Multiple sequence alignment - TraesCS3B01G228100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G228100 chr3B 100.000 6724 0 0 1 6724 328466448 328473171 0.000000e+00 12417.0
1 TraesCS3B01G228100 chr3B 95.890 6083 237 13 647 6724 632785826 632791900 0.000000e+00 9836.0
2 TraesCS3B01G228100 chr3B 95.231 4299 177 17 622 4914 322354750 322359026 0.000000e+00 6778.0
3 TraesCS3B01G228100 chr3B 93.515 956 38 5 3081 4034 347920102 347919169 0.000000e+00 1400.0
4 TraesCS3B01G228100 chr3B 95.462 617 27 1 5426 6042 85699885 85700500 0.000000e+00 983.0
5 TraesCS3B01G228100 chr3B 93.161 658 33 5 6067 6724 628846900 628847545 0.000000e+00 955.0
6 TraesCS3B01G228100 chr3B 88.034 702 35 14 2369 3035 456613157 456612470 0.000000e+00 785.0
7 TraesCS3B01G228100 chr3B 95.489 266 9 2 331 594 322354103 322354367 8.060000e-114 422.0
8 TraesCS3B01G228100 chr3B 89.172 314 34 0 2060 2373 119782103 119781790 6.320000e-105 392.0
9 TraesCS3B01G228100 chr3B 97.222 216 5 1 5426 5641 327810018 327810232 1.380000e-96 364.0
10 TraesCS3B01G228100 chr2B 96.956 4303 104 15 643 4939 320341077 320345358 0.000000e+00 7195.0
11 TraesCS3B01G228100 chr2B 96.722 1739 35 2 4987 6724 320345363 320347080 0.000000e+00 2876.0
12 TraesCS3B01G228100 chr2B 89.493 1066 92 10 1311 2373 520206603 520207651 0.000000e+00 1330.0
13 TraesCS3B01G228100 chr2B 96.622 296 9 1 334 628 320340463 320340758 2.180000e-134 490.0
14 TraesCS3B01G228100 chr2B 95.263 190 6 2 336 522 134306033 134305844 1.420000e-76 298.0
15 TraesCS3B01G228100 chr2B 94.444 126 7 0 4644 4769 49128606 49128731 1.910000e-45 195.0
16 TraesCS3B01G228100 chr2B 83.920 199 30 2 147 344 367272142 367271945 8.900000e-44 189.0
17 TraesCS3B01G228100 chr2B 92.424 66 2 2 3497 3559 546204114 546204049 2.580000e-14 91.6
18 TraesCS3B01G228100 chr6B 96.742 3960 123 6 2767 6724 462293657 462297612 0.000000e+00 6593.0
19 TraesCS3B01G228100 chr6B 93.996 2132 101 23 645 2771 462282808 462284917 0.000000e+00 3203.0
20 TraesCS3B01G228100 chr6B 87.281 456 37 7 6067 6521 123579693 123580128 1.010000e-137 501.0
21 TraesCS3B01G228100 chr6B 93.820 178 9 2 622 798 462282809 462282985 4.000000e-67 267.0
22 TraesCS3B01G228100 chr4D 96.955 3054 81 6 2368 5417 249168074 249165029 0.000000e+00 5114.0
23 TraesCS3B01G228100 chr4D 95.212 1629 69 6 700 2324 249193623 249192000 0.000000e+00 2567.0
24 TraesCS3B01G228100 chr4D 94.325 652 28 4 4767 5417 266761251 266760608 0.000000e+00 990.0
25 TraesCS3B01G228100 chr4D 98.246 171 3 0 6554 6724 192252468 192252298 3.940000e-77 300.0
26 TraesCS3B01G228100 chr4D 87.845 181 20 2 147 325 274232135 274232315 1.900000e-50 211.0
27 TraesCS3B01G228100 chr4D 78.857 175 23 10 336 506 249194325 249194161 9.220000e-19 106.0
28 TraesCS3B01G228100 chr4D 93.750 64 4 0 5979 6042 249136493 249136556 5.550000e-16 97.1
29 TraesCS3B01G228100 chr2A 93.132 1558 77 13 3081 4631 645828503 645826969 0.000000e+00 2257.0
30 TraesCS3B01G228100 chr2A 90.366 1038 60 11 3212 4243 356885362 356884359 0.000000e+00 1327.0
31 TraesCS3B01G228100 chr2A 92.355 654 28 9 4765 5417 380539259 380539891 0.000000e+00 911.0
32 TraesCS3B01G228100 chr2A 93.075 491 28 3 5493 5982 279780089 279780574 0.000000e+00 713.0
33 TraesCS3B01G228100 chr2A 91.479 399 23 5 4240 4631 356875661 356875267 7.670000e-149 538.0
34 TraesCS3B01G228100 chr2D 94.341 1343 50 3 1752 3073 298537645 298538982 0.000000e+00 2036.0
35 TraesCS3B01G228100 chr5A 93.173 1245 66 7 999 2242 122832925 122834151 0.000000e+00 1810.0
36 TraesCS3B01G228100 chr5A 82.633 357 40 17 2369 2705 80929827 80930181 5.100000e-76 296.0
37 TraesCS3B01G228100 chr5A 90.184 163 14 2 447 609 274964720 274964880 1.900000e-50 211.0
38 TraesCS3B01G228100 chr4B 89.839 1427 120 21 542 1964 442238465 442237060 0.000000e+00 1808.0
39 TraesCS3B01G228100 chr4B 92.665 968 60 10 999 1964 167719133 167718175 0.000000e+00 1384.0
40 TraesCS3B01G228100 chr4B 92.189 973 65 10 994 1964 427399140 427398177 0.000000e+00 1365.0
41 TraesCS3B01G228100 chr4B 95.392 651 27 3 6074 6724 287898086 287897439 0.000000e+00 1033.0
42 TraesCS3B01G228100 chr4B 93.182 396 20 1 5426 5814 465832701 465833096 5.850000e-160 575.0
43 TraesCS3B01G228100 chr4B 82.624 282 37 7 469 750 442238583 442238314 8.710000e-59 239.0
44 TraesCS3B01G228100 chr4B 95.238 126 6 0 4644 4769 241686415 241686540 4.110000e-47 200.0
45 TraesCS3B01G228100 chr4B 93.750 112 5 2 331 440 413716770 413716881 4.170000e-37 167.0
46 TraesCS3B01G228100 chr4B 91.011 89 4 3 331 416 335193517 335193604 4.260000e-22 117.0
47 TraesCS3B01G228100 chr4B 92.593 81 3 2 331 410 536485532 536485454 5.510000e-21 113.0
48 TraesCS3B01G228100 chr4B 89.888 89 4 5 331 416 279963404 279963490 7.130000e-20 110.0
49 TraesCS3B01G228100 chr4B 93.750 64 4 0 5979 6042 240639650 240639587 5.550000e-16 97.1
50 TraesCS3B01G228100 chr6A 89.363 1194 74 14 3134 4314 587377950 587376797 0.000000e+00 1452.0
51 TraesCS3B01G228100 chr6A 92.627 651 27 8 4767 5417 121236176 121236805 0.000000e+00 917.0
52 TraesCS3B01G228100 chr6A 88.462 728 40 15 2369 3066 11893417 11894130 0.000000e+00 839.0
53 TraesCS3B01G228100 chr6A 96.491 171 6 0 6554 6724 409741156 409741326 3.970000e-72 283.0
54 TraesCS3B01G228100 chr6A 94.444 126 7 0 4644 4769 356107068 356106943 1.910000e-45 195.0
55 TraesCS3B01G228100 chr3D 90.939 905 47 16 3081 3953 288639393 288640294 0.000000e+00 1184.0
56 TraesCS3B01G228100 chr1B 95.903 659 25 2 6067 6724 327716091 327716748 0.000000e+00 1066.0
57 TraesCS3B01G228100 chr1B 89.451 474 36 6 4764 5237 303012908 303013367 2.700000e-163 586.0
58 TraesCS3B01G228100 chr1B 88.462 312 20 6 1 300 82073931 82073624 4.960000e-96 363.0
59 TraesCS3B01G228100 chr1B 84.615 195 28 2 5790 5982 220393084 220393278 6.880000e-45 193.0
60 TraesCS3B01G228100 chr5B 90.213 797 36 23 3081 3872 636464085 636463326 0.000000e+00 1002.0
61 TraesCS3B01G228100 chr5B 91.858 565 32 7 5426 5982 430299647 430300205 0.000000e+00 776.0
62 TraesCS3B01G228100 chr5B 91.002 489 35 5 4148 4631 88875677 88875193 0.000000e+00 651.0
63 TraesCS3B01G228100 chr5B 90.506 474 31 5 4764 5237 235763199 235762740 1.240000e-171 614.0
64 TraesCS3B01G228100 chr7B 89.727 769 50 4 4649 5417 90425863 90426602 0.000000e+00 955.0
65 TraesCS3B01G228100 chr7B 94.064 219 6 2 5199 5417 666894866 666894655 6.500000e-85 326.0
66 TraesCS3B01G228100 chr7B 94.937 79 0 3 336 411 428791699 428791622 3.290000e-23 121.0
67 TraesCS3B01G228100 chr3A 92.249 658 31 9 6067 6724 301064864 301064227 0.000000e+00 915.0
68 TraesCS3B01G228100 chr3A 94.501 491 25 2 5493 5982 596167131 596166642 0.000000e+00 756.0
69 TraesCS3B01G228100 chr3A 91.282 390 33 1 6067 6456 39916341 39916729 1.280000e-146 531.0
70 TraesCS3B01G228100 chr6D 89.280 625 52 11 653 1276 366992772 366992162 0.000000e+00 769.0
71 TraesCS3B01G228100 chr6D 92.164 536 26 5 2532 3066 10401067 10401587 0.000000e+00 743.0
72 TraesCS3B01G228100 chr6D 84.536 291 27 11 3134 3410 301256414 301256700 8.590000e-69 272.0
73 TraesCS3B01G228100 chr6D 83.137 255 25 13 331 580 366993358 366993117 4.080000e-52 217.0
74 TraesCS3B01G228100 chr6D 93.651 63 4 0 5979 6041 428045707 428045645 2.000000e-15 95.3
75 TraesCS3B01G228100 chr5D 90.287 453 26 6 4965 5417 53010110 53009676 1.630000e-160 577.0
76 TraesCS3B01G228100 chr5D 91.667 84 3 2 331 411 18549360 18549442 5.510000e-21 113.0
77 TraesCS3B01G228100 chr7D 89.812 373 19 8 2537 2890 176344491 176344863 1.710000e-125 460.0
78 TraesCS3B01G228100 chr7D 81.529 314 40 12 39 343 468269266 468268962 6.740000e-60 243.0
79 TraesCS3B01G228100 chr7D 88.235 170 20 0 173 342 468268960 468268791 3.180000e-48 204.0
80 TraesCS3B01G228100 chr7D 98.438 64 1 0 5979 6042 289566011 289566074 5.510000e-21 113.0
81 TraesCS3B01G228100 chr7D 98.438 64 1 0 5979 6042 291384186 291384123 5.510000e-21 113.0
82 TraesCS3B01G228100 chr4A 89.008 373 22 8 2537 2890 242661014 242660642 1.720000e-120 444.0
83 TraesCS3B01G228100 chr7A 86.378 323 30 11 3957 4277 327389207 327389517 2.320000e-89 340.0
84 TraesCS3B01G228100 chr1D 80.952 147 22 4 4407 4549 6326894 6326750 1.980000e-20 111.0
85 TraesCS3B01G228100 chrUn 80.000 145 29 0 185 329 468947957 468947813 2.560000e-19 108.0
86 TraesCS3B01G228100 chrUn 81.818 110 8 8 6494 6591 77287320 77287211 1.550000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G228100 chr3B 328466448 328473171 6723 False 12417.000000 12417 100.000000 1 6724 1 chr3B.!!$F3 6723
1 TraesCS3B01G228100 chr3B 632785826 632791900 6074 False 9836.000000 9836 95.890000 647 6724 1 chr3B.!!$F5 6077
2 TraesCS3B01G228100 chr3B 322354103 322359026 4923 False 3600.000000 6778 95.360000 331 4914 2 chr3B.!!$F6 4583
3 TraesCS3B01G228100 chr3B 347919169 347920102 933 True 1400.000000 1400 93.515000 3081 4034 1 chr3B.!!$R2 953
4 TraesCS3B01G228100 chr3B 85699885 85700500 615 False 983.000000 983 95.462000 5426 6042 1 chr3B.!!$F1 616
5 TraesCS3B01G228100 chr3B 628846900 628847545 645 False 955.000000 955 93.161000 6067 6724 1 chr3B.!!$F4 657
6 TraesCS3B01G228100 chr3B 456612470 456613157 687 True 785.000000 785 88.034000 2369 3035 1 chr3B.!!$R3 666
7 TraesCS3B01G228100 chr2B 320340463 320347080 6617 False 3520.333333 7195 96.766667 334 6724 3 chr2B.!!$F3 6390
8 TraesCS3B01G228100 chr2B 520206603 520207651 1048 False 1330.000000 1330 89.493000 1311 2373 1 chr2B.!!$F2 1062
9 TraesCS3B01G228100 chr6B 462293657 462297612 3955 False 6593.000000 6593 96.742000 2767 6724 1 chr6B.!!$F2 3957
10 TraesCS3B01G228100 chr6B 462282808 462284917 2109 False 1735.000000 3203 93.908000 622 2771 2 chr6B.!!$F3 2149
11 TraesCS3B01G228100 chr4D 249165029 249168074 3045 True 5114.000000 5114 96.955000 2368 5417 1 chr4D.!!$R2 3049
12 TraesCS3B01G228100 chr4D 249192000 249194325 2325 True 1336.500000 2567 87.034500 336 2324 2 chr4D.!!$R4 1988
13 TraesCS3B01G228100 chr4D 266760608 266761251 643 True 990.000000 990 94.325000 4767 5417 1 chr4D.!!$R3 650
14 TraesCS3B01G228100 chr2A 645826969 645828503 1534 True 2257.000000 2257 93.132000 3081 4631 1 chr2A.!!$R3 1550
15 TraesCS3B01G228100 chr2A 356884359 356885362 1003 True 1327.000000 1327 90.366000 3212 4243 1 chr2A.!!$R2 1031
16 TraesCS3B01G228100 chr2A 380539259 380539891 632 False 911.000000 911 92.355000 4765 5417 1 chr2A.!!$F2 652
17 TraesCS3B01G228100 chr2D 298537645 298538982 1337 False 2036.000000 2036 94.341000 1752 3073 1 chr2D.!!$F1 1321
18 TraesCS3B01G228100 chr5A 122832925 122834151 1226 False 1810.000000 1810 93.173000 999 2242 1 chr5A.!!$F2 1243
19 TraesCS3B01G228100 chr4B 167718175 167719133 958 True 1384.000000 1384 92.665000 999 1964 1 chr4B.!!$R1 965
20 TraesCS3B01G228100 chr4B 427398177 427399140 963 True 1365.000000 1365 92.189000 994 1964 1 chr4B.!!$R4 970
21 TraesCS3B01G228100 chr4B 287897439 287898086 647 True 1033.000000 1033 95.392000 6074 6724 1 chr4B.!!$R3 650
22 TraesCS3B01G228100 chr4B 442237060 442238583 1523 True 1023.500000 1808 86.231500 469 1964 2 chr4B.!!$R6 1495
23 TraesCS3B01G228100 chr6A 587376797 587377950 1153 True 1452.000000 1452 89.363000 3134 4314 1 chr6A.!!$R2 1180
24 TraesCS3B01G228100 chr6A 121236176 121236805 629 False 917.000000 917 92.627000 4767 5417 1 chr6A.!!$F2 650
25 TraesCS3B01G228100 chr6A 11893417 11894130 713 False 839.000000 839 88.462000 2369 3066 1 chr6A.!!$F1 697
26 TraesCS3B01G228100 chr3D 288639393 288640294 901 False 1184.000000 1184 90.939000 3081 3953 1 chr3D.!!$F1 872
27 TraesCS3B01G228100 chr1B 327716091 327716748 657 False 1066.000000 1066 95.903000 6067 6724 1 chr1B.!!$F3 657
28 TraesCS3B01G228100 chr5B 636463326 636464085 759 True 1002.000000 1002 90.213000 3081 3872 1 chr5B.!!$R3 791
29 TraesCS3B01G228100 chr5B 430299647 430300205 558 False 776.000000 776 91.858000 5426 5982 1 chr5B.!!$F1 556
30 TraesCS3B01G228100 chr7B 90425863 90426602 739 False 955.000000 955 89.727000 4649 5417 1 chr7B.!!$F1 768
31 TraesCS3B01G228100 chr3A 301064227 301064864 637 True 915.000000 915 92.249000 6067 6724 1 chr3A.!!$R1 657
32 TraesCS3B01G228100 chr6D 10401067 10401587 520 False 743.000000 743 92.164000 2532 3066 1 chr6D.!!$F1 534
33 TraesCS3B01G228100 chr6D 366992162 366993358 1196 True 493.000000 769 86.208500 331 1276 2 chr6D.!!$R2 945

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
42 43 0.035439 GGTGGGAAAGCGAGATGGAA 60.035 55.000 0.00 0.00 0.00 3.53 F
166 167 0.036952 CTAGTGCCTGTCCACCACTG 60.037 60.000 3.02 0.00 39.88 3.66 F
289 290 0.042188 CCAACACGAACAAGTGCTCG 60.042 55.000 2.71 2.71 45.45 5.03 F
290 291 0.650512 CAACACGAACAAGTGCTCGT 59.349 50.000 4.01 4.01 46.22 4.18 F
2218 2601 1.045407 TGGCCAACTACAGTTCTCGT 58.955 50.000 0.61 0.00 35.83 4.18 F
2272 2655 0.038166 CCACCATGGTTACTGGCAGT 59.962 55.000 25.34 25.34 37.27 4.40 F
3038 3484 1.619332 TCATGGTGCGGTTACTACACA 59.381 47.619 9.62 0.00 36.00 3.72 F
4216 4715 1.228956 TACAGTGTAGGCCCGGTGT 60.229 57.895 0.00 0.00 0.00 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1084 1452 3.065371 GTCAGGTTATTTCATGGAAGGCG 59.935 47.826 0.00 0.0 0.00 5.52 R
2145 2528 2.093658 GGAAGTGATTACGGGAAGCAGA 60.094 50.000 0.00 0.0 33.09 4.26 R
2157 2540 2.169832 CACACGAGGTGGAAGTGATT 57.830 50.000 1.63 0.0 44.04 2.57 R
2272 2655 2.664851 CGCGCTCCACTTGGACAA 60.665 61.111 5.56 0.0 39.78 3.18 R
4195 4694 1.255667 ACCGGGCCTACACTGTACTG 61.256 60.000 6.32 0.0 0.00 2.74 R
4216 4715 2.881528 GCCATTTGTGCAGGGCCAA 61.882 57.895 6.18 0.0 40.55 4.52 R
4805 5312 1.358759 GTGTCGGTTTGGTGCTTGG 59.641 57.895 0.00 0.0 0.00 3.61 R
6132 6649 2.609610 CGGAAGGAGGGGTTGGGA 60.610 66.667 0.00 0.0 0.00 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.461300 TGAGGGACATAGGTCTGAGG 57.539 55.000 7.56 0.00 43.77 3.86
20 21 1.044611 GAGGGACATAGGTCTGAGGC 58.955 60.000 7.56 0.00 43.77 4.70
21 22 0.339859 AGGGACATAGGTCTGAGGCA 59.660 55.000 7.56 0.00 43.77 4.75
22 23 0.755686 GGGACATAGGTCTGAGGCAG 59.244 60.000 7.56 0.00 43.77 4.85
23 24 0.755686 GGACATAGGTCTGAGGCAGG 59.244 60.000 7.56 0.00 43.77 4.85
24 25 0.755686 GACATAGGTCTGAGGCAGGG 59.244 60.000 0.00 0.00 40.99 4.45
25 26 0.043334 ACATAGGTCTGAGGCAGGGT 59.957 55.000 0.00 0.00 31.51 4.34
26 27 0.467384 CATAGGTCTGAGGCAGGGTG 59.533 60.000 0.00 0.00 31.51 4.61
27 28 0.692419 ATAGGTCTGAGGCAGGGTGG 60.692 60.000 0.00 0.00 31.51 4.61
28 29 2.822643 TAGGTCTGAGGCAGGGTGGG 62.823 65.000 0.00 0.00 31.51 4.61
29 30 2.607750 GTCTGAGGCAGGGTGGGA 60.608 66.667 0.00 0.00 31.51 4.37
30 31 2.206900 TCTGAGGCAGGGTGGGAA 59.793 61.111 0.00 0.00 31.51 3.97
31 32 1.463214 TCTGAGGCAGGGTGGGAAA 60.463 57.895 0.00 0.00 31.51 3.13
32 33 1.001641 CTGAGGCAGGGTGGGAAAG 60.002 63.158 0.00 0.00 0.00 2.62
33 34 2.361737 GAGGCAGGGTGGGAAAGC 60.362 66.667 0.00 0.00 0.00 3.51
34 35 4.351054 AGGCAGGGTGGGAAAGCG 62.351 66.667 0.00 0.00 0.00 4.68
35 36 4.344865 GGCAGGGTGGGAAAGCGA 62.345 66.667 0.00 0.00 0.00 4.93
36 37 2.747855 GCAGGGTGGGAAAGCGAG 60.748 66.667 0.00 0.00 0.00 5.03
37 38 3.068881 CAGGGTGGGAAAGCGAGA 58.931 61.111 0.00 0.00 0.00 4.04
38 39 1.604378 CAGGGTGGGAAAGCGAGAT 59.396 57.895 0.00 0.00 0.00 2.75
39 40 0.745845 CAGGGTGGGAAAGCGAGATG 60.746 60.000 0.00 0.00 0.00 2.90
40 41 1.452108 GGGTGGGAAAGCGAGATGG 60.452 63.158 0.00 0.00 0.00 3.51
41 42 1.602237 GGTGGGAAAGCGAGATGGA 59.398 57.895 0.00 0.00 0.00 3.41
42 43 0.035439 GGTGGGAAAGCGAGATGGAA 60.035 55.000 0.00 0.00 0.00 3.53
43 44 1.373570 GTGGGAAAGCGAGATGGAAG 58.626 55.000 0.00 0.00 0.00 3.46
44 45 1.066143 GTGGGAAAGCGAGATGGAAGA 60.066 52.381 0.00 0.00 0.00 2.87
45 46 1.066143 TGGGAAAGCGAGATGGAAGAC 60.066 52.381 0.00 0.00 0.00 3.01
46 47 1.657822 GGAAAGCGAGATGGAAGACC 58.342 55.000 0.00 0.00 0.00 3.85
84 85 7.375106 AGTTGAGTATATATAGGTCGAACGG 57.625 40.000 0.00 0.00 0.00 4.44
85 86 6.939163 AGTTGAGTATATATAGGTCGAACGGT 59.061 38.462 0.00 0.00 0.00 4.83
86 87 7.446625 AGTTGAGTATATATAGGTCGAACGGTT 59.553 37.037 0.00 0.00 0.00 4.44
87 88 7.369803 TGAGTATATATAGGTCGAACGGTTC 57.630 40.000 10.83 10.83 0.00 3.62
88 89 7.164122 TGAGTATATATAGGTCGAACGGTTCT 58.836 38.462 17.94 2.76 0.00 3.01
89 90 7.332926 TGAGTATATATAGGTCGAACGGTTCTC 59.667 40.741 17.94 10.84 0.00 2.87
90 91 5.893897 ATATATAGGTCGAACGGTTCTCC 57.106 43.478 17.94 17.94 0.00 3.71
91 92 1.843368 ATAGGTCGAACGGTTCTCCA 58.157 50.000 23.53 14.84 0.00 3.86
92 93 1.619654 TAGGTCGAACGGTTCTCCAA 58.380 50.000 23.53 6.45 0.00 3.53
93 94 0.754472 AGGTCGAACGGTTCTCCAAA 59.246 50.000 23.53 4.54 0.00 3.28
94 95 1.346722 AGGTCGAACGGTTCTCCAAAT 59.653 47.619 23.53 9.18 0.00 2.32
95 96 2.564062 AGGTCGAACGGTTCTCCAAATA 59.436 45.455 23.53 1.84 0.00 1.40
96 97 3.197116 AGGTCGAACGGTTCTCCAAATAT 59.803 43.478 23.53 8.68 0.00 1.28
97 98 3.554731 GGTCGAACGGTTCTCCAAATATC 59.445 47.826 17.94 0.00 0.00 1.63
98 99 3.554731 GTCGAACGGTTCTCCAAATATCC 59.445 47.826 17.94 0.00 0.00 2.59
99 100 2.870411 CGAACGGTTCTCCAAATATCCC 59.130 50.000 17.94 0.00 0.00 3.85
100 101 2.614829 ACGGTTCTCCAAATATCCCG 57.385 50.000 0.00 0.00 39.75 5.14
101 102 2.112998 ACGGTTCTCCAAATATCCCGA 58.887 47.619 0.00 0.00 37.43 5.14
102 103 2.502538 ACGGTTCTCCAAATATCCCGAA 59.497 45.455 0.00 0.00 37.43 4.30
103 104 2.870411 CGGTTCTCCAAATATCCCGAAC 59.130 50.000 0.00 0.00 36.12 3.95
104 105 3.211865 GGTTCTCCAAATATCCCGAACC 58.788 50.000 0.00 0.00 42.23 3.62
105 106 3.211865 GTTCTCCAAATATCCCGAACCC 58.788 50.000 0.00 0.00 0.00 4.11
106 107 2.771688 TCTCCAAATATCCCGAACCCT 58.228 47.619 0.00 0.00 0.00 4.34
107 108 3.120108 TCTCCAAATATCCCGAACCCTT 58.880 45.455 0.00 0.00 0.00 3.95
108 109 3.526019 TCTCCAAATATCCCGAACCCTTT 59.474 43.478 0.00 0.00 0.00 3.11
109 110 3.626930 TCCAAATATCCCGAACCCTTTG 58.373 45.455 0.00 0.00 0.00 2.77
110 111 3.267291 TCCAAATATCCCGAACCCTTTGA 59.733 43.478 0.00 0.00 0.00 2.69
111 112 4.020543 CCAAATATCCCGAACCCTTTGAA 58.979 43.478 0.00 0.00 0.00 2.69
112 113 4.142249 CCAAATATCCCGAACCCTTTGAAC 60.142 45.833 0.00 0.00 0.00 3.18
113 114 2.793288 TATCCCGAACCCTTTGAACC 57.207 50.000 0.00 0.00 0.00 3.62
114 115 0.322187 ATCCCGAACCCTTTGAACCG 60.322 55.000 0.00 0.00 0.00 4.44
115 116 1.071814 CCCGAACCCTTTGAACCGA 59.928 57.895 0.00 0.00 0.00 4.69
116 117 0.322187 CCCGAACCCTTTGAACCGAT 60.322 55.000 0.00 0.00 0.00 4.18
117 118 1.530323 CCGAACCCTTTGAACCGATT 58.470 50.000 0.00 0.00 0.00 3.34
118 119 1.199097 CCGAACCCTTTGAACCGATTG 59.801 52.381 0.00 0.00 0.00 2.67
119 120 1.401018 CGAACCCTTTGAACCGATTGC 60.401 52.381 0.00 0.00 0.00 3.56
120 121 1.611491 GAACCCTTTGAACCGATTGCA 59.389 47.619 0.00 0.00 0.00 4.08
121 122 1.247567 ACCCTTTGAACCGATTGCAG 58.752 50.000 0.00 0.00 0.00 4.41
122 123 0.527565 CCCTTTGAACCGATTGCAGG 59.472 55.000 0.00 0.00 0.00 4.85
123 124 1.247567 CCTTTGAACCGATTGCAGGT 58.752 50.000 0.00 0.00 45.29 4.00
124 125 1.068333 CCTTTGAACCGATTGCAGGTG 60.068 52.381 0.00 0.00 41.95 4.00
125 126 0.958091 TTTGAACCGATTGCAGGTGG 59.042 50.000 0.00 0.00 41.95 4.61
126 127 0.893270 TTGAACCGATTGCAGGTGGG 60.893 55.000 0.00 0.00 41.95 4.61
127 128 1.002624 GAACCGATTGCAGGTGGGA 60.003 57.895 8.80 0.00 41.95 4.37
128 129 1.303317 AACCGATTGCAGGTGGGAC 60.303 57.895 8.80 0.00 41.95 4.46
129 130 2.438434 CCGATTGCAGGTGGGACC 60.438 66.667 0.00 0.00 38.99 4.46
130 131 2.438434 CGATTGCAGGTGGGACCC 60.438 66.667 2.45 2.45 39.75 4.46
131 132 2.971598 CGATTGCAGGTGGGACCCT 61.972 63.158 13.00 0.00 39.75 4.34
132 133 1.622607 CGATTGCAGGTGGGACCCTA 61.623 60.000 13.00 0.00 39.75 3.53
133 134 0.107165 GATTGCAGGTGGGACCCTAC 60.107 60.000 13.00 8.27 39.75 3.18
134 135 1.571773 ATTGCAGGTGGGACCCTACC 61.572 60.000 19.29 19.29 39.75 3.18
137 138 2.285442 AGGTGGGACCCTACCTGC 60.285 66.667 25.48 6.75 45.30 4.85
138 139 3.408853 GGTGGGACCCTACCTGCC 61.409 72.222 19.52 6.89 34.11 4.85
139 140 3.782443 GTGGGACCCTACCTGCCG 61.782 72.222 13.00 0.00 0.00 5.69
141 142 4.791069 GGGACCCTACCTGCCGGA 62.791 72.222 5.05 0.00 0.00 5.14
142 143 3.468140 GGACCCTACCTGCCGGAC 61.468 72.222 5.05 0.00 0.00 4.79
143 144 2.363925 GACCCTACCTGCCGGACT 60.364 66.667 5.05 0.00 0.00 3.85
144 145 2.683933 ACCCTACCTGCCGGACTG 60.684 66.667 5.05 0.03 0.00 3.51
145 146 2.683933 CCCTACCTGCCGGACTGT 60.684 66.667 5.05 0.00 0.00 3.55
146 147 2.722201 CCCTACCTGCCGGACTGTC 61.722 68.421 5.05 0.00 0.00 3.51
147 148 2.722201 CCTACCTGCCGGACTGTCC 61.722 68.421 16.99 16.99 0.00 4.02
148 149 1.682684 CTACCTGCCGGACTGTCCT 60.683 63.158 23.49 7.22 33.30 3.85
149 150 0.395311 CTACCTGCCGGACTGTCCTA 60.395 60.000 23.49 9.69 33.30 2.94
150 151 0.395311 TACCTGCCGGACTGTCCTAG 60.395 60.000 23.49 17.38 33.30 3.02
151 152 1.682684 CCTGCCGGACTGTCCTAGT 60.683 63.158 23.49 0.00 44.02 2.57
152 153 1.513158 CTGCCGGACTGTCCTAGTG 59.487 63.158 23.49 8.69 40.53 2.74
153 154 2.184579 GCCGGACTGTCCTAGTGC 59.815 66.667 23.49 16.16 43.62 4.40
154 155 2.893398 CCGGACTGTCCTAGTGCC 59.107 66.667 23.49 0.00 44.13 5.01
155 156 1.682684 CCGGACTGTCCTAGTGCCT 60.683 63.158 23.49 0.00 44.13 4.75
156 157 1.513158 CGGACTGTCCTAGTGCCTG 59.487 63.158 23.49 2.68 44.13 4.85
157 158 1.251527 CGGACTGTCCTAGTGCCTGT 61.252 60.000 23.49 0.00 44.13 4.00
158 159 0.533032 GGACTGTCCTAGTGCCTGTC 59.467 60.000 19.53 0.00 41.47 3.51
159 160 0.533032 GACTGTCCTAGTGCCTGTCC 59.467 60.000 0.00 0.00 40.53 4.02
160 161 0.178932 ACTGTCCTAGTGCCTGTCCA 60.179 55.000 0.00 0.00 38.49 4.02
161 162 0.247736 CTGTCCTAGTGCCTGTCCAC 59.752 60.000 0.00 0.00 35.98 4.02
162 163 1.192146 TGTCCTAGTGCCTGTCCACC 61.192 60.000 0.00 0.00 36.38 4.61
163 164 1.157513 TCCTAGTGCCTGTCCACCA 59.842 57.895 0.00 0.00 36.38 4.17
164 165 1.192146 TCCTAGTGCCTGTCCACCAC 61.192 60.000 0.00 0.00 36.38 4.16
165 166 1.194781 CCTAGTGCCTGTCCACCACT 61.195 60.000 0.00 0.00 42.10 4.00
166 167 0.036952 CTAGTGCCTGTCCACCACTG 60.037 60.000 3.02 0.00 39.88 3.66
167 168 0.762842 TAGTGCCTGTCCACCACTGT 60.763 55.000 3.02 0.00 39.88 3.55
168 169 1.893808 GTGCCTGTCCACCACTGTG 60.894 63.158 0.00 0.00 42.39 3.66
169 170 2.980233 GCCTGTCCACCACTGTGC 60.980 66.667 1.29 0.00 41.35 4.57
170 171 2.281761 CCTGTCCACCACTGTGCC 60.282 66.667 1.29 0.00 41.35 5.01
171 172 2.281761 CTGTCCACCACTGTGCCC 60.282 66.667 1.29 0.00 41.35 5.36
172 173 4.248842 TGTCCACCACTGTGCCCG 62.249 66.667 1.29 0.00 41.35 6.13
191 192 2.441532 GCAGGCAGCATGGTCCAT 60.442 61.111 9.52 0.00 44.79 3.41
192 193 2.487532 GCAGGCAGCATGGTCCATC 61.488 63.158 9.52 0.00 44.79 3.51
193 194 1.226542 CAGGCAGCATGGTCCATCT 59.773 57.895 0.00 0.00 35.86 2.90
194 195 0.395311 CAGGCAGCATGGTCCATCTT 60.395 55.000 0.00 0.00 35.86 2.40
195 196 0.395311 AGGCAGCATGGTCCATCTTG 60.395 55.000 0.00 4.64 35.86 3.02
196 197 0.682209 GGCAGCATGGTCCATCTTGT 60.682 55.000 0.00 0.00 35.86 3.16
197 198 0.454600 GCAGCATGGTCCATCTTGTG 59.545 55.000 0.00 0.00 35.86 3.33
198 199 1.830279 CAGCATGGTCCATCTTGTGT 58.170 50.000 0.00 0.00 0.00 3.72
199 200 2.165167 CAGCATGGTCCATCTTGTGTT 58.835 47.619 0.00 0.00 0.00 3.32
200 201 3.346315 CAGCATGGTCCATCTTGTGTTA 58.654 45.455 0.00 0.00 0.00 2.41
201 202 3.949754 CAGCATGGTCCATCTTGTGTTAT 59.050 43.478 0.00 0.00 0.00 1.89
202 203 5.125356 CAGCATGGTCCATCTTGTGTTATA 58.875 41.667 0.00 0.00 0.00 0.98
203 204 5.589855 CAGCATGGTCCATCTTGTGTTATAA 59.410 40.000 0.00 0.00 0.00 0.98
204 205 6.095300 CAGCATGGTCCATCTTGTGTTATAAA 59.905 38.462 0.00 0.00 0.00 1.40
205 206 6.663093 AGCATGGTCCATCTTGTGTTATAAAA 59.337 34.615 0.00 0.00 0.00 1.52
206 207 6.974622 GCATGGTCCATCTTGTGTTATAAAAG 59.025 38.462 0.00 0.00 0.00 2.27
207 208 7.483307 CATGGTCCATCTTGTGTTATAAAAGG 58.517 38.462 0.00 0.00 0.00 3.11
208 209 6.785076 TGGTCCATCTTGTGTTATAAAAGGA 58.215 36.000 0.00 0.00 0.00 3.36
209 210 7.235079 TGGTCCATCTTGTGTTATAAAAGGAA 58.765 34.615 0.00 0.00 0.00 3.36
210 211 7.726291 TGGTCCATCTTGTGTTATAAAAGGAAA 59.274 33.333 0.00 0.00 0.00 3.13
211 212 8.749354 GGTCCATCTTGTGTTATAAAAGGAAAT 58.251 33.333 0.00 0.00 0.00 2.17
255 256 7.910441 ACATGAAAATGCAAATAAGGAAAGG 57.090 32.000 0.00 0.00 0.00 3.11
256 257 6.880529 ACATGAAAATGCAAATAAGGAAAGGG 59.119 34.615 0.00 0.00 0.00 3.95
257 258 5.803552 TGAAAATGCAAATAAGGAAAGGGG 58.196 37.500 0.00 0.00 0.00 4.79
258 259 5.545723 TGAAAATGCAAATAAGGAAAGGGGA 59.454 36.000 0.00 0.00 0.00 4.81
259 260 5.682234 AAATGCAAATAAGGAAAGGGGAG 57.318 39.130 0.00 0.00 0.00 4.30
260 261 3.100207 TGCAAATAAGGAAAGGGGAGG 57.900 47.619 0.00 0.00 0.00 4.30
261 262 2.292192 TGCAAATAAGGAAAGGGGAGGG 60.292 50.000 0.00 0.00 0.00 4.30
262 263 2.024369 GCAAATAAGGAAAGGGGAGGGA 60.024 50.000 0.00 0.00 0.00 4.20
263 264 3.632333 CAAATAAGGAAAGGGGAGGGAC 58.368 50.000 0.00 0.00 0.00 4.46
264 265 1.908643 ATAAGGAAAGGGGAGGGACC 58.091 55.000 0.00 0.00 38.08 4.46
265 266 0.499147 TAAGGAAAGGGGAGGGACCA 59.501 55.000 0.00 0.00 41.20 4.02
266 267 0.846870 AAGGAAAGGGGAGGGACCAG 60.847 60.000 0.00 0.00 41.20 4.00
267 268 1.229853 GGAAAGGGGAGGGACCAGA 60.230 63.158 0.00 0.00 41.20 3.86
268 269 0.624795 GGAAAGGGGAGGGACCAGAT 60.625 60.000 0.00 0.00 41.20 2.90
269 270 0.840617 GAAAGGGGAGGGACCAGATC 59.159 60.000 0.00 0.00 41.20 2.75
277 278 4.617875 GGACCAGATCCCAACACG 57.382 61.111 0.00 0.00 42.46 4.49
278 279 1.980052 GGACCAGATCCCAACACGA 59.020 57.895 0.00 0.00 42.46 4.35
279 280 0.323629 GGACCAGATCCCAACACGAA 59.676 55.000 0.00 0.00 42.46 3.85
280 281 1.439679 GACCAGATCCCAACACGAAC 58.560 55.000 0.00 0.00 0.00 3.95
281 282 0.762418 ACCAGATCCCAACACGAACA 59.238 50.000 0.00 0.00 0.00 3.18
282 283 1.142060 ACCAGATCCCAACACGAACAA 59.858 47.619 0.00 0.00 0.00 2.83
283 284 1.806542 CCAGATCCCAACACGAACAAG 59.193 52.381 0.00 0.00 0.00 3.16
284 285 2.494059 CAGATCCCAACACGAACAAGT 58.506 47.619 0.00 0.00 0.00 3.16
285 286 2.224079 CAGATCCCAACACGAACAAGTG 59.776 50.000 0.00 0.00 46.83 3.16
286 287 0.951558 ATCCCAACACGAACAAGTGC 59.048 50.000 0.00 0.00 45.45 4.40
287 288 0.107410 TCCCAACACGAACAAGTGCT 60.107 50.000 0.00 0.00 45.45 4.40
288 289 0.307760 CCCAACACGAACAAGTGCTC 59.692 55.000 0.00 0.00 45.45 4.26
289 290 0.042188 CCAACACGAACAAGTGCTCG 60.042 55.000 2.71 2.71 45.45 5.03
290 291 0.650512 CAACACGAACAAGTGCTCGT 59.349 50.000 4.01 4.01 46.22 4.18
293 294 3.588277 ACGAACAAGTGCTCGTGAT 57.412 47.368 8.82 0.00 44.01 3.06
294 295 1.865865 ACGAACAAGTGCTCGTGATT 58.134 45.000 8.82 0.00 44.01 2.57
295 296 1.526887 ACGAACAAGTGCTCGTGATTG 59.473 47.619 8.82 3.50 44.01 2.67
296 297 1.722751 CGAACAAGTGCTCGTGATTGC 60.723 52.381 8.69 0.00 0.00 3.56
297 298 1.264020 GAACAAGTGCTCGTGATTGCA 59.736 47.619 8.69 0.00 36.79 4.08
298 299 1.527034 ACAAGTGCTCGTGATTGCAT 58.473 45.000 8.69 0.00 41.45 3.96
299 300 1.466167 ACAAGTGCTCGTGATTGCATC 59.534 47.619 8.69 0.00 41.45 3.91
300 301 1.089920 AAGTGCTCGTGATTGCATCC 58.910 50.000 0.00 0.00 41.45 3.51
301 302 1.086067 AGTGCTCGTGATTGCATCCG 61.086 55.000 0.00 0.00 41.45 4.18
302 303 2.325857 GCTCGTGATTGCATCCGC 59.674 61.111 0.00 0.00 39.24 5.54
303 304 3.017323 CTCGTGATTGCATCCGCC 58.983 61.111 0.00 0.00 37.32 6.13
304 305 2.513666 TCGTGATTGCATCCGCCC 60.514 61.111 0.00 0.00 37.32 6.13
305 306 2.514592 CGTGATTGCATCCGCCCT 60.515 61.111 0.00 0.00 37.32 5.19
306 307 1.227527 CGTGATTGCATCCGCCCTA 60.228 57.895 0.00 0.00 37.32 3.53
307 308 1.224069 CGTGATTGCATCCGCCCTAG 61.224 60.000 0.00 0.00 37.32 3.02
308 309 1.227943 TGATTGCATCCGCCCTAGC 60.228 57.895 0.00 0.00 37.32 3.42
320 321 2.596904 GCCCTAGCGAAGTGTCATAA 57.403 50.000 0.00 0.00 0.00 1.90
321 322 2.474816 GCCCTAGCGAAGTGTCATAAG 58.525 52.381 0.00 0.00 0.00 1.73
322 323 2.159085 GCCCTAGCGAAGTGTCATAAGT 60.159 50.000 0.00 0.00 0.00 2.24
323 324 3.679083 GCCCTAGCGAAGTGTCATAAGTT 60.679 47.826 0.00 0.00 0.00 2.66
324 325 4.504858 CCCTAGCGAAGTGTCATAAGTTT 58.495 43.478 0.00 0.00 0.00 2.66
325 326 4.330074 CCCTAGCGAAGTGTCATAAGTTTG 59.670 45.833 0.00 0.00 0.00 2.93
326 327 3.813529 AGCGAAGTGTCATAAGTTTGC 57.186 42.857 0.00 0.00 39.33 3.68
327 328 3.403038 AGCGAAGTGTCATAAGTTTGCT 58.597 40.909 1.45 1.45 42.81 3.91
328 329 3.815401 AGCGAAGTGTCATAAGTTTGCTT 59.185 39.130 1.45 0.00 44.43 3.91
329 330 4.083802 AGCGAAGTGTCATAAGTTTGCTTC 60.084 41.667 1.45 0.00 44.43 3.86
411 414 3.072211 CGTCCCTATATAGAGCACGACA 58.928 50.000 11.53 0.00 0.00 4.35
537 541 2.966732 CGCCACACCCCCACACTAT 61.967 63.158 0.00 0.00 0.00 2.12
882 1243 2.979676 CACAAGCTTCTGCGGCCA 60.980 61.111 2.24 0.00 45.42 5.36
1084 1452 6.509418 TTATTGCCACTGATTTCTTGTACC 57.491 37.500 0.00 0.00 0.00 3.34
1333 1706 7.148222 TGTGTATTTTTGTTCTTTGTTCTCCGA 60.148 33.333 0.00 0.00 0.00 4.55
1916 2296 3.874383 TCATTTCCTTCAGTTCCACCA 57.126 42.857 0.00 0.00 0.00 4.17
2145 2528 1.211457 GATGAAGGCCACCTGTGATCT 59.789 52.381 5.01 0.00 32.13 2.75
2157 2540 1.751351 CTGTGATCTCTGCTTCCCGTA 59.249 52.381 0.00 0.00 0.00 4.02
2218 2601 1.045407 TGGCCAACTACAGTTCTCGT 58.955 50.000 0.61 0.00 35.83 4.18
2272 2655 0.038166 CCACCATGGTTACTGGCAGT 59.962 55.000 25.34 25.34 37.27 4.40
2528 2932 5.809562 TGTTGCTTCGATTTTGTTGTTGATT 59.190 32.000 0.00 0.00 0.00 2.57
2582 3015 8.962884 AAAAGTTCAAATTTGCTAATTCCTGT 57.037 26.923 13.54 0.00 32.85 4.00
3038 3484 1.619332 TCATGGTGCGGTTACTACACA 59.381 47.619 9.62 0.00 36.00 3.72
3159 3608 9.706691 TTTCTCTATTAGTGTTTCTGTTAGTGG 57.293 33.333 0.00 0.00 0.00 4.00
3258 3711 6.808321 TCCAGGTTTACATTCTAGCATACT 57.192 37.500 0.00 0.00 0.00 2.12
3259 3712 7.195374 TCCAGGTTTACATTCTAGCATACTT 57.805 36.000 0.00 0.00 0.00 2.24
3379 3836 3.871594 GTGCGTGCTATTGTATCCTCTTT 59.128 43.478 0.00 0.00 0.00 2.52
3731 4224 5.688807 ACTCATATAAGCCCATGCATATCC 58.311 41.667 0.00 0.00 41.13 2.59
3882 4378 2.125552 CGATGACGAGCCAGGCAA 60.126 61.111 15.80 0.00 42.66 4.52
3884 4380 2.842394 CGATGACGAGCCAGGCAACT 62.842 60.000 15.80 0.00 46.84 3.16
4097 4594 6.536582 TGAGAGCTACAAAAATCATAGTGCTC 59.463 38.462 0.00 0.00 43.01 4.26
4155 4654 8.445361 AATAAAGTTAGAGGAGAAAGTACCCA 57.555 34.615 0.00 0.00 0.00 4.51
4195 4694 6.514063 AGAAGTACAAGTACACCTTTCTGAC 58.486 40.000 12.43 0.00 38.48 3.51
4205 4704 3.451178 ACACCTTTCTGACAGTACAGTGT 59.549 43.478 14.17 14.17 38.79 3.55
4216 4715 1.228956 TACAGTGTAGGCCCGGTGT 60.229 57.895 0.00 0.00 0.00 4.16
4261 4765 2.675423 TCAGCACGCTACCTCCGT 60.675 61.111 0.00 0.00 39.91 4.69
4294 4798 4.396790 TCCGTCCCTATTCAAATTTTTCCG 59.603 41.667 0.00 0.00 0.00 4.30
4400 4904 6.828273 AGCATAAGTTGATTGGCATTACTGTA 59.172 34.615 0.00 0.00 0.00 2.74
4421 4925 1.241165 CACTGATCAAGCCAACTGCA 58.759 50.000 0.00 0.00 44.83 4.41
4749 5256 9.738832 TCAGTGCAAACCTTATTTTAAGTTTAC 57.261 29.630 0.00 0.00 31.50 2.01
4805 5312 5.499139 TTTTTCCGGATCATCTTACATGC 57.501 39.130 4.15 0.00 0.00 4.06
5305 5812 1.272313 ACTGGATGTTGAGCATGGCTT 60.272 47.619 0.00 0.00 39.88 4.35
5917 6434 8.728833 AGTCATCTTGAAAATGCTAAAAGAGAG 58.271 33.333 0.00 0.00 30.90 3.20
6025 6542 4.520111 TGTGCTTGCTTATCACAAGTTCAT 59.480 37.500 5.50 0.00 45.09 2.57
6471 6988 9.047371 TGTTCAATTCAGTTTAGTTCGATGTAA 57.953 29.630 0.00 0.00 0.00 2.41
6490 7007 8.157813 CGATGTAATGCAAAAATTCTGAAACTG 58.842 33.333 0.00 0.00 0.00 3.16
6530 7047 2.746279 TGGGTTAGGGTAATGCATGG 57.254 50.000 0.00 0.00 0.00 3.66
6541 7060 4.261741 GGGTAATGCATGGCTGACTAATTG 60.262 45.833 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.339859 TGCCTCAGACCTATGTCCCT 59.660 55.000 0.00 0.00 42.81 4.20
3 4 0.755686 CTGCCTCAGACCTATGTCCC 59.244 60.000 0.00 0.00 42.81 4.46
4 5 0.755686 CCTGCCTCAGACCTATGTCC 59.244 60.000 0.00 0.00 42.81 4.02
5 6 0.755686 CCCTGCCTCAGACCTATGTC 59.244 60.000 0.00 0.00 42.09 3.06
6 7 0.043334 ACCCTGCCTCAGACCTATGT 59.957 55.000 0.00 0.00 32.44 2.29
7 8 0.467384 CACCCTGCCTCAGACCTATG 59.533 60.000 0.00 0.00 32.44 2.23
8 9 0.692419 CCACCCTGCCTCAGACCTAT 60.692 60.000 0.00 0.00 32.44 2.57
9 10 1.306141 CCACCCTGCCTCAGACCTA 60.306 63.158 0.00 0.00 32.44 3.08
10 11 2.608988 CCACCCTGCCTCAGACCT 60.609 66.667 0.00 0.00 32.44 3.85
11 12 3.721706 CCCACCCTGCCTCAGACC 61.722 72.222 0.00 0.00 32.44 3.85
12 13 1.779061 TTTCCCACCCTGCCTCAGAC 61.779 60.000 0.00 0.00 32.44 3.51
13 14 1.463214 TTTCCCACCCTGCCTCAGA 60.463 57.895 0.00 0.00 32.44 3.27
14 15 1.001641 CTTTCCCACCCTGCCTCAG 60.002 63.158 0.00 0.00 0.00 3.35
15 16 3.170362 CTTTCCCACCCTGCCTCA 58.830 61.111 0.00 0.00 0.00 3.86
16 17 2.361737 GCTTTCCCACCCTGCCTC 60.362 66.667 0.00 0.00 0.00 4.70
17 18 4.351054 CGCTTTCCCACCCTGCCT 62.351 66.667 0.00 0.00 0.00 4.75
18 19 4.344865 TCGCTTTCCCACCCTGCC 62.345 66.667 0.00 0.00 0.00 4.85
19 20 2.543067 ATCTCGCTTTCCCACCCTGC 62.543 60.000 0.00 0.00 0.00 4.85
20 21 0.745845 CATCTCGCTTTCCCACCCTG 60.746 60.000 0.00 0.00 0.00 4.45
21 22 1.604378 CATCTCGCTTTCCCACCCT 59.396 57.895 0.00 0.00 0.00 4.34
22 23 1.452108 CCATCTCGCTTTCCCACCC 60.452 63.158 0.00 0.00 0.00 4.61
23 24 0.035439 TTCCATCTCGCTTTCCCACC 60.035 55.000 0.00 0.00 0.00 4.61
24 25 1.066143 TCTTCCATCTCGCTTTCCCAC 60.066 52.381 0.00 0.00 0.00 4.61
25 26 1.066143 GTCTTCCATCTCGCTTTCCCA 60.066 52.381 0.00 0.00 0.00 4.37
26 27 1.657822 GTCTTCCATCTCGCTTTCCC 58.342 55.000 0.00 0.00 0.00 3.97
27 28 1.066143 TGGTCTTCCATCTCGCTTTCC 60.066 52.381 0.00 0.00 39.03 3.13
28 29 2.275318 CTGGTCTTCCATCTCGCTTTC 58.725 52.381 0.00 0.00 43.43 2.62
29 30 1.625818 ACTGGTCTTCCATCTCGCTTT 59.374 47.619 0.00 0.00 43.43 3.51
30 31 1.270907 ACTGGTCTTCCATCTCGCTT 58.729 50.000 0.00 0.00 43.43 4.68
31 32 1.270907 AACTGGTCTTCCATCTCGCT 58.729 50.000 0.00 0.00 43.43 4.93
32 33 2.100605 AAACTGGTCTTCCATCTCGC 57.899 50.000 0.00 0.00 43.43 5.03
33 34 6.743575 AAAATAAACTGGTCTTCCATCTCG 57.256 37.500 0.00 0.00 43.43 4.04
58 59 8.939929 CCGTTCGACCTATATATACTCAACTAA 58.060 37.037 0.00 0.00 0.00 2.24
59 60 8.097038 ACCGTTCGACCTATATATACTCAACTA 58.903 37.037 0.00 0.00 0.00 2.24
60 61 6.939163 ACCGTTCGACCTATATATACTCAACT 59.061 38.462 0.00 0.00 0.00 3.16
61 62 7.138692 ACCGTTCGACCTATATATACTCAAC 57.861 40.000 0.00 0.00 0.00 3.18
62 63 7.663081 AGAACCGTTCGACCTATATATACTCAA 59.337 37.037 5.62 0.00 34.02 3.02
63 64 7.164122 AGAACCGTTCGACCTATATATACTCA 58.836 38.462 5.62 0.00 34.02 3.41
64 65 7.201600 GGAGAACCGTTCGACCTATATATACTC 60.202 44.444 17.38 0.00 34.02 2.59
65 66 6.597280 GGAGAACCGTTCGACCTATATATACT 59.403 42.308 17.38 0.00 34.02 2.12
66 67 6.372659 TGGAGAACCGTTCGACCTATATATAC 59.627 42.308 21.91 0.55 39.42 1.47
67 68 6.475504 TGGAGAACCGTTCGACCTATATATA 58.524 40.000 21.91 0.00 39.42 0.86
68 69 5.319453 TGGAGAACCGTTCGACCTATATAT 58.681 41.667 21.91 0.00 39.42 0.86
69 70 4.717877 TGGAGAACCGTTCGACCTATATA 58.282 43.478 21.91 7.36 39.42 0.86
70 71 3.559069 TGGAGAACCGTTCGACCTATAT 58.441 45.455 21.91 0.19 39.42 0.86
71 72 3.003394 TGGAGAACCGTTCGACCTATA 57.997 47.619 21.91 7.86 39.42 1.31
72 73 1.843368 TGGAGAACCGTTCGACCTAT 58.157 50.000 21.91 1.40 39.42 2.57
73 74 1.619654 TTGGAGAACCGTTCGACCTA 58.380 50.000 21.91 15.87 39.42 3.08
74 75 0.754472 TTTGGAGAACCGTTCGACCT 59.246 50.000 21.91 2.31 39.42 3.85
75 76 1.804601 ATTTGGAGAACCGTTCGACC 58.195 50.000 17.65 17.65 39.42 4.79
76 77 3.554731 GGATATTTGGAGAACCGTTCGAC 59.445 47.826 5.62 3.83 39.42 4.20
77 78 3.431207 GGGATATTTGGAGAACCGTTCGA 60.431 47.826 5.62 0.00 39.42 3.71
78 79 2.870411 GGGATATTTGGAGAACCGTTCG 59.130 50.000 5.62 0.00 39.42 3.95
79 80 2.870411 CGGGATATTTGGAGAACCGTTC 59.130 50.000 2.81 2.81 39.42 3.95
80 81 2.502538 TCGGGATATTTGGAGAACCGTT 59.497 45.455 0.00 0.00 40.60 4.44
81 82 2.112998 TCGGGATATTTGGAGAACCGT 58.887 47.619 0.00 0.00 40.60 4.83
82 83 2.870411 GTTCGGGATATTTGGAGAACCG 59.130 50.000 0.00 0.00 41.06 4.44
83 84 3.211865 GGTTCGGGATATTTGGAGAACC 58.788 50.000 9.04 9.04 46.84 3.62
84 85 3.118000 AGGGTTCGGGATATTTGGAGAAC 60.118 47.826 0.00 0.00 37.74 3.01
85 86 3.120108 AGGGTTCGGGATATTTGGAGAA 58.880 45.455 0.00 0.00 0.00 2.87
86 87 2.771688 AGGGTTCGGGATATTTGGAGA 58.228 47.619 0.00 0.00 0.00 3.71
87 88 3.577805 AAGGGTTCGGGATATTTGGAG 57.422 47.619 0.00 0.00 0.00 3.86
88 89 3.267291 TCAAAGGGTTCGGGATATTTGGA 59.733 43.478 0.00 0.00 0.00 3.53
89 90 3.626930 TCAAAGGGTTCGGGATATTTGG 58.373 45.455 0.00 0.00 0.00 3.28
90 91 4.142249 GGTTCAAAGGGTTCGGGATATTTG 60.142 45.833 0.00 0.00 0.00 2.32
91 92 4.021229 GGTTCAAAGGGTTCGGGATATTT 58.979 43.478 0.00 0.00 0.00 1.40
92 93 3.628008 GGTTCAAAGGGTTCGGGATATT 58.372 45.455 0.00 0.00 0.00 1.28
93 94 2.420967 CGGTTCAAAGGGTTCGGGATAT 60.421 50.000 0.00 0.00 0.00 1.63
94 95 1.065998 CGGTTCAAAGGGTTCGGGATA 60.066 52.381 0.00 0.00 0.00 2.59
95 96 0.322187 CGGTTCAAAGGGTTCGGGAT 60.322 55.000 0.00 0.00 0.00 3.85
96 97 1.071814 CGGTTCAAAGGGTTCGGGA 59.928 57.895 0.00 0.00 0.00 5.14
97 98 0.322187 ATCGGTTCAAAGGGTTCGGG 60.322 55.000 0.00 0.00 0.00 5.14
98 99 1.199097 CAATCGGTTCAAAGGGTTCGG 59.801 52.381 0.00 0.00 0.00 4.30
99 100 1.401018 GCAATCGGTTCAAAGGGTTCG 60.401 52.381 0.00 0.00 0.00 3.95
100 101 1.611491 TGCAATCGGTTCAAAGGGTTC 59.389 47.619 0.00 0.00 0.00 3.62
101 102 1.613437 CTGCAATCGGTTCAAAGGGTT 59.387 47.619 0.00 0.00 0.00 4.11
102 103 1.247567 CTGCAATCGGTTCAAAGGGT 58.752 50.000 0.00 0.00 0.00 4.34
103 104 0.527565 CCTGCAATCGGTTCAAAGGG 59.472 55.000 0.00 0.00 0.00 3.95
104 105 1.068333 CACCTGCAATCGGTTCAAAGG 60.068 52.381 0.00 0.08 30.82 3.11
105 106 1.068333 CCACCTGCAATCGGTTCAAAG 60.068 52.381 0.00 0.00 30.82 2.77
106 107 0.958091 CCACCTGCAATCGGTTCAAA 59.042 50.000 0.00 0.00 30.82 2.69
107 108 0.893270 CCCACCTGCAATCGGTTCAA 60.893 55.000 0.00 0.00 30.82 2.69
108 109 1.303236 CCCACCTGCAATCGGTTCA 60.303 57.895 0.00 0.00 30.82 3.18
109 110 1.002624 TCCCACCTGCAATCGGTTC 60.003 57.895 0.00 0.00 30.82 3.62
110 111 1.303317 GTCCCACCTGCAATCGGTT 60.303 57.895 0.00 0.00 30.82 4.44
111 112 2.351276 GTCCCACCTGCAATCGGT 59.649 61.111 0.00 0.00 34.38 4.69
112 113 2.438434 GGTCCCACCTGCAATCGG 60.438 66.667 0.00 0.00 34.73 4.18
113 114 1.622607 TAGGGTCCCACCTGCAATCG 61.623 60.000 11.55 0.00 42.02 3.34
114 115 0.107165 GTAGGGTCCCACCTGCAATC 60.107 60.000 11.55 0.00 42.14 2.67
115 116 1.571773 GGTAGGGTCCCACCTGCAAT 61.572 60.000 11.55 0.00 44.08 3.56
116 117 2.228480 GGTAGGGTCCCACCTGCAA 61.228 63.158 11.55 0.00 44.08 4.08
117 118 2.609610 GGTAGGGTCCCACCTGCA 60.610 66.667 11.55 0.00 44.08 4.41
118 119 2.285442 AGGTAGGGTCCCACCTGC 60.285 66.667 23.81 3.63 43.64 4.85
120 121 2.285442 GCAGGTAGGGTCCCACCT 60.285 66.667 20.60 20.60 46.29 4.00
121 122 3.408853 GGCAGGTAGGGTCCCACC 61.409 72.222 11.55 15.25 37.60 4.61
122 123 3.782443 CGGCAGGTAGGGTCCCAC 61.782 72.222 11.55 6.32 0.00 4.61
124 125 4.791069 TCCGGCAGGTAGGGTCCC 62.791 72.222 0.00 0.00 39.05 4.46
125 126 3.468140 GTCCGGCAGGTAGGGTCC 61.468 72.222 1.81 0.00 39.05 4.46
126 127 2.363925 AGTCCGGCAGGTAGGGTC 60.364 66.667 1.81 0.00 39.05 4.46
127 128 2.683933 CAGTCCGGCAGGTAGGGT 60.684 66.667 1.81 0.00 39.05 4.34
128 129 2.683933 ACAGTCCGGCAGGTAGGG 60.684 66.667 1.81 0.00 39.05 3.53
129 130 2.722201 GGACAGTCCGGCAGGTAGG 61.722 68.421 3.05 0.00 39.05 3.18
130 131 0.395311 TAGGACAGTCCGGCAGGTAG 60.395 60.000 14.32 0.00 42.75 3.18
131 132 0.395311 CTAGGACAGTCCGGCAGGTA 60.395 60.000 14.32 0.00 42.75 3.08
132 133 1.682684 CTAGGACAGTCCGGCAGGT 60.683 63.158 14.32 0.00 42.75 4.00
133 134 1.682684 ACTAGGACAGTCCGGCAGG 60.683 63.158 14.32 0.00 42.75 4.85
134 135 1.513158 CACTAGGACAGTCCGGCAG 59.487 63.158 14.32 14.27 42.75 4.85
135 136 2.646175 GCACTAGGACAGTCCGGCA 61.646 63.158 14.32 2.84 42.75 5.69
136 137 2.184579 GCACTAGGACAGTCCGGC 59.815 66.667 14.32 12.52 42.75 6.13
137 138 1.682684 AGGCACTAGGACAGTCCGG 60.683 63.158 14.32 13.14 42.75 5.14
138 139 1.251527 ACAGGCACTAGGACAGTCCG 61.252 60.000 14.32 3.38 38.19 4.79
139 140 0.533032 GACAGGCACTAGGACAGTCC 59.467 60.000 12.25 12.25 36.02 3.85
140 141 0.533032 GGACAGGCACTAGGACAGTC 59.467 60.000 0.00 0.00 36.02 3.51
141 142 0.178932 TGGACAGGCACTAGGACAGT 60.179 55.000 0.00 0.00 36.02 3.55
142 143 0.247736 GTGGACAGGCACTAGGACAG 59.752 60.000 0.00 0.00 36.02 3.51
143 144 1.192146 GGTGGACAGGCACTAGGACA 61.192 60.000 0.00 0.00 36.02 4.02
144 145 1.192146 TGGTGGACAGGCACTAGGAC 61.192 60.000 0.00 0.00 36.02 3.85
145 146 1.157513 TGGTGGACAGGCACTAGGA 59.842 57.895 0.00 0.00 36.02 2.94
146 147 1.194781 AGTGGTGGACAGGCACTAGG 61.195 60.000 0.00 0.00 36.02 3.02
147 148 0.036952 CAGTGGTGGACAGGCACTAG 60.037 60.000 0.00 0.00 36.02 2.57
148 149 0.762842 ACAGTGGTGGACAGGCACTA 60.763 55.000 0.00 0.00 36.02 2.74
149 150 2.072487 ACAGTGGTGGACAGGCACT 61.072 57.895 0.00 0.00 43.88 4.40
150 151 1.893808 CACAGTGGTGGACAGGCAC 60.894 63.158 0.00 0.00 41.45 5.01
151 152 2.510411 CACAGTGGTGGACAGGCA 59.490 61.111 0.00 0.00 41.45 4.75
152 153 2.980233 GCACAGTGGTGGACAGGC 60.980 66.667 1.84 0.00 45.38 4.85
153 154 2.281761 GGCACAGTGGTGGACAGG 60.282 66.667 1.84 0.00 45.38 4.00
154 155 2.281761 GGGCACAGTGGTGGACAG 60.282 66.667 1.84 0.00 45.38 3.51
155 156 4.248842 CGGGCACAGTGGTGGACA 62.249 66.667 1.84 0.00 45.38 4.02
174 175 2.441532 ATGGACCATGCTGCCTGC 60.442 61.111 6.06 0.00 43.25 4.85
175 176 0.395311 AAGATGGACCATGCTGCCTG 60.395 55.000 12.99 0.00 0.00 4.85
176 177 0.395311 CAAGATGGACCATGCTGCCT 60.395 55.000 12.99 0.00 0.00 4.75
177 178 0.682209 ACAAGATGGACCATGCTGCC 60.682 55.000 12.99 0.00 0.00 4.85
178 179 0.454600 CACAAGATGGACCATGCTGC 59.545 55.000 12.99 0.00 0.00 5.25
179 180 1.830279 ACACAAGATGGACCATGCTG 58.170 50.000 12.99 11.02 0.00 4.41
180 181 2.592102 AACACAAGATGGACCATGCT 57.408 45.000 12.99 6.17 0.00 3.79
181 182 6.449635 TTTATAACACAAGATGGACCATGC 57.550 37.500 12.99 3.76 0.00 4.06
182 183 7.339212 TCCTTTTATAACACAAGATGGACCATG 59.661 37.037 12.99 1.19 0.00 3.66
183 184 7.410174 TCCTTTTATAACACAAGATGGACCAT 58.590 34.615 6.71 6.71 0.00 3.55
184 185 6.785076 TCCTTTTATAACACAAGATGGACCA 58.215 36.000 0.00 0.00 0.00 4.02
185 186 7.696992 TTCCTTTTATAACACAAGATGGACC 57.303 36.000 0.00 0.00 0.00 4.46
229 230 9.434420 CCTTTCCTTATTTGCATTTTCATGTTA 57.566 29.630 0.00 0.00 32.28 2.41
230 231 7.391275 CCCTTTCCTTATTTGCATTTTCATGTT 59.609 33.333 0.00 0.00 32.28 2.71
231 232 6.880529 CCCTTTCCTTATTTGCATTTTCATGT 59.119 34.615 0.00 0.00 32.28 3.21
232 233 6.316890 CCCCTTTCCTTATTTGCATTTTCATG 59.683 38.462 0.00 0.00 0.00 3.07
233 234 6.215227 TCCCCTTTCCTTATTTGCATTTTCAT 59.785 34.615 0.00 0.00 0.00 2.57
234 235 5.545723 TCCCCTTTCCTTATTTGCATTTTCA 59.454 36.000 0.00 0.00 0.00 2.69
235 236 6.048732 TCCCCTTTCCTTATTTGCATTTTC 57.951 37.500 0.00 0.00 0.00 2.29
236 237 5.045651 CCTCCCCTTTCCTTATTTGCATTTT 60.046 40.000 0.00 0.00 0.00 1.82
237 238 4.471025 CCTCCCCTTTCCTTATTTGCATTT 59.529 41.667 0.00 0.00 0.00 2.32
238 239 4.033009 CCTCCCCTTTCCTTATTTGCATT 58.967 43.478 0.00 0.00 0.00 3.56
239 240 3.630828 CCCTCCCCTTTCCTTATTTGCAT 60.631 47.826 0.00 0.00 0.00 3.96
240 241 2.292192 CCCTCCCCTTTCCTTATTTGCA 60.292 50.000 0.00 0.00 0.00 4.08
241 242 2.024369 TCCCTCCCCTTTCCTTATTTGC 60.024 50.000 0.00 0.00 0.00 3.68
242 243 3.627492 GGTCCCTCCCCTTTCCTTATTTG 60.627 52.174 0.00 0.00 0.00 2.32
243 244 2.585900 GGTCCCTCCCCTTTCCTTATTT 59.414 50.000 0.00 0.00 0.00 1.40
244 245 2.215093 GGTCCCTCCCCTTTCCTTATT 58.785 52.381 0.00 0.00 0.00 1.40
245 246 1.083912 TGGTCCCTCCCCTTTCCTTAT 59.916 52.381 0.00 0.00 34.77 1.73
246 247 0.499147 TGGTCCCTCCCCTTTCCTTA 59.501 55.000 0.00 0.00 34.77 2.69
247 248 0.846870 CTGGTCCCTCCCCTTTCCTT 60.847 60.000 0.00 0.00 34.77 3.36
248 249 1.229984 CTGGTCCCTCCCCTTTCCT 60.230 63.158 0.00 0.00 34.77 3.36
249 250 0.624795 ATCTGGTCCCTCCCCTTTCC 60.625 60.000 0.00 0.00 34.77 3.13
250 251 0.840617 GATCTGGTCCCTCCCCTTTC 59.159 60.000 0.00 0.00 34.77 2.62
251 252 0.624795 GGATCTGGTCCCTCCCCTTT 60.625 60.000 0.00 0.00 41.50 3.11
252 253 1.004891 GGATCTGGTCCCTCCCCTT 59.995 63.158 0.00 0.00 41.50 3.95
253 254 2.706071 GGATCTGGTCCCTCCCCT 59.294 66.667 0.00 0.00 41.50 4.79
261 262 1.270625 TGTTCGTGTTGGGATCTGGTC 60.271 52.381 0.00 0.00 0.00 4.02
262 263 0.762418 TGTTCGTGTTGGGATCTGGT 59.238 50.000 0.00 0.00 0.00 4.00
263 264 1.806542 CTTGTTCGTGTTGGGATCTGG 59.193 52.381 0.00 0.00 0.00 3.86
264 265 2.224079 CACTTGTTCGTGTTGGGATCTG 59.776 50.000 0.00 0.00 0.00 2.90
265 266 2.494059 CACTTGTTCGTGTTGGGATCT 58.506 47.619 0.00 0.00 0.00 2.75
266 267 1.069227 GCACTTGTTCGTGTTGGGATC 60.069 52.381 0.00 0.00 37.24 3.36
267 268 0.951558 GCACTTGTTCGTGTTGGGAT 59.048 50.000 0.00 0.00 37.24 3.85
268 269 0.107410 AGCACTTGTTCGTGTTGGGA 60.107 50.000 0.00 0.00 37.24 4.37
269 270 0.307760 GAGCACTTGTTCGTGTTGGG 59.692 55.000 0.00 0.00 37.24 4.12
270 271 0.042188 CGAGCACTTGTTCGTGTTGG 60.042 55.000 7.26 0.00 42.51 3.77
271 272 3.420968 CGAGCACTTGTTCGTGTTG 57.579 52.632 7.26 0.00 42.51 3.33
277 278 1.264020 TGCAATCACGAGCACTTGTTC 59.736 47.619 0.00 0.00 35.51 3.18
278 279 1.308047 TGCAATCACGAGCACTTGTT 58.692 45.000 0.00 0.00 35.51 2.83
279 280 1.466167 GATGCAATCACGAGCACTTGT 59.534 47.619 0.00 0.00 44.70 3.16
280 281 2.169663 GATGCAATCACGAGCACTTG 57.830 50.000 0.00 0.00 44.70 3.16
291 292 3.660621 GCTAGGGCGGATGCAATC 58.339 61.111 0.00 0.00 45.35 2.67
301 302 2.159085 ACTTATGACACTTCGCTAGGGC 60.159 50.000 1.02 0.00 0.00 5.19
302 303 3.802948 ACTTATGACACTTCGCTAGGG 57.197 47.619 0.00 0.00 0.00 3.53
303 304 4.201724 GCAAACTTATGACACTTCGCTAGG 60.202 45.833 0.00 0.00 0.00 3.02
304 305 4.627467 AGCAAACTTATGACACTTCGCTAG 59.373 41.667 0.00 0.00 0.00 3.42
305 306 4.566004 AGCAAACTTATGACACTTCGCTA 58.434 39.130 0.00 0.00 0.00 4.26
306 307 3.403038 AGCAAACTTATGACACTTCGCT 58.597 40.909 0.00 0.00 0.00 4.93
307 308 3.813529 AGCAAACTTATGACACTTCGC 57.186 42.857 0.00 0.00 0.00 4.70
308 309 5.597813 AGAAGCAAACTTATGACACTTCG 57.402 39.130 0.00 0.00 37.66 3.79
440 443 3.886505 GGGGTGTTTTGTGTCTTGACATA 59.113 43.478 6.74 1.35 0.00 2.29
694 1055 4.410400 CGGAAGGTGGAGGGTGCC 62.410 72.222 0.00 0.00 0.00 5.01
771 1132 4.200283 GCAGAGAGGAGGGACGCG 62.200 72.222 3.53 3.53 0.00 6.01
882 1243 4.162690 GGATCAAGGAGGCGCGGT 62.163 66.667 8.83 0.00 0.00 5.68
894 1255 1.369692 ACGCAACCTCGTTGGATCA 59.630 52.632 6.64 0.00 42.99 2.92
1084 1452 3.065371 GTCAGGTTATTTCATGGAAGGCG 59.935 47.826 0.00 0.00 0.00 5.52
1206 1579 7.383687 ACGGACAAGAGAACAATGTCTATTAA 58.616 34.615 5.27 0.00 42.36 1.40
1207 1580 6.931838 ACGGACAAGAGAACAATGTCTATTA 58.068 36.000 5.27 0.00 42.36 0.98
1333 1706 7.923344 CCTGACGATATTTTCTTCTCTGTGTAT 59.077 37.037 0.00 0.00 0.00 2.29
1916 2296 9.566432 GATGGATTGAACTGATTTTCTAGGTAT 57.434 33.333 0.00 0.00 0.00 2.73
2111 2494 4.592192 CATCTCGCCGCCGGACAT 62.592 66.667 7.68 0.00 34.56 3.06
2145 2528 2.093658 GGAAGTGATTACGGGAAGCAGA 60.094 50.000 0.00 0.00 33.09 4.26
2157 2540 2.169832 CACACGAGGTGGAAGTGATT 57.830 50.000 1.63 0.00 44.04 2.57
2272 2655 2.664851 CGCGCTCCACTTGGACAA 60.665 61.111 5.56 0.00 39.78 3.18
2436 2840 1.757682 TGCGCGGGGAATTTTAGAAT 58.242 45.000 8.83 0.00 0.00 2.40
2528 2932 5.029807 TCATTCCATCGGCAACTATGTAA 57.970 39.130 0.00 0.00 38.05 2.41
2582 3015 4.168101 ACCAATCCAGAGAACCAGAACTA 58.832 43.478 0.00 0.00 0.00 2.24
3159 3608 2.729882 CACAGCTCTTTCAATTTGCAGC 59.270 45.455 0.00 0.00 0.00 5.25
3379 3836 2.029623 GGTGTAGATTAGAGTGGCCGA 58.970 52.381 0.00 0.00 0.00 5.54
3731 4224 5.121768 CAGAGTTGGAAGTAATAAACACCCG 59.878 44.000 0.00 0.00 0.00 5.28
3882 4378 3.693085 CAGTTCATGATGCAAAGGCTAGT 59.307 43.478 0.00 0.00 41.91 2.57
3884 4380 3.018856 CCAGTTCATGATGCAAAGGCTA 58.981 45.455 0.00 0.00 41.91 3.93
4097 4594 8.032952 AGTATGACACACACATCAGTATTTTG 57.967 34.615 0.00 0.00 0.00 2.44
4195 4694 1.255667 ACCGGGCCTACACTGTACTG 61.256 60.000 6.32 0.00 0.00 2.74
4216 4715 2.881528 GCCATTTGTGCAGGGCCAA 61.882 57.895 6.18 0.00 40.55 4.52
4294 4798 8.986477 AACTGAACAAAATATAAAGATGCACC 57.014 30.769 0.00 0.00 0.00 5.01
4400 4904 1.610522 GCAGTTGGCTTGATCAGTGTT 59.389 47.619 0.00 0.00 40.25 3.32
4663 5170 6.419413 TCTTTGTTTAGGCATTTAAGCAAACG 59.581 34.615 10.54 8.53 38.19 3.60
4710 5217 6.998673 AGGTTTGCACTGAACTAAAACTAGAT 59.001 34.615 0.00 0.00 28.96 1.98
4790 5297 3.004106 GTGCTTGGCATGTAAGATGATCC 59.996 47.826 13.75 0.00 41.91 3.36
4805 5312 1.358759 GTGTCGGTTTGGTGCTTGG 59.641 57.895 0.00 0.00 0.00 3.61
5229 5736 7.603180 TGTTAATAGATCATACAGCCTCAGT 57.397 36.000 0.00 0.00 0.00 3.41
5305 5812 7.361971 CGATGGTGCTAATGCCAAATATAATCA 60.362 37.037 0.00 0.00 38.38 2.57
5917 6434 4.602340 TGTTGAGGGAGAAGACTACAAC 57.398 45.455 0.00 0.00 37.31 3.32
6025 6542 6.293900 CCTGTTGTAACATTGAGCATGTAACA 60.294 38.462 0.00 0.00 46.23 2.41
6132 6649 2.609610 CGGAAGGAGGGGTTGGGA 60.610 66.667 0.00 0.00 0.00 4.37
6451 6968 7.609760 TGCATTACATCGAACTAAACTGAAT 57.390 32.000 0.00 0.00 0.00 2.57
6471 6988 6.985117 TCTAGCAGTTTCAGAATTTTTGCAT 58.015 32.000 0.00 0.00 32.79 3.96
6490 7007 4.508124 CCAAAATACTCACACGGATCTAGC 59.492 45.833 0.00 0.00 0.00 3.42
6530 7047 9.893305 AGTACAACAATAAAACAATTAGTCAGC 57.107 29.630 0.00 0.00 0.00 4.26
6541 7060 6.614160 ACGGCCATTAGTACAACAATAAAAC 58.386 36.000 2.24 0.00 0.00 2.43
6646 7165 3.500680 CACACAAACCGCCATTAGTACTT 59.499 43.478 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.