTCAAGCACGTG 60.109 55.000 38.86 12.28 45.30 4.49
642 643 0.605589 AAGAGCTAGCTCAAGCACGT 59.394 50.000 38.86 19.15 45.30 4.49
643 644 1.276415 GAAGAGCTAGCTCAAGCACG 58.724 55.000 38.86 0.00 45.30 5.34
644 645 1.999024 GTGAAGAGCTAGCTCAAGCAC 59.001 52.381 38.86 34.21 45.30 4.40
645 646 1.403382 CGTGAAGAGCTAGCTCAAGCA 60.403 52.381 38.86 29.94 45.30 3.91
646 647 1.135257 TCGTGAAGAGCTAGCTCAAGC 60.135 52.381 38.86 28.11 44.99 4.01
647 648 2.929531 TCGTGAAGAGCTAGCTCAAG 57.070 50.000 38.86 24.52 44.99 3.02
648 649 2.820197 TCTTCGTGAAGAGCTAGCTCAA 59.180 45.455 38.86 24.70 44.99 3.02
649 650 2.437413 TCTTCGTGAAGAGCTAGCTCA 58.563 47.619 38.86 21.98 44.99 4.26
658 659 1.816863 AAGCGGGCTCTTCGTGAAGA 61.817 55.000 11.54 11.54 44.47 2.87
659 660 0.108804 TAAGCGGGCTCTTCGTGAAG 60.109 55.000 3.17 3.17 39.71 3.02
660 661 0.389426 GTAAGCGGGCTCTTCGTGAA 60.389 55.000 0.00 0.00 0.00 3.18
661 662 1.214589 GTAAGCGGGCTCTTCGTGA 59.785 57.895 0.00 0.00 0.00 4.35
662 663 1.810030 GGTAAGCGGGCTCTTCGTG 60.810 63.158 0.00 0.00 0.00 4.35
663 664 1.542187 AAGGTAAGCGGGCTCTTCGT 61.542 55.000 0.00 0.00 0.00 3.85
664 665 0.391263 AAAGGTAAGCGGGCTCTTCG 60.391 55.000 0.00 0.00 0.00 3.79
665 666 1.738350 GAAAAGGTAAGCGGGCTCTTC 59.262 52.381 0.00 0.00 0.00 2.87
666 667 1.351350 AGAAAAGGTAAGCGGGCTCTT 59.649 47.619 0.00 0.00 0.00 2.85
667 668 0.984995 AGAAAAGGTAAGCGGGCTCT 59.015 50.000 0.00 0.00 0.00 4.09
668 669 1.338769 TGAGAAAAGGTAAGCGGGCTC 60.339 52.381 0.00 0.00 0.00 4.70
669 670 0.690762 TGAGAAAAGGTAAGCGGGCT 59.309 50.000 0.00 0.00 0.00 5.19
670 671 0.803117 GTGAGAAAAGGTAAGCGGGC 59.197 55.000 0.00 0.00 0.00 6.13
671 672 1.003233 AGGTGAGAAAAGGTAAGCGGG 59.997 52.381 0.00 0.00 0.00 6.13
672 673 2.028020 AGAGGTGAGAAAAGGTAAGCGG 60.028 50.000 0.00 0.00 0.00 5.52
673 674 3.320673 AGAGGTGAGAAAAGGTAAGCG 57.679 47.619 0.00 0.00 0.00 4.68
674 675 4.900684 AGAAGAGGTGAGAAAAGGTAAGC 58.099 43.478 0.00 0.00 0.00 3.09
675 676 6.353404 AGAGAAGAGGTGAGAAAAGGTAAG 57.647 41.667 0.00 0.00 0.00 2.34
676 677 6.749036 AAGAGAAGAGGTGAGAAAAGGTAA 57.251 37.500 0.00 0.00 0.00 2.85
677 678 6.239629 GGAAAGAGAAGAGGTGAGAAAAGGTA 60.240 42.308 0.00 0.00 0.00 3.08
678 679 5.455469 GGAAAGAGAAGAGGTGAGAAAAGGT 60.455 44.000 0.00 0.00 0.00 3.50
679 680 5.000591 GGAAAGAGAAGAGGTGAGAAAAGG 58.999 45.833 0.00 0.00 0.00 3.11
680 681 5.863965 AGGAAAGAGAAGAGGTGAGAAAAG 58.136 41.667 0.00 0.00 0.00 2.27
681 682 5.221742 GGAGGAAAGAGAAGAGGTGAGAAAA 60.222 44.000 0.00 0.00 0.00 2.29
682 683 4.284746 GGAGGAAAGAGAAGAGGTGAGAAA 59.715 45.833 0.00 0.00 0.00 2.52
683 684 3.835395 GGAGGAAAGAGAAGAGGTGAGAA 59.165 47.826 0.00 0.00 0.00 2.87
684 685 3.181417 TGGAGGAAAGAGAAGAGGTGAGA 60.181 47.826 0.00 0.00 0.00 3.27
685 686 3.169099 TGGAGGAAAGAGAAGAGGTGAG 58.831 50.000 0.00 0.00 0.00 3.51
686 687 3.260269 TGGAGGAAAGAGAAGAGGTGA 57.740 47.619 0.00 0.00 0.00 4.02
687 688 3.326297 AGTTGGAGGAAAGAGAAGAGGTG 59.674 47.826 0.00 0.00 0.00 4.00
688 689 3.592865 AGTTGGAGGAAAGAGAAGAGGT 58.407 45.455 0.00 0.00 0.00 3.85
689 690 5.746990 TTAGTTGGAGGAAAGAGAAGAGG 57.253 43.478 0.00 0.00 0.00 3.69
690 691 8.754080 TCTATTTAGTTGGAGGAAAGAGAAGAG 58.246 37.037 0.00 0.00 29.89 2.85
691 692 8.666129 TCTATTTAGTTGGAGGAAAGAGAAGA 57.334 34.615 0.00 0.00 29.89 2.87
692 693 9.726438 TTTCTATTTAGTTGGAGGAAAGAGAAG 57.274 33.333 0.00 0.00 39.91 2.85
727 728 9.832445 CTGAGTTAGCAGGTTATAAGGAATAAA 57.168 33.333 0.00 0.00 31.82 1.40
745 746 6.568869 AGCAAGTACAATAGAGCTGAGTTAG 58.431 40.000 0.00 0.00 0.00 2.34
746 747 6.531503 AGCAAGTACAATAGAGCTGAGTTA 57.468 37.500 0.00 0.00 0.00 2.24
747 748 5.413309 AGCAAGTACAATAGAGCTGAGTT 57.587 39.130 0.00 0.00 0.00 3.01
752 753 5.105146 AGCTTACAGCAAGTACAATAGAGCT 60.105 40.000 0.00 0.00 45.56 4.09
753 754 5.006165 CAGCTTACAGCAAGTACAATAGAGC 59.994 44.000 0.00 0.00 45.56 4.09
754 755 5.521735 CCAGCTTACAGCAAGTACAATAGAG 59.478 44.000 0.00 0.00 45.56 2.43
755 756 5.419542 CCAGCTTACAGCAAGTACAATAGA 58.580 41.667 0.00 0.00 45.56 1.98
756 757 4.572389 CCCAGCTTACAGCAAGTACAATAG 59.428 45.833 0.00 0.00 45.56 1.73
757 758 4.513442 CCCAGCTTACAGCAAGTACAATA 58.487 43.478 0.00 0.00 45.56 1.90
758 759 3.347216 CCCAGCTTACAGCAAGTACAAT 58.653 45.455 0.00 0.00 45.56 2.71
759 760 2.778299 CCCAGCTTACAGCAAGTACAA 58.222 47.619 0.00 0.00 45.56 2.41
760 761 1.610624 GCCCAGCTTACAGCAAGTACA 60.611 52.381 0.00 0.00 45.56 2.90
761 762 1.087501 GCCCAGCTTACAGCAAGTAC 58.912 55.000 0.00 0.00 45.56 2.73
762 763 0.984230 AGCCCAGCTTACAGCAAGTA 59.016 50.000 0.00 0.00 45.56 2.24
763 764 1.763770 AGCCCAGCTTACAGCAAGT 59.236 52.632 0.00 0.00 45.56 3.16
764 765 4.730487 AGCCCAGCTTACAGCAAG 57.270 55.556 0.00 0.00 45.56 4.01
952 956 4.435970 TCTCCGGCTAGGGCACGA 62.436 66.667 0.00 0.00 41.52 4.35
1330 1334 2.202570 GTGATGGGACGACGACGG 60.203 66.667 12.58 0.00 44.46 4.79
2020 2029 2.173356 CCATCCATGTGAGGAGCCTTTA 59.827 50.000 0.00 0.00 41.90 1.85
2058 2067 1.622811 CCTGGGTGAGATCTCCATAGC 59.377 57.143 20.03 10.81 0.00 2.97
2087 2096 1.479323 CCATTGGTCAGGCATTTGGAG 59.521 52.381 0.00 0.00 0.00 3.86
2092 2101 1.620524 CCCTTCCATTGGTCAGGCATT 60.621 52.381 14.86 0.00 0.00 3.56
2239 2248 7.903995 AAACAACAAAGAATCAACAATGTGT 57.096 28.000 0.00 0.00 0.00 3.72
2270 2279 8.554870 TCCCACTGAAACTCTAGTTACTCTATA 58.445 37.037 0.00 0.00 37.25 1.31
2704 2713 5.251764 AGACCAAGAACAAAGGATCAGATG 58.748 41.667 0.00 0.00 0.00 2.90
2825 2834 6.757897 ATTTTCCGCATTTCTAGAATGTCA 57.242 33.333 5.89 0.00 0.00 3.58
3032 3041 1.774254 ACACTTCCAATGGTCACCTGA 59.226 47.619 0.00 0.00 0.00 3.86
3191 3206 0.761187 AGCAGAACACAGGAGCAGAA 59.239 50.000 0.00 0.00 0.00 3.02
3192 3207 0.319728 GAGCAGAACACAGGAGCAGA 59.680 55.000 0.00 0.00 0.00 4.26
3193 3208 0.673022 GGAGCAGAACACAGGAGCAG 60.673 60.000 0.00 0.00 0.00 4.24
3194 3209 1.123861 AGGAGCAGAACACAGGAGCA 61.124 55.000 0.00 0.00 0.00 4.26
3195 3210 0.673022 CAGGAGCAGAACACAGGAGC 60.673 60.000 0.00 0.00 0.00 4.70
3196 3211 0.683973 ACAGGAGCAGAACACAGGAG 59.316 55.000 0.00 0.00 0.00 3.69
3197 3212 1.131638 AACAGGAGCAGAACACAGGA 58.868 50.000 0.00 0.00 0.00 3.86
3198 3213 1.233019 CAACAGGAGCAGAACACAGG 58.767 55.000 0.00 0.00 0.00 4.00
3199 3214 0.590195 GCAACAGGAGCAGAACACAG 59.410 55.000 0.00 0.00 0.00 3.66
3200 3215 0.181114 AGCAACAGGAGCAGAACACA 59.819 50.000 0.00 0.00 0.00 3.72
3201 3216 0.871057 GAGCAACAGGAGCAGAACAC 59.129 55.000 0.00 0.00 0.00 3.32
3202 3217 0.761187 AGAGCAACAGGAGCAGAACA 59.239 50.000 0.00 0.00 0.00 3.18
3203 3218 1.155042 CAGAGCAACAGGAGCAGAAC 58.845 55.000 0.00 0.00 0.00 3.01
3260 3275 2.016318 CAATATTTGCTCCAGACGCCA 58.984 47.619 0.00 0.00 0.00 5.69
3545 3560 6.997476 TCATATAAATACATGAAGCAGCACCA 59.003 34.615 0.00 0.00 0.00 4.17
3576 3591 3.831727 TTTGGGACGGACGGAGGGA 62.832 63.158 0.00 0.00 0.00 4.20
3577 3592 2.193087 ATTTTGGGACGGACGGAGGG 62.193 60.000 0.00 0.00 0.00 4.30
3578 3593 0.538118 TATTTTGGGACGGACGGAGG 59.462 55.000 0.00 0.00 0.00 4.30
3583 3621 3.671716 AGACACTTATTTTGGGACGGAC 58.328 45.455 0.00 0.00 0.00 4.79
3643 3704 6.833416 CCCATTTAGACATTCAAATACTCCCA 59.167 38.462 0.00 0.00 0.00 4.37
3682 3743 1.613928 TACCATGGGTCGCAAGGGA 60.614 57.895 18.09 4.04 37.09 4.20
3739 3800 5.275067 ACACAACCAAAAACACATGCTAT 57.725 34.783 0.00 0.00 0.00 2.97
3744 3805 4.543590 TTGGACACAACCAAAAACACAT 57.456 36.364 0.00 0.00 45.36 3.21
3800 3861 4.792068 TGCAATCCCATTAAGGACCTAAG 58.208 43.478 0.00 0.00 39.24 2.18
3805 3866 6.316140 GGAAAAATTGCAATCCCATTAAGGAC 59.684 38.462 13.38 0.00 39.24 3.85
3814 3875 1.338579 TGCCGGAAAAATTGCAATCCC 60.339 47.619 13.38 10.62 0.00 3.85
3815 3876 2.091852 TGCCGGAAAAATTGCAATCC 57.908 45.000 13.38 9.61 0.00 3.01
3816 3877 3.002102 ACATGCCGGAAAAATTGCAATC 58.998 40.909 13.38 0.14 37.27 2.67
3817 3878 3.056588 ACATGCCGGAAAAATTGCAAT 57.943 38.095 5.05 5.99 37.27 3.56
3818 3879 2.540265 ACATGCCGGAAAAATTGCAA 57.460 40.000 5.05 0.00 37.27 4.08
3819 3880 2.224137 TGAACATGCCGGAAAAATTGCA 60.224 40.909 5.05 0.00 38.23 4.08
3820 3881 2.411904 TGAACATGCCGGAAAAATTGC 58.588 42.857 5.05 0.00 0.00 3.56
3821 3882 4.587211 CATGAACATGCCGGAAAAATTG 57.413 40.909 5.05 0.00 31.39 2.32
3833 3894 0.108041 GGCAAAGGGGCATGAACATG 60.108 55.000 10.04 10.04 42.77 3.21
3834 3895 1.266867 GGGCAAAGGGGCATGAACAT 61.267 55.000 0.00 0.00 45.66 2.71
3835 3896 1.912763 GGGCAAAGGGGCATGAACA 60.913 57.895 0.00 0.00 45.66 3.18
3836 3897 1.266867 ATGGGCAAAGGGGCATGAAC 61.267 55.000 0.00 0.00 45.66 3.18
3837 3898 0.547229 AATGGGCAAAGGGGCATGAA 60.547 50.000 0.00 0.00 45.66 2.57
3838 3899 0.977108 GAATGGGCAAAGGGGCATGA 60.977 55.000 0.00 0.00 45.66 3.07
3839 3900 0.979187 AGAATGGGCAAAGGGGCATG 60.979 55.000 0.00 0.00 45.66 4.06
3840 3901 0.636101 TAGAATGGGCAAAGGGGCAT 59.364 50.000 0.00 0.00 45.66 4.40
3841 3902 0.033208 CTAGAATGGGCAAAGGGGCA 60.033 55.000 0.00 0.00 45.66 5.36
3842 3903 0.033109 ACTAGAATGGGCAAAGGGGC 60.033 55.000 0.00 0.00 42.44 5.80
3843 3904 2.291540 TGAACTAGAATGGGCAAAGGGG 60.292 50.000 0.00 0.00 0.00 4.79
3844 3905 3.085952 TGAACTAGAATGGGCAAAGGG 57.914 47.619 0.00 0.00 0.00 3.95
3845 3906 5.278660 GCATATGAACTAGAATGGGCAAAGG 60.279 44.000 6.97 0.00 0.00 3.11
3846 3907 5.561532 CGCATATGAACTAGAATGGGCAAAG 60.562 44.000 6.97 0.00 0.00 2.77
3847 3908 4.275689 CGCATATGAACTAGAATGGGCAAA 59.724 41.667 6.97 0.00 0.00 3.68
3848 3909 3.814842 CGCATATGAACTAGAATGGGCAA 59.185 43.478 6.97 0.00 0.00 4.52
3849 3910 3.402110 CGCATATGAACTAGAATGGGCA 58.598 45.455 6.97 0.00 0.00 5.36
3850 3911 2.160417 GCGCATATGAACTAGAATGGGC 59.840 50.000 6.97 8.14 46.42 5.36
3851 3912 2.744202 GGCGCATATGAACTAGAATGGG 59.256 50.000 10.83 2.17 35.90 4.00
3852 3913 2.413112 CGGCGCATATGAACTAGAATGG 59.587 50.000 10.83 0.00 0.00 3.16
3853 3914 2.159787 GCGGCGCATATGAACTAGAATG 60.160 50.000 29.21 0.00 0.00 2.67
3854 3915 2.069273 GCGGCGCATATGAACTAGAAT 58.931 47.619 29.21 0.00 0.00 2.40
3855 3916 1.497991 GCGGCGCATATGAACTAGAA 58.502 50.000 29.21 0.00 0.00 2.10
3856 3917 0.319555 GGCGGCGCATATGAACTAGA 60.320 55.000 34.36 0.00 0.00 2.43
3857 3918 0.599991 TGGCGGCGCATATGAACTAG 60.600 55.000 34.36 0.00 0.00 2.57
3858 3919 0.034756 ATGGCGGCGCATATGAACTA 59.965 50.000 34.36 7.77 0.00 2.24
3859 3920 0.819259 AATGGCGGCGCATATGAACT 60.819 50.000 34.36 9.18 0.00 3.01
3860 3921 0.030638 AAATGGCGGCGCATATGAAC 59.969 50.000 34.36 14.73 0.00 3.18
3861 3922 0.743688 AAAATGGCGGCGCATATGAA 59.256 45.000 34.36 11.48 0.00 2.57
3862 3923 0.743688 AAAAATGGCGGCGCATATGA 59.256 45.000 34.36 11.66 0.00 2.15
3863 3924 3.271142 AAAAATGGCGGCGCATATG 57.729 47.368 34.36 0.00 0.00 1.78
3888 3949 2.429478 GTTTAAGCAAAGGCCTACCGA 58.571 47.619 5.16 0.00 42.76 4.69
3889 3950 1.471287 GGTTTAAGCAAAGGCCTACCG 59.529 52.381 5.16 0.00 42.76 4.02
3896 3957 3.588955 GCCTGATTGGTTTAAGCAAAGG 58.411 45.455 18.15 18.15 39.20 3.11
3945 4006 6.598457 CCATGATAATGAATAGCTTCTGAGGG 59.402 42.308 0.00 0.00 32.29 4.30
3952 4013 6.152323 GGACATGCCATGATAATGAATAGCTT 59.848 38.462 12.53 0.00 36.34 3.74
4246 4396 7.769272 TTTTGAATCCTGATCACACAAAAAC 57.231 32.000 13.32 0.00 34.45 2.43
4276 4426 3.250040 CCAGGATTTTAATTAGGTCGGCG 59.750 47.826 0.00 0.00 0.00 6.46
4412 4562 4.202441 CCATACCTTGAATCCAGTTCAGG 58.798 47.826 0.00 0.00 46.85 3.86
4536 4686 4.600062 ACAAGACCCAAACTCTGTTTTCT 58.400 39.130 0.00 0.00 0.00 2.52
4590 4740 3.302870 CCGAACAACAACGACGAAAGAAT 60.303 43.478 0.00 0.00 0.00 2.40
4603 4753 3.374678 GGAACACAAACTACCGAACAACA 59.625 43.478 0.00 0.00 0.00 3.33
4634 4784 4.618227 GCAACATTGTAAAGACCATGGTCC 60.618 45.833 36.09 23.17 45.59 4.46
4782 4932 1.767088 TCTAGTCCTGCTACGGCTAGA 59.233 52.381 0.00 5.76 37.41 2.43
4811 4961 2.757508 CTCCTGCTCCTGCTCCGA 60.758 66.667 0.00 0.00 40.48 4.55
4813 4963 3.388703 CTGCTCCTGCTCCTGCTCC 62.389 68.421 0.00 0.00 40.48 4.70
4814 4964 2.187424 CTGCTCCTGCTCCTGCTC 59.813 66.667 0.00 0.00 40.48 4.26
4815 4965 3.400928 CCTGCTCCTGCTCCTGCT 61.401 66.667 0.00 0.00 40.48 4.24
4816 4966 3.388703 CTCCTGCTCCTGCTCCTGC 62.389 68.421 0.00 0.00 40.48 4.85
4817 4967 2.901813 CTCCTGCTCCTGCTCCTG 59.098 66.667 0.00 0.00 40.48 3.86
4818 4968 3.082701 GCTCCTGCTCCTGCTCCT 61.083 66.667 0.00 0.00 40.48 3.69
4830 4980 0.767375 TTGTTTCTGCTCCTGCTCCT 59.233 50.000 0.00 0.00 40.48 3.69
4859 5009 2.123683 CTCCTGCTCCGGCTCCTA 60.124 66.667 0.00 0.00 39.59 2.94
4936 5098 1.311651 GCCAGCTCTTCTTTCAGGCC 61.312 60.000 0.00 0.00 34.71 5.19
4938 5100 1.736612 GAGCCAGCTCTTCTTTCAGG 58.263 55.000 12.42 0.00 39.80 3.86
5119 5281 1.078918 TTGTCATCCTGCTCCTGCG 60.079 57.895 0.00 0.00 43.34 5.18
5154 5316 3.069586 CCTCCTTCGCCATTATACACAGA 59.930 47.826 0.00 0.00 0.00 3.41
5279 5441 1.062581 CCCTCCTCTCCCTCTTCATCA 60.063 57.143 0.00 0.00 0.00 3.07
5342 5504 3.478857 TGTCACTTATCACCACCGTTT 57.521 42.857 0.00 0.00 0.00 3.60
5350 5512 5.008613 TGTTCAAAGCCTTGTCACTTATCAC 59.991 40.000 0.00 0.00 33.94 3.06
5409 5571 7.649306 ACAAACAACAGCTCAATCATAAAAGTC 59.351 33.333 0.00 0.00 0.00 3.01
5541 5703 1.281867 TGATGAGAAGCGTTTCCCCAT 59.718 47.619 14.25 14.25 33.64 4.00
5542 5704 0.690192 TGATGAGAAGCGTTTCCCCA 59.310 50.000 8.51 7.67 33.64 4.96
5543 5705 1.339151 ACTGATGAGAAGCGTTTCCCC 60.339 52.381 8.51 1.96 33.64 4.81
5544 5706 2.100605 ACTGATGAGAAGCGTTTCCC 57.899 50.000 8.51 0.00 33.64 3.97
5545 5707 3.851098 ACTACTGATGAGAAGCGTTTCC 58.149 45.455 8.51 1.27 33.64 3.13
5546 5708 4.560819 CAGACTACTGATGAGAAGCGTTTC 59.439 45.833 3.49 3.49 46.03 2.78
5547 5709 4.489810 CAGACTACTGATGAGAAGCGTTT 58.510 43.478 0.00 0.00 46.03 3.60
5548 5710 3.119316 CCAGACTACTGATGAGAAGCGTT 60.119 47.826 0.00 0.00 46.03 4.84
5549 5711 2.425312 CCAGACTACTGATGAGAAGCGT 59.575 50.000 0.00 0.00 46.03 5.07
5550 5712 2.425312 ACCAGACTACTGATGAGAAGCG 59.575 50.000 0.00 0.00 46.03 4.68
5551 5713 4.037446 CCTACCAGACTACTGATGAGAAGC 59.963 50.000 0.00 0.00 46.03 3.86
5552 5714 5.441500 TCCTACCAGACTACTGATGAGAAG 58.558 45.833 0.00 0.00 46.03 2.85
5553 5715 5.452341 TCCTACCAGACTACTGATGAGAA 57.548 43.478 0.00 0.00 46.03 2.87
5554 5716 5.132816 TCATCCTACCAGACTACTGATGAGA 59.867 44.000 0.00 0.00 46.03 3.27
5555 5717 5.380900 TCATCCTACCAGACTACTGATGAG 58.619 45.833 0.00 0.00 46.03 2.90
5556 5718 5.388599 TCATCCTACCAGACTACTGATGA 57.611 43.478 0.00 0.00 46.03 2.92
5557 5719 6.662865 AATCATCCTACCAGACTACTGATG 57.337 41.667 0.00 0.00 46.03 3.07
5558 5720 6.015856 CGAAATCATCCTACCAGACTACTGAT 60.016 42.308 0.00 0.00 46.03 2.90
5559 5721 5.299531 CGAAATCATCCTACCAGACTACTGA 59.700 44.000 0.00 0.00 46.03 3.41
5560 5722 5.067936 ACGAAATCATCCTACCAGACTACTG 59.932 44.000 0.00 0.00 43.12 2.74
5561 5723 5.202004 ACGAAATCATCCTACCAGACTACT 58.798 41.667 0.00 0.00 0.00 2.57
5562 5724 5.067413 TGACGAAATCATCCTACCAGACTAC 59.933 44.000 0.00 0.00 29.99 2.73
5563 5725 5.198207 TGACGAAATCATCCTACCAGACTA 58.802 41.667 0.00 0.00 29.99 2.59
5564 5726 4.023980 TGACGAAATCATCCTACCAGACT 58.976 43.478 0.00 0.00 29.99 3.24
5565 5727 4.098044 TCTGACGAAATCATCCTACCAGAC 59.902 45.833 0.00 0.00 36.48 3.51
5566 5728 4.098044 GTCTGACGAAATCATCCTACCAGA 59.902 45.833 0.00 0.00 36.48 3.86
5567 5729 4.363999 GTCTGACGAAATCATCCTACCAG 58.636 47.826 0.00 0.00 36.48 4.00
5568 5730 3.132289 GGTCTGACGAAATCATCCTACCA 59.868 47.826 1.07 0.00 36.48 3.25
5569 5731 3.718815 GGTCTGACGAAATCATCCTACC 58.281 50.000 1.07 0.00 36.48 3.18
5570 5732 3.372954 CGGTCTGACGAAATCATCCTAC 58.627 50.000 1.07 0.00 36.48 3.18
5571 5733 2.361119 CCGGTCTGACGAAATCATCCTA 59.639 50.000 1.07 0.00 36.48 2.94
5572 5734 1.137086 CCGGTCTGACGAAATCATCCT 59.863 52.381 1.07 0.00 36.48 3.24
5573 5735 1.134788 ACCGGTCTGACGAAATCATCC 60.135 52.381 0.00 0.00 36.48 3.51
5574 5736 2.194271 GACCGGTCTGACGAAATCATC 58.806 52.381 27.64 0.00 36.48 2.92
5575 5737 1.469251 CGACCGGTCTGACGAAATCAT 60.469 52.381 30.92 0.00 36.48 2.45
5576 5738 0.109458 CGACCGGTCTGACGAAATCA 60.109 55.000 30.92 0.00 35.47 2.57
5577 5739 1.411493 GCGACCGGTCTGACGAAATC 61.411 60.000 30.92 2.61 35.47 2.17
5578 5740 1.445582 GCGACCGGTCTGACGAAAT 60.446 57.895 30.92 0.00 35.47 2.17
5579 5741 2.049802 GCGACCGGTCTGACGAAA 60.050 61.111 30.92 0.00 35.47 3.46
5580 5742 4.394078 CGCGACCGGTCTGACGAA 62.394 66.667 30.92 0.00 35.47 3.85
5601 5763 3.543460 GGGAGATTAAAAACGCATCGACG 60.543 47.826 0.00 0.00 39.50 5.12
5602 5764 3.543460 CGGGAGATTAAAAACGCATCGAC 60.543 47.826 0.00 0.00 0.00 4.20
5603 5765 2.605818 CGGGAGATTAAAAACGCATCGA 59.394 45.455 0.00 0.00 0.00 3.59
5604 5766 2.849502 GCGGGAGATTAAAAACGCATCG 60.850 50.000 0.00 0.00 45.57 3.84
5605 5767 2.716398 GCGGGAGATTAAAAACGCATC 58.284 47.619 0.00 0.00 45.57 3.91
5606 5768 2.844122 GCGGGAGATTAAAAACGCAT 57.156 45.000 0.00 0.00 45.57 4.73
5608 5770 2.159435 ACATGCGGGAGATTAAAAACGC 60.159 45.455 0.00 0.00 46.34 4.84
5609 5771 3.486875 GGACATGCGGGAGATTAAAAACG 60.487 47.826 0.00 0.00 0.00 3.60
5610 5772 3.181490 GGGACATGCGGGAGATTAAAAAC 60.181 47.826 0.00 0.00 0.00 2.43
5611 5773 3.020984 GGGACATGCGGGAGATTAAAAA 58.979 45.455 0.00 0.00 0.00 1.94
5612 5774 2.241176 AGGGACATGCGGGAGATTAAAA 59.759 45.455 0.00 0.00 0.00 1.52
5613 5775 1.843851 AGGGACATGCGGGAGATTAAA 59.156 47.619 0.00 0.00 0.00 1.52
5614 5776 1.140852 CAGGGACATGCGGGAGATTAA 59.859 52.381 0.00 0.00 0.00 1.40
5615 5777 0.758734 CAGGGACATGCGGGAGATTA 59.241 55.000 0.00 0.00 0.00 1.75
5616 5778 1.528824 CAGGGACATGCGGGAGATT 59.471 57.895 0.00 0.00 0.00 2.40
5617 5779 2.446848 CCAGGGACATGCGGGAGAT 61.447 63.158 0.00 0.00 0.00 2.75
5618 5780 3.083349 CCAGGGACATGCGGGAGA 61.083 66.667 0.00 0.00 0.00 3.71
5619 5781 4.864334 GCCAGGGACATGCGGGAG 62.864 72.222 0.00 0.00 0.00 4.30
5624 5786 4.783621 TCTGCGCCAGGGACATGC 62.784 66.667 4.18 0.00 31.51 4.06
5625 5787 2.184830 CATCTGCGCCAGGGACATG 61.185 63.158 4.18 0.00 31.51 3.21
5626 5788 1.913951 TTCATCTGCGCCAGGGACAT 61.914 55.000 4.18 0.00 31.51 3.06
5627 5789 2.592032 TTCATCTGCGCCAGGGACA 61.592 57.895 4.18 0.00 31.51 4.02
5628 5790 2.109126 GTTCATCTGCGCCAGGGAC 61.109 63.158 4.18 0.00 31.51 4.46
5629 5791 2.268920 GTTCATCTGCGCCAGGGA 59.731 61.111 4.18 0.00 31.51 4.20
5630 5792 3.197790 CGTTCATCTGCGCCAGGG 61.198 66.667 4.18 0.00 31.51 4.45
5631 5793 3.869272 GCGTTCATCTGCGCCAGG 61.869 66.667 4.18 0.00 46.93 4.45
5636 5798 2.099062 GCTTGGCGTTCATCTGCG 59.901 61.111 0.00 0.00 0.00 5.18
5637 5799 1.427020 GAGCTTGGCGTTCATCTGC 59.573 57.895 0.00 0.00 0.00 4.26
5638 5800 1.712081 CGAGCTTGGCGTTCATCTG 59.288 57.895 0.00 0.00 0.00 2.90
5639 5801 2.103042 GCGAGCTTGGCGTTCATCT 61.103 57.895 2.37 0.00 0.00 2.90
5640 5802 2.401195 GCGAGCTTGGCGTTCATC 59.599 61.111 2.37 0.00 0.00 2.92
5647 5809 3.567797 GGACATCGCGAGCTTGGC 61.568 66.667 16.66 10.64 0.00 4.52
5648 5810 1.880340 GAGGACATCGCGAGCTTGG 60.880 63.158 16.66 3.93 0.00 3.61
5649 5811 2.226896 CGAGGACATCGCGAGCTTG 61.227 63.158 16.66 11.12 45.98 4.01
5650 5812 2.103143 CGAGGACATCGCGAGCTT 59.897 61.111 16.66 2.50 45.98 3.74
5677 5839 3.234630 TTGTTCCTGGCGGACGGAG 62.235 63.158 0.00 0.00 39.60 4.63
5678 5840 3.234630 CTTGTTCCTGGCGGACGGA 62.235 63.158 0.00 0.00 39.60 4.69
5679 5841 2.742372 CTTGTTCCTGGCGGACGG 60.742 66.667 0.00 0.00 39.60 4.79
5680 5842 2.742372 CCTTGTTCCTGGCGGACG 60.742 66.667 0.00 0.00 39.60 4.79
5681 5843 3.056328 GCCTTGTTCCTGGCGGAC 61.056 66.667 0.00 0.00 39.60 4.79
5686 5848 0.322906 GGAAGAGGCCTTGTTCCTGG 60.323 60.000 28.78 0.00 37.38 4.45
5687 5849 0.674895 CGGAAGAGGCCTTGTTCCTG 60.675 60.000 30.89 23.85 38.09 3.86
5688 5850 0.836400 TCGGAAGAGGCCTTGTTCCT 60.836 55.000 30.89 14.05 38.09 3.36
5689 5851 0.673956 GTCGGAAGAGGCCTTGTTCC 60.674 60.000 27.30 27.30 43.49 3.62
5690 5852 1.014564 CGTCGGAAGAGGCCTTGTTC 61.015 60.000 6.77 13.52 43.49 3.18
5691 5853 1.004918 CGTCGGAAGAGGCCTTGTT 60.005 57.895 6.77 3.29 43.49 2.83
5692 5854 2.657237 CGTCGGAAGAGGCCTTGT 59.343 61.111 6.77 0.00 43.49 3.16
5708 5870 2.509336 GTGGATCTCACGGCCACG 60.509 66.667 2.24 0.00 42.20 4.94
5710 5872 3.770040 CGGTGGATCTCACGGCCA 61.770 66.667 2.24 0.00 46.96 5.36
5711 5873 3.310860 AACGGTGGATCTCACGGCC 62.311 63.158 16.42 0.00 46.60 6.13
5712 5874 1.810030 GAACGGTGGATCTCACGGC 60.810 63.158 16.42 4.08 46.60 5.68
5713 5875 1.100510 TAGAACGGTGGATCTCACGG 58.899 55.000 15.49 15.49 46.96 4.94
5714 5876 1.471287 TGTAGAACGGTGGATCTCACG 59.529 52.381 7.85 5.41 46.96 4.35
5715 5877 2.492484 ACTGTAGAACGGTGGATCTCAC 59.508 50.000 5.94 5.94 45.34 3.51
5716 5878 2.753452 GACTGTAGAACGGTGGATCTCA 59.247 50.000 0.00 0.00 37.93 3.27
5717 5879 3.018149 AGACTGTAGAACGGTGGATCTC 58.982 50.000 0.00 0.00 37.93 2.75
5718 5880 2.755655 CAGACTGTAGAACGGTGGATCT 59.244 50.000 0.00 0.00 37.93 2.75
5719 5881 2.159226 CCAGACTGTAGAACGGTGGATC 60.159 54.545 0.93 0.00 37.93 3.36
5720 5882 1.825474 CCAGACTGTAGAACGGTGGAT 59.175 52.381 0.93 0.00 37.93 3.41
5721 5883 1.254026 CCAGACTGTAGAACGGTGGA 58.746 55.000 0.93 0.00 37.93 4.02
5722 5884 0.966920 ACCAGACTGTAGAACGGTGG 59.033 55.000 0.93 0.00 37.93 4.61
5723 5885 3.428999 CCATACCAGACTGTAGAACGGTG 60.429 52.174 0.93 0.00 37.93 4.94
5724 5886 2.758979 CCATACCAGACTGTAGAACGGT 59.241 50.000 0.93 0.00 41.12 4.83
5725 5887 2.758979 ACCATACCAGACTGTAGAACGG 59.241 50.000 0.93 0.00 0.00 4.44
5726 5888 3.428999 CCACCATACCAGACTGTAGAACG 60.429 52.174 0.93 0.00 0.00 3.95
5727 5889 3.679083 GCCACCATACCAGACTGTAGAAC 60.679 52.174 0.93 0.00 0.00 3.01
5728 5890 2.500098 GCCACCATACCAGACTGTAGAA 59.500 50.000 0.93 0.00 0.00 2.10
5729 5891 2.108168 GCCACCATACCAGACTGTAGA 58.892 52.381 0.93 0.00 0.00 2.59
5730 5892 2.111384 AGCCACCATACCAGACTGTAG 58.889 52.381 0.93 0.00 0.00 2.74
5731 5893 1.831106 CAGCCACCATACCAGACTGTA 59.169 52.381 0.93 0.00 0.00 2.74
5732 5894 0.615331 CAGCCACCATACCAGACTGT 59.385 55.000 0.93 0.00 0.00 3.55
5733 5895 0.745845 GCAGCCACCATACCAGACTG 60.746 60.000 0.00 0.00 0.00 3.51
5734 5896 0.911525 AGCAGCCACCATACCAGACT 60.912 55.000 0.00 0.00 0.00 3.24
5735 5897 0.745845 CAGCAGCCACCATACCAGAC 60.746 60.000 0.00 0.00 0.00 3.51
5736 5898 1.200760 ACAGCAGCCACCATACCAGA 61.201 55.000 0.00 0.00 0.00 3.86
5737 5899 0.745845 GACAGCAGCCACCATACCAG 60.746 60.000 0.00 0.00 0.00 4.00
5738 5900 1.299648 GACAGCAGCCACCATACCA 59.700 57.895 0.00 0.00 0.00 3.25
5739 5901 0.745845 CTGACAGCAGCCACCATACC 60.746 60.000 0.00 0.00 34.95 2.73
5740 5902 0.745845 CCTGACAGCAGCCACCATAC 60.746 60.000 0.00 0.00 40.91 2.39
5741 5903 0.909133 TCCTGACAGCAGCCACCATA 60.909 55.000 0.00 0.00 40.91 2.74
5742 5904 1.569030 ATCCTGACAGCAGCCACCAT 61.569 55.000 0.00 0.00 40.91 3.55
5743 5905 2.189191 GATCCTGACAGCAGCCACCA 62.189 60.000 0.00 0.00 40.91 4.17
5744 5906 1.451028 GATCCTGACAGCAGCCACC 60.451 63.158 0.00 0.00 40.91 4.61
5745 5907 0.743701 CTGATCCTGACAGCAGCCAC 60.744 60.000 0.00 0.00 40.91 5.01
5746 5908 0.906282 TCTGATCCTGACAGCAGCCA 60.906 55.000 0.00 0.00 40.91 4.75
5747 5909 0.179078 CTCTGATCCTGACAGCAGCC 60.179 60.000 0.00 0.00 40.91 4.85
5748 5910 0.810823 GCTCTGATCCTGACAGCAGC 60.811 60.000 0.00 0.00 40.91 5.25
5749 5911 0.825410 AGCTCTGATCCTGACAGCAG 59.175 55.000 0.00 0.00 41.93 4.24
5750 5912 2.149973 TAGCTCTGATCCTGACAGCA 57.850 50.000 0.00 0.00 35.61 4.41
5751 5913 2.627221 TCATAGCTCTGATCCTGACAGC 59.373 50.000 0.00 0.00 35.61 4.40
5752 5914 5.063180 GATCATAGCTCTGATCCTGACAG 57.937 47.826 24.60 0.00 43.76 3.51
5808 5971 1.806542 GCAAATCGCTCTGTTCTTCCA 59.193 47.619 0.00 0.00 37.77 3.53
5809 5972 2.534231 GCAAATCGCTCTGTTCTTCC 57.466 50.000 0.00 0.00 37.77 3.46
5831 5998 3.305335 CCCCAAATTCTCAACAAGAACCG 60.305 47.826 0.00 0.00 46.61 4.44
5890 6057 3.005684 GCATGACTTTGTGATTTGGGTGA 59.994 43.478 0.00 0.00 0.00 4.02
6080 6257 0.670546 ATCGTGTGGCTCTGAAACGG 60.671 55.000 0.00 0.00 35.08 4.44
6083 6260 1.069978 TGTCATCGTGTGGCTCTGAAA 59.930 47.619 0.00 0.00 32.24 2.69
6136 6313 4.019174 CAGTTCATAGCATTCCCCTGTTT 58.981 43.478 0.00 0.00 0.00 2.83
6202 6385 8.760980 TCAGAAGGTTTTTCCATCTTTTAGAA 57.239 30.769 0.00 0.00 40.85 2.10
6245 6429 3.774766 TGCCTATGGAAGAAGCTACTTGA 59.225 43.478 0.00 0.00 0.00 3.02
6292 6476 5.411669 GGAAACATCAGTATTCCTGTCGTTT 59.588 40.000 9.78 9.78 43.14 3.60
6337 6521 1.805345 CTGAAGCTGTGCTGGAAAGAG 59.195 52.381 0.00 0.00 39.62 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.