Multiple sequence alignment - TraesCS3B01G224900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G224900 chr3B 100.000 5297 0 0 1 5297 306584807 306579511 0.000000e+00 9782.0
1 TraesCS3B01G224900 chr3B 86.589 768 66 18 4544 5297 617404714 617403970 0.000000e+00 813.0
2 TraesCS3B01G224900 chr3B 82.282 666 97 13 137 791 792855593 792854938 1.670000e-154 556.0
3 TraesCS3B01G224900 chr3B 91.358 81 7 0 4542 4622 244388738 244388658 1.560000e-20 111.0
4 TraesCS3B01G224900 chr3B 87.209 86 11 0 4537 4622 27104460 27104545 1.210000e-16 99.0
5 TraesCS3B01G224900 chr3B 86.486 74 10 0 794 867 306664449 306664522 1.220000e-11 82.4
6 TraesCS3B01G224900 chr3B 96.000 50 1 1 4486 4535 760381177 760381225 4.400000e-11 80.5
7 TraesCS3B01G224900 chr3D 95.281 2437 71 17 868 3278 254365968 254363550 0.000000e+00 3823.0
8 TraesCS3B01G224900 chr3D 97.336 1126 24 4 3372 4493 254363551 254362428 0.000000e+00 1908.0
9 TraesCS3B01G224900 chr3D 86.905 756 76 11 4546 5297 504358151 504357415 0.000000e+00 826.0
10 TraesCS3B01G224900 chr3A 95.353 1786 53 11 1350 3108 328932882 328931100 0.000000e+00 2811.0
11 TraesCS3B01G224900 chr3A 95.353 1033 34 7 3473 4493 328929817 328928787 0.000000e+00 1629.0
12 TraesCS3B01G224900 chr3A 97.311 409 10 1 932 1340 328933590 328933183 0.000000e+00 693.0
13 TraesCS3B01G224900 chr3A 95.906 171 7 0 3108 3278 328930055 328929885 1.450000e-70 278.0
14 TraesCS3B01G224900 chr3A 95.946 74 3 0 3372 3445 328929886 328929813 2.590000e-23 121.0
15 TraesCS3B01G224900 chr7D 88.336 763 74 11 4543 5297 572187642 572188397 0.000000e+00 902.0
16 TraesCS3B01G224900 chr7D 89.392 707 70 5 4594 5297 363044110 363043406 0.000000e+00 885.0
17 TraesCS3B01G224900 chr7D 83.944 791 86 17 1 776 603159494 603160258 0.000000e+00 719.0
18 TraesCS3B01G224900 chr7D 80.882 816 114 27 1 792 419771441 419772238 5.870000e-169 604.0
19 TraesCS3B01G224900 chr7D 80.657 822 112 30 1 790 575003785 575004591 1.270000e-165 593.0
20 TraesCS3B01G224900 chr7D 95.349 43 1 1 4406 4448 127000374 127000333 3.420000e-07 67.6
21 TraesCS3B01G224900 chr7D 95.122 41 2 0 4408 4448 461952508 461952468 1.230000e-06 65.8
22 TraesCS3B01G224900 chr7B 87.760 768 73 8 4544 5297 127622622 127623382 0.000000e+00 878.0
23 TraesCS3B01G224900 chr7B 86.180 767 84 12 4546 5297 672792377 672791618 0.000000e+00 809.0
24 TraesCS3B01G224900 chr7B 83.700 227 25 7 2587 2803 246266753 246266977 2.500000e-48 204.0
25 TraesCS3B01G224900 chr6B 87.386 769 74 15 4544 5297 85838176 85837416 0.000000e+00 861.0
26 TraesCS3B01G224900 chr6B 82.945 815 109 14 1 791 643651601 643650793 0.000000e+00 708.0
27 TraesCS3B01G224900 chr6B 96.000 100 4 0 3277 3376 529769702 529769801 4.240000e-36 163.0
28 TraesCS3B01G224900 chr5B 87.383 745 73 12 4559 5297 348018748 348018019 0.000000e+00 835.0
29 TraesCS3B01G224900 chr5B 88.353 601 62 4 4699 5297 243358548 243357954 0.000000e+00 715.0
30 TraesCS3B01G224900 chr5B 83.735 664 89 11 137 789 682403665 682403010 1.260000e-170 610.0
31 TraesCS3B01G224900 chr5B 90.476 63 5 1 789 850 61368034 61368096 1.220000e-11 82.4
32 TraesCS3B01G224900 chr5B 96.000 50 1 1 4486 4535 356191149 356191101 4.400000e-11 80.5
33 TraesCS3B01G224900 chr5B 96.000 50 1 1 4486 4535 662974373 662974421 4.400000e-11 80.5
34 TraesCS3B01G224900 chr2B 88.580 683 68 6 4618 5297 33588157 33587482 0.000000e+00 821.0
35 TraesCS3B01G224900 chr2B 86.194 775 79 15 4544 5297 6541452 6542219 0.000000e+00 813.0
36 TraesCS3B01G224900 chr2B 85.976 763 75 14 4561 5297 451814760 451815516 0.000000e+00 787.0
37 TraesCS3B01G224900 chr2B 88.976 127 10 4 3258 3382 601206962 601206838 2.550000e-33 154.0
38 TraesCS3B01G224900 chr5A 84.746 767 75 17 4544 5297 92212201 92212938 0.000000e+00 730.0
39 TraesCS3B01G224900 chr5A 79.691 517 82 16 4544 5057 662540954 662540458 8.440000e-93 351.0
40 TraesCS3B01G224900 chr5A 96.000 50 1 1 4486 4535 534122837 534122789 4.400000e-11 80.5
41 TraesCS3B01G224900 chr4D 90.054 553 48 3 4746 5297 25403387 25403933 0.000000e+00 710.0
42 TraesCS3B01G224900 chr4D 82.625 800 109 22 1 791 34131745 34130967 0.000000e+00 680.0
43 TraesCS3B01G224900 chr4D 85.816 141 12 7 3238 3373 238299846 238299983 5.530000e-30 143.0
44 TraesCS3B01G224900 chr4D 96.000 50 1 1 4486 4535 382741483 382741435 4.400000e-11 80.5
45 TraesCS3B01G224900 chr5D 81.943 803 121 18 1 790 352819778 352820569 0.000000e+00 658.0
46 TraesCS3B01G224900 chr5D 96.040 101 4 0 3277 3377 558970531 558970431 1.180000e-36 165.0
47 TraesCS3B01G224900 chr5D 91.892 74 6 0 789 862 86766593 86766666 2.610000e-18 104.0
48 TraesCS3B01G224900 chr1D 83.673 637 87 9 163 791 79830418 79829791 7.640000e-163 584.0
49 TraesCS3B01G224900 chr1D 96.907 97 3 0 3277 3373 483907678 483907582 4.240000e-36 163.0
50 TraesCS3B01G224900 chr1D 79.752 242 23 11 1 241 479038309 479038093 9.190000e-33 152.0
51 TraesCS3B01G224900 chr1D 97.297 37 1 0 4412 4448 208856924 208856888 4.430000e-06 63.9
52 TraesCS3B01G224900 chr1D 97.297 37 1 0 4412 4448 228293133 228293169 4.430000e-06 63.9
53 TraesCS3B01G224900 chr4B 96.907 97 3 0 3277 3373 588430323 588430419 4.240000e-36 163.0
54 TraesCS3B01G224900 chr4B 92.105 114 7 2 3263 3375 503337323 503337211 5.490000e-35 159.0
55 TraesCS3B01G224900 chr2D 92.035 113 8 1 3265 3377 30406637 30406748 1.970000e-34 158.0
56 TraesCS3B01G224900 chr2D 96.000 50 1 1 4486 4535 490469225 490469273 4.400000e-11 80.5
57 TraesCS3B01G224900 chr1B 94.118 102 6 0 3272 3373 429279008 429278907 7.100000e-34 156.0
58 TraesCS3B01G224900 chr7A 87.603 121 15 0 4543 4663 660167190 660167310 1.990000e-29 141.0
59 TraesCS3B01G224900 chr7A 95.349 43 1 1 4406 4448 127774308 127774267 3.420000e-07 67.6
60 TraesCS3B01G224900 chr6A 86.992 123 16 0 4544 4666 516162146 516162268 7.150000e-29 139.0
61 TraesCS3B01G224900 chr6A 85.333 75 6 2 4410 4479 514036217 514036291 7.360000e-09 73.1
62 TraesCS3B01G224900 chr6D 95.455 44 2 0 4405 4448 150161647 150161604 2.650000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G224900 chr3B 306579511 306584807 5296 True 9782.0 9782 100.0000 1 5297 1 chr3B.!!$R2 5296
1 TraesCS3B01G224900 chr3B 617403970 617404714 744 True 813.0 813 86.5890 4544 5297 1 chr3B.!!$R3 753
2 TraesCS3B01G224900 chr3B 792854938 792855593 655 True 556.0 556 82.2820 137 791 1 chr3B.!!$R4 654
3 TraesCS3B01G224900 chr3D 254362428 254365968 3540 True 2865.5 3823 96.3085 868 4493 2 chr3D.!!$R2 3625
4 TraesCS3B01G224900 chr3D 504357415 504358151 736 True 826.0 826 86.9050 4546 5297 1 chr3D.!!$R1 751
5 TraesCS3B01G224900 chr3A 328928787 328933590 4803 True 1106.4 2811 95.9738 932 4493 5 chr3A.!!$R1 3561
6 TraesCS3B01G224900 chr7D 572187642 572188397 755 False 902.0 902 88.3360 4543 5297 1 chr7D.!!$F2 754
7 TraesCS3B01G224900 chr7D 363043406 363044110 704 True 885.0 885 89.3920 4594 5297 1 chr7D.!!$R2 703
8 TraesCS3B01G224900 chr7D 603159494 603160258 764 False 719.0 719 83.9440 1 776 1 chr7D.!!$F4 775
9 TraesCS3B01G224900 chr7D 419771441 419772238 797 False 604.0 604 80.8820 1 792 1 chr7D.!!$F1 791
10 TraesCS3B01G224900 chr7D 575003785 575004591 806 False 593.0 593 80.6570 1 790 1 chr7D.!!$F3 789
11 TraesCS3B01G224900 chr7B 127622622 127623382 760 False 878.0 878 87.7600 4544 5297 1 chr7B.!!$F1 753
12 TraesCS3B01G224900 chr7B 672791618 672792377 759 True 809.0 809 86.1800 4546 5297 1 chr7B.!!$R1 751
13 TraesCS3B01G224900 chr6B 85837416 85838176 760 True 861.0 861 87.3860 4544 5297 1 chr6B.!!$R1 753
14 TraesCS3B01G224900 chr6B 643650793 643651601 808 True 708.0 708 82.9450 1 791 1 chr6B.!!$R2 790
15 TraesCS3B01G224900 chr5B 348018019 348018748 729 True 835.0 835 87.3830 4559 5297 1 chr5B.!!$R2 738
16 TraesCS3B01G224900 chr5B 243357954 243358548 594 True 715.0 715 88.3530 4699 5297 1 chr5B.!!$R1 598
17 TraesCS3B01G224900 chr5B 682403010 682403665 655 True 610.0 610 83.7350 137 789 1 chr5B.!!$R4 652
18 TraesCS3B01G224900 chr2B 33587482 33588157 675 True 821.0 821 88.5800 4618 5297 1 chr2B.!!$R1 679
19 TraesCS3B01G224900 chr2B 6541452 6542219 767 False 813.0 813 86.1940 4544 5297 1 chr2B.!!$F1 753
20 TraesCS3B01G224900 chr2B 451814760 451815516 756 False 787.0 787 85.9760 4561 5297 1 chr2B.!!$F2 736
21 TraesCS3B01G224900 chr5A 92212201 92212938 737 False 730.0 730 84.7460 4544 5297 1 chr5A.!!$F1 753
22 TraesCS3B01G224900 chr4D 25403387 25403933 546 False 710.0 710 90.0540 4746 5297 1 chr4D.!!$F1 551
23 TraesCS3B01G224900 chr4D 34130967 34131745 778 True 680.0 680 82.6250 1 791 1 chr4D.!!$R1 790
24 TraesCS3B01G224900 chr5D 352819778 352820569 791 False 658.0 658 81.9430 1 790 1 chr5D.!!$F2 789
25 TraesCS3B01G224900 chr1D 79829791 79830418 627 True 584.0 584 83.6730 163 791 1 chr1D.!!$R1 628

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
812 907 0.025256 GAGCAGTCGACGAGTACGAG 59.975 60.000 10.46 0.00 42.66 4.18 F
819 914 0.027716 CGACGAGTACGAGGACCATG 59.972 60.000 0.00 0.00 42.66 3.66 F
827 922 0.108804 ACGAGGACCATGCTGTTACG 60.109 55.000 0.00 0.00 0.00 3.18 F
828 923 0.108804 CGAGGACCATGCTGTTACGT 60.109 55.000 0.00 0.00 0.00 3.57 F
838 933 0.179119 GCTGTTACGTGCCGGATAGT 60.179 55.000 5.05 3.05 0.00 2.12 F
1142 1239 0.467290 CTAGCTCCGCTCCTCCTTCT 60.467 60.000 0.00 0.00 40.44 2.85 F
1161 1258 1.148949 CCATGTGATGGGATGCCGA 59.851 57.895 0.00 0.00 46.86 5.54 F
2344 2763 1.594293 CCGCCTATCGAACCGCAAT 60.594 57.895 0.00 0.00 41.67 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1722 2111 0.109319 CATACCAGGCAAAACGGCAC 60.109 55.000 0.00 0.0 44.47 5.01 R
1878 2271 2.297701 CACCTAGCCACAAAGTGTGTT 58.702 47.619 7.55 0.0 46.45 3.32 R
2118 2519 2.622942 GGTGCTCACAGGACAAAAATGA 59.377 45.455 2.21 0.0 38.40 2.57 R
2120 2521 2.949447 AGGTGCTCACAGGACAAAAAT 58.051 42.857 2.21 0.0 38.40 1.82 R
2310 2729 6.533723 CGATAGGCGGTTTTATATCAATGCTA 59.466 38.462 0.00 0.0 36.03 3.49 R
3025 3444 3.760580 AGAGAACAAGTGCTACAAGCT 57.239 42.857 0.03 0.0 42.97 3.74 R
3276 4741 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.0 0.00 2.59 R
4345 5821 0.032678 AAGTCAGTCACAGCCTCACG 59.967 55.000 0.00 0.0 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.499827 GGAAGAGGAGGCGGCGTAT 61.500 63.158 9.37 0.00 0.00 3.06
47 60 2.666190 CGTATGAGGCGGCCATGG 60.666 66.667 23.09 7.63 0.00 3.66
48 61 2.980233 GTATGAGGCGGCCATGGC 60.980 66.667 29.47 29.47 41.06 4.40
56 69 4.155733 CGGCCATGGCGTAGACCA 62.156 66.667 29.90 0.00 46.33 4.02
94 107 2.740055 GACTGCGTCCTGGTGCTG 60.740 66.667 15.02 15.02 36.29 4.41
176 208 2.196925 ATCGAGCGCTACTCCTGGG 61.197 63.158 11.50 0.00 43.01 4.45
261 293 2.406205 AGGCGTACCTCGAGATGTC 58.594 57.895 15.71 1.38 46.34 3.06
292 324 4.421479 CTGGCCGAGAAGCGTCGT 62.421 66.667 0.00 0.00 38.32 4.34
295 327 2.876645 GCCGAGAAGCGTCGTCAG 60.877 66.667 5.62 0.00 38.32 3.51
418 480 2.359354 CCCGACATGAACGCCCAA 60.359 61.111 0.00 0.00 0.00 4.12
441 503 0.249741 AACACGACGTTCTCCTTGGG 60.250 55.000 0.00 0.00 29.27 4.12
443 505 2.434359 CGACGTTCTCCTTGGGCC 60.434 66.667 0.00 0.00 0.00 5.80
487 566 3.473166 CGAGGACGACGACGACGA 61.473 66.667 25.15 0.00 41.06 4.20
488 567 2.095469 GAGGACGACGACGACGAC 59.905 66.667 25.15 18.64 42.66 4.34
522 601 1.740296 GCGCCGCCTCAGAGTTTAA 60.740 57.895 0.00 0.00 0.00 1.52
583 663 4.148825 CTCGCCGGTCTTCCTGGG 62.149 72.222 1.90 0.00 33.50 4.45
697 789 3.361158 CATGCGCCGACCCAAACA 61.361 61.111 4.18 0.00 0.00 2.83
767 862 3.292460 ACAAAATCACCTTCCGTTTGGA 58.708 40.909 0.00 0.00 44.61 3.53
792 887 0.804989 CCGCTGGAGTTGCTTTAAGG 59.195 55.000 0.00 0.00 0.00 2.69
793 888 0.804989 CGCTGGAGTTGCTTTAAGGG 59.195 55.000 0.00 0.00 0.00 3.95
794 889 1.610624 CGCTGGAGTTGCTTTAAGGGA 60.611 52.381 0.00 0.00 0.00 4.20
795 890 2.087646 GCTGGAGTTGCTTTAAGGGAG 58.912 52.381 0.00 0.00 0.00 4.30
796 891 2.087646 CTGGAGTTGCTTTAAGGGAGC 58.912 52.381 0.00 0.00 40.53 4.70
801 896 3.532896 TGCTTTAAGGGAGCAGTCG 57.467 52.632 0.00 0.00 44.63 4.18
802 897 0.973632 TGCTTTAAGGGAGCAGTCGA 59.026 50.000 0.00 0.00 44.63 4.20
803 898 1.337823 TGCTTTAAGGGAGCAGTCGAC 60.338 52.381 7.70 7.70 44.63 4.20
804 899 1.630148 CTTTAAGGGAGCAGTCGACG 58.370 55.000 10.46 6.47 0.00 5.12
805 900 1.201647 CTTTAAGGGAGCAGTCGACGA 59.798 52.381 10.46 0.00 0.00 4.20
806 901 0.809385 TTAAGGGAGCAGTCGACGAG 59.191 55.000 10.46 8.31 0.00 4.18
807 902 0.322277 TAAGGGAGCAGTCGACGAGT 60.322 55.000 10.46 0.00 0.00 4.18
808 903 0.322277 AAGGGAGCAGTCGACGAGTA 60.322 55.000 10.46 0.00 0.00 2.59
809 904 1.025647 AGGGAGCAGTCGACGAGTAC 61.026 60.000 10.46 0.00 0.00 2.73
810 905 1.060622 GGAGCAGTCGACGAGTACG 59.939 63.158 10.46 0.00 45.75 3.67
811 906 1.357258 GGAGCAGTCGACGAGTACGA 61.357 60.000 10.46 0.00 42.66 3.43
812 907 0.025256 GAGCAGTCGACGAGTACGAG 59.975 60.000 10.46 0.00 42.66 4.18
813 908 1.060622 GCAGTCGACGAGTACGAGG 59.939 63.158 10.46 0.00 42.66 4.63
814 909 1.357258 GCAGTCGACGAGTACGAGGA 61.357 60.000 10.46 0.00 42.66 3.71
815 910 0.369589 CAGTCGACGAGTACGAGGAC 59.630 60.000 10.46 0.00 42.66 3.85
816 911 0.739112 AGTCGACGAGTACGAGGACC 60.739 60.000 10.46 0.00 41.72 4.46
817 912 1.016130 GTCGACGAGTACGAGGACCA 61.016 60.000 0.00 0.00 42.66 4.02
818 913 0.107993 TCGACGAGTACGAGGACCAT 60.108 55.000 0.00 0.00 42.66 3.55
819 914 0.027716 CGACGAGTACGAGGACCATG 59.972 60.000 0.00 0.00 42.66 3.66
820 915 0.248539 GACGAGTACGAGGACCATGC 60.249 60.000 0.00 0.00 42.66 4.06
821 916 0.680280 ACGAGTACGAGGACCATGCT 60.680 55.000 0.00 0.00 42.66 3.79
822 917 0.248661 CGAGTACGAGGACCATGCTG 60.249 60.000 0.00 0.00 42.66 4.41
823 918 0.818296 GAGTACGAGGACCATGCTGT 59.182 55.000 0.00 0.00 0.00 4.40
824 919 1.204941 GAGTACGAGGACCATGCTGTT 59.795 52.381 0.00 0.00 0.00 3.16
825 920 2.426024 GAGTACGAGGACCATGCTGTTA 59.574 50.000 0.00 0.00 0.00 2.41
826 921 2.165845 AGTACGAGGACCATGCTGTTAC 59.834 50.000 0.00 0.00 0.00 2.50
827 922 0.108804 ACGAGGACCATGCTGTTACG 60.109 55.000 0.00 0.00 0.00 3.18
828 923 0.108804 CGAGGACCATGCTGTTACGT 60.109 55.000 0.00 0.00 0.00 3.57
829 924 1.359848 GAGGACCATGCTGTTACGTG 58.640 55.000 0.00 0.00 0.00 4.49
830 925 0.673644 AGGACCATGCTGTTACGTGC 60.674 55.000 0.00 0.00 0.00 5.34
831 926 1.644786 GGACCATGCTGTTACGTGCC 61.645 60.000 0.00 0.00 0.00 5.01
832 927 1.966493 GACCATGCTGTTACGTGCCG 61.966 60.000 0.00 0.00 0.00 5.69
833 928 2.749865 CCATGCTGTTACGTGCCGG 61.750 63.158 0.00 0.00 0.00 6.13
834 929 1.739929 CATGCTGTTACGTGCCGGA 60.740 57.895 5.05 0.00 0.00 5.14
835 930 1.089481 CATGCTGTTACGTGCCGGAT 61.089 55.000 5.05 0.00 0.00 4.18
836 931 0.462375 ATGCTGTTACGTGCCGGATA 59.538 50.000 5.05 0.00 0.00 2.59
837 932 0.179121 TGCTGTTACGTGCCGGATAG 60.179 55.000 5.05 0.00 0.00 2.08
838 933 0.179119 GCTGTTACGTGCCGGATAGT 60.179 55.000 5.05 3.05 0.00 2.12
839 934 1.066002 GCTGTTACGTGCCGGATAGTA 59.934 52.381 5.05 1.89 0.00 1.82
840 935 2.288030 GCTGTTACGTGCCGGATAGTAT 60.288 50.000 5.05 0.00 0.00 2.12
841 936 3.058016 GCTGTTACGTGCCGGATAGTATA 60.058 47.826 5.05 0.00 0.00 1.47
842 937 4.720090 CTGTTACGTGCCGGATAGTATAG 58.280 47.826 5.05 3.70 0.00 1.31
843 938 3.503363 TGTTACGTGCCGGATAGTATAGG 59.497 47.826 5.05 0.86 0.00 2.57
844 939 2.283145 ACGTGCCGGATAGTATAGGT 57.717 50.000 5.05 0.00 0.00 3.08
845 940 3.423539 ACGTGCCGGATAGTATAGGTA 57.576 47.619 5.05 0.00 0.00 3.08
846 941 3.077359 ACGTGCCGGATAGTATAGGTAC 58.923 50.000 5.05 12.43 36.28 3.34
847 942 3.244700 ACGTGCCGGATAGTATAGGTACT 60.245 47.826 5.05 7.25 43.45 2.73
848 943 3.126514 CGTGCCGGATAGTATAGGTACTG 59.873 52.174 5.05 10.60 41.22 2.74
849 944 4.077822 GTGCCGGATAGTATAGGTACTGT 58.922 47.826 5.05 0.00 41.22 3.55
850 945 5.248640 GTGCCGGATAGTATAGGTACTGTA 58.751 45.833 5.05 0.00 41.22 2.74
866 961 6.976925 AGGTACTGTACTTGTAATTATGTCGC 59.023 38.462 16.79 0.00 37.18 5.19
876 971 1.329256 ATTATGTCGCGGTAGGCTCT 58.671 50.000 6.13 0.00 40.44 4.09
902 997 7.994194 AGAGGATCAGATTGTGCTAAATTTTC 58.006 34.615 0.00 0.00 37.82 2.29
908 1003 8.578308 TCAGATTGTGCTAAATTTTCAAACAG 57.422 30.769 0.00 0.00 0.00 3.16
921 1016 5.467035 TTTCAAACAGGGATCAAATCACC 57.533 39.130 0.00 0.00 31.36 4.02
930 1025 3.815401 GGGATCAAATCACCCTAATCGTG 59.185 47.826 0.00 0.00 40.39 4.35
942 1038 3.306780 CCCTAATCGTGTGTCAGAAGGTT 60.307 47.826 0.00 0.00 0.00 3.50
943 1039 3.679980 CCTAATCGTGTGTCAGAAGGTTG 59.320 47.826 0.00 0.00 0.00 3.77
1111 1208 0.939443 TTCCCCATCTCCTCCCCCTA 60.939 60.000 0.00 0.00 0.00 3.53
1115 1212 1.152008 CATCTCCTCCCCCTACCCC 60.152 68.421 0.00 0.00 0.00 4.95
1142 1239 0.467290 CTAGCTCCGCTCCTCCTTCT 60.467 60.000 0.00 0.00 40.44 2.85
1161 1258 1.148949 CCATGTGATGGGATGCCGA 59.851 57.895 0.00 0.00 46.86 5.54
1355 1452 1.748122 ATTCCTTCAGGCTGCTGCG 60.748 57.895 10.34 0.00 40.82 5.18
1722 2111 7.559897 TCCTGCTAATTTTACTTCCATTTAGGG 59.440 37.037 0.00 0.00 38.24 3.53
1726 2115 5.932619 ATTTTACTTCCATTTAGGGTGCC 57.067 39.130 0.00 0.00 38.24 5.01
1737 2126 3.989787 GGGTGCCGTTTTGCCTGG 61.990 66.667 0.00 0.00 0.00 4.45
1820 2213 4.074259 CTCGATCATGCCAATGGGATTTA 58.926 43.478 2.67 0.00 29.13 1.40
1833 2226 5.954153 ATGGGATTTATTGGTTTGCATGA 57.046 34.783 0.00 0.00 0.00 3.07
1861 2254 8.154856 GGGATTGAATTACATAAGGTAGCTACA 58.845 37.037 24.75 5.52 32.49 2.74
1863 2256 7.997107 TTGAATTACATAAGGTAGCTACACG 57.003 36.000 24.75 10.29 32.49 4.49
1878 2271 3.916172 GCTACACGATTAAAGTCACACGA 59.084 43.478 0.00 0.00 0.00 4.35
1952 2345 4.584874 TGATTTTACATGGACGGTGACAT 58.415 39.130 0.00 0.00 0.00 3.06
2064 2457 3.367910 GGGTTTGACACTGCACAGAAAAA 60.368 43.478 4.31 0.00 0.00 1.94
2106 2499 6.749139 TGCAGTCTAACTGGATATGTGATAC 58.251 40.000 9.01 0.00 46.01 2.24
2247 2666 8.319057 ACTGAGGGAGTACATGATTTACATTA 57.681 34.615 0.00 0.00 32.66 1.90
2310 2729 6.201997 GGTTGAATAAGGCAATTTTCGTTGTT 59.798 34.615 0.00 0.00 0.00 2.83
2331 2750 5.825679 TGTTAGCATTGATATAAAACCGCCT 59.174 36.000 0.00 0.00 0.00 5.52
2344 2763 1.594293 CCGCCTATCGAACCGCAAT 60.594 57.895 0.00 0.00 41.67 3.56
2432 2851 5.336293 GGATACTATAACTCCACCTAACGGC 60.336 48.000 0.00 0.00 0.00 5.68
2677 3096 3.047796 GCGAAAGATGCATAAATGGCTG 58.952 45.455 0.00 0.00 0.00 4.85
2860 3279 2.747177 TGCTGGTATAGGTAGCACAGT 58.253 47.619 0.00 0.00 42.05 3.55
2969 3388 7.148188 CCATATTGCTTTCACCTTATATGCGAT 60.148 37.037 0.00 0.00 0.00 4.58
3276 4741 6.125029 AGTTTAGCCATCATGCTAGACAATT 58.875 36.000 13.86 0.00 46.12 2.32
3277 4742 7.282585 AGTTTAGCCATCATGCTAGACAATTA 58.717 34.615 13.86 0.00 46.12 1.40
3278 4743 7.227512 AGTTTAGCCATCATGCTAGACAATTAC 59.772 37.037 13.86 0.00 46.12 1.89
3279 4744 5.301835 AGCCATCATGCTAGACAATTACT 57.698 39.130 0.00 0.00 40.56 2.24
3280 4745 5.303971 AGCCATCATGCTAGACAATTACTC 58.696 41.667 0.00 0.00 40.56 2.59
3281 4746 4.453819 GCCATCATGCTAGACAATTACTCC 59.546 45.833 0.00 0.00 0.00 3.85
3282 4747 4.999950 CCATCATGCTAGACAATTACTCCC 59.000 45.833 0.00 0.00 0.00 4.30
3283 4748 5.221803 CCATCATGCTAGACAATTACTCCCT 60.222 44.000 0.00 0.00 0.00 4.20
3284 4749 5.537300 TCATGCTAGACAATTACTCCCTC 57.463 43.478 0.00 0.00 0.00 4.30
3285 4750 4.345257 TCATGCTAGACAATTACTCCCTCC 59.655 45.833 0.00 0.00 0.00 4.30
3286 4751 2.693591 TGCTAGACAATTACTCCCTCCG 59.306 50.000 0.00 0.00 0.00 4.63
3287 4752 2.694109 GCTAGACAATTACTCCCTCCGT 59.306 50.000 0.00 0.00 0.00 4.69
3288 4753 3.243468 GCTAGACAATTACTCCCTCCGTC 60.243 52.174 0.00 0.00 0.00 4.79
3289 4754 2.108970 AGACAATTACTCCCTCCGTCC 58.891 52.381 0.00 0.00 0.00 4.79
3290 4755 1.138464 GACAATTACTCCCTCCGTCCC 59.862 57.143 0.00 0.00 0.00 4.46
3291 4756 1.200519 CAATTACTCCCTCCGTCCCA 58.799 55.000 0.00 0.00 0.00 4.37
3292 4757 1.557832 CAATTACTCCCTCCGTCCCAA 59.442 52.381 0.00 0.00 0.00 4.12
3293 4758 1.961133 ATTACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
3294 4759 1.732117 TTACTCCCTCCGTCCCAAAA 58.268 50.000 0.00 0.00 0.00 2.44
3295 4760 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
3296 4761 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
3297 4762 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
3298 4763 2.026542 ACTCCCTCCGTCCCAAAATAAC 60.027 50.000 0.00 0.00 0.00 1.89
3299 4764 2.238898 CTCCCTCCGTCCCAAAATAACT 59.761 50.000 0.00 0.00 0.00 2.24
3300 4765 2.026636 TCCCTCCGTCCCAAAATAACTG 60.027 50.000 0.00 0.00 0.00 3.16
3301 4766 2.290705 CCCTCCGTCCCAAAATAACTGT 60.291 50.000 0.00 0.00 0.00 3.55
3302 4767 3.007635 CCTCCGTCCCAAAATAACTGTC 58.992 50.000 0.00 0.00 0.00 3.51
3303 4768 3.307480 CCTCCGTCCCAAAATAACTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
3304 4769 3.933332 CTCCGTCCCAAAATAACTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
3305 4770 3.325425 TCCGTCCCAAAATAACTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
3306 4771 4.069304 CCGTCCCAAAATAACTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
3307 4772 4.154195 CCGTCCCAAAATAACTGTCTCAAG 59.846 45.833 0.00 0.00 0.00 3.02
3308 4773 4.378459 CGTCCCAAAATAACTGTCTCAAGC 60.378 45.833 0.00 0.00 0.00 4.01
3309 4774 4.762251 GTCCCAAAATAACTGTCTCAAGCT 59.238 41.667 0.00 0.00 0.00 3.74
3310 4775 5.241728 GTCCCAAAATAACTGTCTCAAGCTT 59.758 40.000 0.00 0.00 0.00 3.74
3311 4776 5.241506 TCCCAAAATAACTGTCTCAAGCTTG 59.758 40.000 20.81 20.81 0.00 4.01
3312 4777 5.464168 CCAAAATAACTGTCTCAAGCTTGG 58.536 41.667 25.73 16.25 0.00 3.61
3313 4778 5.010012 CCAAAATAACTGTCTCAAGCTTGGT 59.990 40.000 25.73 12.63 0.00 3.67
3314 4779 6.206634 CCAAAATAACTGTCTCAAGCTTGGTA 59.793 38.462 25.73 11.73 0.00 3.25
3315 4780 6.803154 AAATAACTGTCTCAAGCTTGGTAC 57.197 37.500 25.73 21.97 0.00 3.34
3316 4781 3.838244 AACTGTCTCAAGCTTGGTACA 57.162 42.857 25.73 24.78 0.00 2.90
3349 4814 7.723324 ACTAAAGCTAGTACAAAGTTGAGACA 58.277 34.615 0.00 0.00 36.56 3.41
3350 4815 6.846325 AAAGCTAGTACAAAGTTGAGACAC 57.154 37.500 0.00 0.00 0.00 3.67
3351 4816 5.793030 AGCTAGTACAAAGTTGAGACACT 57.207 39.130 0.00 0.00 0.00 3.55
3352 4817 6.163135 AGCTAGTACAAAGTTGAGACACTT 57.837 37.500 0.00 0.00 38.74 3.16
3353 4818 7.286215 AGCTAGTACAAAGTTGAGACACTTA 57.714 36.000 0.00 0.00 35.87 2.24
3354 4819 7.897864 AGCTAGTACAAAGTTGAGACACTTAT 58.102 34.615 0.00 0.00 35.87 1.73
3355 4820 8.368668 AGCTAGTACAAAGTTGAGACACTTATT 58.631 33.333 0.00 0.00 35.87 1.40
3356 4821 8.989980 GCTAGTACAAAGTTGAGACACTTATTT 58.010 33.333 0.00 0.00 35.87 1.40
3359 4824 8.621286 AGTACAAAGTTGAGACACTTATTTTGG 58.379 33.333 0.00 0.00 35.87 3.28
3360 4825 6.805713 ACAAAGTTGAGACACTTATTTTGGG 58.194 36.000 0.00 0.00 35.87 4.12
3361 4826 6.605594 ACAAAGTTGAGACACTTATTTTGGGA 59.394 34.615 0.00 0.00 35.87 4.37
3362 4827 6.635030 AAGTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
3363 4828 5.690865 AGTTGAGACACTTATTTTGGGACA 58.309 37.500 0.00 0.00 0.00 4.02
3364 4829 5.765182 AGTTGAGACACTTATTTTGGGACAG 59.235 40.000 0.00 0.00 42.39 3.51
3365 4830 5.560722 TGAGACACTTATTTTGGGACAGA 57.439 39.130 0.00 0.00 42.39 3.41
3366 4831 5.551233 TGAGACACTTATTTTGGGACAGAG 58.449 41.667 0.00 0.00 42.39 3.35
3367 4832 4.911390 AGACACTTATTTTGGGACAGAGG 58.089 43.478 0.00 0.00 42.39 3.69
3368 4833 4.010349 GACACTTATTTTGGGACAGAGGG 58.990 47.826 0.00 0.00 42.39 4.30
3369 4834 3.655777 ACACTTATTTTGGGACAGAGGGA 59.344 43.478 0.00 0.00 42.39 4.20
3370 4835 4.263506 ACACTTATTTTGGGACAGAGGGAG 60.264 45.833 0.00 0.00 42.39 4.30
3384 4849 5.892348 ACAGAGGGAGTATTTTCCAACATT 58.108 37.500 0.00 0.00 39.09 2.71
3737 5210 2.417719 AGTACCTTCTTTTGCTGCTCG 58.582 47.619 0.00 0.00 0.00 5.03
3763 5236 4.082026 CCTTTGGGATGACAGTTCCATTTC 60.082 45.833 0.00 0.00 34.77 2.17
3833 5306 6.994421 TCTACTCTTATGGTGATATGCCAA 57.006 37.500 0.31 0.00 39.72 4.52
3846 5319 6.096846 GGTGATATGCCAACATTTAACTCCTT 59.903 38.462 0.00 0.00 37.74 3.36
4128 5601 4.935702 TCTGTTTGGCTGAATTCAACAAG 58.064 39.130 18.83 11.75 0.00 3.16
4165 5641 7.199541 AGAAAACTTCATCACAGATTGTCAG 57.800 36.000 0.00 0.00 0.00 3.51
4244 5720 4.789802 GCTTTTCTTCACCCTGTTTTCTCG 60.790 45.833 0.00 0.00 0.00 4.04
4334 5810 4.654262 GGAGTTCAGATTGTGGAGGGTATA 59.346 45.833 0.00 0.00 0.00 1.47
4345 5821 2.696707 TGGAGGGTATATTGTCGTGACC 59.303 50.000 0.00 0.00 0.00 4.02
4468 5945 3.564511 CCTGGCAACGTCTTGTATTTTG 58.435 45.455 0.00 0.00 42.51 2.44
4489 5966 2.625314 GGAACGGGGTAGTAGTATGGAC 59.375 54.545 0.00 0.00 0.00 4.02
4492 5969 3.711863 ACGGGGTAGTAGTATGGACAAA 58.288 45.455 0.00 0.00 0.00 2.83
4493 5970 3.448660 ACGGGGTAGTAGTATGGACAAAC 59.551 47.826 0.00 0.00 0.00 2.93
4494 5971 3.448301 CGGGGTAGTAGTATGGACAAACA 59.552 47.826 0.00 0.00 0.00 2.83
4495 5972 4.100498 CGGGGTAGTAGTATGGACAAACAT 59.900 45.833 0.00 0.00 34.90 2.71
4496 5973 5.365619 GGGGTAGTAGTATGGACAAACATG 58.634 45.833 0.00 0.00 32.39 3.21
4497 5974 5.104652 GGGGTAGTAGTATGGACAAACATGT 60.105 44.000 0.00 0.00 32.39 3.21
4498 5975 6.047231 GGGTAGTAGTATGGACAAACATGTC 58.953 44.000 0.00 0.36 38.04 3.06
4499 5976 6.127140 GGGTAGTAGTATGGACAAACATGTCT 60.127 42.308 0.00 0.00 38.74 3.41
4500 5977 6.757010 GGTAGTAGTATGGACAAACATGTCTG 59.243 42.308 0.00 0.00 38.74 3.51
4501 5978 6.605471 AGTAGTATGGACAAACATGTCTGA 57.395 37.500 6.08 0.00 38.74 3.27
4502 5979 7.004555 AGTAGTATGGACAAACATGTCTGAA 57.995 36.000 6.08 0.00 38.74 3.02
4503 5980 7.099764 AGTAGTATGGACAAACATGTCTGAAG 58.900 38.462 6.08 0.00 38.74 3.02
4504 5981 4.697352 AGTATGGACAAACATGTCTGAAGC 59.303 41.667 6.08 0.00 38.74 3.86
4505 5982 2.229792 TGGACAAACATGTCTGAAGCC 58.770 47.619 6.08 5.00 38.74 4.35
4506 5983 1.541588 GGACAAACATGTCTGAAGCCC 59.458 52.381 6.08 0.00 38.74 5.19
4507 5984 2.229792 GACAAACATGTCTGAAGCCCA 58.770 47.619 6.08 0.00 36.01 5.36
4508 5985 2.622942 GACAAACATGTCTGAAGCCCAA 59.377 45.455 6.08 0.00 36.01 4.12
4509 5986 2.362077 ACAAACATGTCTGAAGCCCAAC 59.638 45.455 6.08 0.00 0.00 3.77
4510 5987 2.361757 CAAACATGTCTGAAGCCCAACA 59.638 45.455 0.00 0.00 0.00 3.33
4511 5988 1.609208 ACATGTCTGAAGCCCAACAC 58.391 50.000 0.00 0.00 0.00 3.32
4512 5989 0.518636 CATGTCTGAAGCCCAACACG 59.481 55.000 0.00 0.00 0.00 4.49
4513 5990 0.606401 ATGTCTGAAGCCCAACACGG 60.606 55.000 0.00 0.00 0.00 4.94
4539 6016 4.220603 AAGGCCATGGCTTTGCTT 57.779 50.000 34.70 25.29 46.16 3.91
4540 6017 1.977685 AAGGCCATGGCTTTGCTTC 59.022 52.632 34.70 17.14 46.16 3.86
4541 6018 1.547472 AAGGCCATGGCTTTGCTTCC 61.547 55.000 34.70 16.38 46.16 3.46
4640 6129 3.418047 CCCTGTTTTAGATTTGGGTCGT 58.582 45.455 0.00 0.00 0.00 4.34
4648 6137 0.949105 GATTTGGGTCGTCAGTGCGT 60.949 55.000 6.81 0.00 0.00 5.24
4655 6145 1.947146 TCGTCAGTGCGTTCAACGG 60.947 57.895 12.81 0.00 42.82 4.44
4668 6158 3.463944 GTTCAACGGATCGACCCATATT 58.536 45.455 0.00 0.00 34.64 1.28
4679 6170 0.039035 ACCCATATTTGCCGTGTGGT 59.961 50.000 0.00 0.00 37.67 4.16
4692 6183 4.008933 GTGGTCAGCTGGCCGTCT 62.009 66.667 31.24 0.00 44.44 4.18
4707 6198 6.576662 TGGCCGTCTTATTTCAACAAATAA 57.423 33.333 0.00 1.12 40.63 1.40
4809 6320 7.430441 ACAAGCCGAATACAAGTAAAAATGTT 58.570 30.769 0.00 0.00 0.00 2.71
4875 6387 5.536161 GGTTGCCAACATGAGTCCATATATT 59.464 40.000 10.18 0.00 0.00 1.28
4950 6462 6.896860 TCATGATGGAATTGGGTGAACTATTT 59.103 34.615 0.00 0.00 0.00 1.40
4951 6463 8.058235 TCATGATGGAATTGGGTGAACTATTTA 58.942 33.333 0.00 0.00 0.00 1.40
4952 6464 8.694540 CATGATGGAATTGGGTGAACTATTTAA 58.305 33.333 0.00 0.00 0.00 1.52
4953 6465 8.657387 TGATGGAATTGGGTGAACTATTTAAA 57.343 30.769 0.00 0.00 0.00 1.52
4954 6466 8.527810 TGATGGAATTGGGTGAACTATTTAAAC 58.472 33.333 0.00 0.00 0.00 2.01
4955 6467 8.664669 ATGGAATTGGGTGAACTATTTAAACT 57.335 30.769 0.00 0.00 0.00 2.66
4956 6468 8.485578 TGGAATTGGGTGAACTATTTAAACTT 57.514 30.769 0.00 0.00 0.00 2.66
5101 6617 1.507140 TCACCTCCCACAGTTTCTGT 58.493 50.000 0.00 0.00 46.51 3.41
5150 6666 1.228367 ATGCCCCATCGAGATTGCC 60.228 57.895 0.00 0.00 0.00 4.52
5233 6751 2.558795 CTCTTCTCTTCGACAGGGTTGA 59.441 50.000 0.00 0.00 0.00 3.18
5251 6769 6.553100 AGGGTTGAGGATTGTTTTGACAATAA 59.447 34.615 4.89 0.00 40.08 1.40
5290 6808 9.924010 GATAGATATAGTCACCCAGGTAGTATT 57.076 37.037 0.00 0.00 0.00 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 3.077556 GCCGCCTCCTCTTCCTCA 61.078 66.667 0.00 0.00 0.00 3.86
47 60 0.530870 GAGAGGGCAATGGTCTACGC 60.531 60.000 0.00 0.00 0.00 4.42
48 61 0.105039 GGAGAGGGCAATGGTCTACG 59.895 60.000 0.00 0.00 0.00 3.51
49 62 0.105039 CGGAGAGGGCAATGGTCTAC 59.895 60.000 0.00 0.00 0.00 2.59
50 63 1.686325 GCGGAGAGGGCAATGGTCTA 61.686 60.000 0.00 0.00 0.00 2.59
51 64 3.036429 GCGGAGAGGGCAATGGTCT 62.036 63.158 0.00 0.00 0.00 3.85
52 65 2.514824 GCGGAGAGGGCAATGGTC 60.515 66.667 0.00 0.00 0.00 4.02
53 66 4.473520 CGCGGAGAGGGCAATGGT 62.474 66.667 0.00 0.00 0.00 3.55
176 208 2.649349 CTCGCGCACTACTCTCGC 60.649 66.667 8.75 0.00 44.76 5.03
179 211 2.701780 CCCACTCGCGCACTACTCT 61.702 63.158 8.75 0.00 0.00 3.24
284 316 4.421479 CTCGCCCTGACGACGCTT 62.421 66.667 0.00 0.00 37.09 4.68
448 510 3.250323 CGGTGAGCGTCGATGCAG 61.250 66.667 30.02 12.48 37.31 4.41
449 511 3.743636 TCGGTGAGCGTCGATGCA 61.744 61.111 30.02 9.03 37.31 3.96
450 512 3.248171 GTCGGTGAGCGTCGATGC 61.248 66.667 22.11 22.11 37.73 3.91
451 513 2.579787 GGTCGGTGAGCGTCGATG 60.580 66.667 3.30 0.00 37.73 3.84
452 514 3.823330 GGGTCGGTGAGCGTCGAT 61.823 66.667 3.30 0.00 37.73 3.59
574 654 0.623723 ATTAAAGCCGCCCAGGAAGA 59.376 50.000 0.00 0.00 45.00 2.87
583 663 8.652463 ACAACATTAATTAAACATTAAAGCCGC 58.348 29.630 1.21 0.00 0.00 6.53
642 732 1.011968 TCCATTTTGACGACGCGAGG 61.012 55.000 15.93 6.33 0.00 4.63
649 740 0.746563 GGCCCGATCCATTTTGACGA 60.747 55.000 0.00 0.00 0.00 4.20
697 789 1.736645 CATGAACGTCCGCTTCCGT 60.737 57.895 0.00 0.00 39.32 4.69
767 862 4.473520 CAACTCCAGCGGGCCGAT 62.474 66.667 33.44 24.23 0.00 4.18
776 871 2.087646 GCTCCCTTAAAGCAACTCCAG 58.912 52.381 0.00 0.00 39.61 3.86
792 887 1.060622 CGTACTCGTCGACTGCTCC 59.939 63.158 14.70 0.00 0.00 4.70
793 888 0.025256 CTCGTACTCGTCGACTGCTC 59.975 60.000 14.70 0.00 38.33 4.26
794 889 1.360194 CCTCGTACTCGTCGACTGCT 61.360 60.000 14.70 0.00 38.33 4.24
795 890 1.060622 CCTCGTACTCGTCGACTGC 59.939 63.158 14.70 0.00 38.33 4.40
796 891 0.369589 GTCCTCGTACTCGTCGACTG 59.630 60.000 14.70 8.85 38.33 3.51
797 892 0.739112 GGTCCTCGTACTCGTCGACT 60.739 60.000 14.70 0.00 36.86 4.18
798 893 1.016130 TGGTCCTCGTACTCGTCGAC 61.016 60.000 5.18 5.18 38.33 4.20
799 894 0.107993 ATGGTCCTCGTACTCGTCGA 60.108 55.000 0.00 0.00 38.33 4.20
800 895 0.027716 CATGGTCCTCGTACTCGTCG 59.972 60.000 0.00 0.00 38.33 5.12
801 896 0.248539 GCATGGTCCTCGTACTCGTC 60.249 60.000 0.00 0.00 38.33 4.20
802 897 0.680280 AGCATGGTCCTCGTACTCGT 60.680 55.000 0.00 0.00 38.33 4.18
803 898 0.248661 CAGCATGGTCCTCGTACTCG 60.249 60.000 0.00 0.00 38.55 4.18
804 899 0.818296 ACAGCATGGTCCTCGTACTC 59.182 55.000 0.00 0.00 43.62 2.59
805 900 1.267121 AACAGCATGGTCCTCGTACT 58.733 50.000 0.00 0.00 43.62 2.73
806 901 2.537401 GTAACAGCATGGTCCTCGTAC 58.463 52.381 0.00 0.00 43.62 3.67
807 902 1.133598 CGTAACAGCATGGTCCTCGTA 59.866 52.381 0.00 0.00 43.62 3.43
808 903 0.108804 CGTAACAGCATGGTCCTCGT 60.109 55.000 0.00 0.00 43.62 4.18
809 904 0.108804 ACGTAACAGCATGGTCCTCG 60.109 55.000 0.00 0.69 43.62 4.63
810 905 1.359848 CACGTAACAGCATGGTCCTC 58.640 55.000 0.00 0.00 43.62 3.71
811 906 0.673644 GCACGTAACAGCATGGTCCT 60.674 55.000 0.00 0.00 43.62 3.85
812 907 1.644786 GGCACGTAACAGCATGGTCC 61.645 60.000 0.00 0.00 43.62 4.46
813 908 1.794222 GGCACGTAACAGCATGGTC 59.206 57.895 0.00 0.00 43.62 4.02
814 909 3.981308 GGCACGTAACAGCATGGT 58.019 55.556 0.00 0.00 43.62 3.55
821 916 9.789759 AGTACCTATACTATCCGGCACGTAACA 62.790 44.444 0.00 0.00 45.62 2.41
822 917 7.512705 AGTACCTATACTATCCGGCACGTAAC 61.513 46.154 0.00 0.00 45.62 2.50
823 918 5.513094 AGTACCTATACTATCCGGCACGTAA 60.513 44.000 0.00 0.00 45.62 3.18
824 919 4.020218 AGTACCTATACTATCCGGCACGTA 60.020 45.833 0.00 0.00 45.62 3.57
825 920 3.244700 AGTACCTATACTATCCGGCACGT 60.245 47.826 0.00 0.00 45.62 4.49
826 921 3.126514 CAGTACCTATACTATCCGGCACG 59.873 52.174 0.00 0.00 46.34 5.34
827 922 4.077822 ACAGTACCTATACTATCCGGCAC 58.922 47.826 0.00 0.00 39.80 5.01
828 923 4.377762 ACAGTACCTATACTATCCGGCA 57.622 45.455 0.00 0.00 39.80 5.69
829 924 5.495640 AGTACAGTACCTATACTATCCGGC 58.504 45.833 7.13 0.00 39.80 6.13
830 925 6.939163 ACAAGTACAGTACCTATACTATCCGG 59.061 42.308 7.13 0.00 39.80 5.14
831 926 7.976135 ACAAGTACAGTACCTATACTATCCG 57.024 40.000 7.13 0.00 39.80 4.18
840 935 8.131100 GCGACATAATTACAAGTACAGTACCTA 58.869 37.037 7.13 0.00 0.00 3.08
841 936 6.976925 GCGACATAATTACAAGTACAGTACCT 59.023 38.462 7.13 0.00 0.00 3.08
842 937 6.075205 CGCGACATAATTACAAGTACAGTACC 60.075 42.308 0.00 0.00 0.00 3.34
843 938 6.075205 CCGCGACATAATTACAAGTACAGTAC 60.075 42.308 8.23 2.05 0.00 2.73
844 939 5.972973 CCGCGACATAATTACAAGTACAGTA 59.027 40.000 8.23 0.00 0.00 2.74
845 940 4.802039 CCGCGACATAATTACAAGTACAGT 59.198 41.667 8.23 0.00 0.00 3.55
846 941 4.802039 ACCGCGACATAATTACAAGTACAG 59.198 41.667 8.23 0.00 0.00 2.74
847 942 4.746729 ACCGCGACATAATTACAAGTACA 58.253 39.130 8.23 0.00 0.00 2.90
848 943 5.400485 CCTACCGCGACATAATTACAAGTAC 59.600 44.000 8.23 0.00 0.00 2.73
849 944 5.522456 CCTACCGCGACATAATTACAAGTA 58.478 41.667 8.23 0.00 0.00 2.24
850 945 4.365723 CCTACCGCGACATAATTACAAGT 58.634 43.478 8.23 0.00 0.00 3.16
851 946 3.183775 GCCTACCGCGACATAATTACAAG 59.816 47.826 8.23 0.00 0.00 3.16
852 947 3.125316 GCCTACCGCGACATAATTACAA 58.875 45.455 8.23 0.00 0.00 2.41
853 948 2.363038 AGCCTACCGCGACATAATTACA 59.637 45.455 8.23 0.00 44.76 2.41
854 949 2.985139 GAGCCTACCGCGACATAATTAC 59.015 50.000 8.23 0.00 44.76 1.89
855 950 2.889045 AGAGCCTACCGCGACATAATTA 59.111 45.455 8.23 0.00 44.76 1.40
856 951 1.687123 AGAGCCTACCGCGACATAATT 59.313 47.619 8.23 0.00 44.76 1.40
857 952 1.329256 AGAGCCTACCGCGACATAAT 58.671 50.000 8.23 0.00 44.76 1.28
858 953 1.878088 CTAGAGCCTACCGCGACATAA 59.122 52.381 8.23 0.00 44.76 1.90
859 954 1.071228 TCTAGAGCCTACCGCGACATA 59.929 52.381 8.23 0.00 44.76 2.29
860 955 0.179026 TCTAGAGCCTACCGCGACAT 60.179 55.000 8.23 0.00 44.76 3.06
861 956 0.814410 CTCTAGAGCCTACCGCGACA 60.814 60.000 8.23 0.00 44.76 4.35
862 957 1.508808 CCTCTAGAGCCTACCGCGAC 61.509 65.000 14.73 0.00 44.76 5.19
863 958 1.227883 CCTCTAGAGCCTACCGCGA 60.228 63.158 14.73 0.00 44.76 5.87
864 959 0.606944 ATCCTCTAGAGCCTACCGCG 60.607 60.000 14.73 0.00 44.76 6.46
865 960 1.170442 GATCCTCTAGAGCCTACCGC 58.830 60.000 14.73 0.00 37.98 5.68
866 961 2.039216 TCTGATCCTCTAGAGCCTACCG 59.961 54.545 14.73 0.00 0.00 4.02
876 971 9.113838 GAAAATTTAGCACAATCTGATCCTCTA 57.886 33.333 0.00 0.00 0.00 2.43
902 997 3.874392 GGGTGATTTGATCCCTGTTTG 57.126 47.619 0.00 0.00 38.29 2.93
908 1003 3.815401 CACGATTAGGGTGATTTGATCCC 59.185 47.826 0.00 0.00 41.36 3.85
921 1016 3.594603 ACCTTCTGACACACGATTAGG 57.405 47.619 0.00 0.00 0.00 2.69
923 1018 4.594123 TCAACCTTCTGACACACGATTA 57.406 40.909 0.00 0.00 0.00 1.75
924 1019 3.469008 TCAACCTTCTGACACACGATT 57.531 42.857 0.00 0.00 0.00 3.34
926 1021 2.933906 GTTTCAACCTTCTGACACACGA 59.066 45.455 0.00 0.00 0.00 4.35
927 1022 2.675844 TGTTTCAACCTTCTGACACACG 59.324 45.455 0.00 0.00 32.46 4.49
928 1023 3.689649 ACTGTTTCAACCTTCTGACACAC 59.310 43.478 0.00 0.00 32.46 3.82
930 1025 3.938963 TCACTGTTTCAACCTTCTGACAC 59.061 43.478 0.00 0.00 0.00 3.67
942 1038 2.694628 AGCTGCCAAAATCACTGTTTCA 59.305 40.909 0.00 0.00 0.00 2.69
943 1039 3.054878 CAGCTGCCAAAATCACTGTTTC 58.945 45.455 0.00 0.00 0.00 2.78
1111 1208 1.506907 GGAGCTAGGGTTTTGGGGGT 61.507 60.000 0.00 0.00 0.00 4.95
1161 1258 1.072459 ACTGGGGGTAGGGTTTGGT 60.072 57.895 0.00 0.00 0.00 3.67
1196 1293 4.452733 CAGGTCGCGGGGAAGGAC 62.453 72.222 6.13 0.00 0.00 3.85
1355 1452 1.529244 AACCACAGGAAGCACAGCC 60.529 57.895 0.00 0.00 0.00 4.85
1357 1454 0.820891 AGCAACCACAGGAAGCACAG 60.821 55.000 7.09 0.00 0.00 3.66
1358 1455 1.102809 CAGCAACCACAGGAAGCACA 61.103 55.000 7.09 0.00 0.00 4.57
1359 1456 1.656441 CAGCAACCACAGGAAGCAC 59.344 57.895 7.09 0.00 0.00 4.40
1360 1457 2.195567 GCAGCAACCACAGGAAGCA 61.196 57.895 7.09 0.00 0.00 3.91
1722 2111 0.109319 CATACCAGGCAAAACGGCAC 60.109 55.000 0.00 0.00 44.47 5.01
1726 2115 3.879295 AGATGATCATACCAGGCAAAACG 59.121 43.478 8.54 0.00 0.00 3.60
1737 2126 4.024218 GTGAAGCCAAGCAGATGATCATAC 60.024 45.833 8.54 1.36 0.00 2.39
1800 2193 5.165676 CAATAAATCCCATTGGCATGATCG 58.834 41.667 0.00 0.00 31.07 3.69
1820 2213 3.839490 TCAATCCCTTCATGCAAACCAAT 59.161 39.130 0.00 0.00 0.00 3.16
1833 2226 7.816411 AGCTACCTTATGTAATTCAATCCCTT 58.184 34.615 0.00 0.00 0.00 3.95
1861 2254 4.026310 GTGTGTTCGTGTGACTTTAATCGT 60.026 41.667 0.00 0.00 0.00 3.73
1863 2256 5.652744 AGTGTGTTCGTGTGACTTTAATC 57.347 39.130 0.00 0.00 0.00 1.75
1878 2271 2.297701 CACCTAGCCACAAAGTGTGTT 58.702 47.619 7.55 0.00 46.45 3.32
1990 2383 5.444087 GGAACGTTTTGAAAGTGAAACAAGC 60.444 40.000 0.46 0.00 41.43 4.01
2106 2499 8.567948 ACAGGACAAAAATGATACAAGTACAAG 58.432 33.333 0.00 0.00 0.00 3.16
2118 2519 2.622942 GGTGCTCACAGGACAAAAATGA 59.377 45.455 2.21 0.00 38.40 2.57
2120 2521 2.949447 AGGTGCTCACAGGACAAAAAT 58.051 42.857 2.21 0.00 38.40 1.82
2159 2578 8.834465 CATATGGCTGCTATGGAAGATAAATAC 58.166 37.037 8.91 0.00 0.00 1.89
2310 2729 6.533723 CGATAGGCGGTTTTATATCAATGCTA 59.466 38.462 0.00 0.00 36.03 3.49
2331 2750 8.428186 AGAAAGTAAAATATTGCGGTTCGATA 57.572 30.769 0.00 0.00 30.82 2.92
2677 3096 6.869913 TGCTCAATCCAACAGAAAATGAAATC 59.130 34.615 0.00 0.00 0.00 2.17
2834 3253 6.837312 TGTGCTACCTATACCAGCAATAAAT 58.163 36.000 0.00 0.00 46.18 1.40
2860 3279 9.953697 ACAATAAACGCTTTACAGAATTGTTAA 57.046 25.926 0.00 0.00 38.76 2.01
3025 3444 3.760580 AGAGAACAAGTGCTACAAGCT 57.239 42.857 0.03 0.00 42.97 3.74
3276 4741 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
3277 4742 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
3278 4743 2.238898 AGTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
3279 4744 2.026636 CAGTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
3280 4745 2.290705 ACAGTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
3281 4746 3.007635 GACAGTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
3282 4747 3.933332 GAGACAGTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
3283 4748 3.325425 TGAGACAGTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
3284 4749 3.670625 TGAGACAGTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
3285 4750 4.378459 GCTTGAGACAGTTATTTTGGGACG 60.378 45.833 0.00 0.00 0.00 4.79
3286 4751 4.762251 AGCTTGAGACAGTTATTTTGGGAC 59.238 41.667 0.00 0.00 0.00 4.46
3287 4752 4.985538 AGCTTGAGACAGTTATTTTGGGA 58.014 39.130 0.00 0.00 0.00 4.37
3288 4753 5.464168 CAAGCTTGAGACAGTTATTTTGGG 58.536 41.667 22.31 0.00 0.00 4.12
3289 4754 5.010012 ACCAAGCTTGAGACAGTTATTTTGG 59.990 40.000 28.05 8.20 37.83 3.28
3290 4755 6.076981 ACCAAGCTTGAGACAGTTATTTTG 57.923 37.500 28.05 7.94 0.00 2.44
3291 4756 6.770785 TGTACCAAGCTTGAGACAGTTATTTT 59.229 34.615 28.05 1.17 0.00 1.82
3292 4757 6.296026 TGTACCAAGCTTGAGACAGTTATTT 58.704 36.000 28.05 1.82 0.00 1.40
3293 4758 5.865085 TGTACCAAGCTTGAGACAGTTATT 58.135 37.500 28.05 2.47 0.00 1.40
3294 4759 5.483685 TGTACCAAGCTTGAGACAGTTAT 57.516 39.130 28.05 3.13 0.00 1.89
3295 4760 4.948341 TGTACCAAGCTTGAGACAGTTA 57.052 40.909 28.05 6.24 0.00 2.24
3296 4761 3.838244 TGTACCAAGCTTGAGACAGTT 57.162 42.857 28.05 5.24 0.00 3.16
3297 4762 3.838244 TTGTACCAAGCTTGAGACAGT 57.162 42.857 28.05 17.82 0.00 3.55
3298 4763 5.695851 AAATTGTACCAAGCTTGAGACAG 57.304 39.130 28.05 12.76 0.00 3.51
3299 4764 5.359576 ACAAAATTGTACCAAGCTTGAGACA 59.640 36.000 28.05 24.59 40.16 3.41
3300 4765 5.831997 ACAAAATTGTACCAAGCTTGAGAC 58.168 37.500 28.05 22.47 40.16 3.36
3323 4788 8.853126 TGTCTCAACTTTGTACTAGCTTTAGTA 58.147 33.333 0.00 0.00 0.00 1.82
3324 4789 7.652507 GTGTCTCAACTTTGTACTAGCTTTAGT 59.347 37.037 0.00 0.00 0.00 2.24
3325 4790 7.868415 AGTGTCTCAACTTTGTACTAGCTTTAG 59.132 37.037 0.00 0.00 0.00 1.85
3326 4791 7.723324 AGTGTCTCAACTTTGTACTAGCTTTA 58.277 34.615 0.00 0.00 0.00 1.85
3327 4792 6.583562 AGTGTCTCAACTTTGTACTAGCTTT 58.416 36.000 0.00 0.00 0.00 3.51
3328 4793 6.163135 AGTGTCTCAACTTTGTACTAGCTT 57.837 37.500 0.00 0.00 0.00 3.74
3329 4794 5.793030 AGTGTCTCAACTTTGTACTAGCT 57.207 39.130 0.00 0.00 0.00 3.32
3330 4795 8.535690 AATAAGTGTCTCAACTTTGTACTAGC 57.464 34.615 0.00 0.00 40.77 3.42
3333 4798 8.621286 CCAAAATAAGTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
3334 4799 7.860872 CCCAAAATAAGTGTCTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
3335 4800 7.776030 TCCCAAAATAAGTGTCTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
3336 4801 6.605594 TCCCAAAATAAGTGTCTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
3337 4802 6.918022 GTCCCAAAATAAGTGTCTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
3338 4803 6.605594 TGTCCCAAAATAAGTGTCTCAACTTT 59.394 34.615 0.00 0.00 40.77 2.66
3339 4804 6.126409 TGTCCCAAAATAAGTGTCTCAACTT 58.874 36.000 0.00 0.00 42.89 2.66
3340 4805 5.690865 TGTCCCAAAATAAGTGTCTCAACT 58.309 37.500 0.00 0.00 0.00 3.16
3341 4806 5.763204 TCTGTCCCAAAATAAGTGTCTCAAC 59.237 40.000 0.00 0.00 0.00 3.18
3342 4807 5.935945 TCTGTCCCAAAATAAGTGTCTCAA 58.064 37.500 0.00 0.00 0.00 3.02
3343 4808 5.513094 CCTCTGTCCCAAAATAAGTGTCTCA 60.513 44.000 0.00 0.00 0.00 3.27
3344 4809 4.938226 CCTCTGTCCCAAAATAAGTGTCTC 59.062 45.833 0.00 0.00 0.00 3.36
3345 4810 4.263506 CCCTCTGTCCCAAAATAAGTGTCT 60.264 45.833 0.00 0.00 0.00 3.41
3346 4811 4.010349 CCCTCTGTCCCAAAATAAGTGTC 58.990 47.826 0.00 0.00 0.00 3.67
3347 4812 3.655777 TCCCTCTGTCCCAAAATAAGTGT 59.344 43.478 0.00 0.00 0.00 3.55
3348 4813 4.263506 ACTCCCTCTGTCCCAAAATAAGTG 60.264 45.833 0.00 0.00 0.00 3.16
3349 4814 3.916989 ACTCCCTCTGTCCCAAAATAAGT 59.083 43.478 0.00 0.00 0.00 2.24
3350 4815 4.576330 ACTCCCTCTGTCCCAAAATAAG 57.424 45.455 0.00 0.00 0.00 1.73
3351 4816 6.652205 AATACTCCCTCTGTCCCAAAATAA 57.348 37.500 0.00 0.00 0.00 1.40
3352 4817 6.652205 AAATACTCCCTCTGTCCCAAAATA 57.348 37.500 0.00 0.00 0.00 1.40
3353 4818 5.536497 AAATACTCCCTCTGTCCCAAAAT 57.464 39.130 0.00 0.00 0.00 1.82
3354 4819 5.321927 GAAAATACTCCCTCTGTCCCAAAA 58.678 41.667 0.00 0.00 0.00 2.44
3355 4820 4.263771 GGAAAATACTCCCTCTGTCCCAAA 60.264 45.833 0.00 0.00 0.00 3.28
3356 4821 3.265995 GGAAAATACTCCCTCTGTCCCAA 59.734 47.826 0.00 0.00 0.00 4.12
3357 4822 2.844348 GGAAAATACTCCCTCTGTCCCA 59.156 50.000 0.00 0.00 0.00 4.37
3358 4823 2.844348 TGGAAAATACTCCCTCTGTCCC 59.156 50.000 0.00 0.00 34.22 4.46
3359 4824 4.262617 GTTGGAAAATACTCCCTCTGTCC 58.737 47.826 0.00 0.00 34.22 4.02
3360 4825 4.906618 TGTTGGAAAATACTCCCTCTGTC 58.093 43.478 0.00 0.00 34.22 3.51
3361 4826 4.993705 TGTTGGAAAATACTCCCTCTGT 57.006 40.909 0.00 0.00 34.22 3.41
3362 4827 7.557719 ACATAATGTTGGAAAATACTCCCTCTG 59.442 37.037 0.00 0.00 34.22 3.35
3363 4828 7.557719 CACATAATGTTGGAAAATACTCCCTCT 59.442 37.037 0.00 0.00 34.22 3.69
3364 4829 7.682021 GCACATAATGTTGGAAAATACTCCCTC 60.682 40.741 0.00 0.00 34.22 4.30
3365 4830 6.096846 GCACATAATGTTGGAAAATACTCCCT 59.903 38.462 0.00 0.00 34.22 4.20
3366 4831 6.096846 AGCACATAATGTTGGAAAATACTCCC 59.903 38.462 0.00 0.00 34.22 4.30
3367 4832 7.100458 AGCACATAATGTTGGAAAATACTCC 57.900 36.000 0.00 0.00 35.88 3.85
3578 5051 7.688372 ACATCAGCAATCATACGTAGAAAAAG 58.312 34.615 0.08 0.00 0.00 2.27
3825 5298 7.480760 AACAAGGAGTTAAATGTTGGCATAT 57.519 32.000 0.00 0.00 39.09 1.78
3833 5306 7.639113 TCTGTCAAAACAAGGAGTTAAATGT 57.361 32.000 0.00 0.00 40.26 2.71
3846 5319 5.530543 TCACTGCATTGTATCTGTCAAAACA 59.469 36.000 3.77 0.00 0.00 2.83
4128 5601 3.643159 AGTTTTCTTGCGGATGAAACC 57.357 42.857 15.88 10.41 32.72 3.27
4165 5641 3.741476 CCGCAGAAGCAGGCAACC 61.741 66.667 0.00 0.00 42.27 3.77
4212 5688 1.801178 GTGAAGAAAAGCTCTCCACGG 59.199 52.381 0.00 0.00 31.02 4.94
4334 5810 1.374252 GCCTCACGGTCACGACAAT 60.374 57.895 0.00 0.00 44.60 2.71
4345 5821 0.032678 AAGTCAGTCACAGCCTCACG 59.967 55.000 0.00 0.00 0.00 4.35
4468 5945 2.625314 GTCCATACTACTACCCCGTTCC 59.375 54.545 0.00 0.00 0.00 3.62
4489 5966 2.361757 TGTTGGGCTTCAGACATGTTTG 59.638 45.455 10.06 10.06 0.00 2.93
4492 5969 1.609208 GTGTTGGGCTTCAGACATGT 58.391 50.000 0.00 0.00 0.00 3.21
4493 5970 0.518636 CGTGTTGGGCTTCAGACATG 59.481 55.000 0.00 0.00 0.00 3.21
4494 5971 0.606401 CCGTGTTGGGCTTCAGACAT 60.606 55.000 0.00 0.00 0.00 3.06
4495 5972 1.227823 CCGTGTTGGGCTTCAGACA 60.228 57.895 0.00 0.00 0.00 3.41
4496 5973 3.655481 CCGTGTTGGGCTTCAGAC 58.345 61.111 0.00 0.00 0.00 3.51
4512 5989 4.796495 ATGGCCTTCCGGTTCGCC 62.796 66.667 17.86 17.86 41.99 5.54
4513 5990 3.508840 CATGGCCTTCCGGTTCGC 61.509 66.667 3.32 0.47 34.14 4.70
4514 5991 2.824041 CCATGGCCTTCCGGTTCG 60.824 66.667 3.32 0.00 34.14 3.95
4515 5992 3.140814 GCCATGGCCTTCCGGTTC 61.141 66.667 27.24 0.00 34.14 3.62
4516 5993 2.730129 AAAGCCATGGCCTTCCGGTT 62.730 55.000 33.14 16.05 43.17 4.44
4517 5994 3.224007 AAAGCCATGGCCTTCCGGT 62.224 57.895 33.14 10.12 43.17 5.28
4518 5995 2.362889 AAAGCCATGGCCTTCCGG 60.363 61.111 33.14 0.00 43.17 5.14
4519 5996 2.887360 CAAAGCCATGGCCTTCCG 59.113 61.111 33.14 11.95 43.17 4.30
4520 5997 1.547472 AAGCAAAGCCATGGCCTTCC 61.547 55.000 33.14 17.60 43.17 3.46
4521 5998 0.108472 GAAGCAAAGCCATGGCCTTC 60.108 55.000 33.14 29.52 43.17 3.46
4522 5999 1.547472 GGAAGCAAAGCCATGGCCTT 61.547 55.000 33.14 26.63 43.17 4.35
4523 6000 1.986210 GGAAGCAAAGCCATGGCCT 60.986 57.895 33.14 19.03 43.17 5.19
4524 6001 2.580815 GGAAGCAAAGCCATGGCC 59.419 61.111 33.14 17.70 43.17 5.36
4525 6002 1.547472 AAGGGAAGCAAAGCCATGGC 61.547 55.000 30.12 30.12 42.33 4.40
4526 6003 1.753073 CTAAGGGAAGCAAAGCCATGG 59.247 52.381 7.63 7.63 0.00 3.66
4527 6004 2.686915 CTCTAAGGGAAGCAAAGCCATG 59.313 50.000 0.00 0.00 0.00 3.66
4528 6005 2.947695 GCTCTAAGGGAAGCAAAGCCAT 60.948 50.000 0.00 0.00 0.00 4.40
4529 6006 1.614317 GCTCTAAGGGAAGCAAAGCCA 60.614 52.381 0.00 0.00 0.00 4.75
4530 6007 1.098869 GCTCTAAGGGAAGCAAAGCC 58.901 55.000 0.00 0.00 0.00 4.35
4531 6008 1.826385 TGCTCTAAGGGAAGCAAAGC 58.174 50.000 0.00 0.00 34.08 3.51
4532 6009 3.416156 AGTTGCTCTAAGGGAAGCAAAG 58.584 45.455 11.00 0.00 46.72 2.77
4533 6010 3.412386 GAGTTGCTCTAAGGGAAGCAAA 58.588 45.455 11.00 0.00 46.72 3.68
4534 6011 2.290323 GGAGTTGCTCTAAGGGAAGCAA 60.290 50.000 5.73 5.73 43.77 3.91
4535 6012 1.279271 GGAGTTGCTCTAAGGGAAGCA 59.721 52.381 0.00 0.00 35.31 3.91
4536 6013 1.279271 TGGAGTTGCTCTAAGGGAAGC 59.721 52.381 0.00 0.00 0.00 3.86
4537 6014 3.339141 GTTGGAGTTGCTCTAAGGGAAG 58.661 50.000 0.00 0.00 31.92 3.46
4538 6015 2.289444 CGTTGGAGTTGCTCTAAGGGAA 60.289 50.000 6.93 0.00 34.71 3.97
4539 6016 1.275291 CGTTGGAGTTGCTCTAAGGGA 59.725 52.381 6.93 0.00 34.71 4.20
4540 6017 1.676014 CCGTTGGAGTTGCTCTAAGGG 60.676 57.143 15.71 15.71 45.28 3.95
4541 6018 1.676014 CCCGTTGGAGTTGCTCTAAGG 60.676 57.143 7.60 7.60 36.87 2.69
4640 6129 1.006825 CGATCCGTTGAACGCACTGA 61.007 55.000 12.95 4.48 40.91 3.41
4648 6137 3.830744 AATATGGGTCGATCCGTTGAA 57.169 42.857 16.19 0.00 37.00 2.69
4655 6145 1.531149 CACGGCAAATATGGGTCGATC 59.469 52.381 7.75 0.00 0.00 3.69
4668 6158 2.591429 CAGCTGACCACACGGCAA 60.591 61.111 8.42 0.00 43.72 4.52
4679 6170 1.277842 TGAAATAAGACGGCCAGCTGA 59.722 47.619 17.39 0.00 0.00 4.26
4692 6183 9.684448 TGCGAAATGAGTTATTTGTTGAAATAA 57.316 25.926 0.00 0.00 40.30 1.40
4707 6198 2.733026 GCAAAAGCAATGCGAAATGAGT 59.267 40.909 0.00 0.00 33.57 3.41
4715 6206 3.219981 GTTTGAATGCAAAAGCAATGCG 58.780 40.909 0.00 0.00 46.76 4.73
4809 6320 2.881513 TCGGCTTGCAAAACTATGTGAA 59.118 40.909 0.00 0.00 0.00 3.18
4875 6387 5.534207 ACTGCAAAATGATTTGGTTGAGA 57.466 34.783 0.00 0.00 44.93 3.27
4905 6417 5.850557 TGACATGTGTGATTGGAAAACTT 57.149 34.783 1.15 0.00 0.00 2.66
4950 6462 4.076394 AGGAGCGGCAATGTTTAAGTTTA 58.924 39.130 1.45 0.00 0.00 2.01
4951 6463 2.890945 AGGAGCGGCAATGTTTAAGTTT 59.109 40.909 1.45 0.00 0.00 2.66
4952 6464 2.488153 GAGGAGCGGCAATGTTTAAGTT 59.512 45.455 1.45 0.00 0.00 2.66
4953 6465 2.084546 GAGGAGCGGCAATGTTTAAGT 58.915 47.619 1.45 0.00 0.00 2.24
4954 6466 1.401905 GGAGGAGCGGCAATGTTTAAG 59.598 52.381 1.45 0.00 0.00 1.85
4955 6467 1.271652 TGGAGGAGCGGCAATGTTTAA 60.272 47.619 1.45 0.00 0.00 1.52
4956 6468 0.326595 TGGAGGAGCGGCAATGTTTA 59.673 50.000 1.45 0.00 0.00 2.01
5101 6617 3.910989 TCCTGCTAATACCTAGAGCACA 58.089 45.455 0.00 0.00 41.18 4.57
5150 6666 2.290367 TCGAGCATGTCTTTGGTGTTTG 59.710 45.455 0.00 0.00 0.00 2.93
5272 6790 6.021030 ACAAAGAATACTACCTGGGTGACTA 58.979 40.000 2.07 0.00 0.00 2.59
5273 6791 4.844655 ACAAAGAATACTACCTGGGTGACT 59.155 41.667 2.07 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.