Multiple sequence alignment - TraesCS3B01G226800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G226800 chr3B 100.000 4420 0 0 1 4420 317627595 317623176 0.000000e+00 8163.0
1 TraesCS3B01G226800 chr3B 84.472 161 22 3 3500 3659 691275042 691275200 5.920000e-34 156.0
2 TraesCS3B01G226800 chr3A 96.305 3139 74 17 816 3929 283112602 283109481 0.000000e+00 5116.0
3 TraesCS3B01G226800 chr3A 93.762 513 13 3 3909 4420 283102288 283101794 0.000000e+00 752.0
4 TraesCS3B01G226800 chr3A 80.435 184 33 3 3501 3681 36337403 36337586 2.140000e-28 137.0
5 TraesCS3B01G226800 chr3A 80.447 179 29 4 3504 3681 412834491 412834318 9.980000e-27 132.0
6 TraesCS3B01G226800 chr3D 96.964 2964 76 11 1461 4420 223468849 223471802 0.000000e+00 4963.0
7 TraesCS3B01G226800 chr3D 95.194 645 14 2 816 1443 223466294 223466938 0.000000e+00 1003.0
8 TraesCS3B01G226800 chr3D 86.335 161 9 3 650 798 223203749 223203908 3.540000e-36 163.0
9 TraesCS3B01G226800 chr1B 82.841 880 127 17 2485 3342 156853514 156852637 0.000000e+00 767.0
10 TraesCS3B01G226800 chr1D 82.633 881 127 18 2485 3342 95866029 95866906 0.000000e+00 756.0
11 TraesCS3B01G226800 chr1A 82.293 881 130 21 2485 3342 91160542 91161419 0.000000e+00 739.0
12 TraesCS3B01G226800 chr1A 86.508 126 11 4 238 359 561076804 561076927 2.770000e-27 134.0
13 TraesCS3B01G226800 chr1A 80.405 148 18 6 656 793 581543884 581544030 7.820000e-18 102.0
14 TraesCS3B01G226800 chr4D 84.103 195 16 7 163 344 278378396 278378204 1.630000e-39 174.0
15 TraesCS3B01G226800 chr4D 86.207 116 14 2 230 345 198595402 198595289 1.670000e-24 124.0
16 TraesCS3B01G226800 chr4D 85.246 122 17 1 224 345 278378175 278378055 1.670000e-24 124.0
17 TraesCS3B01G226800 chr4D 78.788 198 31 10 1602 1796 277403287 277403476 6.000000e-24 122.0
18 TraesCS3B01G226800 chr4D 91.489 47 2 2 1602 1647 177491805 177491850 3.690000e-06 63.9
19 TraesCS3B01G226800 chr7A 81.407 199 33 4 3496 3690 393692050 393691852 4.580000e-35 159.0
20 TraesCS3B01G226800 chr5A 79.695 197 35 5 3501 3694 160017789 160017595 2.140000e-28 137.0
21 TraesCS3B01G226800 chr5A 82.963 135 12 6 667 793 536827543 536827412 1.300000e-20 111.0
22 TraesCS3B01G226800 chr5A 82.022 89 11 4 1607 1694 382546214 382546298 2.210000e-08 71.3
23 TraesCS3B01G226800 chr2A 79.688 192 34 5 3501 3690 765764709 765764521 2.770000e-27 134.0
24 TraesCS3B01G226800 chr2A 79.679 187 34 4 3501 3683 121169292 121169478 9.980000e-27 132.0
25 TraesCS3B01G226800 chr2A 81.884 138 13 6 667 793 537476708 537476572 6.050000e-19 106.0
26 TraesCS3B01G226800 chr7B 84.211 133 14 3 667 793 277651824 277651693 6.000000e-24 122.0
27 TraesCS3B01G226800 chr7B 93.182 44 3 0 266 309 735289913 735289956 1.030000e-06 65.8
28 TraesCS3B01G226800 chr7D 84.127 126 13 2 667 785 75800848 75800723 1.000000e-21 115.0
29 TraesCS3B01G226800 chr4B 78.238 193 28 11 1602 1790 242723807 242723989 1.300000e-20 111.0
30 TraesCS3B01G226800 chr4B 77.419 155 20 10 1607 1760 324978736 324978876 1.320000e-10 78.7
31 TraesCS3B01G226800 chr6D 82.014 139 13 7 666 793 303526823 303526960 1.680000e-19 108.0
32 TraesCS3B01G226800 chr6A 80.795 151 16 6 661 798 249162347 249162497 6.050000e-19 106.0
33 TraesCS3B01G226800 chr4A 81.208 149 13 9 657 793 186476387 186476532 6.050000e-19 106.0
34 TraesCS3B01G226800 chr4A 80.488 82 12 3 1607 1688 235655360 235655437 4.770000e-05 60.2
35 TraesCS3B01G226800 chr5B 82.192 73 9 3 1606 1677 330745875 330745944 4.770000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G226800 chr3B 317623176 317627595 4419 True 8163 8163 100.000 1 4420 1 chr3B.!!$R1 4419
1 TraesCS3B01G226800 chr3A 283109481 283112602 3121 True 5116 5116 96.305 816 3929 1 chr3A.!!$R2 3113
2 TraesCS3B01G226800 chr3D 223466294 223471802 5508 False 2983 4963 96.079 816 4420 2 chr3D.!!$F2 3604
3 TraesCS3B01G226800 chr1B 156852637 156853514 877 True 767 767 82.841 2485 3342 1 chr1B.!!$R1 857
4 TraesCS3B01G226800 chr1D 95866029 95866906 877 False 756 756 82.633 2485 3342 1 chr1D.!!$F1 857
5 TraesCS3B01G226800 chr1A 91160542 91161419 877 False 739 739 82.293 2485 3342 1 chr1A.!!$F1 857

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
38 39 0.037790 GGCATCGGCTCCTCTCATAC 60.038 60.0 0.00 0.00 40.87 2.39 F
39 40 0.037790 GCATCGGCTCCTCTCATACC 60.038 60.0 0.00 0.00 36.96 2.73 F
203 204 0.107800 GCAGCCAGATCTCTTCAGCA 60.108 55.0 0.00 0.00 0.00 4.41 F
460 461 0.169230 GAGATCGTAGATCGCGGCAT 59.831 55.0 6.13 0.00 45.12 4.40 F
461 462 0.169230 AGATCGTAGATCGCGGCATC 59.831 55.0 6.13 2.36 45.12 3.91 F
500 501 0.178950 CTGGGATGGGATCGAGAGGA 60.179 60.0 0.00 0.00 0.00 3.71 F
746 747 0.317160 ACGCGGAGATTTGTGTGAGA 59.683 50.0 12.47 0.00 0.00 3.27 F
804 805 0.527600 CGCTTAGACATGCTGGCGTA 60.528 55.0 19.69 0.00 41.63 4.42 F
1531 3446 0.976641 TGGCCAGAGTTGGTAGTCTG 59.023 55.0 0.00 0.00 46.88 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1490 3405 0.110056 GACCACGCTGCAAGAACATG 60.110 55.000 0.00 0.00 34.07 3.21 R
1491 3406 0.534877 TGACCACGCTGCAAGAACAT 60.535 50.000 0.00 0.00 34.07 2.71 R
1531 3446 3.887621 TCAAGTGTACCCATAGAGCAC 57.112 47.619 0.00 0.00 0.00 4.40 R
1955 3873 5.429130 TGGTACACATAACAAACACAGTCA 58.571 37.500 0.00 0.00 0.00 3.41 R
1976 3894 7.894376 ATGCAAATTCTTGAAATAGTTGTGG 57.106 32.000 0.00 0.00 34.14 4.17 R
2482 4401 6.101734 ACAAACTGACCATGGATATCACCTAT 59.898 38.462 21.47 0.00 0.00 2.57 R
2541 4460 4.473477 AAGATAAGTCGAAGTTGGAGGG 57.527 45.455 0.00 0.00 0.00 4.30 R
3100 5019 3.603532 TGAGGACATTCATGCTTCAGTC 58.396 45.455 0.00 0.00 0.00 3.51 R
3711 5649 0.316689 CAAAAGAAAACTCGCGCGGT 60.317 50.000 31.69 23.24 0.00 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.377202 TGAGGTCCGCAATGAAGGC 60.377 57.895 0.00 0.00 0.00 4.35
25 26 2.025156 GCAATGAAGGCGGCATCG 59.975 61.111 13.08 0.00 39.81 3.84
26 27 2.717485 CAATGAAGGCGGCATCGG 59.283 61.111 13.08 0.00 36.79 4.18
34 35 4.959596 GCGGCATCGGCTCCTCTC 62.960 72.222 0.00 0.00 40.87 3.20
35 36 3.531207 CGGCATCGGCTCCTCTCA 61.531 66.667 0.00 0.00 40.87 3.27
36 37 2.865598 CGGCATCGGCTCCTCTCAT 61.866 63.158 0.00 0.00 40.87 2.90
37 38 1.527433 CGGCATCGGCTCCTCTCATA 61.527 60.000 0.00 0.00 40.87 2.15
38 39 0.037790 GGCATCGGCTCCTCTCATAC 60.038 60.000 0.00 0.00 40.87 2.39
39 40 0.037790 GCATCGGCTCCTCTCATACC 60.038 60.000 0.00 0.00 36.96 2.73
40 41 1.626686 CATCGGCTCCTCTCATACCT 58.373 55.000 0.00 0.00 0.00 3.08
41 42 1.543802 CATCGGCTCCTCTCATACCTC 59.456 57.143 0.00 0.00 0.00 3.85
42 43 0.178987 TCGGCTCCTCTCATACCTCC 60.179 60.000 0.00 0.00 0.00 4.30
43 44 1.519751 CGGCTCCTCTCATACCTCCG 61.520 65.000 0.00 0.00 0.00 4.63
44 45 1.663173 GCTCCTCTCATACCTCCGC 59.337 63.158 0.00 0.00 0.00 5.54
45 46 1.953017 CTCCTCTCATACCTCCGCG 59.047 63.158 0.00 0.00 0.00 6.46
46 47 1.519751 CTCCTCTCATACCTCCGCGG 61.520 65.000 22.12 22.12 39.35 6.46
47 48 2.336809 CTCTCATACCTCCGCGGC 59.663 66.667 23.51 0.00 35.61 6.53
48 49 3.544167 CTCTCATACCTCCGCGGCG 62.544 68.421 23.51 15.99 35.61 6.46
71 72 4.478195 CGACACCGTGATGAGGTC 57.522 61.111 5.28 0.00 40.59 3.85
72 73 1.153823 CGACACCGTGATGAGGTCC 60.154 63.158 5.28 0.00 40.59 4.46
73 74 1.153823 GACACCGTGATGAGGTCCG 60.154 63.158 5.28 0.00 40.59 4.79
74 75 2.184322 CACCGTGATGAGGTCCGG 59.816 66.667 0.00 0.00 40.59 5.14
75 76 3.771160 ACCGTGATGAGGTCCGGC 61.771 66.667 0.00 0.00 41.50 6.13
76 77 4.873129 CCGTGATGAGGTCCGGCG 62.873 72.222 0.00 0.00 35.11 6.46
77 78 4.873129 CGTGATGAGGTCCGGCGG 62.873 72.222 22.51 22.51 0.00 6.13
78 79 3.458163 GTGATGAGGTCCGGCGGA 61.458 66.667 27.46 27.46 0.00 5.54
79 80 3.147595 TGATGAGGTCCGGCGGAG 61.148 66.667 31.98 1.92 29.39 4.63
80 81 3.917760 GATGAGGTCCGGCGGAGG 61.918 72.222 31.98 0.99 29.39 4.30
92 93 2.203422 CGGAGGCTCCTCTCGGAT 60.203 66.667 29.81 0.00 42.38 4.18
93 94 2.560119 CGGAGGCTCCTCTCGGATG 61.560 68.421 29.81 9.11 42.38 3.51
94 95 1.456705 GGAGGCTCCTCTCGGATGT 60.457 63.158 26.44 0.00 42.38 3.06
95 96 1.460273 GGAGGCTCCTCTCGGATGTC 61.460 65.000 26.44 0.00 42.38 3.06
96 97 1.791103 GAGGCTCCTCTCGGATGTCG 61.791 65.000 2.15 0.00 39.01 4.35
97 98 2.725008 GCTCCTCTCGGATGTCGG 59.275 66.667 0.00 0.00 39.01 4.79
98 99 2.725008 CTCCTCTCGGATGTCGGC 59.275 66.667 0.00 0.00 39.01 5.54
99 100 3.187699 CTCCTCTCGGATGTCGGCG 62.188 68.421 0.00 0.00 39.01 6.46
100 101 4.271816 CCTCTCGGATGTCGGCGG 62.272 72.222 7.21 0.00 39.77 6.13
101 102 4.933064 CTCTCGGATGTCGGCGGC 62.933 72.222 3.62 3.62 39.77 6.53
110 111 3.255379 GTCGGCGGCGACAATCTC 61.255 66.667 46.36 26.85 38.62 2.75
111 112 4.847516 TCGGCGGCGACAATCTCG 62.848 66.667 31.46 0.00 45.97 4.04
113 114 2.103538 GGCGGCGACAATCTCGTA 59.896 61.111 12.98 0.00 44.92 3.43
114 115 2.228914 GGCGGCGACAATCTCGTAC 61.229 63.158 12.98 0.00 44.92 3.67
115 116 2.228914 GCGGCGACAATCTCGTACC 61.229 63.158 12.98 0.00 44.92 3.34
116 117 1.432251 CGGCGACAATCTCGTACCT 59.568 57.895 0.00 0.00 44.92 3.08
117 118 0.591741 CGGCGACAATCTCGTACCTC 60.592 60.000 0.00 0.00 44.92 3.85
118 119 0.454600 GGCGACAATCTCGTACCTCA 59.545 55.000 0.00 0.00 44.92 3.86
119 120 1.534175 GGCGACAATCTCGTACCTCAG 60.534 57.143 0.00 0.00 44.92 3.35
120 121 1.132643 GCGACAATCTCGTACCTCAGT 59.867 52.381 0.00 0.00 44.92 3.41
121 122 2.786854 CGACAATCTCGTACCTCAGTG 58.213 52.381 0.00 0.00 37.64 3.66
122 123 2.478031 CGACAATCTCGTACCTCAGTGG 60.478 54.545 0.00 0.00 37.64 4.00
123 124 1.204941 ACAATCTCGTACCTCAGTGGC 59.795 52.381 0.00 0.00 40.22 5.01
124 125 0.456221 AATCTCGTACCTCAGTGGCG 59.544 55.000 0.00 0.00 40.22 5.69
125 126 1.384989 ATCTCGTACCTCAGTGGCGG 61.385 60.000 0.00 0.00 40.22 6.13
126 127 3.064987 CTCGTACCTCAGTGGCGGG 62.065 68.421 4.71 1.29 40.22 6.13
127 128 4.814294 CGTACCTCAGTGGCGGGC 62.814 72.222 0.00 0.00 40.22 6.13
128 129 4.814294 GTACCTCAGTGGCGGGCG 62.814 72.222 0.00 0.00 40.22 6.13
131 132 4.473520 CCTCAGTGGCGGGCGAAT 62.474 66.667 0.00 0.00 0.00 3.34
132 133 3.197790 CTCAGTGGCGGGCGAATG 61.198 66.667 0.00 0.00 0.00 2.67
133 134 4.776322 TCAGTGGCGGGCGAATGG 62.776 66.667 3.46 0.00 0.00 3.16
135 136 3.395702 AGTGGCGGGCGAATGGTA 61.396 61.111 0.00 0.00 0.00 3.25
136 137 3.199891 GTGGCGGGCGAATGGTAC 61.200 66.667 0.00 0.00 0.00 3.34
153 154 5.538849 TGGTACAGAAACACATGTGTAGA 57.461 39.130 30.75 10.51 44.13 2.59
154 155 5.294356 TGGTACAGAAACACATGTGTAGAC 58.706 41.667 30.75 22.49 44.13 2.59
155 156 5.069914 TGGTACAGAAACACATGTGTAGACT 59.930 40.000 30.75 24.10 44.13 3.24
156 157 5.405571 GGTACAGAAACACATGTGTAGACTG 59.594 44.000 33.23 33.23 44.13 3.51
157 158 5.276461 ACAGAAACACATGTGTAGACTGA 57.724 39.130 37.10 0.00 44.13 3.41
158 159 5.670485 ACAGAAACACATGTGTAGACTGAA 58.330 37.500 37.10 0.00 44.13 3.02
159 160 6.291377 ACAGAAACACATGTGTAGACTGAAT 58.709 36.000 37.10 25.55 44.13 2.57
160 161 6.203530 ACAGAAACACATGTGTAGACTGAATG 59.796 38.462 37.10 26.55 44.13 2.67
161 162 5.702670 AGAAACACATGTGTAGACTGAATGG 59.297 40.000 30.75 0.43 44.13 3.16
162 163 4.890158 ACACATGTGTAGACTGAATGGA 57.110 40.909 29.66 0.00 42.90 3.41
163 164 4.825422 ACACATGTGTAGACTGAATGGAG 58.175 43.478 29.66 0.00 42.90 3.86
164 165 4.284490 ACACATGTGTAGACTGAATGGAGT 59.716 41.667 29.66 0.00 42.90 3.85
165 166 5.221722 ACACATGTGTAGACTGAATGGAGTT 60.222 40.000 29.66 0.00 42.90 3.01
166 167 5.349817 CACATGTGTAGACTGAATGGAGTTC 59.650 44.000 18.03 0.00 37.35 3.01
167 168 4.174411 TGTGTAGACTGAATGGAGTTCG 57.826 45.455 0.00 0.00 39.80 3.95
168 169 3.056821 TGTGTAGACTGAATGGAGTTCGG 60.057 47.826 0.00 0.00 46.63 4.30
169 170 2.094182 TGTAGACTGAATGGAGTTCGGC 60.094 50.000 0.00 0.00 45.39 5.54
170 171 0.108615 AGACTGAATGGAGTTCGGCG 60.109 55.000 0.00 0.00 45.39 6.46
171 172 1.079127 ACTGAATGGAGTTCGGCGG 60.079 57.895 7.21 0.00 45.39 6.13
172 173 1.079127 CTGAATGGAGTTCGGCGGT 60.079 57.895 7.21 0.00 39.80 5.68
173 174 1.361668 CTGAATGGAGTTCGGCGGTG 61.362 60.000 7.21 0.00 39.80 4.94
174 175 1.079405 GAATGGAGTTCGGCGGTGA 60.079 57.895 7.21 0.00 0.00 4.02
175 176 1.079127 AATGGAGTTCGGCGGTGAG 60.079 57.895 7.21 0.00 0.00 3.51
176 177 1.541310 AATGGAGTTCGGCGGTGAGA 61.541 55.000 7.21 0.00 0.00 3.27
177 178 1.330655 ATGGAGTTCGGCGGTGAGAT 61.331 55.000 7.21 0.00 0.00 2.75
178 179 1.218316 GGAGTTCGGCGGTGAGATT 59.782 57.895 7.21 0.00 0.00 2.40
179 180 0.458669 GGAGTTCGGCGGTGAGATTA 59.541 55.000 7.21 0.00 0.00 1.75
180 181 1.068741 GGAGTTCGGCGGTGAGATTAT 59.931 52.381 7.21 0.00 0.00 1.28
181 182 2.483188 GGAGTTCGGCGGTGAGATTATT 60.483 50.000 7.21 0.00 0.00 1.40
182 183 3.195661 GAGTTCGGCGGTGAGATTATTT 58.804 45.455 7.21 0.00 0.00 1.40
183 184 2.936498 AGTTCGGCGGTGAGATTATTTG 59.064 45.455 7.21 0.00 0.00 2.32
184 185 1.948104 TCGGCGGTGAGATTATTTGG 58.052 50.000 7.21 0.00 0.00 3.28
185 186 0.307760 CGGCGGTGAGATTATTTGGC 59.692 55.000 0.00 0.00 0.00 4.52
186 187 1.388547 GGCGGTGAGATTATTTGGCA 58.611 50.000 0.00 0.00 0.00 4.92
187 188 1.334869 GGCGGTGAGATTATTTGGCAG 59.665 52.381 0.00 0.00 0.00 4.85
188 189 1.268743 GCGGTGAGATTATTTGGCAGC 60.269 52.381 0.00 0.00 0.00 5.25
189 190 1.334869 CGGTGAGATTATTTGGCAGCC 59.665 52.381 3.66 3.66 0.00 4.85
190 191 2.378038 GGTGAGATTATTTGGCAGCCA 58.622 47.619 11.22 11.22 0.00 4.75
191 192 2.360165 GGTGAGATTATTTGGCAGCCAG 59.640 50.000 15.50 0.00 33.81 4.85
192 193 3.282021 GTGAGATTATTTGGCAGCCAGA 58.718 45.455 15.50 11.38 33.81 3.86
193 194 3.887716 GTGAGATTATTTGGCAGCCAGAT 59.112 43.478 20.81 20.81 33.81 2.90
194 195 4.023365 GTGAGATTATTTGGCAGCCAGATC 60.023 45.833 20.64 17.77 33.81 2.75
195 196 4.141321 TGAGATTATTTGGCAGCCAGATCT 60.141 41.667 20.64 21.49 33.81 2.75
196 197 4.396522 AGATTATTTGGCAGCCAGATCTC 58.603 43.478 20.64 17.29 33.81 2.75
197 198 3.939740 TTATTTGGCAGCCAGATCTCT 57.060 42.857 20.64 0.70 33.81 3.10
198 199 2.822707 ATTTGGCAGCCAGATCTCTT 57.177 45.000 15.50 0.00 33.81 2.85
199 200 2.119801 TTTGGCAGCCAGATCTCTTC 57.880 50.000 15.50 0.00 33.81 2.87
200 201 0.986527 TTGGCAGCCAGATCTCTTCA 59.013 50.000 15.50 0.00 33.81 3.02
201 202 0.540454 TGGCAGCCAGATCTCTTCAG 59.460 55.000 11.22 0.00 0.00 3.02
202 203 0.814812 GGCAGCCAGATCTCTTCAGC 60.815 60.000 6.55 0.00 0.00 4.26
203 204 0.107800 GCAGCCAGATCTCTTCAGCA 60.108 55.000 0.00 0.00 0.00 4.41
204 205 1.475392 GCAGCCAGATCTCTTCAGCAT 60.475 52.381 0.00 0.00 0.00 3.79
205 206 2.224233 GCAGCCAGATCTCTTCAGCATA 60.224 50.000 0.00 0.00 0.00 3.14
206 207 3.391965 CAGCCAGATCTCTTCAGCATAC 58.608 50.000 0.00 0.00 0.00 2.39
207 208 3.069872 CAGCCAGATCTCTTCAGCATACT 59.930 47.826 0.00 0.00 0.00 2.12
208 209 3.710677 AGCCAGATCTCTTCAGCATACTT 59.289 43.478 0.00 0.00 0.00 2.24
209 210 3.808726 GCCAGATCTCTTCAGCATACTTG 59.191 47.826 0.00 0.00 0.00 3.16
210 211 4.378774 CCAGATCTCTTCAGCATACTTGG 58.621 47.826 0.00 0.00 0.00 3.61
211 212 4.378774 CAGATCTCTTCAGCATACTTGGG 58.621 47.826 0.00 0.00 0.00 4.12
212 213 4.100653 CAGATCTCTTCAGCATACTTGGGA 59.899 45.833 0.00 0.00 0.00 4.37
213 214 4.906664 AGATCTCTTCAGCATACTTGGGAT 59.093 41.667 0.00 0.00 0.00 3.85
214 215 5.369110 AGATCTCTTCAGCATACTTGGGATT 59.631 40.000 0.00 0.00 0.00 3.01
215 216 4.774124 TCTCTTCAGCATACTTGGGATTG 58.226 43.478 0.00 0.00 0.00 2.67
216 217 4.471025 TCTCTTCAGCATACTTGGGATTGA 59.529 41.667 0.00 0.00 0.00 2.57
217 218 5.045651 TCTCTTCAGCATACTTGGGATTGAA 60.046 40.000 0.00 0.00 0.00 2.69
218 219 5.569355 TCTTCAGCATACTTGGGATTGAAA 58.431 37.500 0.00 0.00 0.00 2.69
219 220 5.415701 TCTTCAGCATACTTGGGATTGAAAC 59.584 40.000 0.00 0.00 0.00 2.78
220 221 4.016444 TCAGCATACTTGGGATTGAAACC 58.984 43.478 0.00 0.00 0.00 3.27
221 222 3.016736 AGCATACTTGGGATTGAAACCG 58.983 45.455 0.00 0.00 0.00 4.44
222 223 2.479560 GCATACTTGGGATTGAAACCGC 60.480 50.000 0.00 0.00 0.00 5.68
223 224 1.828979 TACTTGGGATTGAAACCGCC 58.171 50.000 0.00 0.00 0.00 6.13
224 225 1.241315 ACTTGGGATTGAAACCGCCG 61.241 55.000 0.00 0.00 0.00 6.46
225 226 2.542211 CTTGGGATTGAAACCGCCGC 62.542 60.000 0.00 0.00 0.00 6.53
226 227 3.822192 GGGATTGAAACCGCCGCC 61.822 66.667 0.00 0.00 0.00 6.13
227 228 4.174129 GGATTGAAACCGCCGCCG 62.174 66.667 0.00 0.00 0.00 6.46
228 229 4.829518 GATTGAAACCGCCGCCGC 62.830 66.667 0.00 0.00 0.00 6.53
246 247 4.840005 GGCGGCTTCTTCCCTCGG 62.840 72.222 0.00 0.00 0.00 4.63
247 248 3.771160 GCGGCTTCTTCCCTCGGA 61.771 66.667 0.00 0.00 0.00 4.55
248 249 2.184579 CGGCTTCTTCCCTCGGAC 59.815 66.667 0.00 0.00 0.00 4.79
249 250 2.184579 GGCTTCTTCCCTCGGACG 59.815 66.667 0.00 0.00 0.00 4.79
250 251 2.184579 GCTTCTTCCCTCGGACGG 59.815 66.667 0.00 0.00 0.00 4.79
251 252 2.893398 CTTCTTCCCTCGGACGGG 59.107 66.667 6.27 6.27 46.13 5.28
252 253 3.372554 CTTCTTCCCTCGGACGGGC 62.373 68.421 7.44 0.00 44.30 6.13
271 272 4.047059 GCAACGACGTCTCCCGGA 62.047 66.667 14.70 0.00 42.24 5.14
272 273 2.178521 CAACGACGTCTCCCGGAG 59.821 66.667 14.70 8.30 42.24 4.63
273 274 2.282040 AACGACGTCTCCCGGAGT 60.282 61.111 14.70 0.00 42.24 3.85
274 275 1.900498 AACGACGTCTCCCGGAGTT 60.900 57.895 14.70 5.48 42.24 3.01
275 276 1.860484 AACGACGTCTCCCGGAGTTC 61.860 60.000 14.70 8.49 42.24 3.01
276 277 2.484203 GACGTCTCCCGGAGTTCG 59.516 66.667 22.91 22.91 42.24 3.95
312 313 4.467084 GTCGGCGGCAGGGATTCA 62.467 66.667 6.63 0.00 0.00 2.57
313 314 3.711814 TCGGCGGCAGGGATTCAA 61.712 61.111 10.53 0.00 0.00 2.69
314 315 2.749839 CGGCGGCAGGGATTCAAA 60.750 61.111 10.53 0.00 0.00 2.69
315 316 2.885113 GGCGGCAGGGATTCAAAC 59.115 61.111 3.07 0.00 0.00 2.93
316 317 2.710902 GGCGGCAGGGATTCAAACC 61.711 63.158 3.07 0.00 0.00 3.27
317 318 3.051392 GCGGCAGGGATTCAAACCG 62.051 63.158 0.00 0.00 43.37 4.44
318 319 2.885113 GGCAGGGATTCAAACCGC 59.115 61.111 0.00 0.00 0.00 5.68
319 320 2.710902 GGCAGGGATTCAAACCGCC 61.711 63.158 0.00 0.00 38.53 6.13
320 321 2.710902 GCAGGGATTCAAACCGCCC 61.711 63.158 0.00 0.00 41.00 6.13
321 322 3.508048 AGGGATTCAAACCGCCCT 58.492 55.556 0.00 0.00 45.97 5.19
322 323 3.603365 GGGATTCAAACCGCCCTG 58.397 61.111 0.00 0.00 37.59 4.45
323 324 2.710902 GGGATTCAAACCGCCCTGC 61.711 63.158 0.00 0.00 37.59 4.85
324 325 2.710902 GGATTCAAACCGCCCTGCC 61.711 63.158 0.00 0.00 0.00 4.85
325 326 2.679996 ATTCAAACCGCCCTGCCC 60.680 61.111 0.00 0.00 0.00 5.36
326 327 3.224007 ATTCAAACCGCCCTGCCCT 62.224 57.895 0.00 0.00 0.00 5.19
327 328 4.659172 TCAAACCGCCCTGCCCTG 62.659 66.667 0.00 0.00 0.00 4.45
337 338 4.803426 CTGCCCTGGAGACGCGAC 62.803 72.222 15.93 6.86 0.00 5.19
340 341 4.477975 CCCTGGAGACGCGACGAC 62.478 72.222 15.93 5.79 0.00 4.34
341 342 4.813526 CCTGGAGACGCGACGACG 62.814 72.222 15.93 2.12 42.93 5.12
342 343 4.813526 CTGGAGACGCGACGACGG 62.814 72.222 15.93 6.55 40.15 4.79
354 355 4.796231 CGACGGCGTCTCCCCTTG 62.796 72.222 33.90 15.51 0.00 3.61
355 356 4.452733 GACGGCGTCTCCCCTTGG 62.453 72.222 31.15 0.00 0.00 3.61
357 358 4.452733 CGGCGTCTCCCCTTGGAC 62.453 72.222 0.00 0.00 35.03 4.02
361 362 4.452733 GTCTCCCCTTGGACGGCG 62.453 72.222 4.80 4.80 35.03 6.46
386 387 2.289890 GGCAACGAACGACTTTGTAC 57.710 50.000 0.14 0.00 31.64 2.90
387 388 1.396316 GGCAACGAACGACTTTGTACG 60.396 52.381 0.14 0.00 31.64 3.67
388 389 1.256117 GCAACGAACGACTTTGTACGT 59.744 47.619 0.14 0.00 44.57 3.57
389 390 2.870832 CAACGAACGACTTTGTACGTG 58.129 47.619 0.00 0.00 42.43 4.49
390 391 1.480205 ACGAACGACTTTGTACGTGG 58.520 50.000 0.00 0.00 42.43 4.94
391 392 0.780002 CGAACGACTTTGTACGTGGG 59.220 55.000 0.00 0.00 42.43 4.61
392 393 0.509929 GAACGACTTTGTACGTGGGC 59.490 55.000 0.00 0.00 42.43 5.36
393 394 0.881600 AACGACTTTGTACGTGGGCC 60.882 55.000 0.00 0.00 42.43 5.80
394 395 2.377310 CGACTTTGTACGTGGGCCG 61.377 63.158 0.00 0.00 44.03 6.13
395 396 2.667199 ACTTTGTACGTGGGCCGC 60.667 61.111 7.12 7.12 41.42 6.53
396 397 3.784412 CTTTGTACGTGGGCCGCG 61.784 66.667 35.66 35.66 43.38 6.46
411 412 4.520846 GCGGCAATGAAGCGTCGG 62.521 66.667 0.00 0.00 34.64 4.79
412 413 4.520846 CGGCAATGAAGCGTCGGC 62.521 66.667 0.00 0.00 40.37 5.54
413 414 4.520846 GGCAATGAAGCGTCGGCG 62.521 66.667 4.29 4.29 46.35 6.46
414 415 4.520846 GCAATGAAGCGTCGGCGG 62.521 66.667 13.05 0.00 46.35 6.13
415 416 4.520846 CAATGAAGCGTCGGCGGC 62.521 66.667 13.05 3.25 46.35 6.53
428 429 4.388499 GCGGCAAGGGTCGGAAGA 62.388 66.667 0.00 0.00 43.79 2.87
429 430 2.125512 CGGCAAGGGTCGGAAGAG 60.126 66.667 0.00 0.00 43.49 2.85
430 431 2.943978 CGGCAAGGGTCGGAAGAGT 61.944 63.158 0.00 0.00 43.49 3.24
431 432 1.079057 GGCAAGGGTCGGAAGAGTC 60.079 63.158 0.00 0.00 43.49 3.36
432 433 1.446272 GCAAGGGTCGGAAGAGTCG 60.446 63.158 0.00 0.00 43.49 4.18
433 434 1.215647 CAAGGGTCGGAAGAGTCGG 59.784 63.158 0.00 0.00 43.49 4.79
434 435 2.647158 AAGGGTCGGAAGAGTCGGC 61.647 63.158 0.00 0.00 43.49 5.54
435 436 4.493747 GGGTCGGAAGAGTCGGCG 62.494 72.222 0.00 0.00 43.49 6.46
436 437 4.493747 GGTCGGAAGAGTCGGCGG 62.494 72.222 7.21 0.00 43.49 6.13
440 441 3.760035 GGAAGAGTCGGCGGCAGA 61.760 66.667 16.23 0.00 0.00 4.26
441 442 2.202676 GAAGAGTCGGCGGCAGAG 60.203 66.667 16.23 0.00 0.00 3.35
442 443 2.676822 AAGAGTCGGCGGCAGAGA 60.677 61.111 16.23 0.00 0.00 3.10
443 444 2.606155 GAAGAGTCGGCGGCAGAGAG 62.606 65.000 16.23 0.00 0.00 3.20
444 445 3.134792 GAGTCGGCGGCAGAGAGA 61.135 66.667 16.23 0.00 0.00 3.10
445 446 2.441164 AGTCGGCGGCAGAGAGAT 60.441 61.111 16.23 0.00 0.00 2.75
446 447 2.026879 GTCGGCGGCAGAGAGATC 59.973 66.667 6.63 0.00 0.00 2.75
447 448 3.586961 TCGGCGGCAGAGAGATCG 61.587 66.667 10.53 0.00 0.00 3.69
448 449 3.893763 CGGCGGCAGAGAGATCGT 61.894 66.667 10.53 0.00 0.00 3.73
449 450 2.543802 CGGCGGCAGAGAGATCGTA 61.544 63.158 10.53 0.00 0.00 3.43
450 451 1.284408 GGCGGCAGAGAGATCGTAG 59.716 63.158 3.07 0.00 0.00 3.51
451 452 1.167155 GGCGGCAGAGAGATCGTAGA 61.167 60.000 3.07 0.00 45.75 2.59
452 453 0.878416 GCGGCAGAGAGATCGTAGAT 59.122 55.000 0.00 0.00 45.12 1.98
453 454 1.135803 GCGGCAGAGAGATCGTAGATC 60.136 57.143 0.00 2.02 45.12 2.75
454 455 1.127766 CGGCAGAGAGATCGTAGATCG 59.872 57.143 4.60 0.00 45.12 3.69
455 456 1.135803 GGCAGAGAGATCGTAGATCGC 60.136 57.143 5.78 5.78 45.12 4.58
456 457 1.463363 GCAGAGAGATCGTAGATCGCG 60.463 57.143 0.00 0.00 45.12 5.87
457 458 1.127766 CAGAGAGATCGTAGATCGCGG 59.872 57.143 6.13 0.00 45.12 6.46
458 459 0.179210 GAGAGATCGTAGATCGCGGC 60.179 60.000 6.13 0.00 45.12 6.53
459 460 0.885150 AGAGATCGTAGATCGCGGCA 60.885 55.000 6.13 0.00 45.12 5.69
460 461 0.169230 GAGATCGTAGATCGCGGCAT 59.831 55.000 6.13 0.00 45.12 4.40
461 462 0.169230 AGATCGTAGATCGCGGCATC 59.831 55.000 6.13 2.36 45.12 3.91
462 463 1.128724 GATCGTAGATCGCGGCATCG 61.129 60.000 6.13 5.79 45.12 3.84
463 464 1.574702 ATCGTAGATCGCGGCATCGA 61.575 55.000 6.13 11.24 45.12 3.59
464 465 1.370051 CGTAGATCGCGGCATCGAA 60.370 57.895 6.13 0.00 42.15 3.71
465 466 1.330779 CGTAGATCGCGGCATCGAAG 61.331 60.000 6.13 0.00 42.15 3.79
466 467 1.004277 GTAGATCGCGGCATCGAAGG 61.004 60.000 6.13 0.00 42.15 3.46
467 468 1.170290 TAGATCGCGGCATCGAAGGA 61.170 55.000 6.13 0.00 42.15 3.36
468 469 2.018866 GATCGCGGCATCGAAGGAG 61.019 63.158 6.13 0.00 42.15 3.69
469 470 3.506059 ATCGCGGCATCGAAGGAGG 62.506 63.158 6.13 0.00 42.15 4.30
471 472 3.849951 GCGGCATCGAAGGAGGGA 61.850 66.667 0.00 0.00 39.00 4.20
472 473 2.107141 CGGCATCGAAGGAGGGAC 59.893 66.667 0.00 0.00 39.00 4.46
473 474 2.427245 CGGCATCGAAGGAGGGACT 61.427 63.158 0.00 0.00 39.81 3.85
474 475 1.908483 GGCATCGAAGGAGGGACTT 59.092 57.895 0.00 0.00 41.55 3.01
475 476 0.179070 GGCATCGAAGGAGGGACTTC 60.179 60.000 0.00 0.00 41.55 3.01
486 487 4.375406 GGACTTCGATCCCTGGGA 57.625 61.111 19.69 19.69 35.55 4.37
487 488 2.841595 GGACTTCGATCCCTGGGAT 58.158 57.895 28.15 28.15 46.28 3.85
488 489 0.394565 GGACTTCGATCCCTGGGATG 59.605 60.000 32.43 22.32 43.27 3.51
489 490 0.394565 GACTTCGATCCCTGGGATGG 59.605 60.000 32.43 29.31 43.27 3.51
490 491 1.056700 ACTTCGATCCCTGGGATGGG 61.057 60.000 32.43 22.24 43.27 4.00
497 498 4.627394 CCTGGGATGGGATCGAGA 57.373 61.111 0.00 0.00 0.00 4.04
498 499 2.360138 CCTGGGATGGGATCGAGAG 58.640 63.158 0.00 0.00 0.00 3.20
499 500 1.190833 CCTGGGATGGGATCGAGAGG 61.191 65.000 0.00 0.00 0.00 3.69
500 501 0.178950 CTGGGATGGGATCGAGAGGA 60.179 60.000 0.00 0.00 0.00 3.71
501 502 0.178950 TGGGATGGGATCGAGAGGAG 60.179 60.000 0.00 0.00 0.00 3.69
502 503 1.540435 GGGATGGGATCGAGAGGAGC 61.540 65.000 0.00 0.00 0.00 4.70
503 504 1.583986 GATGGGATCGAGAGGAGCG 59.416 63.158 0.00 0.00 0.00 5.03
504 505 1.872197 GATGGGATCGAGAGGAGCGG 61.872 65.000 0.00 0.00 0.00 5.52
505 506 2.203365 GGGATCGAGAGGAGCGGA 60.203 66.667 0.00 0.00 0.00 5.54
506 507 1.605165 GGGATCGAGAGGAGCGGAT 60.605 63.158 0.00 0.00 0.00 4.18
507 508 1.182385 GGGATCGAGAGGAGCGGATT 61.182 60.000 0.00 0.00 0.00 3.01
508 509 0.676736 GGATCGAGAGGAGCGGATTT 59.323 55.000 0.00 0.00 0.00 2.17
509 510 1.069358 GGATCGAGAGGAGCGGATTTT 59.931 52.381 0.00 0.00 0.00 1.82
510 511 2.399448 GATCGAGAGGAGCGGATTTTC 58.601 52.381 0.00 0.00 0.00 2.29
511 512 1.475403 TCGAGAGGAGCGGATTTTCT 58.525 50.000 0.00 0.00 0.00 2.52
512 513 1.135139 TCGAGAGGAGCGGATTTTCTG 59.865 52.381 0.00 0.00 0.00 3.02
521 522 2.838386 CGGATTTTCTGCAGTGATGG 57.162 50.000 14.67 0.00 0.00 3.51
522 523 2.358957 CGGATTTTCTGCAGTGATGGA 58.641 47.619 14.67 0.00 0.00 3.41
523 524 2.353889 CGGATTTTCTGCAGTGATGGAG 59.646 50.000 14.67 0.00 0.00 3.86
524 525 3.350833 GGATTTTCTGCAGTGATGGAGT 58.649 45.455 14.67 0.00 0.00 3.85
525 526 3.760684 GGATTTTCTGCAGTGATGGAGTT 59.239 43.478 14.67 0.00 0.00 3.01
526 527 4.219288 GGATTTTCTGCAGTGATGGAGTTT 59.781 41.667 14.67 0.00 0.00 2.66
527 528 5.279156 GGATTTTCTGCAGTGATGGAGTTTT 60.279 40.000 14.67 0.00 0.00 2.43
528 529 5.596836 TTTTCTGCAGTGATGGAGTTTTT 57.403 34.783 14.67 0.00 0.00 1.94
551 552 3.428282 CGTTTGTACGGGGGCAGC 61.428 66.667 0.00 0.00 43.94 5.25
552 553 3.428282 GTTTGTACGGGGGCAGCG 61.428 66.667 0.00 0.00 0.00 5.18
553 554 4.708386 TTTGTACGGGGGCAGCGG 62.708 66.667 0.00 0.00 0.00 5.52
600 601 6.843069 AAAACAAAAGAAAATGATGGGACG 57.157 33.333 0.00 0.00 0.00 4.79
601 602 5.782893 AACAAAAGAAAATGATGGGACGA 57.217 34.783 0.00 0.00 0.00 4.20
602 603 5.782893 ACAAAAGAAAATGATGGGACGAA 57.217 34.783 0.00 0.00 0.00 3.85
603 604 6.155475 ACAAAAGAAAATGATGGGACGAAA 57.845 33.333 0.00 0.00 0.00 3.46
604 605 6.578023 ACAAAAGAAAATGATGGGACGAAAA 58.422 32.000 0.00 0.00 0.00 2.29
605 606 7.216494 ACAAAAGAAAATGATGGGACGAAAAT 58.784 30.769 0.00 0.00 0.00 1.82
606 607 8.364142 ACAAAAGAAAATGATGGGACGAAAATA 58.636 29.630 0.00 0.00 0.00 1.40
607 608 9.202273 CAAAAGAAAATGATGGGACGAAAATAA 57.798 29.630 0.00 0.00 0.00 1.40
608 609 9.771534 AAAAGAAAATGATGGGACGAAAATAAA 57.228 25.926 0.00 0.00 0.00 1.40
609 610 8.757164 AAGAAAATGATGGGACGAAAATAAAC 57.243 30.769 0.00 0.00 0.00 2.01
610 611 8.122472 AGAAAATGATGGGACGAAAATAAACT 57.878 30.769 0.00 0.00 0.00 2.66
611 612 9.238368 AGAAAATGATGGGACGAAAATAAACTA 57.762 29.630 0.00 0.00 0.00 2.24
613 614 9.801873 AAAATGATGGGACGAAAATAAACTATG 57.198 29.630 0.00 0.00 0.00 2.23
614 615 6.935741 TGATGGGACGAAAATAAACTATGG 57.064 37.500 0.00 0.00 0.00 2.74
615 616 6.654959 TGATGGGACGAAAATAAACTATGGA 58.345 36.000 0.00 0.00 0.00 3.41
616 617 7.287061 TGATGGGACGAAAATAAACTATGGAT 58.713 34.615 0.00 0.00 0.00 3.41
617 618 8.433599 TGATGGGACGAAAATAAACTATGGATA 58.566 33.333 0.00 0.00 0.00 2.59
618 619 8.617290 ATGGGACGAAAATAAACTATGGATAC 57.383 34.615 0.00 0.00 0.00 2.24
619 620 7.798071 TGGGACGAAAATAAACTATGGATACT 58.202 34.615 0.00 0.00 37.61 2.12
620 621 8.926374 TGGGACGAAAATAAACTATGGATACTA 58.074 33.333 0.00 0.00 37.61 1.82
621 622 9.939802 GGGACGAAAATAAACTATGGATACTAT 57.060 33.333 0.00 0.00 37.61 2.12
637 638 9.857656 ATGGATACTATTCATCAACTCAAACAT 57.142 29.630 0.00 0.00 37.61 2.71
638 639 9.685276 TGGATACTATTCATCAACTCAAACATT 57.315 29.630 0.00 0.00 37.61 2.71
679 680 9.639601 ACCTGAAAAATATAGTTTTGCTAAAGC 57.360 29.630 15.08 0.74 42.50 3.51
704 705 6.964741 CATCTAGATGTGCCATAAGTCATC 57.035 41.667 22.42 0.00 37.52 2.92
705 706 6.699366 CATCTAGATGTGCCATAAGTCATCT 58.301 40.000 22.42 10.55 45.56 2.90
706 707 6.094193 TCTAGATGTGCCATAAGTCATCTG 57.906 41.667 14.22 6.84 44.13 2.90
707 708 5.835280 TCTAGATGTGCCATAAGTCATCTGA 59.165 40.000 14.22 8.50 44.13 3.27
708 709 4.958509 AGATGTGCCATAAGTCATCTGAG 58.041 43.478 5.85 0.00 43.22 3.35
709 710 4.408270 AGATGTGCCATAAGTCATCTGAGT 59.592 41.667 5.85 0.00 43.22 3.41
710 711 4.128925 TGTGCCATAAGTCATCTGAGTC 57.871 45.455 0.00 0.00 0.00 3.36
711 712 3.118629 TGTGCCATAAGTCATCTGAGTCC 60.119 47.826 0.00 0.00 0.00 3.85
712 713 3.133721 GTGCCATAAGTCATCTGAGTCCT 59.866 47.826 0.00 0.00 0.00 3.85
713 714 4.342378 GTGCCATAAGTCATCTGAGTCCTA 59.658 45.833 0.00 0.00 0.00 2.94
714 715 4.342378 TGCCATAAGTCATCTGAGTCCTAC 59.658 45.833 0.00 0.00 0.00 3.18
715 716 4.342378 GCCATAAGTCATCTGAGTCCTACA 59.658 45.833 0.00 0.00 0.00 2.74
716 717 5.011533 GCCATAAGTCATCTGAGTCCTACAT 59.988 44.000 0.00 0.00 0.00 2.29
717 718 6.463614 GCCATAAGTCATCTGAGTCCTACATT 60.464 42.308 0.00 0.00 0.00 2.71
718 719 7.255977 GCCATAAGTCATCTGAGTCCTACATTA 60.256 40.741 0.00 0.00 0.00 1.90
719 720 8.811017 CCATAAGTCATCTGAGTCCTACATTAT 58.189 37.037 0.00 0.00 0.00 1.28
722 723 7.904558 AGTCATCTGAGTCCTACATTATTGA 57.095 36.000 0.00 0.00 0.00 2.57
723 724 8.489676 AGTCATCTGAGTCCTACATTATTGAT 57.510 34.615 0.00 0.00 0.00 2.57
724 725 8.584157 AGTCATCTGAGTCCTACATTATTGATC 58.416 37.037 0.00 0.00 0.00 2.92
725 726 8.584157 GTCATCTGAGTCCTACATTATTGATCT 58.416 37.037 0.00 0.00 0.00 2.75
726 727 9.152327 TCATCTGAGTCCTACATTATTGATCTT 57.848 33.333 0.00 0.00 0.00 2.40
729 730 8.568794 TCTGAGTCCTACATTATTGATCTTACG 58.431 37.037 0.00 0.00 0.00 3.18
730 731 7.145985 TGAGTCCTACATTATTGATCTTACGC 58.854 38.462 0.00 0.00 0.00 4.42
731 732 6.150318 AGTCCTACATTATTGATCTTACGCG 58.850 40.000 3.53 3.53 0.00 6.01
732 733 5.345202 GTCCTACATTATTGATCTTACGCGG 59.655 44.000 12.47 0.00 0.00 6.46
733 734 5.242171 TCCTACATTATTGATCTTACGCGGA 59.758 40.000 12.47 0.00 0.00 5.54
734 735 5.573282 CCTACATTATTGATCTTACGCGGAG 59.427 44.000 12.47 8.39 0.00 4.63
735 736 5.196341 ACATTATTGATCTTACGCGGAGA 57.804 39.130 12.47 14.20 0.00 3.71
736 737 5.784177 ACATTATTGATCTTACGCGGAGAT 58.216 37.500 22.13 22.13 36.60 2.75
737 738 6.223852 ACATTATTGATCTTACGCGGAGATT 58.776 36.000 22.61 13.04 34.13 2.40
738 739 6.706270 ACATTATTGATCTTACGCGGAGATTT 59.294 34.615 22.61 15.14 34.13 2.17
739 740 6.525121 TTATTGATCTTACGCGGAGATTTG 57.475 37.500 22.61 2.73 34.13 2.32
740 741 3.520290 TGATCTTACGCGGAGATTTGT 57.480 42.857 22.61 6.93 34.13 2.83
741 742 3.186909 TGATCTTACGCGGAGATTTGTG 58.813 45.455 22.61 0.00 34.13 3.33
742 743 2.736144 TCTTACGCGGAGATTTGTGT 57.264 45.000 12.47 0.00 0.00 3.72
743 744 2.333926 TCTTACGCGGAGATTTGTGTG 58.666 47.619 12.47 0.00 0.00 3.82
744 745 2.029739 TCTTACGCGGAGATTTGTGTGA 60.030 45.455 12.47 0.00 0.00 3.58
745 746 1.990799 TACGCGGAGATTTGTGTGAG 58.009 50.000 12.47 0.00 0.00 3.51
746 747 0.317160 ACGCGGAGATTTGTGTGAGA 59.683 50.000 12.47 0.00 0.00 3.27
747 748 1.270094 ACGCGGAGATTTGTGTGAGAA 60.270 47.619 12.47 0.00 0.00 2.87
748 749 2.002586 CGCGGAGATTTGTGTGAGAAT 58.997 47.619 0.00 0.00 0.00 2.40
749 750 2.416547 CGCGGAGATTTGTGTGAGAATT 59.583 45.455 0.00 0.00 0.00 2.17
750 751 3.120199 CGCGGAGATTTGTGTGAGAATTT 60.120 43.478 0.00 0.00 0.00 1.82
751 752 4.613622 CGCGGAGATTTGTGTGAGAATTTT 60.614 41.667 0.00 0.00 0.00 1.82
752 753 4.853743 GCGGAGATTTGTGTGAGAATTTTC 59.146 41.667 0.00 0.00 0.00 2.29
753 754 5.335191 GCGGAGATTTGTGTGAGAATTTTCT 60.335 40.000 0.00 0.00 41.00 2.52
754 755 6.672147 CGGAGATTTGTGTGAGAATTTTCTT 58.328 36.000 0.00 0.00 37.73 2.52
755 756 7.141363 CGGAGATTTGTGTGAGAATTTTCTTT 58.859 34.615 0.00 0.00 37.73 2.52
756 757 7.649306 CGGAGATTTGTGTGAGAATTTTCTTTT 59.351 33.333 0.00 0.00 37.73 2.27
757 758 8.972349 GGAGATTTGTGTGAGAATTTTCTTTTC 58.028 33.333 0.00 0.00 37.73 2.29
758 759 9.741647 GAGATTTGTGTGAGAATTTTCTTTTCT 57.258 29.630 0.00 0.00 37.73 2.52
792 793 6.795098 TTTTGCTTGATTAAGTCGCTTAGA 57.205 33.333 0.00 0.00 36.27 2.10
801 802 4.521075 TCGCTTAGACATGCTGGC 57.479 55.556 0.00 0.48 0.00 4.85
802 803 1.519234 TCGCTTAGACATGCTGGCG 60.519 57.895 20.80 20.80 45.03 5.69
803 804 1.811266 CGCTTAGACATGCTGGCGT 60.811 57.895 19.69 0.00 41.63 5.68
804 805 0.527600 CGCTTAGACATGCTGGCGTA 60.528 55.000 19.69 0.00 41.63 4.42
805 806 1.212616 GCTTAGACATGCTGGCGTAG 58.787 55.000 0.00 0.00 0.00 3.51
806 807 1.202417 GCTTAGACATGCTGGCGTAGA 60.202 52.381 0.00 0.00 0.00 2.59
807 808 2.738643 GCTTAGACATGCTGGCGTAGAA 60.739 50.000 0.00 0.00 0.00 2.10
808 809 3.521560 CTTAGACATGCTGGCGTAGAAA 58.478 45.455 0.00 0.00 0.00 2.52
809 810 2.472695 AGACATGCTGGCGTAGAAAA 57.527 45.000 0.00 0.00 0.00 2.29
810 811 2.778299 AGACATGCTGGCGTAGAAAAA 58.222 42.857 0.00 0.00 0.00 1.94
896 915 0.979187 TACCAATCCCGACCACCTCC 60.979 60.000 0.00 0.00 0.00 4.30
951 971 3.181461 CCATTTCTAATCCTCCTCGCACT 60.181 47.826 0.00 0.00 0.00 4.40
979 999 2.597805 TCTAGGGATCGAGCCGGC 60.598 66.667 21.89 21.89 0.00 6.13
1244 1264 1.507140 ACCCTCTGATTCGGGCATAA 58.493 50.000 0.58 0.00 44.63 1.90
1274 1294 2.032528 CCTCCTCTTTGTGGCGCA 59.967 61.111 10.83 0.00 0.00 6.09
1311 1333 2.230025 CGTATATGCCTGACTCCCAGAG 59.770 54.545 0.00 0.00 45.78 3.35
1312 1334 1.727062 ATATGCCTGACTCCCAGAGG 58.273 55.000 0.00 0.00 45.78 3.69
1488 3403 8.313292 TGAAATGTCCAATTTAAGAATCTTGGG 58.687 33.333 5.64 0.13 0.00 4.12
1490 3405 4.466015 TGTCCAATTTAAGAATCTTGGGCC 59.534 41.667 5.64 0.00 30.16 5.80
1491 3406 4.466015 GTCCAATTTAAGAATCTTGGGCCA 59.534 41.667 0.00 0.00 26.53 5.36
1531 3446 0.976641 TGGCCAGAGTTGGTAGTCTG 59.023 55.000 0.00 0.00 46.88 3.51
1551 3466 3.169908 TGTGCTCTATGGGTACACTTGA 58.830 45.455 0.00 0.00 32.49 3.02
1552 3467 3.774766 TGTGCTCTATGGGTACACTTGAT 59.225 43.478 0.00 0.00 32.49 2.57
1553 3468 4.959839 TGTGCTCTATGGGTACACTTGATA 59.040 41.667 0.00 0.00 32.49 2.15
1554 3469 5.423931 TGTGCTCTATGGGTACACTTGATAA 59.576 40.000 0.00 0.00 32.49 1.75
1555 3470 5.986135 GTGCTCTATGGGTACACTTGATAAG 59.014 44.000 0.00 0.00 0.00 1.73
1689 3607 9.543783 AACGATATTCTTCTACCCTTTATTGAC 57.456 33.333 0.00 0.00 0.00 3.18
1821 3739 2.535012 TCGTGAATACACAGGTTGCA 57.465 45.000 0.00 0.00 46.20 4.08
1955 3873 9.985730 ATGACAATTATGACTTTGTTGTTTGAT 57.014 25.926 0.00 0.00 36.25 2.57
1976 3894 7.184800 TGATGACTGTGTTTGTTATGTGTAC 57.815 36.000 0.00 0.00 0.00 2.90
2044 3962 8.791605 CGATGATCATTTTGTTTCAATGTAGTG 58.208 33.333 10.14 0.00 33.91 2.74
2108 4026 7.446931 TCAAGTGCTTACTTGGTATCAAAATGA 59.553 33.333 17.22 0.00 45.15 2.57
2290 4209 2.101750 CCACTTGTTGTACAAAACCCCC 59.898 50.000 10.51 0.00 37.69 5.40
2467 4386 9.265901 CGGAATCTGTCATTATAGAACATTCTT 57.734 33.333 0.00 0.00 38.70 2.52
2481 4400 3.308401 ACATTCTTCCCTTTTGCCTTGT 58.692 40.909 0.00 0.00 0.00 3.16
2482 4401 4.479158 ACATTCTTCCCTTTTGCCTTGTA 58.521 39.130 0.00 0.00 0.00 2.41
2541 4460 1.737793 CTGTTCGATTTGGGTGGCTAC 59.262 52.381 0.00 0.00 0.00 3.58
2769 4688 7.558807 TGGAAGATATTCTGTGATTGCTTCAAT 59.441 33.333 0.00 0.00 35.70 2.57
3066 4985 2.158943 GGTAGGCGGAAATTGCTCTACT 60.159 50.000 11.82 0.00 36.84 2.57
3380 5318 9.212641 CAATATATTGGACAAGTGACAGATAGG 57.787 37.037 16.41 0.00 34.22 2.57
3381 5319 3.334583 TTGGACAAGTGACAGATAGGC 57.665 47.619 0.00 0.00 0.00 3.93
3394 5332 3.118482 ACAGATAGGCCATCAGTGAGTTG 60.118 47.826 5.01 1.67 32.55 3.16
3552 5490 3.250762 GTGAGTGCTCAACATGTTTAGCA 59.749 43.478 33.18 33.18 44.59 3.49
3711 5649 2.593725 AGAGATACGCGCGCCCTA 60.594 61.111 32.58 16.07 0.00 3.53
3738 5676 2.031157 CGAGTTTTCTTTTGGGCGTGAT 60.031 45.455 0.00 0.00 0.00 3.06
3930 5871 4.580580 CCACTTACAGCCAACTTCTTTTCT 59.419 41.667 0.00 0.00 0.00 2.52
3967 5908 3.479203 CTGCACCGGCCCTGGATA 61.479 66.667 0.00 0.00 40.13 2.59
3971 5912 0.328258 GCACCGGCCCTGGATATAAT 59.672 55.000 0.00 0.00 0.00 1.28
4079 6020 2.158842 GGTGGATCATCCTCCTTCACTG 60.159 54.545 16.54 0.00 44.65 3.66
4127 6068 2.799017 TCTGCGTCTAGGTTTCCTGTA 58.201 47.619 0.00 0.00 34.61 2.74
4221 6162 4.010349 GGTAATGAAGGGAAAGTCACCAG 58.990 47.826 0.00 0.00 0.00 4.00
4248 6189 0.584396 TTTGCTGGCGTAAAGACACG 59.416 50.000 0.00 0.00 44.71 4.49
4307 6248 1.483827 CTTCAGCAGCCACTCCATCTA 59.516 52.381 0.00 0.00 0.00 1.98
4308 6249 1.798626 TCAGCAGCCACTCCATCTAT 58.201 50.000 0.00 0.00 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.377202 GCCTTCATTGCGGACCTCA 60.377 57.895 0.00 0.00 0.00 3.86
1 2 3.502572 GCCTTCATTGCGGACCTC 58.497 61.111 0.00 0.00 0.00 3.85
8 9 2.025156 CGATGCCGCCTTCATTGC 59.975 61.111 0.00 0.00 0.00 3.56
9 10 2.717485 CCGATGCCGCCTTCATTG 59.283 61.111 0.00 0.00 0.00 2.82
10 11 3.211963 GCCGATGCCGCCTTCATT 61.212 61.111 0.00 0.00 0.00 2.57
11 12 4.181010 AGCCGATGCCGCCTTCAT 62.181 61.111 0.00 0.00 38.69 2.57
12 13 4.838152 GAGCCGATGCCGCCTTCA 62.838 66.667 0.00 0.00 38.69 3.02
17 18 4.959596 GAGAGGAGCCGATGCCGC 62.960 72.222 0.00 0.00 38.69 6.53
18 19 1.527433 TATGAGAGGAGCCGATGCCG 61.527 60.000 0.00 0.00 38.69 5.69
19 20 0.037790 GTATGAGAGGAGCCGATGCC 60.038 60.000 0.00 0.00 38.69 4.40
20 21 0.037790 GGTATGAGAGGAGCCGATGC 60.038 60.000 0.00 0.00 37.95 3.91
21 22 1.543802 GAGGTATGAGAGGAGCCGATG 59.456 57.143 0.00 0.00 0.00 3.84
22 23 1.549037 GGAGGTATGAGAGGAGCCGAT 60.549 57.143 0.00 0.00 0.00 4.18
23 24 0.178987 GGAGGTATGAGAGGAGCCGA 60.179 60.000 0.00 0.00 0.00 5.54
24 25 1.519751 CGGAGGTATGAGAGGAGCCG 61.520 65.000 0.00 0.00 0.00 5.52
25 26 1.811645 GCGGAGGTATGAGAGGAGCC 61.812 65.000 0.00 0.00 0.00 4.70
26 27 1.663173 GCGGAGGTATGAGAGGAGC 59.337 63.158 0.00 0.00 0.00 4.70
27 28 1.519751 CCGCGGAGGTATGAGAGGAG 61.520 65.000 24.07 0.00 34.51 3.69
28 29 1.528542 CCGCGGAGGTATGAGAGGA 60.529 63.158 24.07 0.00 34.51 3.71
29 30 3.043419 CCGCGGAGGTATGAGAGG 58.957 66.667 24.07 0.00 34.51 3.69
30 31 2.336809 GCCGCGGAGGTATGAGAG 59.663 66.667 33.48 0.00 43.70 3.20
31 32 3.592814 CGCCGCGGAGGTATGAGA 61.593 66.667 33.48 0.00 43.70 3.27
54 55 1.153823 GGACCTCATCACGGTGTCG 60.154 63.158 8.17 0.72 43.02 4.35
55 56 1.153823 CGGACCTCATCACGGTGTC 60.154 63.158 8.17 0.00 34.19 3.67
56 57 2.646175 CCGGACCTCATCACGGTGT 61.646 63.158 8.17 0.00 36.77 4.16
57 58 2.184322 CCGGACCTCATCACGGTG 59.816 66.667 0.00 0.56 36.77 4.94
58 59 3.771160 GCCGGACCTCATCACGGT 61.771 66.667 5.05 0.00 40.98 4.83
59 60 4.873129 CGCCGGACCTCATCACGG 62.873 72.222 5.05 0.00 41.50 4.94
60 61 4.873129 CCGCCGGACCTCATCACG 62.873 72.222 5.05 0.00 0.00 4.35
61 62 3.432051 CTCCGCCGGACCTCATCAC 62.432 68.421 5.05 0.00 0.00 3.06
62 63 3.147595 CTCCGCCGGACCTCATCA 61.148 66.667 5.05 0.00 0.00 3.07
63 64 3.917760 CCTCCGCCGGACCTCATC 61.918 72.222 5.05 0.00 0.00 2.92
84 85 4.933064 GCCGCCGACATCCGAGAG 62.933 72.222 0.00 0.00 41.76 3.20
94 95 4.847516 CGAGATTGTCGCCGCCGA 62.848 66.667 0.00 0.00 43.03 5.54
102 103 2.735762 GCCACTGAGGTACGAGATTGTC 60.736 54.545 0.00 0.00 40.61 3.18
103 104 1.204941 GCCACTGAGGTACGAGATTGT 59.795 52.381 0.00 0.00 40.61 2.71
104 105 1.799181 CGCCACTGAGGTACGAGATTG 60.799 57.143 0.00 0.00 40.61 2.67
105 106 0.456221 CGCCACTGAGGTACGAGATT 59.544 55.000 0.00 0.00 40.61 2.40
106 107 1.384989 CCGCCACTGAGGTACGAGAT 61.385 60.000 0.00 0.00 40.61 2.75
107 108 2.044555 CCGCCACTGAGGTACGAGA 61.045 63.158 0.00 0.00 40.61 4.04
108 109 2.490217 CCGCCACTGAGGTACGAG 59.510 66.667 0.00 0.00 40.61 4.18
109 110 3.066190 CCCGCCACTGAGGTACGA 61.066 66.667 0.00 0.00 40.61 3.43
110 111 4.814294 GCCCGCCACTGAGGTACG 62.814 72.222 0.00 0.00 40.61 3.67
111 112 4.814294 CGCCCGCCACTGAGGTAC 62.814 72.222 0.00 0.00 40.61 3.34
114 115 4.473520 ATTCGCCCGCCACTGAGG 62.474 66.667 0.00 0.00 41.84 3.86
115 116 3.197790 CATTCGCCCGCCACTGAG 61.198 66.667 0.00 0.00 0.00 3.35
116 117 4.776322 CCATTCGCCCGCCACTGA 62.776 66.667 0.00 0.00 0.00 3.41
117 118 3.673956 TACCATTCGCCCGCCACTG 62.674 63.158 0.00 0.00 0.00 3.66
118 119 3.395702 TACCATTCGCCCGCCACT 61.396 61.111 0.00 0.00 0.00 4.00
119 120 3.199891 GTACCATTCGCCCGCCAC 61.200 66.667 0.00 0.00 0.00 5.01
120 121 3.673956 CTGTACCATTCGCCCGCCA 62.674 63.158 0.00 0.00 0.00 5.69
121 122 2.862674 TTCTGTACCATTCGCCCGCC 62.863 60.000 0.00 0.00 0.00 6.13
122 123 1.022451 TTTCTGTACCATTCGCCCGC 61.022 55.000 0.00 0.00 0.00 6.13
123 124 0.725117 GTTTCTGTACCATTCGCCCG 59.275 55.000 0.00 0.00 0.00 6.13
124 125 1.467342 GTGTTTCTGTACCATTCGCCC 59.533 52.381 0.00 0.00 0.00 6.13
125 126 2.147958 TGTGTTTCTGTACCATTCGCC 58.852 47.619 0.00 0.00 0.00 5.54
126 127 3.188460 ACATGTGTTTCTGTACCATTCGC 59.812 43.478 0.00 0.00 0.00 4.70
127 128 4.213270 ACACATGTGTTTCTGTACCATTCG 59.787 41.667 25.76 0.00 41.83 3.34
128 129 5.689383 ACACATGTGTTTCTGTACCATTC 57.311 39.130 25.76 0.00 41.83 2.67
129 130 6.426937 GTCTACACATGTGTTTCTGTACCATT 59.573 38.462 34.66 9.24 41.83 3.16
130 131 5.932303 GTCTACACATGTGTTTCTGTACCAT 59.068 40.000 34.66 9.45 41.83 3.55
131 132 5.069914 AGTCTACACATGTGTTTCTGTACCA 59.930 40.000 34.66 13.81 41.83 3.25
132 133 5.405571 CAGTCTACACATGTGTTTCTGTACC 59.594 44.000 34.66 14.69 41.83 3.34
133 134 6.213677 TCAGTCTACACATGTGTTTCTGTAC 58.786 40.000 34.66 21.57 41.83 2.90
134 135 6.399639 TCAGTCTACACATGTGTTTCTGTA 57.600 37.500 34.66 22.36 41.83 2.74
135 136 5.276461 TCAGTCTACACATGTGTTTCTGT 57.724 39.130 34.66 14.53 41.83 3.41
136 137 6.347969 CCATTCAGTCTACACATGTGTTTCTG 60.348 42.308 34.66 31.76 41.83 3.02
137 138 5.702670 CCATTCAGTCTACACATGTGTTTCT 59.297 40.000 34.66 24.85 41.83 2.52
138 139 5.700832 TCCATTCAGTCTACACATGTGTTTC 59.299 40.000 34.66 23.28 41.83 2.78
139 140 5.620206 TCCATTCAGTCTACACATGTGTTT 58.380 37.500 34.66 15.19 41.83 2.83
140 141 5.221722 ACTCCATTCAGTCTACACATGTGTT 60.222 40.000 34.66 19.27 41.83 3.32
141 142 4.284490 ACTCCATTCAGTCTACACATGTGT 59.716 41.667 32.47 32.47 46.87 3.72
142 143 4.825422 ACTCCATTCAGTCTACACATGTG 58.175 43.478 24.25 24.25 0.00 3.21
143 144 5.482908 GAACTCCATTCAGTCTACACATGT 58.517 41.667 0.00 0.00 37.27 3.21
144 145 4.564372 CGAACTCCATTCAGTCTACACATG 59.436 45.833 0.00 0.00 37.12 3.21
145 146 4.382040 CCGAACTCCATTCAGTCTACACAT 60.382 45.833 0.00 0.00 37.12 3.21
146 147 3.056821 CCGAACTCCATTCAGTCTACACA 60.057 47.826 0.00 0.00 37.12 3.72
147 148 3.512680 CCGAACTCCATTCAGTCTACAC 58.487 50.000 0.00 0.00 37.12 2.90
148 149 2.094182 GCCGAACTCCATTCAGTCTACA 60.094 50.000 0.00 0.00 37.12 2.74
149 150 2.541556 GCCGAACTCCATTCAGTCTAC 58.458 52.381 0.00 0.00 37.12 2.59
150 151 1.134367 CGCCGAACTCCATTCAGTCTA 59.866 52.381 0.00 0.00 37.12 2.59
151 152 0.108615 CGCCGAACTCCATTCAGTCT 60.109 55.000 0.00 0.00 37.12 3.24
152 153 1.084370 CCGCCGAACTCCATTCAGTC 61.084 60.000 0.00 0.00 37.12 3.51
153 154 1.079127 CCGCCGAACTCCATTCAGT 60.079 57.895 0.00 0.00 37.12 3.41
154 155 1.079127 ACCGCCGAACTCCATTCAG 60.079 57.895 0.00 0.00 37.12 3.02
155 156 1.375396 CACCGCCGAACTCCATTCA 60.375 57.895 0.00 0.00 37.12 2.57
156 157 1.079405 TCACCGCCGAACTCCATTC 60.079 57.895 0.00 0.00 0.00 2.67
157 158 1.079127 CTCACCGCCGAACTCCATT 60.079 57.895 0.00 0.00 0.00 3.16
158 159 1.330655 ATCTCACCGCCGAACTCCAT 61.331 55.000 0.00 0.00 0.00 3.41
159 160 1.541310 AATCTCACCGCCGAACTCCA 61.541 55.000 0.00 0.00 0.00 3.86
160 161 0.458669 TAATCTCACCGCCGAACTCC 59.541 55.000 0.00 0.00 0.00 3.85
161 162 2.510768 ATAATCTCACCGCCGAACTC 57.489 50.000 0.00 0.00 0.00 3.01
162 163 2.936498 CAAATAATCTCACCGCCGAACT 59.064 45.455 0.00 0.00 0.00 3.01
163 164 2.031683 CCAAATAATCTCACCGCCGAAC 59.968 50.000 0.00 0.00 0.00 3.95
164 165 2.285083 CCAAATAATCTCACCGCCGAA 58.715 47.619 0.00 0.00 0.00 4.30
165 166 1.948104 CCAAATAATCTCACCGCCGA 58.052 50.000 0.00 0.00 0.00 5.54
166 167 0.307760 GCCAAATAATCTCACCGCCG 59.692 55.000 0.00 0.00 0.00 6.46
167 168 1.334869 CTGCCAAATAATCTCACCGCC 59.665 52.381 0.00 0.00 0.00 6.13
168 169 1.268743 GCTGCCAAATAATCTCACCGC 60.269 52.381 0.00 0.00 0.00 5.68
169 170 1.334869 GGCTGCCAAATAATCTCACCG 59.665 52.381 15.17 0.00 0.00 4.94
170 171 2.360165 CTGGCTGCCAAATAATCTCACC 59.640 50.000 23.51 0.00 30.80 4.02
171 172 3.282021 TCTGGCTGCCAAATAATCTCAC 58.718 45.455 23.51 0.00 30.80 3.51
172 173 3.650281 TCTGGCTGCCAAATAATCTCA 57.350 42.857 23.51 0.00 30.80 3.27
173 174 4.396522 AGATCTGGCTGCCAAATAATCTC 58.603 43.478 23.51 3.50 30.80 2.75
174 175 4.104420 AGAGATCTGGCTGCCAAATAATCT 59.896 41.667 23.51 23.84 30.80 2.40
175 176 4.396522 AGAGATCTGGCTGCCAAATAATC 58.603 43.478 23.51 20.16 30.80 1.75
176 177 4.450305 AGAGATCTGGCTGCCAAATAAT 57.550 40.909 23.51 13.28 30.80 1.28
177 178 3.939740 AGAGATCTGGCTGCCAAATAA 57.060 42.857 23.51 8.89 30.80 1.40
178 179 3.200605 TGAAGAGATCTGGCTGCCAAATA 59.799 43.478 23.51 11.49 30.80 1.40
179 180 2.025605 TGAAGAGATCTGGCTGCCAAAT 60.026 45.455 23.51 16.01 30.80 2.32
180 181 1.352017 TGAAGAGATCTGGCTGCCAAA 59.648 47.619 23.51 10.69 30.80 3.28
181 182 0.986527 TGAAGAGATCTGGCTGCCAA 59.013 50.000 23.51 13.82 30.80 4.52
182 183 0.540454 CTGAAGAGATCTGGCTGCCA 59.460 55.000 21.96 21.96 0.00 4.92
183 184 0.814812 GCTGAAGAGATCTGGCTGCC 60.815 60.000 12.87 12.87 0.00 4.85
184 185 0.107800 TGCTGAAGAGATCTGGCTGC 60.108 55.000 0.00 5.53 0.00 5.25
185 186 2.623878 ATGCTGAAGAGATCTGGCTG 57.376 50.000 0.00 0.00 0.00 4.85
186 187 3.307506 AGTATGCTGAAGAGATCTGGCT 58.692 45.455 0.00 0.00 0.00 4.75
187 188 3.749665 AGTATGCTGAAGAGATCTGGC 57.250 47.619 0.00 0.00 0.00 4.85
188 189 4.378774 CCAAGTATGCTGAAGAGATCTGG 58.621 47.826 0.00 0.00 0.00 3.86
189 190 4.100653 TCCCAAGTATGCTGAAGAGATCTG 59.899 45.833 0.00 0.00 0.00 2.90
190 191 4.293494 TCCCAAGTATGCTGAAGAGATCT 58.707 43.478 0.00 0.00 0.00 2.75
191 192 4.679373 TCCCAAGTATGCTGAAGAGATC 57.321 45.455 0.00 0.00 0.00 2.75
192 193 5.131642 TCAATCCCAAGTATGCTGAAGAGAT 59.868 40.000 0.00 0.00 0.00 2.75
193 194 4.471025 TCAATCCCAAGTATGCTGAAGAGA 59.529 41.667 0.00 0.00 0.00 3.10
194 195 4.774124 TCAATCCCAAGTATGCTGAAGAG 58.226 43.478 0.00 0.00 0.00 2.85
195 196 4.842531 TCAATCCCAAGTATGCTGAAGA 57.157 40.909 0.00 0.00 0.00 2.87
196 197 5.393461 GGTTTCAATCCCAAGTATGCTGAAG 60.393 44.000 0.00 0.00 0.00 3.02
197 198 4.462483 GGTTTCAATCCCAAGTATGCTGAA 59.538 41.667 0.00 0.00 0.00 3.02
198 199 4.016444 GGTTTCAATCCCAAGTATGCTGA 58.984 43.478 0.00 0.00 0.00 4.26
199 200 3.181497 CGGTTTCAATCCCAAGTATGCTG 60.181 47.826 0.00 0.00 0.00 4.41
200 201 3.016736 CGGTTTCAATCCCAAGTATGCT 58.983 45.455 0.00 0.00 0.00 3.79
201 202 2.479560 GCGGTTTCAATCCCAAGTATGC 60.480 50.000 0.00 0.00 0.00 3.14
202 203 2.099098 GGCGGTTTCAATCCCAAGTATG 59.901 50.000 0.00 0.00 0.00 2.39
203 204 2.375146 GGCGGTTTCAATCCCAAGTAT 58.625 47.619 0.00 0.00 0.00 2.12
204 205 1.828979 GGCGGTTTCAATCCCAAGTA 58.171 50.000 0.00 0.00 0.00 2.24
205 206 1.241315 CGGCGGTTTCAATCCCAAGT 61.241 55.000 0.00 0.00 0.00 3.16
206 207 1.506262 CGGCGGTTTCAATCCCAAG 59.494 57.895 0.00 0.00 0.00 3.61
207 208 2.631580 GCGGCGGTTTCAATCCCAA 61.632 57.895 9.78 0.00 0.00 4.12
208 209 3.059386 GCGGCGGTTTCAATCCCA 61.059 61.111 9.78 0.00 0.00 4.37
209 210 3.822192 GGCGGCGGTTTCAATCCC 61.822 66.667 9.78 0.00 0.00 3.85
210 211 4.174129 CGGCGGCGGTTTCAATCC 62.174 66.667 25.36 0.00 0.00 3.01
211 212 4.829518 GCGGCGGCGGTTTCAATC 62.830 66.667 33.02 9.65 0.00 2.67
229 230 4.840005 CCGAGGGAAGAAGCCGCC 62.840 72.222 0.00 0.00 0.00 6.13
230 231 3.771160 TCCGAGGGAAGAAGCCGC 61.771 66.667 0.00 0.00 0.00 6.53
231 232 2.184579 GTCCGAGGGAAGAAGCCG 59.815 66.667 0.00 0.00 31.38 5.52
232 233 2.184579 CGTCCGAGGGAAGAAGCC 59.815 66.667 0.00 0.00 33.09 4.35
233 234 2.184579 CCGTCCGAGGGAAGAAGC 59.815 66.667 0.40 0.00 33.09 3.86
254 255 3.966026 CTCCGGGAGACGTCGTTGC 62.966 68.421 19.57 0.00 42.24 4.17
255 256 2.138656 AACTCCGGGAGACGTCGTTG 62.139 60.000 30.13 1.62 42.24 4.10
256 257 1.860484 GAACTCCGGGAGACGTCGTT 61.860 60.000 30.13 13.56 42.24 3.85
257 258 2.282040 AACTCCGGGAGACGTCGT 60.282 61.111 30.13 4.69 42.24 4.34
258 259 2.484203 GAACTCCGGGAGACGTCG 59.516 66.667 30.13 3.98 42.24 5.12
259 260 2.484203 CGAACTCCGGGAGACGTC 59.516 66.667 30.13 20.33 42.24 4.34
281 282 4.950974 CGACGTACGGGATCGCCG 62.951 72.222 21.06 17.75 40.63 6.46
295 296 3.969250 TTGAATCCCTGCCGCCGAC 62.969 63.158 0.00 0.00 0.00 4.79
296 297 3.261039 TTTGAATCCCTGCCGCCGA 62.261 57.895 0.00 0.00 0.00 5.54
297 298 2.749839 TTTGAATCCCTGCCGCCG 60.750 61.111 0.00 0.00 0.00 6.46
298 299 2.710902 GGTTTGAATCCCTGCCGCC 61.711 63.158 0.00 0.00 0.00 6.13
299 300 2.885113 GGTTTGAATCCCTGCCGC 59.115 61.111 0.00 0.00 0.00 6.53
300 301 3.051392 GCGGTTTGAATCCCTGCCG 62.051 63.158 0.00 0.00 41.79 5.69
301 302 2.710902 GGCGGTTTGAATCCCTGCC 61.711 63.158 0.00 0.00 34.79 4.85
302 303 2.710902 GGGCGGTTTGAATCCCTGC 61.711 63.158 0.00 0.00 35.87 4.85
303 304 1.000896 AGGGCGGTTTGAATCCCTG 60.001 57.895 0.00 0.00 46.80 4.45
304 305 3.508048 AGGGCGGTTTGAATCCCT 58.492 55.556 0.00 0.00 43.98 4.20
305 306 2.710902 GCAGGGCGGTTTGAATCCC 61.711 63.158 0.00 0.00 39.05 3.85
306 307 2.710902 GGCAGGGCGGTTTGAATCC 61.711 63.158 0.00 0.00 0.00 3.01
307 308 2.710902 GGGCAGGGCGGTTTGAATC 61.711 63.158 0.00 0.00 0.00 2.52
308 309 2.679996 GGGCAGGGCGGTTTGAAT 60.680 61.111 0.00 0.00 0.00 2.57
309 310 3.897122 AGGGCAGGGCGGTTTGAA 61.897 61.111 0.00 0.00 0.00 2.69
310 311 4.659172 CAGGGCAGGGCGGTTTGA 62.659 66.667 0.00 0.00 0.00 2.69
320 321 4.803426 GTCGCGTCTCCAGGGCAG 62.803 72.222 5.77 0.00 0.00 4.85
323 324 4.477975 GTCGTCGCGTCTCCAGGG 62.478 72.222 5.77 0.00 0.00 4.45
324 325 4.813526 CGTCGTCGCGTCTCCAGG 62.814 72.222 5.77 0.00 0.00 4.45
325 326 4.813526 CCGTCGTCGCGTCTCCAG 62.814 72.222 5.77 0.00 35.54 3.86
337 338 4.796231 CAAGGGGAGACGCCGTCG 62.796 72.222 12.13 0.00 46.15 5.12
338 339 4.452733 CCAAGGGGAGACGCCGTC 62.453 72.222 9.71 9.71 46.15 4.79
340 341 4.452733 GTCCAAGGGGAGACGCCG 62.453 72.222 0.00 0.00 46.12 6.46
344 345 4.452733 CGCCGTCCAAGGGGAGAC 62.453 72.222 0.00 0.00 46.12 3.36
364 365 2.888998 AAAGTCGTTCGTTGCCGCC 61.889 57.895 0.00 0.00 0.00 6.13
365 366 1.721133 CAAAGTCGTTCGTTGCCGC 60.721 57.895 0.00 0.00 0.00 6.53
366 367 0.854062 TACAAAGTCGTTCGTTGCCG 59.146 50.000 8.24 0.00 38.68 5.69
367 368 1.396316 CGTACAAAGTCGTTCGTTGCC 60.396 52.381 0.00 1.67 38.68 4.52
368 369 1.256117 ACGTACAAAGTCGTTCGTTGC 59.744 47.619 0.00 0.00 39.45 4.17
369 370 2.346924 CCACGTACAAAGTCGTTCGTTG 60.347 50.000 0.00 7.22 40.31 4.10
370 371 1.854126 CCACGTACAAAGTCGTTCGTT 59.146 47.619 0.00 0.00 40.31 3.85
371 372 1.480205 CCACGTACAAAGTCGTTCGT 58.520 50.000 0.00 0.00 42.57 3.85
372 373 0.780002 CCCACGTACAAAGTCGTTCG 59.220 55.000 0.00 0.00 38.23 3.95
373 374 0.509929 GCCCACGTACAAAGTCGTTC 59.490 55.000 0.00 0.00 38.23 3.95
374 375 0.881600 GGCCCACGTACAAAGTCGTT 60.882 55.000 0.00 0.00 38.23 3.85
375 376 1.301165 GGCCCACGTACAAAGTCGT 60.301 57.895 0.00 0.00 40.99 4.34
376 377 2.377310 CGGCCCACGTACAAAGTCG 61.377 63.158 0.00 0.00 37.93 4.18
377 378 2.674084 GCGGCCCACGTACAAAGTC 61.674 63.158 0.00 0.00 46.52 3.01
378 379 2.667199 GCGGCCCACGTACAAAGT 60.667 61.111 0.00 0.00 46.52 2.66
379 380 3.784412 CGCGGCCCACGTACAAAG 61.784 66.667 0.00 0.00 46.52 2.77
394 395 4.520846 CCGACGCTTCATTGCCGC 62.521 66.667 0.00 0.00 0.00 6.53
395 396 4.520846 GCCGACGCTTCATTGCCG 62.521 66.667 0.00 0.00 0.00 5.69
396 397 4.520846 CGCCGACGCTTCATTGCC 62.521 66.667 0.00 0.00 0.00 4.52
397 398 4.520846 CCGCCGACGCTTCATTGC 62.521 66.667 0.00 0.00 38.22 3.56
398 399 4.520846 GCCGCCGACGCTTCATTG 62.521 66.667 0.00 0.00 38.22 2.82
411 412 4.388499 TCTTCCGACCCTTGCCGC 62.388 66.667 0.00 0.00 0.00 6.53
412 413 2.125512 CTCTTCCGACCCTTGCCG 60.126 66.667 0.00 0.00 0.00 5.69
413 414 1.079057 GACTCTTCCGACCCTTGCC 60.079 63.158 0.00 0.00 0.00 4.52
414 415 1.446272 CGACTCTTCCGACCCTTGC 60.446 63.158 0.00 0.00 0.00 4.01
415 416 1.215647 CCGACTCTTCCGACCCTTG 59.784 63.158 0.00 0.00 0.00 3.61
416 417 2.647158 GCCGACTCTTCCGACCCTT 61.647 63.158 0.00 0.00 0.00 3.95
417 418 3.069318 GCCGACTCTTCCGACCCT 61.069 66.667 0.00 0.00 0.00 4.34
418 419 4.493747 CGCCGACTCTTCCGACCC 62.494 72.222 0.00 0.00 0.00 4.46
419 420 4.493747 CCGCCGACTCTTCCGACC 62.494 72.222 0.00 0.00 0.00 4.79
423 424 3.708220 CTCTGCCGCCGACTCTTCC 62.708 68.421 0.00 0.00 0.00 3.46
424 425 2.202676 CTCTGCCGCCGACTCTTC 60.203 66.667 0.00 0.00 0.00 2.87
425 426 2.676822 TCTCTGCCGCCGACTCTT 60.677 61.111 0.00 0.00 0.00 2.85
426 427 2.902423 ATCTCTCTGCCGCCGACTCT 62.902 60.000 0.00 0.00 0.00 3.24
427 428 2.400896 GATCTCTCTGCCGCCGACTC 62.401 65.000 0.00 0.00 0.00 3.36
428 429 2.441164 ATCTCTCTGCCGCCGACT 60.441 61.111 0.00 0.00 0.00 4.18
429 430 2.026879 GATCTCTCTGCCGCCGAC 59.973 66.667 0.00 0.00 0.00 4.79
430 431 2.935627 TACGATCTCTCTGCCGCCGA 62.936 60.000 0.00 0.00 0.00 5.54
431 432 2.450960 CTACGATCTCTCTGCCGCCG 62.451 65.000 0.00 0.00 0.00 6.46
432 433 1.167155 TCTACGATCTCTCTGCCGCC 61.167 60.000 0.00 0.00 0.00 6.13
433 434 0.878416 ATCTACGATCTCTCTGCCGC 59.122 55.000 0.00 0.00 0.00 6.53
434 435 1.127766 CGATCTACGATCTCTCTGCCG 59.872 57.143 0.00 0.00 45.77 5.69
435 436 1.135803 GCGATCTACGATCTCTCTGCC 60.136 57.143 0.00 0.00 45.77 4.85
436 437 1.463363 CGCGATCTACGATCTCTCTGC 60.463 57.143 0.00 0.00 45.77 4.26
437 438 1.127766 CCGCGATCTACGATCTCTCTG 59.872 57.143 8.23 0.00 45.77 3.35
438 439 1.434555 CCGCGATCTACGATCTCTCT 58.565 55.000 8.23 0.00 45.77 3.10
439 440 0.179210 GCCGCGATCTACGATCTCTC 60.179 60.000 8.23 0.00 45.77 3.20
440 441 0.885150 TGCCGCGATCTACGATCTCT 60.885 55.000 8.23 0.00 45.77 3.10
441 442 0.169230 ATGCCGCGATCTACGATCTC 59.831 55.000 8.23 0.00 45.77 2.75
442 443 0.169230 GATGCCGCGATCTACGATCT 59.831 55.000 8.23 0.00 45.77 2.75
443 444 1.128724 CGATGCCGCGATCTACGATC 61.129 60.000 8.23 0.00 45.77 3.69
444 445 1.154207 CGATGCCGCGATCTACGAT 60.154 57.895 8.23 0.00 45.77 3.73
445 446 1.778027 TTCGATGCCGCGATCTACGA 61.778 55.000 8.23 9.47 44.44 3.43
446 447 1.330779 CTTCGATGCCGCGATCTACG 61.331 60.000 8.23 7.02 40.35 3.51
447 448 1.004277 CCTTCGATGCCGCGATCTAC 61.004 60.000 8.23 0.00 40.35 2.59
448 449 1.170290 TCCTTCGATGCCGCGATCTA 61.170 55.000 8.23 0.00 40.35 1.98
449 450 2.028190 CCTTCGATGCCGCGATCT 59.972 61.111 8.23 0.00 40.35 2.75
450 451 2.018866 CTCCTTCGATGCCGCGATC 61.019 63.158 8.23 1.96 40.35 3.69
451 452 2.028190 CTCCTTCGATGCCGCGAT 59.972 61.111 8.23 0.00 40.35 4.58
452 453 4.207281 CCTCCTTCGATGCCGCGA 62.207 66.667 8.23 0.00 38.72 5.87
454 455 3.849951 TCCCTCCTTCGATGCCGC 61.850 66.667 0.00 0.00 35.37 6.53
455 456 1.961180 AAGTCCCTCCTTCGATGCCG 61.961 60.000 0.00 0.00 37.07 5.69
456 457 0.179070 GAAGTCCCTCCTTCGATGCC 60.179 60.000 0.00 0.00 32.23 4.40
457 458 3.371087 GAAGTCCCTCCTTCGATGC 57.629 57.895 0.00 0.00 32.23 3.91
469 470 0.394565 CATCCCAGGGATCGAAGTCC 59.605 60.000 19.44 0.00 40.98 3.85
470 471 0.394565 CCATCCCAGGGATCGAAGTC 59.605 60.000 19.44 0.00 40.98 3.01
471 472 2.532854 CCATCCCAGGGATCGAAGT 58.467 57.895 19.44 0.00 40.98 3.01
480 481 1.190833 CCTCTCGATCCCATCCCAGG 61.191 65.000 0.00 0.00 0.00 4.45
481 482 0.178950 TCCTCTCGATCCCATCCCAG 60.179 60.000 0.00 0.00 0.00 4.45
482 483 0.178950 CTCCTCTCGATCCCATCCCA 60.179 60.000 0.00 0.00 0.00 4.37
483 484 1.540435 GCTCCTCTCGATCCCATCCC 61.540 65.000 0.00 0.00 0.00 3.85
484 485 1.872197 CGCTCCTCTCGATCCCATCC 61.872 65.000 0.00 0.00 0.00 3.51
485 486 1.583986 CGCTCCTCTCGATCCCATC 59.416 63.158 0.00 0.00 0.00 3.51
486 487 1.905843 CCGCTCCTCTCGATCCCAT 60.906 63.158 0.00 0.00 0.00 4.00
487 488 2.359015 ATCCGCTCCTCTCGATCCCA 62.359 60.000 0.00 0.00 0.00 4.37
488 489 1.182385 AATCCGCTCCTCTCGATCCC 61.182 60.000 0.00 0.00 0.00 3.85
489 490 0.676736 AAATCCGCTCCTCTCGATCC 59.323 55.000 0.00 0.00 0.00 3.36
490 491 2.035321 AGAAAATCCGCTCCTCTCGATC 59.965 50.000 0.00 0.00 0.00 3.69
491 492 2.035632 AGAAAATCCGCTCCTCTCGAT 58.964 47.619 0.00 0.00 0.00 3.59
492 493 1.135139 CAGAAAATCCGCTCCTCTCGA 59.865 52.381 0.00 0.00 0.00 4.04
493 494 1.565305 CAGAAAATCCGCTCCTCTCG 58.435 55.000 0.00 0.00 0.00 4.04
494 495 1.294857 GCAGAAAATCCGCTCCTCTC 58.705 55.000 0.00 0.00 0.00 3.20
495 496 0.615331 TGCAGAAAATCCGCTCCTCT 59.385 50.000 0.00 0.00 0.00 3.69
496 497 1.012841 CTGCAGAAAATCCGCTCCTC 58.987 55.000 8.42 0.00 0.00 3.71
497 498 0.326264 ACTGCAGAAAATCCGCTCCT 59.674 50.000 23.35 0.00 0.00 3.69
498 499 0.449388 CACTGCAGAAAATCCGCTCC 59.551 55.000 23.35 0.00 0.00 4.70
499 500 1.442769 TCACTGCAGAAAATCCGCTC 58.557 50.000 23.35 0.00 0.00 5.03
500 501 1.741706 CATCACTGCAGAAAATCCGCT 59.258 47.619 23.35 0.00 0.00 5.52
501 502 1.202222 CCATCACTGCAGAAAATCCGC 60.202 52.381 23.35 0.00 0.00 5.54
502 503 2.353889 CTCCATCACTGCAGAAAATCCG 59.646 50.000 23.35 1.18 0.00 4.18
503 504 3.350833 ACTCCATCACTGCAGAAAATCC 58.649 45.455 23.35 0.00 0.00 3.01
504 505 5.382618 AAACTCCATCACTGCAGAAAATC 57.617 39.130 23.35 0.00 0.00 2.17
505 506 5.796424 AAAACTCCATCACTGCAGAAAAT 57.204 34.783 23.35 7.57 0.00 1.82
506 507 5.596836 AAAAACTCCATCACTGCAGAAAA 57.403 34.783 23.35 5.23 0.00 2.29
535 536 3.428282 CGCTGCCCCCGTACAAAC 61.428 66.667 0.00 0.00 0.00 2.93
536 537 4.708386 CCGCTGCCCCCGTACAAA 62.708 66.667 0.00 0.00 0.00 2.83
545 546 2.781595 TTTTCTCGTCTCCGCTGCCC 62.782 60.000 0.00 0.00 0.00 5.36
546 547 0.949105 TTTTTCTCGTCTCCGCTGCC 60.949 55.000 0.00 0.00 0.00 4.85
547 548 2.528797 TTTTTCTCGTCTCCGCTGC 58.471 52.632 0.00 0.00 0.00 5.25
574 575 8.987890 CGTCCCATCATTTTCTTTTGTTTTATT 58.012 29.630 0.00 0.00 0.00 1.40
575 576 8.364142 TCGTCCCATCATTTTCTTTTGTTTTAT 58.636 29.630 0.00 0.00 0.00 1.40
576 577 7.717568 TCGTCCCATCATTTTCTTTTGTTTTA 58.282 30.769 0.00 0.00 0.00 1.52
577 578 6.578023 TCGTCCCATCATTTTCTTTTGTTTT 58.422 32.000 0.00 0.00 0.00 2.43
578 579 6.155475 TCGTCCCATCATTTTCTTTTGTTT 57.845 33.333 0.00 0.00 0.00 2.83
579 580 5.782893 TCGTCCCATCATTTTCTTTTGTT 57.217 34.783 0.00 0.00 0.00 2.83
580 581 5.782893 TTCGTCCCATCATTTTCTTTTGT 57.217 34.783 0.00 0.00 0.00 2.83
581 582 7.656707 ATTTTCGTCCCATCATTTTCTTTTG 57.343 32.000 0.00 0.00 0.00 2.44
582 583 9.771534 TTTATTTTCGTCCCATCATTTTCTTTT 57.228 25.926 0.00 0.00 0.00 2.27
583 584 9.203421 GTTTATTTTCGTCCCATCATTTTCTTT 57.797 29.630 0.00 0.00 0.00 2.52
584 585 8.585018 AGTTTATTTTCGTCCCATCATTTTCTT 58.415 29.630 0.00 0.00 0.00 2.52
585 586 8.122472 AGTTTATTTTCGTCCCATCATTTTCT 57.878 30.769 0.00 0.00 0.00 2.52
587 588 9.801873 CATAGTTTATTTTCGTCCCATCATTTT 57.198 29.630 0.00 0.00 0.00 1.82
588 589 8.413229 CCATAGTTTATTTTCGTCCCATCATTT 58.587 33.333 0.00 0.00 0.00 2.32
589 590 7.777910 TCCATAGTTTATTTTCGTCCCATCATT 59.222 33.333 0.00 0.00 0.00 2.57
590 591 7.287061 TCCATAGTTTATTTTCGTCCCATCAT 58.713 34.615 0.00 0.00 0.00 2.45
591 592 6.654959 TCCATAGTTTATTTTCGTCCCATCA 58.345 36.000 0.00 0.00 0.00 3.07
592 593 7.745620 ATCCATAGTTTATTTTCGTCCCATC 57.254 36.000 0.00 0.00 0.00 3.51
593 594 8.437575 AGTATCCATAGTTTATTTTCGTCCCAT 58.562 33.333 0.00 0.00 0.00 4.00
594 595 7.798071 AGTATCCATAGTTTATTTTCGTCCCA 58.202 34.615 0.00 0.00 0.00 4.37
595 596 9.939802 ATAGTATCCATAGTTTATTTTCGTCCC 57.060 33.333 0.00 0.00 0.00 4.46
611 612 9.857656 ATGTTTGAGTTGATGAATAGTATCCAT 57.142 29.630 0.00 0.00 0.00 3.41
612 613 9.685276 AATGTTTGAGTTGATGAATAGTATCCA 57.315 29.630 0.00 0.00 0.00 3.41
653 654 9.639601 GCTTTAGCAAAACTATATTTTTCAGGT 57.360 29.630 0.00 0.00 41.59 4.00
690 691 3.133721 AGGACTCAGATGACTTATGGCAC 59.866 47.826 0.00 0.00 0.00 5.01
691 692 3.378512 AGGACTCAGATGACTTATGGCA 58.621 45.455 0.00 0.00 0.00 4.92
692 693 4.342378 TGTAGGACTCAGATGACTTATGGC 59.658 45.833 0.00 0.00 0.00 4.40
693 694 6.662865 ATGTAGGACTCAGATGACTTATGG 57.337 41.667 0.00 0.00 0.00 2.74
696 697 9.421399 TCAATAATGTAGGACTCAGATGACTTA 57.579 33.333 0.00 0.00 0.00 2.24
697 698 8.311395 TCAATAATGTAGGACTCAGATGACTT 57.689 34.615 0.00 0.00 0.00 3.01
698 699 7.904558 TCAATAATGTAGGACTCAGATGACT 57.095 36.000 0.00 0.00 0.00 3.41
699 700 8.584157 AGATCAATAATGTAGGACTCAGATGAC 58.416 37.037 0.00 0.00 0.00 3.06
700 701 8.718158 AGATCAATAATGTAGGACTCAGATGA 57.282 34.615 0.00 0.00 0.00 2.92
703 704 8.568794 CGTAAGATCAATAATGTAGGACTCAGA 58.431 37.037 0.00 0.00 43.02 3.27
704 705 7.327275 GCGTAAGATCAATAATGTAGGACTCAG 59.673 40.741 0.00 0.00 43.02 3.35
705 706 7.145985 GCGTAAGATCAATAATGTAGGACTCA 58.854 38.462 0.00 0.00 43.02 3.41
706 707 6.305877 CGCGTAAGATCAATAATGTAGGACTC 59.694 42.308 0.00 0.00 43.02 3.36
707 708 6.150318 CGCGTAAGATCAATAATGTAGGACT 58.850 40.000 0.00 0.00 43.02 3.85
708 709 5.345202 CCGCGTAAGATCAATAATGTAGGAC 59.655 44.000 4.92 0.00 43.02 3.85
709 710 5.242171 TCCGCGTAAGATCAATAATGTAGGA 59.758 40.000 4.92 0.00 43.02 2.94
710 711 5.466819 TCCGCGTAAGATCAATAATGTAGG 58.533 41.667 4.92 0.00 43.02 3.18
711 712 6.379386 TCTCCGCGTAAGATCAATAATGTAG 58.621 40.000 4.92 0.00 43.02 2.74
712 713 6.321848 TCTCCGCGTAAGATCAATAATGTA 57.678 37.500 4.92 0.00 43.02 2.29
713 714 5.196341 TCTCCGCGTAAGATCAATAATGT 57.804 39.130 4.92 0.00 43.02 2.71
714 715 6.712241 AATCTCCGCGTAAGATCAATAATG 57.288 37.500 18.20 0.00 43.02 1.90
715 716 6.706270 ACAAATCTCCGCGTAAGATCAATAAT 59.294 34.615 18.20 3.06 43.02 1.28
716 717 6.019075 CACAAATCTCCGCGTAAGATCAATAA 60.019 38.462 18.20 0.00 43.02 1.40
717 718 5.462068 CACAAATCTCCGCGTAAGATCAATA 59.538 40.000 18.20 0.00 43.02 1.90
718 719 4.271049 CACAAATCTCCGCGTAAGATCAAT 59.729 41.667 18.20 8.15 43.02 2.57
719 720 3.616821 CACAAATCTCCGCGTAAGATCAA 59.383 43.478 18.20 0.00 43.02 2.57
720 721 3.186909 CACAAATCTCCGCGTAAGATCA 58.813 45.455 18.20 0.00 43.02 2.92
721 722 3.000322 CACACAAATCTCCGCGTAAGATC 60.000 47.826 18.20 0.00 43.02 2.75
722 723 2.930040 CACACAAATCTCCGCGTAAGAT 59.070 45.455 13.69 13.69 43.02 2.40
723 724 2.029739 TCACACAAATCTCCGCGTAAGA 60.030 45.455 4.92 8.24 43.02 2.10
724 725 2.333926 TCACACAAATCTCCGCGTAAG 58.666 47.619 4.92 1.81 43.44 2.34
725 726 2.029739 TCTCACACAAATCTCCGCGTAA 60.030 45.455 4.92 0.00 0.00 3.18
726 727 1.542472 TCTCACACAAATCTCCGCGTA 59.458 47.619 4.92 0.00 0.00 4.42
727 728 0.317160 TCTCACACAAATCTCCGCGT 59.683 50.000 4.92 0.00 0.00 6.01
728 729 1.428448 TTCTCACACAAATCTCCGCG 58.572 50.000 0.00 0.00 0.00 6.46
729 730 4.425577 AAATTCTCACACAAATCTCCGC 57.574 40.909 0.00 0.00 0.00 5.54
730 731 6.246420 AGAAAATTCTCACACAAATCTCCG 57.754 37.500 0.00 0.00 29.94 4.63
731 732 8.877808 AAAAGAAAATTCTCACACAAATCTCC 57.122 30.769 0.00 0.00 36.28 3.71
732 733 9.741647 AGAAAAGAAAATTCTCACACAAATCTC 57.258 29.630 0.00 0.00 36.28 2.75
768 769 7.075741 GTCTAAGCGACTTAATCAAGCAAAAA 58.924 34.615 0.00 0.00 39.61 1.94
769 770 6.203915 TGTCTAAGCGACTTAATCAAGCAAAA 59.796 34.615 0.00 0.00 43.25 2.44
770 771 5.699001 TGTCTAAGCGACTTAATCAAGCAAA 59.301 36.000 0.00 0.00 43.25 3.68
771 772 5.234752 TGTCTAAGCGACTTAATCAAGCAA 58.765 37.500 0.00 0.00 43.25 3.91
772 773 4.816392 TGTCTAAGCGACTTAATCAAGCA 58.184 39.130 0.00 0.00 43.25 3.91
773 774 5.732288 CATGTCTAAGCGACTTAATCAAGC 58.268 41.667 0.00 0.00 43.25 4.01
774 775 5.521735 AGCATGTCTAAGCGACTTAATCAAG 59.478 40.000 0.00 0.00 43.25 3.02
775 776 5.291858 CAGCATGTCTAAGCGACTTAATCAA 59.708 40.000 0.00 0.00 43.25 2.57
776 777 4.805719 CAGCATGTCTAAGCGACTTAATCA 59.194 41.667 0.00 0.00 43.25 2.57
777 778 4.210120 CCAGCATGTCTAAGCGACTTAATC 59.790 45.833 0.00 0.00 43.25 1.75
778 779 4.122776 CCAGCATGTCTAAGCGACTTAAT 58.877 43.478 0.00 0.00 43.25 1.40
779 780 3.521560 CCAGCATGTCTAAGCGACTTAA 58.478 45.455 0.00 0.00 43.25 1.85
780 781 2.738643 GCCAGCATGTCTAAGCGACTTA 60.739 50.000 0.00 0.00 43.25 2.24
781 782 2.009042 GCCAGCATGTCTAAGCGACTT 61.009 52.381 0.00 0.00 43.25 3.01
782 783 0.460987 GCCAGCATGTCTAAGCGACT 60.461 55.000 0.00 0.00 43.25 4.18
783 784 1.756375 CGCCAGCATGTCTAAGCGAC 61.756 60.000 19.48 0.00 44.69 5.19
784 785 1.519234 CGCCAGCATGTCTAAGCGA 60.519 57.895 19.48 0.00 44.69 4.93
785 786 0.527600 TACGCCAGCATGTCTAAGCG 60.528 55.000 21.10 21.10 46.24 4.68
786 787 1.202417 TCTACGCCAGCATGTCTAAGC 60.202 52.381 0.00 0.00 0.00 3.09
787 788 2.871182 TCTACGCCAGCATGTCTAAG 57.129 50.000 0.00 0.00 0.00 2.18
788 789 3.603158 TTTCTACGCCAGCATGTCTAA 57.397 42.857 0.00 0.00 0.00 2.10
789 790 3.603158 TTTTCTACGCCAGCATGTCTA 57.397 42.857 0.00 0.00 0.00 2.59
790 791 2.472695 TTTTCTACGCCAGCATGTCT 57.527 45.000 0.00 0.00 0.00 3.41
812 813 9.192642 GGGTGTGGTAATTAGGTTGTTTATATT 57.807 33.333 0.00 0.00 0.00 1.28
813 814 8.562635 AGGGTGTGGTAATTAGGTTGTTTATAT 58.437 33.333 0.00 0.00 0.00 0.86
814 815 7.931046 AGGGTGTGGTAATTAGGTTGTTTATA 58.069 34.615 0.00 0.00 0.00 0.98
951 971 0.107508 ATCCCTAGACGACGACGGAA 60.108 55.000 12.58 0.00 44.46 4.30
979 999 1.459455 ATCATCCTCACCGCTCTCCG 61.459 60.000 0.00 0.00 0.00 4.63
992 1012 2.320587 GCCCGCGTCATCATCATCC 61.321 63.158 4.92 0.00 0.00 3.51
1274 1294 1.599606 TACGGCCCAAATGCGCAAAT 61.600 50.000 17.11 2.99 0.00 2.32
1311 1333 9.244799 GGAAAAATCGAACATAAATAATCCACC 57.755 33.333 0.00 0.00 0.00 4.61
1312 1334 9.244799 GGGAAAAATCGAACATAAATAATCCAC 57.755 33.333 0.00 0.00 0.00 4.02
1488 3403 1.443194 CACGCTGCAAGAACATGGC 60.443 57.895 0.00 0.00 34.07 4.40
1490 3405 0.110056 GACCACGCTGCAAGAACATG 60.110 55.000 0.00 0.00 34.07 3.21
1491 3406 0.534877 TGACCACGCTGCAAGAACAT 60.535 50.000 0.00 0.00 34.07 2.71
1531 3446 3.887621 TCAAGTGTACCCATAGAGCAC 57.112 47.619 0.00 0.00 0.00 4.40
1639 3557 6.939622 TGTCTACCTTTACCTACCTTTTAGC 58.060 40.000 0.00 0.00 0.00 3.09
1707 3625 6.827251 TCTCGGTCAAGTCTTGTGTACTATAT 59.173 38.462 12.30 0.00 0.00 0.86
1708 3626 6.175471 TCTCGGTCAAGTCTTGTGTACTATA 58.825 40.000 12.30 0.00 0.00 1.31
1821 3739 9.621239 TCTACCCTTCTATCAATGGAAAGATAT 57.379 33.333 0.00 0.00 0.00 1.63
1947 3865 7.487509 CACATAACAAACACAGTCATCAAACAA 59.512 33.333 0.00 0.00 0.00 2.83
1955 3873 5.429130 TGGTACACATAACAAACACAGTCA 58.571 37.500 0.00 0.00 0.00 3.41
1976 3894 7.894376 ATGCAAATTCTTGAAATAGTTGTGG 57.106 32.000 0.00 0.00 34.14 4.17
2290 4209 9.372369 CTACTTGTACTTCCTAAAGATGGAAAG 57.628 37.037 0.00 0.00 42.29 2.62
2481 4400 7.292356 ACAAACTGACCATGGATATCACCTATA 59.708 37.037 21.47 0.00 0.00 1.31
2482 4401 6.101734 ACAAACTGACCATGGATATCACCTAT 59.898 38.462 21.47 0.00 0.00 2.57
2541 4460 4.473477 AAGATAAGTCGAAGTTGGAGGG 57.527 45.455 0.00 0.00 0.00 4.30
3100 5019 3.603532 TGAGGACATTCATGCTTCAGTC 58.396 45.455 0.00 0.00 0.00 3.51
3380 5318 2.880890 ACAAGAACAACTCACTGATGGC 59.119 45.455 0.00 0.00 0.00 4.40
3381 5319 5.066375 TCAAACAAGAACAACTCACTGATGG 59.934 40.000 0.00 0.00 0.00 3.51
3394 5332 9.515020 TTCATGAATTGTAGTTCAAACAAGAAC 57.485 29.630 3.38 0.00 46.35 3.01
3494 5432 1.737793 GGTCGTTGGATTGACATGGTC 59.262 52.381 0.00 0.00 36.83 4.02
3624 5562 9.912634 AATATTAGGATGGAAATTAATTGCACG 57.087 29.630 8.47 0.00 42.55 5.34
3640 5578 5.183140 GTGCAATGCCCGTTAATATTAGGAT 59.817 40.000 1.53 0.00 0.00 3.24
3711 5649 0.316689 CAAAAGAAAACTCGCGCGGT 60.317 50.000 31.69 23.24 0.00 5.68
3867 5808 3.994392 GTGTGTACGTGTGGAATTCATCT 59.006 43.478 7.93 0.00 0.00 2.90
3930 5871 4.002982 CAGCTGCTGTAAAATCCACAGTA 58.997 43.478 21.21 0.00 44.30 2.74
3965 5906 6.212187 TGCTCTGGAGATGTACTGCATTATAT 59.788 38.462 1.35 0.00 45.30 0.86
3966 5907 5.539955 TGCTCTGGAGATGTACTGCATTATA 59.460 40.000 1.35 0.00 45.30 0.98
3967 5908 4.346127 TGCTCTGGAGATGTACTGCATTAT 59.654 41.667 1.35 0.00 45.30 1.28
3971 5912 1.560505 TGCTCTGGAGATGTACTGCA 58.439 50.000 1.35 0.00 44.32 4.41
4043 5984 9.971922 GGATGATCCACCAAAGAATAATAAAAG 57.028 33.333 6.60 0.00 36.28 2.27
4079 6020 7.493645 TGAACATGTTGATGATACATCAGAGTC 59.506 37.037 17.58 0.00 40.64 3.36
4153 6094 1.895798 TCCAGTTCGTCTGAAGCTCAT 59.104 47.619 10.79 0.00 46.27 2.90
4154 6095 1.328279 TCCAGTTCGTCTGAAGCTCA 58.672 50.000 10.79 0.00 46.27 4.26
4155 6096 2.440539 TTCCAGTTCGTCTGAAGCTC 57.559 50.000 10.79 0.00 46.27 4.09
4156 6097 2.910688 TTTCCAGTTCGTCTGAAGCT 57.089 45.000 10.79 0.00 46.27 3.74
4248 6189 1.817099 CGCCATGAGCTCCCTGAAC 60.817 63.158 12.15 4.16 40.39 3.18
4333 6274 5.344743 TGGTGCATTTTGTGGTTCTAAAA 57.655 34.783 0.00 0.00 0.00 1.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.