Multiple sequence alignment - TraesCS3B01G225700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G225700 chr3B 100.000 3605 0 0 1 3605 311763924 311760320 0.000000e+00 6658.0
1 TraesCS3B01G225700 chr3B 95.976 994 27 4 2623 3603 522244820 522243827 0.000000e+00 1602.0
2 TraesCS3B01G225700 chr3B 85.766 1110 147 10 1508 2610 548132481 548133586 0.000000e+00 1164.0
3 TraesCS3B01G225700 chr3B 90.327 703 56 4 2622 3313 178453880 178453179 0.000000e+00 911.0
4 TraesCS3B01G225700 chr3B 89.928 695 47 5 2623 3306 316753331 316752649 0.000000e+00 874.0
5 TraesCS3B01G225700 chr3B 85.837 699 40 7 2623 3310 595995485 595994835 0.000000e+00 688.0
6 TraesCS3B01G225700 chr3B 98.540 274 4 0 812 1085 522249327 522249054 5.410000e-133 484.0
7 TraesCS3B01G225700 chr3B 97.788 226 5 0 2397 2622 16835287 16835062 1.210000e-104 390.0
8 TraesCS3B01G225700 chr3B 93.578 218 14 0 242 459 327793861 327794078 3.470000e-85 326.0
9 TraesCS3B01G225700 chr3B 93.229 192 10 2 1 192 74020831 74021019 2.740000e-71 279.0
10 TraesCS3B01G225700 chr3B 96.522 115 4 0 835 949 522245087 522244973 1.320000e-44 191.0
11 TraesCS3B01G225700 chr3B 94.783 115 6 0 835 949 178454145 178454031 2.860000e-41 180.0
12 TraesCS3B01G225700 chr2D 96.869 1118 32 3 1506 2622 487313216 487314331 0.000000e+00 1868.0
13 TraesCS3B01G225700 chr2D 92.235 425 33 0 1086 1510 487290129 487289705 1.430000e-168 603.0
14 TraesCS3B01G225700 chr2D 96.000 225 9 0 2398 2622 487288879 487289103 2.050000e-97 366.0
15 TraesCS3B01G225700 chr2D 98.182 55 0 1 764 817 295570721 295570667 1.070000e-15 95.3
16 TraesCS3B01G225700 chr4A 94.544 1118 39 2 1506 2622 635527114 635526018 0.000000e+00 1707.0
17 TraesCS3B01G225700 chr4A 90.857 700 52 4 2622 3310 694926216 694925518 0.000000e+00 928.0
18 TraesCS3B01G225700 chr4A 83.429 694 110 5 1508 2199 716767423 716766733 1.090000e-179 640.0
19 TraesCS3B01G225700 chr4A 93.436 259 17 0 1087 1345 635529851 635530109 5.650000e-103 385.0
20 TraesCS3B01G225700 chr4A 83.493 418 58 8 2201 2610 716749001 716748587 2.630000e-101 379.0
21 TraesCS3B01G225700 chr4A 96.000 225 8 1 2398 2622 635531045 635530822 7.360000e-97 364.0
22 TraesCS3B01G225700 chr4A 84.859 284 41 1 1939 2220 716666515 716666232 5.890000e-73 285.0
23 TraesCS3B01G225700 chr4A 73.391 575 135 16 1840 2405 309201721 309201156 7.900000e-47 198.0
24 TraesCS3B01G225700 chr4A 97.414 116 3 0 1395 1510 635530114 635530229 7.900000e-47 198.0
25 TraesCS3B01G225700 chr5B 94.461 993 39 7 2623 3603 76535618 76534630 0.000000e+00 1515.0
26 TraesCS3B01G225700 chr5B 95.874 824 26 5 1 820 210333204 210334023 0.000000e+00 1327.0
27 TraesCS3B01G225700 chr5B 93.913 115 7 0 835 949 76535885 76535771 1.330000e-39 174.0
28 TraesCS3B01G225700 chr5B 96.341 82 3 0 1004 1085 76544292 76544211 6.280000e-28 135.0
29 TraesCS3B01G225700 chr5B 73.228 254 56 9 1919 2166 338653438 338653685 8.300000e-12 82.4
30 TraesCS3B01G225700 chr1A 94.775 823 33 6 1 817 19703279 19704097 0.000000e+00 1273.0
31 TraesCS3B01G225700 chr1A 92.746 193 10 3 1 192 108380751 108380940 3.550000e-70 276.0
32 TraesCS3B01G225700 chr2B 85.601 1132 151 11 1508 2631 110962414 110963541 0.000000e+00 1177.0
33 TraesCS3B01G225700 chr2B 91.571 700 46 5 2622 3310 228585803 228585106 0.000000e+00 953.0
34 TraesCS3B01G225700 chr2B 95.254 295 13 1 191 484 427753746 427754040 1.960000e-127 466.0
35 TraesCS3B01G225700 chr2B 87.705 244 22 5 2623 2858 427757504 427757747 9.860000e-71 278.0
36 TraesCS3B01G225700 chr4B 85.676 1124 147 13 1508 2622 662472881 662471763 0.000000e+00 1171.0
37 TraesCS3B01G225700 chr4B 95.652 207 8 1 835 1041 307977770 307977565 7.460000e-87 331.0
38 TraesCS3B01G225700 chr7A 85.587 1124 150 11 1508 2623 697098692 697099811 0.000000e+00 1168.0
39 TraesCS3B01G225700 chr7D 93.000 700 35 6 2623 3310 418727278 418726581 0.000000e+00 1009.0
40 TraesCS3B01G225700 chr7D 94.163 257 14 1 829 1085 262131890 262132145 1.210000e-104 390.0
41 TraesCS3B01G225700 chr7D 95.652 115 4 1 835 949 418727544 418727431 2.210000e-42 183.0
42 TraesCS3B01G225700 chr6B 97.279 588 15 1 231 817 257291497 257290910 0.000000e+00 996.0
43 TraesCS3B01G225700 chr6B 83.714 700 92 12 2623 3309 4838699 4838009 3.030000e-180 641.0
44 TraesCS3B01G225700 chr6B 94.667 300 16 0 191 490 311475614 311475913 1.960000e-127 466.0
45 TraesCS3B01G225700 chr6B 97.021 235 4 1 1 235 257300012 257299781 3.370000e-105 392.0
46 TraesCS3B01G225700 chr6B 94.211 190 8 1 1 190 4736188 4736374 1.640000e-73 287.0
47 TraesCS3B01G225700 chr6B 93.684 190 9 1 1 190 4739189 4739375 7.620000e-72 281.0
48 TraesCS3B01G225700 chr3D 90.244 492 46 2 2783 3272 220377016 220377507 3.030000e-180 641.0
49 TraesCS3B01G225700 chr3D 94.388 196 7 2 1 195 562966092 562965900 7.570000e-77 298.0
50 TraesCS3B01G225700 chr7B 94.667 300 16 0 191 490 235122598 235122299 1.960000e-127 466.0
51 TraesCS3B01G225700 chrUn 92.333 300 23 0 191 490 117169165 117169464 9.250000e-116 427.0
52 TraesCS3B01G225700 chr1B 96.414 251 9 0 835 1085 303879516 303879266 7.200000e-112 414.0
53 TraesCS3B01G225700 chr1B 94.821 251 13 0 835 1085 303881092 303880842 3.370000e-105 392.0
54 TraesCS3B01G225700 chr1B 92.821 195 11 1 1 195 295052016 295051825 2.740000e-71 279.0
55 TraesCS3B01G225700 chr5D 89.873 237 18 5 252 485 317669067 317668834 2.100000e-77 300.0
56 TraesCS3B01G225700 chr1D 88.755 249 16 3 2623 2859 481610137 481610385 9.790000e-76 294.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G225700 chr3B 311760320 311763924 3604 True 6658.0 6658 100.000000 1 3605 1 chr3B.!!$R2 3604
1 TraesCS3B01G225700 chr3B 548132481 548133586 1105 False 1164.0 1164 85.766000 1508 2610 1 chr3B.!!$F3 1102
2 TraesCS3B01G225700 chr3B 316752649 316753331 682 True 874.0 874 89.928000 2623 3306 1 chr3B.!!$R3 683
3 TraesCS3B01G225700 chr3B 522243827 522249327 5500 True 759.0 1602 97.012667 812 3603 3 chr3B.!!$R6 2791
4 TraesCS3B01G225700 chr3B 595994835 595995485 650 True 688.0 688 85.837000 2623 3310 1 chr3B.!!$R4 687
5 TraesCS3B01G225700 chr3B 178453179 178454145 966 True 545.5 911 92.555000 835 3313 2 chr3B.!!$R5 2478
6 TraesCS3B01G225700 chr2D 487313216 487314331 1115 False 1868.0 1868 96.869000 1506 2622 1 chr2D.!!$F2 1116
7 TraesCS3B01G225700 chr4A 635526018 635531045 5027 True 1035.5 1707 95.272000 1506 2622 2 chr4A.!!$R6 1116
8 TraesCS3B01G225700 chr4A 694925518 694926216 698 True 928.0 928 90.857000 2622 3310 1 chr4A.!!$R2 688
9 TraesCS3B01G225700 chr4A 716766733 716767423 690 True 640.0 640 83.429000 1508 2199 1 chr4A.!!$R5 691
10 TraesCS3B01G225700 chr5B 210333204 210334023 819 False 1327.0 1327 95.874000 1 820 1 chr5B.!!$F1 819
11 TraesCS3B01G225700 chr5B 76534630 76535885 1255 True 844.5 1515 94.187000 835 3603 2 chr5B.!!$R2 2768
12 TraesCS3B01G225700 chr1A 19703279 19704097 818 False 1273.0 1273 94.775000 1 817 1 chr1A.!!$F1 816
13 TraesCS3B01G225700 chr2B 110962414 110963541 1127 False 1177.0 1177 85.601000 1508 2631 1 chr2B.!!$F1 1123
14 TraesCS3B01G225700 chr2B 228585106 228585803 697 True 953.0 953 91.571000 2622 3310 1 chr2B.!!$R1 688
15 TraesCS3B01G225700 chr2B 427753746 427757747 4001 False 372.0 466 91.479500 191 2858 2 chr2B.!!$F2 2667
16 TraesCS3B01G225700 chr4B 662471763 662472881 1118 True 1171.0 1171 85.676000 1508 2622 1 chr4B.!!$R2 1114
17 TraesCS3B01G225700 chr7A 697098692 697099811 1119 False 1168.0 1168 85.587000 1508 2623 1 chr7A.!!$F1 1115
18 TraesCS3B01G225700 chr7D 418726581 418727544 963 True 596.0 1009 94.326000 835 3310 2 chr7D.!!$R1 2475
19 TraesCS3B01G225700 chr6B 257290910 257291497 587 True 996.0 996 97.279000 231 817 1 chr6B.!!$R2 586
20 TraesCS3B01G225700 chr6B 4838009 4838699 690 True 641.0 641 83.714000 2623 3309 1 chr6B.!!$R1 686
21 TraesCS3B01G225700 chr6B 4736188 4739375 3187 False 284.0 287 93.947500 1 190 2 chr6B.!!$F2 189
22 TraesCS3B01G225700 chr1B 303879266 303881092 1826 True 403.0 414 95.617500 835 1085 2 chr1B.!!$R2 250

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
960 10905 1.20258 ACTTTTCTCTGTCGCTGCAGT 60.203 47.619 16.64 0.0 37.7 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2768 15221 0.904865 ATGGTGGAAGAGCTCGTGGA 60.905 55.0 6.97 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 2.840038 TCCTGTACAGTTCTGCCATGAT 59.160 45.455 21.18 0.00 0.00 2.45
68 69 2.941064 CCTGTACAGTTCTGCCATGATG 59.059 50.000 21.18 0.00 0.00 3.07
69 70 3.369787 CCTGTACAGTTCTGCCATGATGA 60.370 47.826 21.18 0.00 0.00 2.92
322 1886 8.089597 TGAATAAAATGTGTCATGCAAGTTCAT 58.910 29.630 0.00 0.00 0.00 2.57
486 2405 7.332430 TGTGTGTATTGTAAGTGTAATAGTGCC 59.668 37.037 0.00 0.00 0.00 5.01
550 3232 4.021192 AGCATGTATTCTGGTGTTTTTGGG 60.021 41.667 0.00 0.00 0.00 4.12
960 10905 1.202580 ACTTTTCTCTGTCGCTGCAGT 60.203 47.619 16.64 0.00 37.70 4.40
991 10936 2.042639 ATTGCCACCATCCTGGGC 60.043 61.111 0.00 0.00 43.37 5.36
1028 10973 4.028490 AAGCCGTTCGATGCCCCA 62.028 61.111 0.00 0.00 0.00 4.96
1059 11004 2.359975 CCGTCACAGCTTTCCCCC 60.360 66.667 0.00 0.00 0.00 5.40
1081 11026 3.289836 CACCTCCCATTGCATGTTCATA 58.710 45.455 0.00 0.00 0.00 2.15
1086 11031 2.287188 CCCATTGCATGTTCATACTCGC 60.287 50.000 0.00 0.00 0.00 5.03
1087 11032 2.287188 CCATTGCATGTTCATACTCGCC 60.287 50.000 0.00 0.00 0.00 5.54
1088 11033 2.401583 TTGCATGTTCATACTCGCCT 57.598 45.000 0.00 0.00 0.00 5.52
1090 11035 2.279741 TGCATGTTCATACTCGCCTTC 58.720 47.619 0.00 0.00 0.00 3.46
1092 11037 2.213499 CATGTTCATACTCGCCTTCCC 58.787 52.381 0.00 0.00 0.00 3.97
1093 11038 0.539986 TGTTCATACTCGCCTTCCCC 59.460 55.000 0.00 0.00 0.00 4.81
1094 11039 0.831307 GTTCATACTCGCCTTCCCCT 59.169 55.000 0.00 0.00 0.00 4.79
1096 11041 1.580059 TCATACTCGCCTTCCCCTTT 58.420 50.000 0.00 0.00 0.00 3.11
1097 11042 1.913419 TCATACTCGCCTTCCCCTTTT 59.087 47.619 0.00 0.00 0.00 2.27
1099 11044 0.616891 TACTCGCCTTCCCCTTTTCC 59.383 55.000 0.00 0.00 0.00 3.13
1100 11045 1.745489 CTCGCCTTCCCCTTTTCCG 60.745 63.158 0.00 0.00 0.00 4.30
1101 11046 3.440415 CGCCTTCCCCTTTTCCGC 61.440 66.667 0.00 0.00 0.00 5.54
1102 11047 3.068691 GCCTTCCCCTTTTCCGCC 61.069 66.667 0.00 0.00 0.00 6.13
1103 11048 2.763902 CCTTCCCCTTTTCCGCCT 59.236 61.111 0.00 0.00 0.00 5.52
1104 11049 1.678970 CCTTCCCCTTTTCCGCCTG 60.679 63.158 0.00 0.00 0.00 4.85
1105 11050 1.678970 CTTCCCCTTTTCCGCCTGG 60.679 63.158 0.00 0.00 0.00 4.45
1107 11052 2.014033 TTCCCCTTTTCCGCCTGGTT 62.014 55.000 0.00 0.00 36.30 3.67
1109 11054 2.650778 CCTTTTCCGCCTGGTTGC 59.349 61.111 0.00 0.00 36.30 4.17
1110 11055 2.650778 CTTTTCCGCCTGGTTGCC 59.349 61.111 0.00 0.00 36.30 4.52
1111 11056 3.267597 CTTTTCCGCCTGGTTGCCG 62.268 63.158 0.00 0.00 36.30 5.69
1134 11079 4.796231 GGTGCGATCGCCACGAGT 62.796 66.667 35.12 0.00 42.42 4.18
1135 11080 2.101575 GTGCGATCGCCACGAGTA 59.898 61.111 35.12 13.83 39.91 2.59
1136 11081 2.101575 TGCGATCGCCACGAGTAC 59.898 61.111 35.12 7.13 39.91 2.73
1138 11083 2.352001 CGATCGCCACGAGTACCG 60.352 66.667 0.26 2.71 39.91 4.02
1140 11085 4.203076 ATCGCCACGAGTACCGCC 62.203 66.667 0.00 0.00 43.32 6.13
1179 11124 4.899239 GGCGTGGCCGATGGAGAG 62.899 72.222 0.00 0.00 39.62 3.20
1188 11133 3.838271 GATGGAGAGCGCGGTGGA 61.838 66.667 18.92 0.00 0.00 4.02
1189 11134 3.781770 GATGGAGAGCGCGGTGGAG 62.782 68.421 18.92 0.00 0.00 3.86
1229 11174 3.832171 GAGCGTGCTCGTTCTGCG 61.832 66.667 16.29 0.00 42.42 5.18
1230 11175 4.647615 AGCGTGCTCGTTCTGCGT 62.648 61.111 10.18 0.00 42.13 5.24
1231 11176 4.415501 GCGTGCTCGTTCTGCGTG 62.416 66.667 10.18 0.00 42.13 5.34
1232 11177 2.729491 CGTGCTCGTTCTGCGTGA 60.729 61.111 0.00 0.00 42.13 4.35
1233 11178 2.088763 CGTGCTCGTTCTGCGTGAT 61.089 57.895 0.00 0.00 42.13 3.06
1234 11179 1.704582 GTGCTCGTTCTGCGTGATC 59.295 57.895 0.00 0.00 42.13 2.92
1237 11182 1.142778 GCTCGTTCTGCGTGATCTCC 61.143 60.000 0.00 0.00 42.13 3.71
1238 11183 0.453793 CTCGTTCTGCGTGATCTCCT 59.546 55.000 0.00 0.00 42.13 3.69
1240 11185 0.171231 CGTTCTGCGTGATCTCCTCA 59.829 55.000 0.00 0.00 35.54 3.86
1241 11186 1.402852 CGTTCTGCGTGATCTCCTCAA 60.403 52.381 0.00 0.00 35.07 3.02
1242 11187 2.266554 GTTCTGCGTGATCTCCTCAAG 58.733 52.381 0.00 0.00 35.07 3.02
1243 11188 0.820226 TCTGCGTGATCTCCTCAAGG 59.180 55.000 0.00 0.00 35.07 3.61
1244 11189 0.820226 CTGCGTGATCTCCTCAAGGA 59.180 55.000 0.00 0.00 43.08 3.36
1254 11199 3.592070 CTCAAGGAGGAGACGCGA 58.408 61.111 15.93 0.00 37.05 5.87
1255 11200 1.137825 CTCAAGGAGGAGACGCGAC 59.862 63.158 15.93 6.86 37.05 5.19
1257 11202 3.441290 AAGGAGGAGACGCGACCG 61.441 66.667 15.93 0.00 41.14 4.79
1278 11223 4.323477 CTGGGCGAACGTGGGGAA 62.323 66.667 0.00 0.00 0.00 3.97
1279 11224 4.629523 TGGGCGAACGTGGGGAAC 62.630 66.667 0.00 0.00 0.00 3.62
1299 11244 4.729918 CACCTGCAGGGGGAGCAC 62.730 72.222 35.42 0.00 42.32 4.40
1313 11258 3.726517 GCACCGTTGCGAGCACAT 61.727 61.111 0.00 0.00 39.50 3.21
1314 11259 2.174107 CACCGTTGCGAGCACATG 59.826 61.111 0.00 0.00 0.00 3.21
1315 11260 3.726517 ACCGTTGCGAGCACATGC 61.727 61.111 0.00 0.00 42.49 4.06
1319 11264 2.644418 TTGCGAGCACATGCAACC 59.356 55.556 6.64 0.00 45.45 3.77
1320 11265 3.252665 TTGCGAGCACATGCAACCG 62.253 57.895 6.64 7.66 45.45 4.44
1322 11267 4.465512 CGAGCACATGCAACCGCC 62.466 66.667 6.64 0.00 45.16 6.13
1323 11268 3.364441 GAGCACATGCAACCGCCA 61.364 61.111 6.64 0.00 45.16 5.69
1324 11269 3.332493 GAGCACATGCAACCGCCAG 62.332 63.158 6.64 0.00 45.16 4.85
1326 11271 3.367743 CACATGCAACCGCCAGCT 61.368 61.111 0.00 0.00 37.32 4.24
1327 11272 3.367743 ACATGCAACCGCCAGCTG 61.368 61.111 6.78 6.78 37.32 4.24
1328 11273 3.057548 CATGCAACCGCCAGCTGA 61.058 61.111 17.39 0.00 37.32 4.26
1329 11274 2.749044 ATGCAACCGCCAGCTGAG 60.749 61.111 17.39 8.81 37.32 3.35
1330 11275 3.258228 ATGCAACCGCCAGCTGAGA 62.258 57.895 17.39 0.00 37.32 3.27
1333 11278 4.379243 AACCGCCAGCTGAGACCG 62.379 66.667 17.39 11.76 0.00 4.79
1337 11282 3.695606 GCCAGCTGAGACCGTGGA 61.696 66.667 17.39 0.00 31.04 4.02
1341 11286 0.247460 CAGCTGAGACCGTGGATGAA 59.753 55.000 8.42 0.00 0.00 2.57
1342 11287 0.247736 AGCTGAGACCGTGGATGAAC 59.752 55.000 0.00 0.00 0.00 3.18
1344 11289 2.001812 CTGAGACCGTGGATGAACTG 57.998 55.000 0.00 0.00 0.00 3.16
1345 11290 0.608130 TGAGACCGTGGATGAACTGG 59.392 55.000 0.00 0.00 0.00 4.00
1346 11291 0.895530 GAGACCGTGGATGAACTGGA 59.104 55.000 0.00 0.00 0.00 3.86
1347 11292 0.898320 AGACCGTGGATGAACTGGAG 59.102 55.000 0.00 0.00 0.00 3.86
1348 11293 0.741221 GACCGTGGATGAACTGGAGC 60.741 60.000 0.00 0.00 0.00 4.70
1349 11294 1.811266 CCGTGGATGAACTGGAGCG 60.811 63.158 0.00 0.00 0.00 5.03
1351 11296 1.078759 CGTGGATGAACTGGAGCGTC 61.079 60.000 0.00 0.00 0.00 5.19
1353 11298 0.247460 TGGATGAACTGGAGCGTCAG 59.753 55.000 7.62 7.62 40.40 3.51
1354 11299 0.460987 GGATGAACTGGAGCGTCAGG 60.461 60.000 12.64 0.00 38.98 3.86
1355 11300 0.460987 GATGAACTGGAGCGTCAGGG 60.461 60.000 12.64 0.00 38.98 4.45
1356 11301 1.194781 ATGAACTGGAGCGTCAGGGT 61.195 55.000 12.64 2.04 38.98 4.34
1357 11302 1.079750 GAACTGGAGCGTCAGGGTC 60.080 63.158 12.64 6.84 42.48 4.46
1366 11311 2.657237 GTCAGGGTCCTGTCGGTG 59.343 66.667 15.77 0.00 43.96 4.94
1367 11312 1.906824 GTCAGGGTCCTGTCGGTGA 60.907 63.158 15.77 0.00 43.96 4.02
1368 11313 1.078528 TCAGGGTCCTGTCGGTGAT 59.921 57.895 15.77 0.00 43.96 3.06
1369 11314 1.219124 CAGGGTCCTGTCGGTGATG 59.781 63.158 8.78 0.00 39.10 3.07
1371 11316 2.584608 GGTCCTGTCGGTGATGGG 59.415 66.667 0.00 0.00 0.00 4.00
1375 11320 2.187946 CTGTCGGTGATGGGCTCC 59.812 66.667 0.00 0.00 0.00 4.70
1376 11321 2.284625 TGTCGGTGATGGGCTCCT 60.285 61.111 0.00 0.00 0.00 3.69
1378 11323 3.147595 TCGGTGATGGGCTCCTCG 61.148 66.667 0.00 0.00 0.00 4.63
1379 11324 3.147595 CGGTGATGGGCTCCTCGA 61.148 66.667 0.00 0.00 0.00 4.04
1381 11326 2.105128 GTGATGGGCTCCTCGACG 59.895 66.667 0.00 0.00 0.00 5.12
1382 11327 2.362503 TGATGGGCTCCTCGACGT 60.363 61.111 0.00 0.00 0.00 4.34
1383 11328 2.413765 GATGGGCTCCTCGACGTC 59.586 66.667 5.18 5.18 0.00 4.34
1384 11329 2.362503 ATGGGCTCCTCGACGTCA 60.363 61.111 17.16 1.87 0.00 4.35
1385 11330 1.739338 GATGGGCTCCTCGACGTCAT 61.739 60.000 17.16 0.00 0.00 3.06
1386 11331 1.739338 ATGGGCTCCTCGACGTCATC 61.739 60.000 17.16 0.00 0.00 2.92
1411 11356 4.074526 GCCGCCAGAGACTGCAGA 62.075 66.667 23.35 0.00 0.00 4.26
1412 11357 2.125753 CCGCCAGAGACTGCAGAC 60.126 66.667 23.35 15.44 0.00 3.51
1414 11359 2.125753 GCCAGAGACTGCAGACGG 60.126 66.667 23.35 12.30 0.00 4.79
1415 11360 2.125753 CCAGAGACTGCAGACGGC 60.126 66.667 23.35 12.10 45.13 5.68
1435 11380 2.853914 GCGTTCTCGGCAACAGTC 59.146 61.111 0.00 0.00 37.56 3.51
1437 11382 1.891060 GCGTTCTCGGCAACAGTCAG 61.891 60.000 0.00 0.00 37.56 3.51
1440 11385 0.033504 TTCTCGGCAACAGTCAGGTC 59.966 55.000 0.00 0.00 0.00 3.85
1442 11387 2.358737 CGGCAACAGTCAGGTCCC 60.359 66.667 0.00 0.00 0.00 4.46
1445 11390 2.529744 GCAACAGTCAGGTCCCCCT 61.530 63.158 0.00 0.00 44.02 4.79
1458 11403 4.704833 CCCCTGGACCGTGCTGTG 62.705 72.222 0.00 0.00 0.00 3.66
1459 11404 4.704833 CCCTGGACCGTGCTGTGG 62.705 72.222 0.00 0.00 0.00 4.17
1461 11406 2.425592 CTGGACCGTGCTGTGGAA 59.574 61.111 0.00 0.00 0.00 3.53
1462 11407 1.003355 CTGGACCGTGCTGTGGAAT 60.003 57.895 0.00 0.00 0.00 3.01
1463 11408 0.606401 CTGGACCGTGCTGTGGAATT 60.606 55.000 0.00 0.00 0.00 2.17
1466 11411 1.635663 GACCGTGCTGTGGAATTCCG 61.636 60.000 19.57 6.74 39.43 4.30
1467 11412 2.480555 CGTGCTGTGGAATTCCGC 59.519 61.111 27.82 27.82 46.40 5.54
1469 11414 2.745884 TGCTGTGGAATTCCGCCG 60.746 61.111 30.42 25.84 45.66 6.46
1470 11415 2.435938 GCTGTGGAATTCCGCCGA 60.436 61.111 30.42 15.30 45.66 5.54
1471 11416 2.464459 GCTGTGGAATTCCGCCGAG 61.464 63.158 30.42 23.40 45.66 4.63
1472 11417 1.218047 CTGTGGAATTCCGCCGAGA 59.782 57.895 30.42 14.29 45.66 4.04
1473 11418 0.807667 CTGTGGAATTCCGCCGAGAG 60.808 60.000 30.42 19.18 45.66 3.20
1502 11447 4.467084 GGCCGGCCTGATTGTCGA 62.467 66.667 38.76 0.00 0.00 4.20
1551 12913 0.877071 CGCTGCATCACTTTCTTGGT 59.123 50.000 0.00 0.00 0.00 3.67
1628 12990 2.762887 TGGAGATTCTTGATCGAGCAGT 59.237 45.455 2.57 0.00 39.85 4.40
1671 13033 0.944311 CCACGCCAGTAGACACACAC 60.944 60.000 0.00 0.00 0.00 3.82
1850 13212 0.247814 CAGTTGCTAAAGCGCATCCG 60.248 55.000 11.47 0.00 45.83 4.18
1989 13351 1.700739 TCGGGGTATTGTGTGTTCCTT 59.299 47.619 0.00 0.00 0.00 3.36
1990 13352 2.905085 TCGGGGTATTGTGTGTTCCTTA 59.095 45.455 0.00 0.00 0.00 2.69
2190 13552 3.245284 GCGCGATGTACATGTCAACTAAT 59.755 43.478 14.43 0.00 0.00 1.73
2441 13810 2.112297 GGACAACGGCCTTGACCA 59.888 61.111 21.94 0.00 42.45 4.02
2576 13945 5.307196 ACCTCTCCGCATGTATAAATAACCT 59.693 40.000 0.00 0.00 0.00 3.50
2768 15221 3.109592 TTTCCGGTGGTCGCCTTGT 62.110 57.895 0.00 0.00 37.59 3.16
2789 15252 1.078848 ACGAGCTCTTCCACCATGC 60.079 57.895 12.85 0.00 0.00 4.06
2869 15332 7.818930 CGTATAAACTGACTGGTTTACCCTAAA 59.181 37.037 0.00 0.00 42.15 1.85
2873 15336 7.907841 AACTGACTGGTTTACCCTAAATTTT 57.092 32.000 0.00 0.00 34.29 1.82
2934 15420 9.733556 TTCAGTTCATAGGAGCACTTAAAAATA 57.266 29.630 0.00 0.00 0.00 1.40
3318 15830 7.510001 TGTTTTACTTATATCCCAGTATCCGGA 59.490 37.037 6.61 6.61 0.00 5.14
3323 15835 2.704190 ATCCCAGTATCCGGATCTGT 57.296 50.000 27.56 15.73 33.38 3.41
3436 15948 7.967854 CGGAAAAACTAGATGCAACATTTATGA 59.032 33.333 0.00 0.00 0.00 2.15
3489 16001 0.882474 ACTGGAACGGAGAAGACTCG 59.118 55.000 0.00 0.00 43.44 4.18
3518 16030 8.031864 TCACAAAACAATCTGAAAAAGTAGCAA 58.968 29.630 0.00 0.00 0.00 3.91
3592 16106 8.523915 AAATGCTATGAAATTCCTGTACATCA 57.476 30.769 0.00 0.00 0.00 3.07
3603 16117 6.605471 TTCCTGTACATCATCTGTAGTGTT 57.395 37.500 0.00 0.00 40.99 3.32
3604 16118 5.965922 TCCTGTACATCATCTGTAGTGTTG 58.034 41.667 0.00 0.00 40.99 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 2.668632 GGGGTCGTCCAATGCTCA 59.331 61.111 0.04 0.00 37.22 4.26
68 69 2.511600 CGGGGTCGTCCAATGCTC 60.512 66.667 0.04 0.00 37.22 4.26
69 70 3.000819 TCGGGGTCGTCCAATGCT 61.001 61.111 0.04 0.00 37.22 3.79
322 1886 9.616156 TTTTTGAACTCTTGTTGTAGGTATACA 57.384 29.630 5.01 0.00 40.18 2.29
448 2344 9.198837 CTTACAATACACACATGTACTACACAA 57.801 33.333 0.00 0.00 44.11 3.33
550 3232 2.289819 TGATCGGTGAACTTACCAACCC 60.290 50.000 0.00 0.00 40.89 4.11
991 10936 0.238289 GGCACTGTCATGTTGAACGG 59.762 55.000 0.00 0.00 0.00 4.44
1081 11026 1.379146 GGAAAAGGGGAAGGCGAGT 59.621 57.895 0.00 0.00 0.00 4.18
1086 11031 1.678970 CAGGCGGAAAAGGGGAAGG 60.679 63.158 0.00 0.00 0.00 3.46
1087 11032 1.678970 CCAGGCGGAAAAGGGGAAG 60.679 63.158 0.00 0.00 0.00 3.46
1088 11033 2.014033 AACCAGGCGGAAAAGGGGAA 62.014 55.000 2.43 0.00 35.59 3.97
1090 11035 2.117423 AACCAGGCGGAAAAGGGG 59.883 61.111 2.43 0.00 35.59 4.79
1092 11037 2.650778 GCAACCAGGCGGAAAAGG 59.349 61.111 2.43 0.00 35.59 3.11
1093 11038 2.650778 GGCAACCAGGCGGAAAAG 59.349 61.111 2.43 0.00 35.59 2.27
1118 11063 2.101575 TACTCGTGGCGATCGCAC 59.898 61.111 38.00 29.91 44.11 5.34
1120 11065 2.654404 GGTACTCGTGGCGATCGC 60.654 66.667 31.52 31.52 34.61 4.58
1121 11066 2.352001 CGGTACTCGTGGCGATCG 60.352 66.667 11.69 11.69 34.61 3.69
1122 11067 2.654404 GCGGTACTCGTGGCGATC 60.654 66.667 5.79 0.00 41.72 3.69
1123 11068 4.203076 GGCGGTACTCGTGGCGAT 62.203 66.667 5.79 0.00 41.72 4.58
1129 11074 4.247612 GATCGCGGCGGTACTCGT 62.248 66.667 23.46 0.07 41.72 4.18
1162 11107 4.899239 CTCTCCATCGGCCACGCC 62.899 72.222 2.24 0.00 46.75 5.68
1171 11116 3.781770 CTCCACCGCGCTCTCCATC 62.782 68.421 5.56 0.00 0.00 3.51
1172 11117 3.842923 CTCCACCGCGCTCTCCAT 61.843 66.667 5.56 0.00 0.00 3.41
1222 11167 2.266554 CTTGAGGAGATCACGCAGAAC 58.733 52.381 0.00 0.00 37.77 3.01
1223 11168 1.205655 CCTTGAGGAGATCACGCAGAA 59.794 52.381 0.00 0.00 37.77 3.02
1224 11169 0.820226 CCTTGAGGAGATCACGCAGA 59.180 55.000 0.00 0.00 37.77 4.26
1225 11170 0.820226 TCCTTGAGGAGATCACGCAG 59.180 55.000 0.00 0.00 39.78 5.18
1226 11171 2.976099 TCCTTGAGGAGATCACGCA 58.024 52.632 0.00 0.00 39.78 5.24
1237 11182 1.137825 GTCGCGTCTCCTCCTTGAG 59.862 63.158 5.77 0.00 0.00 3.02
1238 11183 2.341101 GGTCGCGTCTCCTCCTTGA 61.341 63.158 5.77 0.00 0.00 3.02
1240 11185 3.441290 CGGTCGCGTCTCCTCCTT 61.441 66.667 5.77 0.00 0.00 3.36
1261 11206 4.323477 TTCCCCACGTTCGCCCAG 62.323 66.667 0.00 0.00 0.00 4.45
1297 11242 2.174107 CATGTGCTCGCAACGGTG 59.826 61.111 0.00 0.00 0.00 4.94
1299 11244 3.252665 TTGCATGTGCTCGCAACGG 62.253 57.895 6.55 0.00 42.93 4.44
1300 11245 2.251963 TTGCATGTGCTCGCAACG 59.748 55.556 6.55 0.00 42.93 4.10
1302 11247 2.644418 GGTTGCATGTGCTCGCAA 59.356 55.556 6.55 0.00 45.45 4.85
1303 11248 3.725459 CGGTTGCATGTGCTCGCA 61.725 61.111 6.55 0.00 42.66 5.10
1306 11251 3.332493 CTGGCGGTTGCATGTGCTC 62.332 63.158 6.55 0.03 45.35 4.26
1309 11254 3.367743 AGCTGGCGGTTGCATGTG 61.368 61.111 0.00 0.00 45.35 3.21
1310 11255 3.367743 CAGCTGGCGGTTGCATGT 61.368 61.111 5.57 0.00 45.35 3.21
1311 11256 3.047718 CTCAGCTGGCGGTTGCATG 62.048 63.158 15.13 0.00 45.35 4.06
1312 11257 2.749044 CTCAGCTGGCGGTTGCAT 60.749 61.111 15.13 0.00 45.35 3.96
1313 11258 3.939939 TCTCAGCTGGCGGTTGCA 61.940 61.111 15.13 0.00 45.35 4.08
1314 11259 3.426568 GTCTCAGCTGGCGGTTGC 61.427 66.667 15.13 0.00 41.71 4.17
1315 11260 2.743928 GGTCTCAGCTGGCGGTTG 60.744 66.667 15.13 3.45 0.00 3.77
1320 11265 3.023949 ATCCACGGTCTCAGCTGGC 62.024 63.158 15.13 4.59 0.00 4.85
1322 11267 0.247460 TTCATCCACGGTCTCAGCTG 59.753 55.000 7.63 7.63 0.00 4.24
1323 11268 0.247736 GTTCATCCACGGTCTCAGCT 59.752 55.000 0.00 0.00 0.00 4.24
1324 11269 0.247736 AGTTCATCCACGGTCTCAGC 59.752 55.000 0.00 0.00 0.00 4.26
1326 11271 0.608130 CCAGTTCATCCACGGTCTCA 59.392 55.000 0.00 0.00 0.00 3.27
1327 11272 0.895530 TCCAGTTCATCCACGGTCTC 59.104 55.000 0.00 0.00 0.00 3.36
1328 11273 0.898320 CTCCAGTTCATCCACGGTCT 59.102 55.000 0.00 0.00 0.00 3.85
1329 11274 0.741221 GCTCCAGTTCATCCACGGTC 60.741 60.000 0.00 0.00 0.00 4.79
1330 11275 1.296715 GCTCCAGTTCATCCACGGT 59.703 57.895 0.00 0.00 0.00 4.83
1333 11278 0.037326 TGACGCTCCAGTTCATCCAC 60.037 55.000 0.00 0.00 0.00 4.02
1335 11280 0.460987 CCTGACGCTCCAGTTCATCC 60.461 60.000 0.00 0.00 32.43 3.51
1336 11281 0.460987 CCCTGACGCTCCAGTTCATC 60.461 60.000 0.00 0.00 32.43 2.92
1337 11282 1.194781 ACCCTGACGCTCCAGTTCAT 61.195 55.000 0.00 0.00 32.43 2.57
1341 11286 2.997897 GGACCCTGACGCTCCAGT 60.998 66.667 0.00 0.00 32.43 4.00
1342 11287 2.681778 AGGACCCTGACGCTCCAG 60.682 66.667 0.00 0.00 0.00 3.86
1344 11289 2.997897 ACAGGACCCTGACGCTCC 60.998 66.667 21.84 0.00 46.30 4.70
1345 11290 2.574399 GACAGGACCCTGACGCTC 59.426 66.667 21.84 5.92 46.30 5.03
1349 11294 1.258445 ATCACCGACAGGACCCTGAC 61.258 60.000 21.84 14.73 46.30 3.51
1353 11298 2.584608 CCATCACCGACAGGACCC 59.415 66.667 0.00 0.00 41.02 4.46
1354 11299 2.584608 CCCATCACCGACAGGACC 59.415 66.667 0.00 0.00 41.02 4.46
1355 11300 2.125106 GCCCATCACCGACAGGAC 60.125 66.667 0.00 0.00 41.02 3.85
1356 11301 2.284625 AGCCCATCACCGACAGGA 60.285 61.111 0.00 0.00 41.02 3.86
1357 11302 2.187946 GAGCCCATCACCGACAGG 59.812 66.667 0.00 0.00 45.13 4.00
1358 11303 2.187946 GGAGCCCATCACCGACAG 59.812 66.667 0.00 0.00 0.00 3.51
1359 11304 2.284625 AGGAGCCCATCACCGACA 60.285 61.111 0.00 0.00 0.00 4.35
1360 11305 2.501610 GAGGAGCCCATCACCGAC 59.498 66.667 0.00 0.00 0.00 4.79
1361 11306 3.147595 CGAGGAGCCCATCACCGA 61.148 66.667 0.00 0.00 0.00 4.69
1363 11308 2.501610 GTCGAGGAGCCCATCACC 59.498 66.667 0.00 0.00 0.00 4.02
1364 11309 2.105128 CGTCGAGGAGCCCATCAC 59.895 66.667 0.00 0.00 0.00 3.06
1366 11311 1.739338 ATGACGTCGAGGAGCCCATC 61.739 60.000 12.85 0.00 0.00 3.51
1367 11312 1.739338 GATGACGTCGAGGAGCCCAT 61.739 60.000 12.85 9.00 0.00 4.00
1368 11313 2.362503 ATGACGTCGAGGAGCCCA 60.363 61.111 12.85 4.66 0.00 5.36
1369 11314 2.413765 GATGACGTCGAGGAGCCC 59.586 66.667 12.85 0.00 0.00 5.19
1394 11339 4.074526 TCTGCAGTCTCTGGCGGC 62.075 66.667 14.67 0.00 36.35 6.53
1395 11340 2.125753 GTCTGCAGTCTCTGGCGG 60.126 66.667 14.67 0.00 37.75 6.13
1397 11342 2.125753 CCGTCTGCAGTCTCTGGC 60.126 66.667 14.67 0.00 31.21 4.85
1398 11343 2.125753 GCCGTCTGCAGTCTCTGG 60.126 66.667 14.67 10.40 40.77 3.86
1399 11344 2.505777 CGCCGTCTGCAGTCTCTG 60.506 66.667 14.67 3.81 41.33 3.35
1401 11346 4.803426 CCCGCCGTCTGCAGTCTC 62.803 72.222 14.67 5.02 41.33 3.36
1416 11361 3.423154 CTGTTGCCGAGAACGCCC 61.423 66.667 0.00 0.00 38.29 6.13
1417 11362 2.665185 ACTGTTGCCGAGAACGCC 60.665 61.111 0.00 0.00 38.29 5.68
1418 11363 1.891060 CTGACTGTTGCCGAGAACGC 61.891 60.000 0.00 0.00 38.29 4.84
1419 11364 1.284982 CCTGACTGTTGCCGAGAACG 61.285 60.000 0.00 0.00 39.43 3.95
1420 11365 0.249911 ACCTGACTGTTGCCGAGAAC 60.250 55.000 0.00 0.00 0.00 3.01
1422 11367 1.666011 GACCTGACTGTTGCCGAGA 59.334 57.895 0.00 0.00 0.00 4.04
1424 11369 2.741092 GGACCTGACTGTTGCCGA 59.259 61.111 0.00 0.00 0.00 5.54
1442 11387 4.704833 CCACAGCACGGTCCAGGG 62.705 72.222 0.00 0.00 0.00 4.45
1445 11390 0.605319 GAATTCCACAGCACGGTCCA 60.605 55.000 0.00 0.00 0.00 4.02
1446 11391 1.305930 GGAATTCCACAGCACGGTCC 61.306 60.000 20.04 0.00 35.64 4.46
1447 11392 1.635663 CGGAATTCCACAGCACGGTC 61.636 60.000 24.09 0.00 35.14 4.79
1448 11393 1.671054 CGGAATTCCACAGCACGGT 60.671 57.895 24.09 0.00 35.14 4.83
1449 11394 3.039202 GCGGAATTCCACAGCACGG 62.039 63.158 24.09 6.36 35.14 4.94
1451 11396 2.877691 GGCGGAATTCCACAGCAC 59.122 61.111 24.09 9.69 35.14 4.40
1452 11397 2.745884 CGGCGGAATTCCACAGCA 60.746 61.111 24.09 0.00 35.14 4.41
1453 11398 2.435938 TCGGCGGAATTCCACAGC 60.436 61.111 24.09 18.12 35.14 4.40
1454 11399 0.807667 CTCTCGGCGGAATTCCACAG 60.808 60.000 24.09 15.23 35.14 3.66
1456 11401 1.521681 CCTCTCGGCGGAATTCCAC 60.522 63.158 24.09 14.64 35.14 4.02
1458 11403 1.521681 CACCTCTCGGCGGAATTCC 60.522 63.158 15.01 15.01 0.00 3.01
1459 11404 0.108329 TTCACCTCTCGGCGGAATTC 60.108 55.000 7.21 0.00 0.00 2.17
1461 11406 0.105039 GATTCACCTCTCGGCGGAAT 59.895 55.000 7.21 6.79 39.16 3.01
1462 11407 1.515954 GATTCACCTCTCGGCGGAA 59.484 57.895 7.21 1.17 33.21 4.30
1463 11408 2.771639 CGATTCACCTCTCGGCGGA 61.772 63.158 7.21 2.06 0.00 5.54
1466 11411 2.167861 GTGCGATTCACCTCTCGGC 61.168 63.158 0.00 0.00 39.79 5.54
1467 11412 1.874019 CGTGCGATTCACCTCTCGG 60.874 63.158 0.00 0.00 42.69 4.63
1469 11414 2.167861 GCCGTGCGATTCACCTCTC 61.168 63.158 0.00 0.00 42.69 3.20
1470 11415 2.125512 GCCGTGCGATTCACCTCT 60.126 61.111 0.00 0.00 42.69 3.69
1471 11416 3.195698 GGCCGTGCGATTCACCTC 61.196 66.667 0.00 0.00 42.69 3.85
1483 11428 4.778143 GACAATCAGGCCGGCCGT 62.778 66.667 38.88 29.72 41.95 5.68
1487 11432 2.202932 CCTCGACAATCAGGCCGG 60.203 66.667 0.00 0.00 0.00 6.13
1488 11433 0.807667 CTTCCTCGACAATCAGGCCG 60.808 60.000 0.00 0.00 0.00 6.13
1490 11435 2.386661 TTCTTCCTCGACAATCAGGC 57.613 50.000 0.00 0.00 0.00 4.85
1491 11436 3.553511 CGAATTCTTCCTCGACAATCAGG 59.446 47.826 3.52 0.00 37.23 3.86
1492 11437 3.000724 GCGAATTCTTCCTCGACAATCAG 59.999 47.826 3.52 0.00 37.23 2.90
1493 11438 2.930040 GCGAATTCTTCCTCGACAATCA 59.070 45.455 3.52 0.00 37.23 2.57
1494 11439 2.285488 GGCGAATTCTTCCTCGACAATC 59.715 50.000 3.52 0.00 42.80 2.67
1495 11440 2.280628 GGCGAATTCTTCCTCGACAAT 58.719 47.619 3.52 0.00 42.80 2.71
1498 11443 1.594862 CATGGCGAATTCTTCCTCGAC 59.405 52.381 3.52 0.00 43.59 4.20
1499 11444 1.207089 ACATGGCGAATTCTTCCTCGA 59.793 47.619 3.52 0.00 37.23 4.04
1501 11446 1.943340 GGACATGGCGAATTCTTCCTC 59.057 52.381 3.52 0.00 0.00 3.71
1502 11447 1.743772 CGGACATGGCGAATTCTTCCT 60.744 52.381 3.52 0.00 0.00 3.36
1628 12990 4.888326 AAGGGTTTGCAATTAAGCATCA 57.112 36.364 0.00 0.00 45.19 3.07
1671 13033 0.169672 CATCAGCTGGGAGTTTTGCG 59.830 55.000 15.13 0.00 0.00 4.85
1850 13212 3.766691 TCCCACGAAGGTAGCGCC 61.767 66.667 2.29 0.00 34.66 6.53
1989 13351 1.666553 CGACACAAGGTTGCCGCTA 60.667 57.895 0.00 0.00 0.00 4.26
1990 13352 2.972505 CGACACAAGGTTGCCGCT 60.973 61.111 0.00 0.00 0.00 5.52
2190 13552 2.034048 TACGCTGGTGTTGCACAGGA 62.034 55.000 4.42 0.00 35.86 3.86
2576 13945 5.050159 GCACACATGTATTCATATCTCGCAA 60.050 40.000 0.00 0.00 32.47 4.85
2768 15221 0.904865 ATGGTGGAAGAGCTCGTGGA 60.905 55.000 6.97 0.00 0.00 4.02
2789 15252 1.001764 TTGGATGGCTGCCAGTCAG 60.002 57.895 27.20 0.00 45.62 3.51
2869 15332 7.090953 TGAACTGAACTTAAACGGTGAAAAT 57.909 32.000 0.00 0.00 0.00 1.82
2873 15336 6.238538 GGAATTGAACTGAACTTAAACGGTGA 60.239 38.462 0.00 0.00 0.00 4.02
2905 15391 2.237392 AGTGCTCCTATGAACTGAACCC 59.763 50.000 0.00 0.00 0.00 4.11
3336 15848 1.490574 CGGACCTGGAAGAGGAGATT 58.509 55.000 0.00 0.00 46.33 2.40
3366 15878 8.421249 TCAAATTTGAAAGATTGTGGGAGTAT 57.579 30.769 18.45 0.00 33.55 2.12
3489 16001 7.595311 ACTTTTTCAGATTGTTTTGTGAACC 57.405 32.000 0.00 0.00 0.00 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.