Multiple sequence alignment - TraesCS3B01G224800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G224800 chr3B 100.000 4348 0 0 1 4348 306557374 306561721 0.000000e+00 8030.0
1 TraesCS3B01G224800 chr3B 89.412 510 36 4 3856 4348 771446723 771446215 1.030000e-175 627.0
2 TraesCS3B01G224800 chr3B 90.604 447 23 7 3919 4348 480371867 480371423 3.770000e-160 575.0
3 TraesCS3B01G224800 chr3B 83.065 248 21 10 3856 4095 707267776 707267542 5.700000e-49 206.0
4 TraesCS3B01G224800 chr3D 95.260 2173 66 13 1606 3750 254340329 254342492 0.000000e+00 3408.0
5 TraesCS3B01G224800 chr3D 93.508 878 29 8 563 1433 254339481 254340337 0.000000e+00 1280.0
6 TraesCS3B01G224800 chr3D 80.963 436 47 14 7 435 254338863 254339269 3.260000e-81 313.0
7 TraesCS3B01G224800 chr3D 95.238 42 0 2 3785 3826 254342697 254342736 1.010000e-06 65.8
8 TraesCS3B01G224800 chr3A 93.915 2235 84 20 1606 3826 334693981 334691785 0.000000e+00 3326.0
9 TraesCS3B01G224800 chr3A 94.055 841 26 8 608 1433 334694804 334693973 0.000000e+00 1254.0
10 TraesCS3B01G224800 chr3A 99.408 169 1 0 19 187 12424432 12424264 1.520000e-79 307.0
11 TraesCS3B01G224800 chr3A 98.266 173 3 0 19 191 80489270 80489098 1.960000e-78 303.0
12 TraesCS3B01G224800 chr3A 84.314 255 13 7 185 436 334701211 334700981 1.570000e-54 224.0
13 TraesCS3B01G224800 chr7B 90.927 518 22 4 3856 4348 748643155 748642638 0.000000e+00 673.0
14 TraesCS3B01G224800 chr7B 86.693 511 28 6 3856 4348 16712635 16712147 8.280000e-147 531.0
15 TraesCS3B01G224800 chr7B 98.266 173 2 1 1434 1605 717040783 717040611 7.070000e-78 302.0
16 TraesCS3B01G224800 chr5B 90.058 513 31 9 3856 4348 378910042 378910554 0.000000e+00 647.0
17 TraesCS3B01G224800 chr5B 89.370 508 37 12 3856 4348 614060338 614060843 1.330000e-174 623.0
18 TraesCS3B01G224800 chr5B 89.126 515 37 10 3851 4347 671979617 671980130 1.330000e-174 623.0
19 TraesCS3B01G224800 chr5B 88.824 510 39 5 3856 4348 476817898 476818406 1.030000e-170 610.0
20 TraesCS3B01G224800 chr5B 87.442 430 50 3 1755 2182 655712727 655712300 3.910000e-135 492.0
21 TraesCS3B01G224800 chr5B 99.422 173 0 1 1434 1605 343950926 343951098 3.260000e-81 313.0
22 TraesCS3B01G224800 chr5B 99.422 173 0 1 1434 1605 407048722 407048550 3.260000e-81 313.0
23 TraesCS3B01G224800 chr5B 97.688 173 2 2 1434 1605 409869605 409869434 3.290000e-76 296.0
24 TraesCS3B01G224800 chr5B 97.688 173 3 1 1434 1605 665001693 665001865 3.290000e-76 296.0
25 TraesCS3B01G224800 chr5B 89.216 102 11 0 1606 1707 89746035 89746136 1.270000e-25 128.0
26 TraesCS3B01G224800 chr5B 85.227 88 13 0 2778 2865 572380904 572380817 1.670000e-14 91.6
27 TraesCS3B01G224800 chr1B 89.432 511 32 10 3856 4348 622932995 622932489 3.690000e-175 625.0
28 TraesCS3B01G224800 chr1B 87.298 496 44 13 3856 4348 643908879 643909358 2.290000e-152 549.0
29 TraesCS3B01G224800 chr1B 88.217 314 23 4 3856 4162 87999740 88000046 3.200000e-96 363.0
30 TraesCS3B01G224800 chr1B 98.266 173 2 1 1434 1605 558516438 558516266 7.070000e-78 302.0
31 TraesCS3B01G224800 chr4B 88.998 509 37 8 3856 4348 145392718 145392213 2.870000e-171 612.0
32 TraesCS3B01G224800 chr4B 87.861 346 24 3 3856 4184 667407716 667408060 1.470000e-104 390.0
33 TraesCS3B01G224800 chr6B 90.487 452 26 2 3856 4291 521032715 521032265 8.110000e-162 580.0
34 TraesCS3B01G224800 chr6B 97.701 174 2 2 1434 1605 162867603 162867776 9.140000e-77 298.0
35 TraesCS3B01G224800 chr6B 94.624 186 9 1 1427 1611 213152560 213152375 1.980000e-73 287.0
36 TraesCS3B01G224800 chr6A 89.070 430 43 3 1755 2182 65556175 65555748 8.280000e-147 531.0
37 TraesCS3B01G224800 chr6A 87.213 305 35 4 1607 1908 48550395 48550698 1.160000e-90 344.0
38 TraesCS3B01G224800 chr6A 97.714 175 4 0 21 195 1830018 1829844 7.070000e-78 302.0
39 TraesCS3B01G224800 chr6A 95.288 191 6 3 7 196 596588270 596588458 2.540000e-77 300.0
40 TraesCS3B01G224800 chr6A 79.730 296 25 18 1145 1431 65556529 65556260 9.610000e-42 182.0
41 TraesCS3B01G224800 chrUn 86.444 509 33 14 3856 4348 27208199 27208687 3.850000e-145 525.0
42 TraesCS3B01G224800 chrUn 88.631 431 43 5 1755 2182 39185409 39185836 1.790000e-143 520.0
43 TraesCS3B01G224800 chrUn 79.264 299 28 16 1142 1431 39185052 39185325 1.240000e-40 178.0
44 TraesCS3B01G224800 chr2B 88.852 305 30 4 1606 1907 745508767 745509070 5.310000e-99 372.0
45 TraesCS3B01G224800 chr2B 98.266 173 2 1 1434 1605 256082988 256082816 7.070000e-78 302.0
46 TraesCS3B01G224800 chr4D 88.197 305 32 4 1607 1908 4290700 4290397 1.150000e-95 361.0
47 TraesCS3B01G224800 chr5A 100.000 167 0 0 20 186 362176895 362177061 4.220000e-80 309.0
48 TraesCS3B01G224800 chr5A 100.000 32 0 0 2819 2850 459771883 459771914 4.700000e-05 60.2
49 TraesCS3B01G224800 chr4A 99.412 170 1 0 20 189 464567601 464567432 4.220000e-80 309.0
50 TraesCS3B01G224800 chr4A 96.154 182 7 0 5 186 649026970 649027151 9.140000e-77 298.0
51 TraesCS3B01G224800 chr4A 90.385 104 10 0 1805 1908 524287367 524287470 2.110000e-28 137.0
52 TraesCS3B01G224800 chr4A 90.196 102 10 0 1606 1707 281593184 281593083 2.730000e-27 134.0
53 TraesCS3B01G224800 chr7A 98.266 173 3 0 16 188 344866591 344866763 1.960000e-78 303.0
54 TraesCS3B01G224800 chr7A 97.740 177 3 1 22 197 493942302 493942126 1.960000e-78 303.0
55 TraesCS3B01G224800 chr5D 89.216 102 11 0 1606 1707 462908673 462908774 1.270000e-25 128.0
56 TraesCS3B01G224800 chr5D 78.125 128 28 0 2777 2904 465023972 465023845 1.000000e-11 82.4
57 TraesCS3B01G224800 chr1D 89.216 102 11 0 1606 1707 235546766 235546665 1.270000e-25 128.0
58 TraesCS3B01G224800 chr7D 78.448 116 21 3 2789 2902 369135498 369135385 6.030000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G224800 chr3B 306557374 306561721 4347 False 8030.0 8030 100.00000 1 4348 1 chr3B.!!$F1 4347
1 TraesCS3B01G224800 chr3B 771446215 771446723 508 True 627.0 627 89.41200 3856 4348 1 chr3B.!!$R3 492
2 TraesCS3B01G224800 chr3D 254338863 254342736 3873 False 1266.7 3408 91.24225 7 3826 4 chr3D.!!$F1 3819
3 TraesCS3B01G224800 chr3A 334691785 334694804 3019 True 2290.0 3326 93.98500 608 3826 2 chr3A.!!$R4 3218
4 TraesCS3B01G224800 chr7B 748642638 748643155 517 True 673.0 673 90.92700 3856 4348 1 chr7B.!!$R3 492
5 TraesCS3B01G224800 chr5B 378910042 378910554 512 False 647.0 647 90.05800 3856 4348 1 chr5B.!!$F3 492
6 TraesCS3B01G224800 chr5B 614060338 614060843 505 False 623.0 623 89.37000 3856 4348 1 chr5B.!!$F5 492
7 TraesCS3B01G224800 chr5B 671979617 671980130 513 False 623.0 623 89.12600 3851 4347 1 chr5B.!!$F7 496
8 TraesCS3B01G224800 chr5B 476817898 476818406 508 False 610.0 610 88.82400 3856 4348 1 chr5B.!!$F4 492
9 TraesCS3B01G224800 chr1B 622932489 622932995 506 True 625.0 625 89.43200 3856 4348 1 chr1B.!!$R2 492
10 TraesCS3B01G224800 chr4B 145392213 145392718 505 True 612.0 612 88.99800 3856 4348 1 chr4B.!!$R1 492
11 TraesCS3B01G224800 chr6A 65555748 65556529 781 True 356.5 531 84.40000 1145 2182 2 chr6A.!!$R2 1037
12 TraesCS3B01G224800 chrUn 39185052 39185836 784 False 349.0 520 83.94750 1142 2182 2 chrUn.!!$F2 1040

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
823 944 0.036306 TCCAACCCGCTCTTTCTTCC 59.964 55.0 0.0 0.0 0.0 3.46 F
1180 1315 0.179094 CATACGCCTTTCCGCCACTA 60.179 55.0 0.0 0.0 0.0 2.74 F
1264 1399 0.179119 ATAACACACGCTCGTAGGGC 60.179 55.0 0.0 0.0 0.0 5.19 F
2632 2784 0.251354 AGCATTGTGAGAGACGCCAT 59.749 50.0 0.0 0.0 0.0 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2710 2862 0.324645 GGGACCAATCCTTGTGGCAT 60.325 55.000 0.0 0.0 45.46 4.40 R
2973 3129 2.093181 ACCGTCATTAGCATGGCAGTTA 60.093 45.455 0.0 0.0 34.30 2.24 R
3248 3412 0.855598 ATGGATGGTCCTTGGATGGG 59.144 55.000 0.0 0.0 37.46 4.00 R
3826 4166 0.460987 CTGAACGGGTGGAGATGCTC 60.461 60.000 0.0 0.0 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 4.892345 ACTACTCCCTCCGTTCCTAAATAC 59.108 45.833 0.00 0.00 0.00 1.89
49 50 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
52 53 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
57 58 7.010275 CGTTCCTAAATACTTGTCTTTCTAGGC 59.990 40.741 0.00 0.00 0.00 3.93
65 66 6.319141 ACTTGTCTTTCTAGGCATTTCAAC 57.681 37.500 0.00 0.00 35.56 3.18
66 67 5.827797 ACTTGTCTTTCTAGGCATTTCAACA 59.172 36.000 0.00 0.00 35.56 3.33
67 68 6.321181 ACTTGTCTTTCTAGGCATTTCAACAA 59.679 34.615 0.00 0.00 35.56 2.83
69 70 5.827797 TGTCTTTCTAGGCATTTCAACAAGT 59.172 36.000 0.00 0.00 29.10 3.16
70 71 6.145535 GTCTTTCTAGGCATTTCAACAAGTG 58.854 40.000 0.00 0.00 0.00 3.16
71 72 6.017109 GTCTTTCTAGGCATTTCAACAAGTGA 60.017 38.462 0.00 0.00 0.00 3.41
72 73 5.689383 TTCTAGGCATTTCAACAAGTGAC 57.311 39.130 0.00 0.00 35.39 3.67
74 75 6.109156 TCTAGGCATTTCAACAAGTGACTA 57.891 37.500 0.00 0.00 38.51 2.59
75 76 5.932303 TCTAGGCATTTCAACAAGTGACTAC 59.068 40.000 0.00 0.00 38.51 2.73
76 77 4.460263 AGGCATTTCAACAAGTGACTACA 58.540 39.130 0.00 0.00 35.84 2.74
77 78 5.072741 AGGCATTTCAACAAGTGACTACAT 58.927 37.500 0.00 0.00 35.84 2.29
78 79 6.237901 AGGCATTTCAACAAGTGACTACATA 58.762 36.000 0.00 0.00 35.84 2.29
79 80 6.149474 AGGCATTTCAACAAGTGACTACATAC 59.851 38.462 0.00 0.00 35.84 2.39
80 81 6.015504 GCATTTCAACAAGTGACTACATACG 58.984 40.000 0.00 0.00 35.39 3.06
82 83 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
83 84 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
85 86 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
86 87 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
88 89 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
89 90 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
90 91 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
93 94 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
94 95 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
96 97 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
97 98 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
98 99 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
100 101 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
101 102 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
103 104 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
208 210 6.916360 ATTAATCATGTCCAACCAAACACT 57.084 33.333 0.00 0.00 0.00 3.55
247 249 1.282875 GAGCGCAAGTCACCAAACC 59.717 57.895 11.47 0.00 41.68 3.27
251 253 1.021202 CGCAAGTCACCAAACCTCAA 58.979 50.000 0.00 0.00 0.00 3.02
254 256 2.930950 CAAGTCACCAAACCTCAAGGA 58.069 47.619 2.30 0.00 38.94 3.36
258 260 4.546674 AGTCACCAAACCTCAAGGAAAAT 58.453 39.130 2.30 0.00 38.94 1.82
269 271 6.249192 ACCTCAAGGAAAATTTCTTCCCTAG 58.751 40.000 5.65 2.02 45.28 3.02
270 272 6.183361 ACCTCAAGGAAAATTTCTTCCCTAGT 60.183 38.462 5.65 0.00 45.28 2.57
271 273 6.151817 CCTCAAGGAAAATTTCTTCCCTAGTG 59.848 42.308 5.65 1.03 45.28 2.74
272 274 5.476945 TCAAGGAAAATTTCTTCCCTAGTGC 59.523 40.000 5.65 0.00 45.28 4.40
273 275 4.998051 AGGAAAATTTCTTCCCTAGTGCA 58.002 39.130 5.65 0.00 45.28 4.57
274 276 5.012893 AGGAAAATTTCTTCCCTAGTGCAG 58.987 41.667 5.65 0.00 45.28 4.41
275 277 4.380973 GGAAAATTTCTTCCCTAGTGCAGC 60.381 45.833 5.65 0.00 39.26 5.25
276 278 2.426842 ATTTCTTCCCTAGTGCAGCC 57.573 50.000 0.00 0.00 0.00 4.85
277 279 1.064003 TTTCTTCCCTAGTGCAGCCA 58.936 50.000 0.00 0.00 0.00 4.75
278 280 0.615331 TTCTTCCCTAGTGCAGCCAG 59.385 55.000 0.00 0.00 0.00 4.85
279 281 0.252239 TCTTCCCTAGTGCAGCCAGA 60.252 55.000 0.00 0.00 0.00 3.86
280 282 0.107945 CTTCCCTAGTGCAGCCAGAC 60.108 60.000 0.00 0.00 0.00 3.51
281 283 0.545309 TTCCCTAGTGCAGCCAGACT 60.545 55.000 0.00 0.00 0.00 3.24
305 307 6.806751 TGTATGCAGTCTATCAAACTACCTC 58.193 40.000 0.00 0.00 0.00 3.85
306 308 6.607600 TGTATGCAGTCTATCAAACTACCTCT 59.392 38.462 0.00 0.00 0.00 3.69
317 319 4.887071 TCAAACTACCTCTGCAAAACATGT 59.113 37.500 0.00 0.00 0.00 3.21
319 321 5.852282 AACTACCTCTGCAAAACATGTTT 57.148 34.783 18.13 18.13 0.00 2.83
354 356 4.974645 ATCAGGTCCAACTAAGTCACAA 57.025 40.909 0.00 0.00 0.00 3.33
358 360 4.821805 CAGGTCCAACTAAGTCACAAATGT 59.178 41.667 0.00 0.00 0.00 2.71
399 401 1.264288 GAGGGCACAAAGTTTCTGTCG 59.736 52.381 0.00 0.00 0.00 4.35
421 423 0.105593 AGCTCATATGCACCCTCGTG 59.894 55.000 0.00 0.00 43.35 4.35
424 426 2.205074 CTCATATGCACCCTCGTGAAC 58.795 52.381 0.00 0.00 43.14 3.18
435 437 3.682858 ACCCTCGTGAACAAATATTGACG 59.317 43.478 0.00 0.00 31.94 4.35
440 499 5.466819 TCGTGAACAAATATTGACGTCTCT 58.533 37.500 17.92 6.40 32.38 3.10
456 515 6.037720 TGACGTCTCTTCATAAAAAGTTGCAA 59.962 34.615 17.92 0.00 0.00 4.08
463 522 6.985645 TCTTCATAAAAAGTTGCAAGCATGTT 59.014 30.769 0.00 0.00 0.00 2.71
464 523 6.528014 TCATAAAAAGTTGCAAGCATGTTG 57.472 33.333 0.00 0.00 0.00 3.33
465 524 6.279123 TCATAAAAAGTTGCAAGCATGTTGA 58.721 32.000 0.00 0.00 0.00 3.18
466 525 6.421501 TCATAAAAAGTTGCAAGCATGTTGAG 59.578 34.615 0.00 0.00 0.00 3.02
467 526 4.389890 AAAAGTTGCAAGCATGTTGAGA 57.610 36.364 0.00 0.00 0.00 3.27
468 527 4.389890 AAAGTTGCAAGCATGTTGAGAA 57.610 36.364 0.00 2.30 0.00 2.87
469 528 4.595762 AAGTTGCAAGCATGTTGAGAAT 57.404 36.364 0.00 0.00 0.00 2.40
470 529 4.595762 AGTTGCAAGCATGTTGAGAATT 57.404 36.364 0.00 0.00 0.00 2.17
471 530 4.553323 AGTTGCAAGCATGTTGAGAATTC 58.447 39.130 0.00 0.00 0.00 2.17
472 531 3.581024 TGCAAGCATGTTGAGAATTCC 57.419 42.857 0.65 0.00 0.00 3.01
473 532 3.159472 TGCAAGCATGTTGAGAATTCCT 58.841 40.909 0.65 0.00 0.00 3.36
474 533 3.192001 TGCAAGCATGTTGAGAATTCCTC 59.808 43.478 0.65 0.09 42.30 3.71
521 596 4.151883 ACTACCTACCAAACACGTCCTAA 58.848 43.478 0.00 0.00 0.00 2.69
531 606 6.015772 ACCAAACACGTCCTAATATGCTTTTT 60.016 34.615 0.00 0.00 0.00 1.94
539 614 6.747280 CGTCCTAATATGCTTTTTGGACTTTG 59.253 38.462 17.68 6.35 42.86 2.77
592 702 1.762419 TTTTTCGACTCGACCTCACG 58.238 50.000 0.00 0.00 34.89 4.35
593 703 0.946528 TTTTCGACTCGACCTCACGA 59.053 50.000 0.00 0.00 40.00 4.35
638 748 3.458163 GCATCCGACCCGTCTGGA 61.458 66.667 9.70 9.70 37.49 3.86
671 791 1.733399 GTGAGTGCCGGTTCTCGTC 60.733 63.158 18.11 12.29 37.11 4.20
673 793 3.264866 GAGTGCCGGTTCTCGTCGT 62.265 63.158 1.90 0.00 37.11 4.34
676 796 2.355481 GCCGGTTCTCGTCGTGTT 60.355 61.111 1.90 0.00 37.11 3.32
695 815 0.109532 TCTGCTCCGATCCGATCTCT 59.890 55.000 6.81 0.00 0.00 3.10
705 825 2.278206 CGATCTCTGTCGTGGCCG 60.278 66.667 0.00 0.00 36.88 6.13
712 832 2.434185 TGTCGTGGCCGAGCAATC 60.434 61.111 0.00 0.00 45.26 2.67
823 944 0.036306 TCCAACCCGCTCTTTCTTCC 59.964 55.000 0.00 0.00 0.00 3.46
889 1011 6.535508 GCAAGGTACGATCTGATTTAACTTCT 59.464 38.462 7.28 0.00 0.00 2.85
901 1023 8.201464 TCTGATTTAACTTCTTATATGCGTCCA 58.799 33.333 0.00 0.00 0.00 4.02
904 1026 7.534085 TTTAACTTCTTATATGCGTCCACAG 57.466 36.000 0.00 0.00 0.00 3.66
971 1094 4.511826 GGTCTATTTGGTAGATTCCTTGCG 59.488 45.833 0.00 0.00 41.33 4.85
1180 1315 0.179094 CATACGCCTTTCCGCCACTA 60.179 55.000 0.00 0.00 0.00 2.74
1181 1316 0.538118 ATACGCCTTTCCGCCACTAA 59.462 50.000 0.00 0.00 0.00 2.24
1209 1344 1.480954 GTCCTAGAGTCGGGCAAATCA 59.519 52.381 0.00 0.00 0.00 2.57
1219 1354 0.236711 GGGCAAATCATCAGCGATCG 59.763 55.000 11.69 11.69 0.00 3.69
1253 1388 3.425758 GGCGGTGCTAGAAAATAACACAC 60.426 47.826 0.00 0.00 32.89 3.82
1258 1393 3.366724 TGCTAGAAAATAACACACGCTCG 59.633 43.478 0.00 0.00 0.00 5.03
1259 1394 3.367025 GCTAGAAAATAACACACGCTCGT 59.633 43.478 0.00 0.00 0.00 4.18
1260 1395 4.560035 GCTAGAAAATAACACACGCTCGTA 59.440 41.667 0.00 0.00 0.00 3.43
1261 1396 5.275788 GCTAGAAAATAACACACGCTCGTAG 60.276 44.000 0.00 0.00 0.00 3.51
1262 1397 3.924686 AGAAAATAACACACGCTCGTAGG 59.075 43.478 0.00 0.00 0.00 3.18
1263 1398 2.288961 AATAACACACGCTCGTAGGG 57.711 50.000 0.00 0.00 0.00 3.53
1264 1399 0.179119 ATAACACACGCTCGTAGGGC 60.179 55.000 0.00 0.00 0.00 5.19
1424 1561 4.236935 GTGAATGCCAATTTGGTGTACAG 58.763 43.478 16.62 0.00 40.46 2.74
1425 1562 3.257873 TGAATGCCAATTTGGTGTACAGG 59.742 43.478 16.62 0.00 40.46 4.00
1426 1563 2.666272 TGCCAATTTGGTGTACAGGA 57.334 45.000 16.62 0.00 40.46 3.86
1427 1564 3.168035 TGCCAATTTGGTGTACAGGAT 57.832 42.857 16.62 0.00 40.46 3.24
1428 1565 3.505386 TGCCAATTTGGTGTACAGGATT 58.495 40.909 16.62 0.00 40.46 3.01
1429 1566 3.900601 TGCCAATTTGGTGTACAGGATTT 59.099 39.130 16.62 0.00 40.46 2.17
1430 1567 4.244862 GCCAATTTGGTGTACAGGATTTG 58.755 43.478 16.62 0.00 40.46 2.32
1431 1568 4.021544 GCCAATTTGGTGTACAGGATTTGA 60.022 41.667 16.62 0.00 40.46 2.69
1432 1569 5.469479 CCAATTTGGTGTACAGGATTTGAC 58.531 41.667 7.31 0.00 31.35 3.18
1433 1570 5.153513 CAATTTGGTGTACAGGATTTGACG 58.846 41.667 0.00 0.00 0.00 4.35
1434 1571 2.465860 TGGTGTACAGGATTTGACGG 57.534 50.000 0.00 0.00 0.00 4.79
1435 1572 1.002659 TGGTGTACAGGATTTGACGGG 59.997 52.381 0.00 0.00 0.00 5.28
1436 1573 1.276989 GGTGTACAGGATTTGACGGGA 59.723 52.381 0.00 0.00 0.00 5.14
1437 1574 2.618053 GTGTACAGGATTTGACGGGAG 58.382 52.381 0.00 0.00 0.00 4.30
1448 1585 4.867847 ACGGGAGTGCCTAGAACT 57.132 55.556 0.00 0.00 44.82 3.01
1449 1586 2.581074 ACGGGAGTGCCTAGAACTC 58.419 57.895 14.10 14.10 44.82 3.01
1450 1587 0.251653 ACGGGAGTGCCTAGAACTCA 60.252 55.000 20.54 0.39 44.86 3.41
1451 1588 1.115467 CGGGAGTGCCTAGAACTCAT 58.885 55.000 20.54 0.00 44.86 2.90
1452 1589 1.067821 CGGGAGTGCCTAGAACTCATC 59.932 57.143 20.54 13.62 44.86 2.92
1453 1590 2.393646 GGGAGTGCCTAGAACTCATCT 58.606 52.381 20.54 0.00 44.86 2.90
1454 1591 3.567397 GGGAGTGCCTAGAACTCATCTA 58.433 50.000 20.54 0.00 44.86 1.98
1489 1626 9.696917 ATAATTTGGTCTCATCACTTTGAAAAC 57.303 29.630 0.00 0.00 0.00 2.43
1490 1627 6.522625 TTTGGTCTCATCACTTTGAAAACA 57.477 33.333 0.00 0.00 0.00 2.83
1491 1628 6.522625 TTGGTCTCATCACTTTGAAAACAA 57.477 33.333 0.00 0.00 0.00 2.83
1492 1629 6.135290 TGGTCTCATCACTTTGAAAACAAG 57.865 37.500 0.00 0.00 0.00 3.16
1493 1630 5.885352 TGGTCTCATCACTTTGAAAACAAGA 59.115 36.000 0.00 0.00 0.00 3.02
1494 1631 6.376864 TGGTCTCATCACTTTGAAAACAAGAA 59.623 34.615 0.00 0.00 0.00 2.52
1495 1632 6.693113 GGTCTCATCACTTTGAAAACAAGAAC 59.307 38.462 0.00 0.00 0.00 3.01
1496 1633 7.250569 GTCTCATCACTTTGAAAACAAGAACA 58.749 34.615 0.00 0.00 0.00 3.18
1497 1634 7.430502 GTCTCATCACTTTGAAAACAAGAACAG 59.569 37.037 0.00 0.00 0.00 3.16
1498 1635 7.336679 TCTCATCACTTTGAAAACAAGAACAGA 59.663 33.333 0.00 0.00 0.00 3.41
1499 1636 7.999679 TCATCACTTTGAAAACAAGAACAGAT 58.000 30.769 0.00 0.00 0.00 2.90
1500 1637 9.119418 TCATCACTTTGAAAACAAGAACAGATA 57.881 29.630 0.00 0.00 0.00 1.98
1501 1638 9.173939 CATCACTTTGAAAACAAGAACAGATAC 57.826 33.333 0.00 0.00 0.00 2.24
1502 1639 8.275015 TCACTTTGAAAACAAGAACAGATACA 57.725 30.769 0.00 0.00 0.00 2.29
1503 1640 8.735315 TCACTTTGAAAACAAGAACAGATACAA 58.265 29.630 0.00 0.00 0.00 2.41
1504 1641 8.798153 CACTTTGAAAACAAGAACAGATACAAC 58.202 33.333 0.00 0.00 0.00 3.32
1505 1642 7.973944 ACTTTGAAAACAAGAACAGATACAACC 59.026 33.333 0.00 0.00 0.00 3.77
1506 1643 6.385649 TGAAAACAAGAACAGATACAACCC 57.614 37.500 0.00 0.00 0.00 4.11
1507 1644 5.888724 TGAAAACAAGAACAGATACAACCCA 59.111 36.000 0.00 0.00 0.00 4.51
1508 1645 5.767816 AAACAAGAACAGATACAACCCAC 57.232 39.130 0.00 0.00 0.00 4.61
1509 1646 4.431416 ACAAGAACAGATACAACCCACA 57.569 40.909 0.00 0.00 0.00 4.17
1510 1647 4.985538 ACAAGAACAGATACAACCCACAT 58.014 39.130 0.00 0.00 0.00 3.21
1511 1648 5.003804 ACAAGAACAGATACAACCCACATC 58.996 41.667 0.00 0.00 0.00 3.06
1512 1649 4.908601 AGAACAGATACAACCCACATCA 57.091 40.909 0.00 0.00 0.00 3.07
1513 1650 4.836825 AGAACAGATACAACCCACATCAG 58.163 43.478 0.00 0.00 0.00 2.90
1514 1651 2.991250 ACAGATACAACCCACATCAGC 58.009 47.619 0.00 0.00 0.00 4.26
1515 1652 2.305635 ACAGATACAACCCACATCAGCA 59.694 45.455 0.00 0.00 0.00 4.41
1516 1653 3.054139 ACAGATACAACCCACATCAGCAT 60.054 43.478 0.00 0.00 0.00 3.79
1517 1654 4.164030 ACAGATACAACCCACATCAGCATA 59.836 41.667 0.00 0.00 0.00 3.14
1518 1655 4.512944 CAGATACAACCCACATCAGCATAC 59.487 45.833 0.00 0.00 0.00 2.39
1519 1656 2.877097 ACAACCCACATCAGCATACA 57.123 45.000 0.00 0.00 0.00 2.29
1520 1657 2.436417 ACAACCCACATCAGCATACAC 58.564 47.619 0.00 0.00 0.00 2.90
1521 1658 1.398041 CAACCCACATCAGCATACACG 59.602 52.381 0.00 0.00 0.00 4.49
1522 1659 0.744414 ACCCACATCAGCATACACGC 60.744 55.000 0.00 0.00 0.00 5.34
1523 1660 0.744057 CCCACATCAGCATACACGCA 60.744 55.000 0.00 0.00 0.00 5.24
1524 1661 1.302366 CCACATCAGCATACACGCAT 58.698 50.000 0.00 0.00 0.00 4.73
1525 1662 1.262417 CCACATCAGCATACACGCATC 59.738 52.381 0.00 0.00 0.00 3.91
1526 1663 2.207590 CACATCAGCATACACGCATCT 58.792 47.619 0.00 0.00 0.00 2.90
1527 1664 2.610833 CACATCAGCATACACGCATCTT 59.389 45.455 0.00 0.00 0.00 2.40
1528 1665 3.803778 CACATCAGCATACACGCATCTTA 59.196 43.478 0.00 0.00 0.00 2.10
1529 1666 4.450080 CACATCAGCATACACGCATCTTAT 59.550 41.667 0.00 0.00 0.00 1.73
1530 1667 5.634859 CACATCAGCATACACGCATCTTATA 59.365 40.000 0.00 0.00 0.00 0.98
1531 1668 5.866092 ACATCAGCATACACGCATCTTATAG 59.134 40.000 0.00 0.00 0.00 1.31
1532 1669 4.237724 TCAGCATACACGCATCTTATAGC 58.762 43.478 0.00 0.00 0.00 2.97
1533 1670 3.989817 CAGCATACACGCATCTTATAGCA 59.010 43.478 0.00 0.00 0.00 3.49
1534 1671 4.628766 CAGCATACACGCATCTTATAGCAT 59.371 41.667 0.00 0.00 0.00 3.79
1535 1672 4.867047 AGCATACACGCATCTTATAGCATC 59.133 41.667 0.00 0.00 0.00 3.91
1536 1673 4.627035 GCATACACGCATCTTATAGCATCA 59.373 41.667 0.00 0.00 0.00 3.07
1537 1674 5.445142 GCATACACGCATCTTATAGCATCAC 60.445 44.000 0.00 0.00 0.00 3.06
1538 1675 4.058721 ACACGCATCTTATAGCATCACA 57.941 40.909 0.00 0.00 0.00 3.58
1539 1676 4.635223 ACACGCATCTTATAGCATCACAT 58.365 39.130 0.00 0.00 0.00 3.21
1540 1677 4.687948 ACACGCATCTTATAGCATCACATC 59.312 41.667 0.00 0.00 0.00 3.06
1541 1678 4.092529 CACGCATCTTATAGCATCACATCC 59.907 45.833 0.00 0.00 0.00 3.51
1542 1679 4.248058 CGCATCTTATAGCATCACATCCA 58.752 43.478 0.00 0.00 0.00 3.41
1543 1680 4.692155 CGCATCTTATAGCATCACATCCAA 59.308 41.667 0.00 0.00 0.00 3.53
1544 1681 5.353400 CGCATCTTATAGCATCACATCCAAT 59.647 40.000 0.00 0.00 0.00 3.16
1545 1682 6.552629 GCATCTTATAGCATCACATCCAATG 58.447 40.000 0.00 0.00 0.00 2.82
1546 1683 6.404403 GCATCTTATAGCATCACATCCAATGG 60.404 42.308 0.00 0.00 33.60 3.16
1547 1684 5.005740 TCTTATAGCATCACATCCAATGGC 58.994 41.667 0.00 0.00 33.60 4.40
1548 1685 3.520691 ATAGCATCACATCCAATGGCT 57.479 42.857 0.00 0.00 33.60 4.75
1549 1686 4.645863 ATAGCATCACATCCAATGGCTA 57.354 40.909 0.00 0.00 33.60 3.93
1550 1687 3.520691 AGCATCACATCCAATGGCTAT 57.479 42.857 0.00 0.00 33.60 2.97
1551 1688 4.645863 AGCATCACATCCAATGGCTATA 57.354 40.909 0.00 0.00 33.60 1.31
1552 1689 4.989277 AGCATCACATCCAATGGCTATAA 58.011 39.130 0.00 0.00 33.60 0.98
1553 1690 5.387788 AGCATCACATCCAATGGCTATAAA 58.612 37.500 0.00 0.00 33.60 1.40
1554 1691 5.834742 AGCATCACATCCAATGGCTATAAAA 59.165 36.000 0.00 0.00 33.60 1.52
1555 1692 6.015688 AGCATCACATCCAATGGCTATAAAAG 60.016 38.462 0.00 0.00 33.60 2.27
1556 1693 6.684686 CATCACATCCAATGGCTATAAAAGG 58.315 40.000 0.00 0.00 33.60 3.11
1557 1694 5.765510 TCACATCCAATGGCTATAAAAGGT 58.234 37.500 0.00 0.00 33.60 3.50
1558 1695 5.593909 TCACATCCAATGGCTATAAAAGGTG 59.406 40.000 0.00 0.00 33.60 4.00
1559 1696 5.593909 CACATCCAATGGCTATAAAAGGTGA 59.406 40.000 0.00 0.00 33.60 4.02
1560 1697 6.096705 CACATCCAATGGCTATAAAAGGTGAA 59.903 38.462 0.00 0.00 33.60 3.18
1561 1698 6.840705 ACATCCAATGGCTATAAAAGGTGAAT 59.159 34.615 0.00 0.00 33.60 2.57
1562 1699 6.713762 TCCAATGGCTATAAAAGGTGAATG 57.286 37.500 0.00 0.00 0.00 2.67
1563 1700 6.430864 TCCAATGGCTATAAAAGGTGAATGA 58.569 36.000 0.00 0.00 0.00 2.57
1564 1701 6.547141 TCCAATGGCTATAAAAGGTGAATGAG 59.453 38.462 0.00 0.00 0.00 2.90
1565 1702 6.547141 CCAATGGCTATAAAAGGTGAATGAGA 59.453 38.462 0.00 0.00 0.00 3.27
1566 1703 7.420800 CAATGGCTATAAAAGGTGAATGAGAC 58.579 38.462 0.00 0.00 0.00 3.36
1567 1704 5.437060 TGGCTATAAAAGGTGAATGAGACC 58.563 41.667 0.00 0.00 0.00 3.85
1568 1705 5.045213 TGGCTATAAAAGGTGAATGAGACCA 60.045 40.000 0.00 0.00 35.76 4.02
1569 1706 5.885912 GGCTATAAAAGGTGAATGAGACCAA 59.114 40.000 0.00 0.00 35.76 3.67
1570 1707 6.377146 GGCTATAAAAGGTGAATGAGACCAAA 59.623 38.462 0.00 0.00 35.76 3.28
1571 1708 7.251281 GCTATAAAAGGTGAATGAGACCAAAC 58.749 38.462 0.00 0.00 35.76 2.93
1572 1709 7.121315 GCTATAAAAGGTGAATGAGACCAAACT 59.879 37.037 0.00 0.00 35.76 2.66
1573 1710 9.667107 CTATAAAAGGTGAATGAGACCAAACTA 57.333 33.333 0.00 0.00 35.76 2.24
1577 1714 8.738645 AAAGGTGAATGAGACCAAACTATATC 57.261 34.615 0.00 0.00 35.76 1.63
1578 1715 7.682787 AGGTGAATGAGACCAAACTATATCT 57.317 36.000 0.00 0.00 35.76 1.98
1579 1716 7.731054 AGGTGAATGAGACCAAACTATATCTC 58.269 38.462 0.00 0.00 38.46 2.75
1816 1954 8.409371 TGAACTTGTTAACATAGCATTGTTTGA 58.591 29.630 9.56 0.00 40.25 2.69
2026 2165 9.912634 CTAAGACAAAGGCAAAGATTTATTCAA 57.087 29.630 0.00 0.00 0.00 2.69
2035 2176 9.807649 AGGCAAAGATTTATTCAATATTGTGTC 57.192 29.630 14.97 3.94 29.91 3.67
2054 2195 7.539712 TGTGTCAAGAGAAACTTCTTTACTG 57.460 36.000 0.00 0.00 37.73 2.74
2056 2197 5.527582 TGTCAAGAGAAACTTCTTTACTGCC 59.472 40.000 0.00 0.00 37.73 4.85
2064 2205 0.589223 TTCTTTACTGCCGGTTTGCG 59.411 50.000 1.90 0.00 0.00 4.85
2067 2208 1.519751 TTTACTGCCGGTTTGCGCAT 61.520 50.000 12.75 0.00 33.78 4.73
2080 2221 2.793946 CGCATTCCTGGGCTTTCG 59.206 61.111 0.00 0.00 0.00 3.46
2153 2294 3.063997 ACTTATCATTTCTTTCGGCGCTG 59.936 43.478 10.86 10.86 0.00 5.18
2362 2514 9.897744 CCAATATGTAAGTAAACCATTGCTATG 57.102 33.333 0.68 0.68 30.67 2.23
2451 2603 4.202430 ACGTAAAGAAAGAGGGTGGTCATT 60.202 41.667 0.00 0.00 0.00 2.57
2474 2626 4.733165 AGTTTTTGGGGTTAAGTAGTCCC 58.267 43.478 0.00 0.00 40.41 4.46
2496 2648 6.043411 CCCGATTAGTTTCTTTAGACTCAGG 58.957 44.000 0.00 0.00 0.00 3.86
2521 2673 7.121315 GGTCCTTCTGCTGTAAACAAAATAGAT 59.879 37.037 0.00 0.00 0.00 1.98
2575 2727 2.930040 CGGCGCTCTTTTGATAGAAGAA 59.070 45.455 7.64 0.00 33.10 2.52
2583 2735 2.018542 TTGATAGAAGAAACGGGCGG 57.981 50.000 0.00 0.00 0.00 6.13
2632 2784 0.251354 AGCATTGTGAGAGACGCCAT 59.749 50.000 0.00 0.00 0.00 4.40
2633 2785 0.376152 GCATTGTGAGAGACGCCATG 59.624 55.000 0.00 0.00 35.92 3.66
2648 2800 1.705186 GCCATGGCCTTCCTATTAGGA 59.295 52.381 27.24 8.42 37.66 2.94
2812 2964 3.219198 GCACCCCGGATTCATGCC 61.219 66.667 0.73 0.00 0.00 4.40
2854 3006 0.899717 ACCGCAATTTGGCCACTCAT 60.900 50.000 3.88 0.00 0.00 2.90
2973 3129 2.847327 ACTACATGCTCAACAGTGCT 57.153 45.000 0.00 0.00 0.00 4.40
2985 3141 2.864114 CAGTGCTAACTGCCATGCT 58.136 52.632 0.00 0.00 46.98 3.79
3023 3179 6.127101 TCCATGTGGTATATCCTACTATCCG 58.873 44.000 0.00 0.00 37.07 4.18
3248 3412 5.051891 CAATCCCTGCGATATTGGAAATC 57.948 43.478 0.00 0.00 0.00 2.17
3320 3484 4.377431 CGTGTGAAGTATCTGTTTTCTGCC 60.377 45.833 0.00 0.00 0.00 4.85
3450 3614 4.380843 TTCATACCATTCTGTTGTGGGT 57.619 40.909 0.00 0.00 39.86 4.51
3594 3762 5.163353 TGCCATAGACTTGATTCCGAATGTA 60.163 40.000 0.00 0.00 0.00 2.29
3719 3888 0.178995 TGGCTGCTGTTGAACCATGA 60.179 50.000 0.00 0.00 0.00 3.07
3750 3935 5.403897 TGAAACAGTTTTGCTAAGTCTCG 57.596 39.130 0.00 0.00 0.00 4.04
3756 3941 5.107065 ACAGTTTTGCTAAGTCTCGTTATGC 60.107 40.000 0.00 0.00 0.00 3.14
3760 3945 3.521560 TGCTAAGTCTCGTTATGCCTTG 58.478 45.455 0.00 0.00 0.00 3.61
3775 3961 3.078837 TGCCTTGGTCGAATTCCTTTAC 58.921 45.455 0.00 0.00 0.00 2.01
3829 4169 8.371770 TCTTCAGTTTTTCTTCTTCTTAGAGC 57.628 34.615 0.00 0.00 0.00 4.09
3830 4170 7.987458 TCTTCAGTTTTTCTTCTTCTTAGAGCA 59.013 33.333 0.00 0.00 0.00 4.26
3831 4171 8.682936 TTCAGTTTTTCTTCTTCTTAGAGCAT 57.317 30.769 0.00 0.00 0.00 3.79
3832 4172 8.316640 TCAGTTTTTCTTCTTCTTAGAGCATC 57.683 34.615 0.00 0.00 0.00 3.91
3843 4183 4.522971 GAGCATCTCCACCCGTTC 57.477 61.111 0.00 0.00 0.00 3.95
3844 4184 1.596934 GAGCATCTCCACCCGTTCA 59.403 57.895 0.00 0.00 0.00 3.18
3845 4185 0.460987 GAGCATCTCCACCCGTTCAG 60.461 60.000 0.00 0.00 0.00 3.02
3846 4186 2.109126 GCATCTCCACCCGTTCAGC 61.109 63.158 0.00 0.00 0.00 4.26
3847 4187 1.450312 CATCTCCACCCGTTCAGCC 60.450 63.158 0.00 0.00 0.00 4.85
3848 4188 2.670148 ATCTCCACCCGTTCAGCCC 61.670 63.158 0.00 0.00 0.00 5.19
3849 4189 4.410400 CTCCACCCGTTCAGCCCC 62.410 72.222 0.00 0.00 0.00 5.80
3895 4235 2.759973 CCTAGCTCCCAGCCACGA 60.760 66.667 0.00 0.00 43.77 4.35
3928 4271 1.714899 CCCTAGCCACGGCAAATTCG 61.715 60.000 11.35 0.00 44.88 3.34
3950 4294 1.227556 GTAGTCCATTCCCGCGCAT 60.228 57.895 8.75 0.00 0.00 4.73
3958 4302 2.095263 CCATTCCCGCGCATAAAATAGG 60.095 50.000 8.75 0.00 0.00 2.57
3972 4316 2.265467 AATAGGCGCCACAATCCGGT 62.265 55.000 31.54 6.76 0.00 5.28
4048 4395 4.760047 AGGACGGAAGCGCGCATT 62.760 61.111 35.10 23.57 0.00 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 3.991683 AGGAACGGAGGGAGTAGTTAAT 58.008 45.455 0.00 0.00 0.00 1.40
43 44 6.317789 TGTTGAAATGCCTAGAAAGACAAG 57.682 37.500 0.00 0.00 0.00 3.16
49 50 5.827797 AGTCACTTGTTGAAATGCCTAGAAA 59.172 36.000 0.00 0.00 35.39 2.52
52 53 5.700832 TGTAGTCACTTGTTGAAATGCCTAG 59.299 40.000 0.00 0.00 35.39 3.02
57 58 6.367695 TCCGTATGTAGTCACTTGTTGAAATG 59.632 38.462 0.00 0.00 35.39 2.32
65 66 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
66 67 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
67 68 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
69 70 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
70 71 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
71 72 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
72 73 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
74 75 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
75 76 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
76 77 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
77 78 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
78 79 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
79 80 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
80 81 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
152 154 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
155 157 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
172 174 5.855045 ACATGATTAATACTCCCTCCGTTC 58.145 41.667 0.00 0.00 0.00 3.95
208 210 2.416747 GCTCAGTTGATGCACTACACA 58.583 47.619 0.00 0.00 0.00 3.72
224 226 2.734723 GTGACTTGCGCTCGCTCA 60.735 61.111 9.73 8.06 42.51 4.26
247 249 6.349694 GCACTAGGGAAGAAATTTTCCTTGAG 60.350 42.308 0.00 6.38 44.90 3.02
251 253 4.998051 TGCACTAGGGAAGAAATTTTCCT 58.002 39.130 0.00 8.18 44.90 3.36
254 256 3.511540 GGCTGCACTAGGGAAGAAATTTT 59.488 43.478 3.30 0.00 0.00 1.82
258 260 1.003580 CTGGCTGCACTAGGGAAGAAA 59.996 52.381 3.30 0.00 0.00 2.52
281 283 6.607600 AGAGGTAGTTTGATAGACTGCATACA 59.392 38.462 0.00 0.00 32.25 2.29
282 284 6.920758 CAGAGGTAGTTTGATAGACTGCATAC 59.079 42.308 0.00 0.00 32.25 2.39
283 285 6.461648 GCAGAGGTAGTTTGATAGACTGCATA 60.462 42.308 0.00 0.00 44.65 3.14
328 330 5.638234 GTGACTTAGTTGGACCTGATTGTAC 59.362 44.000 0.00 0.00 0.00 2.90
342 344 6.770785 TGCCTCTTTACATTTGTGACTTAGTT 59.229 34.615 0.00 0.00 0.00 2.24
375 377 1.217942 AGAAACTTTGTGCCCTCCCTT 59.782 47.619 0.00 0.00 0.00 3.95
376 378 0.853530 AGAAACTTTGTGCCCTCCCT 59.146 50.000 0.00 0.00 0.00 4.20
377 379 0.961753 CAGAAACTTTGTGCCCTCCC 59.038 55.000 0.00 0.00 0.00 4.30
378 380 1.609072 GACAGAAACTTTGTGCCCTCC 59.391 52.381 0.00 0.00 0.00 4.30
379 381 1.264288 CGACAGAAACTTTGTGCCCTC 59.736 52.381 0.00 0.00 0.00 4.30
380 382 1.308998 CGACAGAAACTTTGTGCCCT 58.691 50.000 0.00 0.00 0.00 5.19
399 401 0.948141 GAGGGTGCATATGAGCTCGC 60.948 60.000 9.64 6.81 40.06 5.03
435 437 6.208644 TGCTTGCAACTTTTTATGAAGAGAC 58.791 36.000 0.00 0.00 0.00 3.36
440 499 6.760298 TCAACATGCTTGCAACTTTTTATGAA 59.240 30.769 0.00 0.00 0.00 2.57
450 509 3.676646 GGAATTCTCAACATGCTTGCAAC 59.323 43.478 5.23 0.00 0.00 4.17
464 523 7.651808 TCTTGAACAAACATTGAGGAATTCTC 58.348 34.615 5.23 1.99 42.74 2.87
465 524 7.587037 TCTTGAACAAACATTGAGGAATTCT 57.413 32.000 5.23 0.00 0.00 2.40
466 525 8.647143 TTTCTTGAACAAACATTGAGGAATTC 57.353 30.769 0.00 0.00 0.00 2.17
467 526 9.447157 TTTTTCTTGAACAAACATTGAGGAATT 57.553 25.926 0.00 0.00 0.00 2.17
496 555 4.774200 AGGACGTGTTTGGTAGGTAGTATT 59.226 41.667 0.00 0.00 0.00 1.89
497 556 4.347607 AGGACGTGTTTGGTAGGTAGTAT 58.652 43.478 0.00 0.00 0.00 2.12
499 558 2.601905 AGGACGTGTTTGGTAGGTAGT 58.398 47.619 0.00 0.00 0.00 2.73
548 623 7.357429 ACACAAGTACTGTAGTAGGAGTTTT 57.643 36.000 0.00 0.00 36.10 2.43
549 624 6.973460 ACACAAGTACTGTAGTAGGAGTTT 57.027 37.500 0.00 0.00 36.10 2.66
550 625 6.973460 AACACAAGTACTGTAGTAGGAGTT 57.027 37.500 0.00 1.05 36.10 3.01
588 698 1.244816 ACTTCGGTCATGACTCGTGA 58.755 50.000 24.50 14.46 0.00 4.35
589 699 2.065993 AACTTCGGTCATGACTCGTG 57.934 50.000 24.50 21.05 0.00 4.35
590 700 2.814280 AAACTTCGGTCATGACTCGT 57.186 45.000 24.50 13.39 0.00 4.18
591 701 3.120649 GGAAAAACTTCGGTCATGACTCG 60.121 47.826 24.50 23.54 0.00 4.18
592 702 3.188667 GGGAAAAACTTCGGTCATGACTC 59.811 47.826 24.50 13.90 0.00 3.36
593 703 3.146847 GGGAAAAACTTCGGTCATGACT 58.853 45.455 24.50 2.05 0.00 3.41
594 704 2.228103 GGGGAAAAACTTCGGTCATGAC 59.772 50.000 17.91 17.91 0.00 3.06
671 791 1.874019 CGGATCGGAGCAGAACACG 60.874 63.158 0.00 0.00 0.00 4.49
673 793 0.385751 GATCGGATCGGAGCAGAACA 59.614 55.000 13.06 0.00 0.00 3.18
676 796 0.109532 AGAGATCGGATCGGAGCAGA 59.890 55.000 19.09 0.00 0.00 4.26
695 815 2.434185 GATTGCTCGGCCACGACA 60.434 61.111 2.24 0.00 45.59 4.35
705 825 0.744771 GGGAGGAACGTGGATTGCTC 60.745 60.000 0.00 0.00 44.05 4.26
712 832 2.359967 GGAGGAGGGAGGAACGTGG 61.360 68.421 0.00 0.00 0.00 4.94
823 944 2.202797 CAGGCACGGATCCAGACG 60.203 66.667 13.41 0.00 0.00 4.18
871 992 8.916654 CGCATATAAGAAGTTAAATCAGATCGT 58.083 33.333 0.00 0.00 0.00 3.73
889 1011 3.118775 ACAAGAGCTGTGGACGCATATAA 60.119 43.478 0.00 0.00 36.69 0.98
971 1094 0.879090 CTGTCAAAAACCTACCGGCC 59.121 55.000 0.00 0.00 0.00 6.13
1180 1315 1.405821 CGACTCTAGGACGATTGCCTT 59.594 52.381 0.00 0.00 36.96 4.35
1181 1316 1.025812 CGACTCTAGGACGATTGCCT 58.974 55.000 0.00 0.00 39.56 4.75
1209 1344 1.323271 ACACAGACCCGATCGCTGAT 61.323 55.000 22.67 10.90 33.94 2.90
1219 1354 1.375523 CACCGCCTAACACAGACCC 60.376 63.158 0.00 0.00 0.00 4.46
1263 1398 3.097921 ATTACCACGCCCCTACCGC 62.098 63.158 0.00 0.00 0.00 5.68
1264 1399 1.227438 CATTACCACGCCCCTACCG 60.227 63.158 0.00 0.00 0.00 4.02
1265 1400 1.069668 CTACATTACCACGCCCCTACC 59.930 57.143 0.00 0.00 0.00 3.18
1424 1561 0.539986 TAGGCACTCCCGTCAAATCC 59.460 55.000 0.00 0.00 41.75 3.01
1425 1562 1.480954 TCTAGGCACTCCCGTCAAATC 59.519 52.381 0.00 0.00 41.75 2.17
1426 1563 1.568504 TCTAGGCACTCCCGTCAAAT 58.431 50.000 0.00 0.00 41.75 2.32
1427 1564 1.001633 GTTCTAGGCACTCCCGTCAAA 59.998 52.381 0.00 0.00 41.75 2.69
1428 1565 0.606604 GTTCTAGGCACTCCCGTCAA 59.393 55.000 0.00 0.00 41.75 3.18
1429 1566 0.251653 AGTTCTAGGCACTCCCGTCA 60.252 55.000 0.00 0.00 41.75 4.35
1430 1567 0.456628 GAGTTCTAGGCACTCCCGTC 59.543 60.000 10.44 0.00 41.75 4.79
1431 1568 0.251653 TGAGTTCTAGGCACTCCCGT 60.252 55.000 16.20 0.00 40.12 5.28
1432 1569 1.067821 GATGAGTTCTAGGCACTCCCG 59.932 57.143 16.20 0.00 40.12 5.14
1433 1570 2.393646 AGATGAGTTCTAGGCACTCCC 58.606 52.381 16.20 10.39 40.12 4.30
1463 1600 9.696917 GTTTTCAAAGTGATGAGACCAAATTAT 57.303 29.630 0.00 0.00 0.00 1.28
1464 1601 8.690884 TGTTTTCAAAGTGATGAGACCAAATTA 58.309 29.630 0.00 0.00 0.00 1.40
1465 1602 7.555087 TGTTTTCAAAGTGATGAGACCAAATT 58.445 30.769 0.00 0.00 0.00 1.82
1466 1603 7.111247 TGTTTTCAAAGTGATGAGACCAAAT 57.889 32.000 0.00 0.00 0.00 2.32
1467 1604 6.522625 TGTTTTCAAAGTGATGAGACCAAA 57.477 33.333 0.00 0.00 0.00 3.28
1468 1605 6.376864 TCTTGTTTTCAAAGTGATGAGACCAA 59.623 34.615 0.00 0.00 39.47 3.67
1469 1606 5.885352 TCTTGTTTTCAAAGTGATGAGACCA 59.115 36.000 0.00 0.00 39.47 4.02
1470 1607 6.377327 TCTTGTTTTCAAAGTGATGAGACC 57.623 37.500 0.00 0.00 39.47 3.85
1471 1608 7.250569 TGTTCTTGTTTTCAAAGTGATGAGAC 58.749 34.615 0.00 0.00 39.47 3.36
1472 1609 7.336679 TCTGTTCTTGTTTTCAAAGTGATGAGA 59.663 33.333 0.00 0.00 39.47 3.27
1473 1610 7.475015 TCTGTTCTTGTTTTCAAAGTGATGAG 58.525 34.615 0.00 0.00 39.47 2.90
1474 1611 7.389803 TCTGTTCTTGTTTTCAAAGTGATGA 57.610 32.000 0.00 0.00 39.47 2.92
1475 1612 9.173939 GTATCTGTTCTTGTTTTCAAAGTGATG 57.826 33.333 0.00 0.00 39.47 3.07
1476 1613 8.902806 TGTATCTGTTCTTGTTTTCAAAGTGAT 58.097 29.630 0.00 0.00 39.47 3.06
1477 1614 8.275015 TGTATCTGTTCTTGTTTTCAAAGTGA 57.725 30.769 0.00 0.00 39.47 3.41
1478 1615 8.798153 GTTGTATCTGTTCTTGTTTTCAAAGTG 58.202 33.333 0.00 0.00 39.47 3.16
1479 1616 7.973944 GGTTGTATCTGTTCTTGTTTTCAAAGT 59.026 33.333 0.00 0.00 39.47 2.66
1480 1617 7.435192 GGGTTGTATCTGTTCTTGTTTTCAAAG 59.565 37.037 0.00 0.00 39.47 2.77
1481 1618 7.093727 TGGGTTGTATCTGTTCTTGTTTTCAAA 60.094 33.333 0.00 0.00 39.47 2.69
1482 1619 6.378564 TGGGTTGTATCTGTTCTTGTTTTCAA 59.621 34.615 0.00 0.00 38.21 2.69
1483 1620 5.888724 TGGGTTGTATCTGTTCTTGTTTTCA 59.111 36.000 0.00 0.00 0.00 2.69
1484 1621 6.183360 TGTGGGTTGTATCTGTTCTTGTTTTC 60.183 38.462 0.00 0.00 0.00 2.29
1485 1622 5.654650 TGTGGGTTGTATCTGTTCTTGTTTT 59.345 36.000 0.00 0.00 0.00 2.43
1486 1623 5.197451 TGTGGGTTGTATCTGTTCTTGTTT 58.803 37.500 0.00 0.00 0.00 2.83
1487 1624 4.787551 TGTGGGTTGTATCTGTTCTTGTT 58.212 39.130 0.00 0.00 0.00 2.83
1488 1625 4.431416 TGTGGGTTGTATCTGTTCTTGT 57.569 40.909 0.00 0.00 0.00 3.16
1489 1626 5.003160 TGATGTGGGTTGTATCTGTTCTTG 58.997 41.667 0.00 0.00 0.00 3.02
1490 1627 5.241403 TGATGTGGGTTGTATCTGTTCTT 57.759 39.130 0.00 0.00 0.00 2.52
1491 1628 4.836825 CTGATGTGGGTTGTATCTGTTCT 58.163 43.478 0.00 0.00 0.00 3.01
1492 1629 3.375299 GCTGATGTGGGTTGTATCTGTTC 59.625 47.826 0.00 0.00 0.00 3.18
1493 1630 3.244875 TGCTGATGTGGGTTGTATCTGTT 60.245 43.478 0.00 0.00 0.00 3.16
1494 1631 2.305635 TGCTGATGTGGGTTGTATCTGT 59.694 45.455 0.00 0.00 0.00 3.41
1495 1632 2.989909 TGCTGATGTGGGTTGTATCTG 58.010 47.619 0.00 0.00 0.00 2.90
1496 1633 3.939740 ATGCTGATGTGGGTTGTATCT 57.060 42.857 0.00 0.00 0.00 1.98
1497 1634 4.273480 GTGTATGCTGATGTGGGTTGTATC 59.727 45.833 0.00 0.00 0.00 2.24
1498 1635 4.199310 GTGTATGCTGATGTGGGTTGTAT 58.801 43.478 0.00 0.00 0.00 2.29
1499 1636 3.605634 GTGTATGCTGATGTGGGTTGTA 58.394 45.455 0.00 0.00 0.00 2.41
1500 1637 2.436417 GTGTATGCTGATGTGGGTTGT 58.564 47.619 0.00 0.00 0.00 3.32
1501 1638 1.398041 CGTGTATGCTGATGTGGGTTG 59.602 52.381 0.00 0.00 0.00 3.77
1502 1639 1.737838 CGTGTATGCTGATGTGGGTT 58.262 50.000 0.00 0.00 0.00 4.11
1503 1640 0.744414 GCGTGTATGCTGATGTGGGT 60.744 55.000 0.00 0.00 0.00 4.51
1504 1641 0.744057 TGCGTGTATGCTGATGTGGG 60.744 55.000 0.00 0.00 35.36 4.61
1505 1642 1.262417 GATGCGTGTATGCTGATGTGG 59.738 52.381 0.00 0.00 35.36 4.17
1506 1643 2.207590 AGATGCGTGTATGCTGATGTG 58.792 47.619 0.00 0.00 35.36 3.21
1507 1644 2.609427 AGATGCGTGTATGCTGATGT 57.391 45.000 0.00 0.00 35.36 3.06
1508 1645 5.220359 GCTATAAGATGCGTGTATGCTGATG 60.220 44.000 0.00 0.00 35.36 3.07
1509 1646 4.867047 GCTATAAGATGCGTGTATGCTGAT 59.133 41.667 0.00 0.00 35.36 2.90
1510 1647 4.237724 GCTATAAGATGCGTGTATGCTGA 58.762 43.478 0.00 0.00 35.36 4.26
1511 1648 3.989817 TGCTATAAGATGCGTGTATGCTG 59.010 43.478 0.00 0.00 35.36 4.41
1512 1649 4.257267 TGCTATAAGATGCGTGTATGCT 57.743 40.909 0.00 0.00 35.36 3.79
1513 1650 4.627035 TGATGCTATAAGATGCGTGTATGC 59.373 41.667 0.00 0.00 0.00 3.14
1514 1651 5.634859 TGTGATGCTATAAGATGCGTGTATG 59.365 40.000 0.00 0.00 0.00 2.39
1515 1652 5.783111 TGTGATGCTATAAGATGCGTGTAT 58.217 37.500 0.00 0.00 0.00 2.29
1516 1653 5.195001 TGTGATGCTATAAGATGCGTGTA 57.805 39.130 0.00 0.00 0.00 2.90
1517 1654 4.058721 TGTGATGCTATAAGATGCGTGT 57.941 40.909 0.00 0.00 0.00 4.49
1518 1655 4.092529 GGATGTGATGCTATAAGATGCGTG 59.907 45.833 0.00 0.00 0.00 5.34
1519 1656 4.248859 GGATGTGATGCTATAAGATGCGT 58.751 43.478 0.00 0.00 0.00 5.24
1520 1657 4.248058 TGGATGTGATGCTATAAGATGCG 58.752 43.478 0.00 0.00 0.00 4.73
1521 1658 6.404403 CCATTGGATGTGATGCTATAAGATGC 60.404 42.308 0.00 0.00 0.00 3.91
1522 1659 6.404403 GCCATTGGATGTGATGCTATAAGATG 60.404 42.308 6.95 0.00 0.00 2.90
1523 1660 5.651139 GCCATTGGATGTGATGCTATAAGAT 59.349 40.000 6.95 0.00 0.00 2.40
1524 1661 5.005740 GCCATTGGATGTGATGCTATAAGA 58.994 41.667 6.95 0.00 0.00 2.10
1525 1662 5.008331 AGCCATTGGATGTGATGCTATAAG 58.992 41.667 6.95 0.00 0.00 1.73
1526 1663 4.989277 AGCCATTGGATGTGATGCTATAA 58.011 39.130 6.95 0.00 0.00 0.98
1527 1664 4.645863 AGCCATTGGATGTGATGCTATA 57.354 40.909 6.95 0.00 0.00 1.31
1528 1665 3.520691 AGCCATTGGATGTGATGCTAT 57.479 42.857 6.95 0.00 0.00 2.97
1529 1666 4.645863 ATAGCCATTGGATGTGATGCTA 57.354 40.909 6.95 0.00 0.00 3.49
1530 1667 3.520691 ATAGCCATTGGATGTGATGCT 57.479 42.857 6.95 0.00 0.00 3.79
1531 1668 5.710513 TTTATAGCCATTGGATGTGATGC 57.289 39.130 6.95 0.00 0.00 3.91
1532 1669 6.266103 ACCTTTTATAGCCATTGGATGTGATG 59.734 38.462 6.95 0.00 0.00 3.07
1533 1670 6.266103 CACCTTTTATAGCCATTGGATGTGAT 59.734 38.462 6.95 0.00 0.00 3.06
1534 1671 5.593909 CACCTTTTATAGCCATTGGATGTGA 59.406 40.000 6.95 0.00 0.00 3.58
1535 1672 5.593909 TCACCTTTTATAGCCATTGGATGTG 59.406 40.000 6.95 2.95 0.00 3.21
1536 1673 5.765510 TCACCTTTTATAGCCATTGGATGT 58.234 37.500 6.95 0.10 0.00 3.06
1537 1674 6.713762 TTCACCTTTTATAGCCATTGGATG 57.286 37.500 6.95 0.00 0.00 3.51
1538 1675 7.068702 TCATTCACCTTTTATAGCCATTGGAT 58.931 34.615 6.95 1.78 0.00 3.41
1539 1676 6.430864 TCATTCACCTTTTATAGCCATTGGA 58.569 36.000 6.95 0.00 0.00 3.53
1540 1677 6.547141 TCTCATTCACCTTTTATAGCCATTGG 59.453 38.462 0.00 0.00 0.00 3.16
1541 1678 7.420800 GTCTCATTCACCTTTTATAGCCATTG 58.579 38.462 0.00 0.00 0.00 2.82
1542 1679 6.547510 GGTCTCATTCACCTTTTATAGCCATT 59.452 38.462 0.00 0.00 0.00 3.16
1543 1680 6.064717 GGTCTCATTCACCTTTTATAGCCAT 58.935 40.000 0.00 0.00 0.00 4.40
1544 1681 5.045213 TGGTCTCATTCACCTTTTATAGCCA 60.045 40.000 0.00 0.00 34.66 4.75
1545 1682 5.437060 TGGTCTCATTCACCTTTTATAGCC 58.563 41.667 0.00 0.00 34.66 3.93
1546 1683 7.121315 AGTTTGGTCTCATTCACCTTTTATAGC 59.879 37.037 0.00 0.00 34.66 2.97
1547 1684 8.567285 AGTTTGGTCTCATTCACCTTTTATAG 57.433 34.615 0.00 0.00 34.66 1.31
1551 1688 9.178758 GATATAGTTTGGTCTCATTCACCTTTT 57.821 33.333 0.00 0.00 34.66 2.27
1552 1689 8.552296 AGATATAGTTTGGTCTCATTCACCTTT 58.448 33.333 0.00 0.00 34.66 3.11
1553 1690 8.095452 AGATATAGTTTGGTCTCATTCACCTT 57.905 34.615 0.00 0.00 34.66 3.50
1554 1691 7.345653 TGAGATATAGTTTGGTCTCATTCACCT 59.654 37.037 0.16 0.00 41.40 4.00
1555 1692 7.500992 TGAGATATAGTTTGGTCTCATTCACC 58.499 38.462 0.16 0.00 41.40 4.02
1583 1720 5.483937 TCCCAGTTTTGCTAGAACTCATCTA 59.516 40.000 0.00 0.00 39.71 1.98
1584 1721 4.287067 TCCCAGTTTTGCTAGAACTCATCT 59.713 41.667 0.00 0.00 42.48 2.90
1585 1722 4.579869 TCCCAGTTTTGCTAGAACTCATC 58.420 43.478 0.00 0.00 35.26 2.92
1586 1723 4.640771 TCCCAGTTTTGCTAGAACTCAT 57.359 40.909 0.00 0.00 35.26 2.90
1587 1724 4.640771 ATCCCAGTTTTGCTAGAACTCA 57.359 40.909 0.00 0.00 35.26 3.41
1588 1725 5.473504 TCAAATCCCAGTTTTGCTAGAACTC 59.526 40.000 0.00 0.00 35.26 3.01
1589 1726 5.241728 GTCAAATCCCAGTTTTGCTAGAACT 59.758 40.000 0.00 0.00 37.82 3.01
1590 1727 5.009610 TGTCAAATCCCAGTTTTGCTAGAAC 59.990 40.000 0.00 0.00 34.73 3.01
1591 1728 5.136828 TGTCAAATCCCAGTTTTGCTAGAA 58.863 37.500 0.00 0.00 34.73 2.10
1592 1729 4.724399 TGTCAAATCCCAGTTTTGCTAGA 58.276 39.130 0.00 0.00 34.73 2.43
1593 1730 5.222631 GTTGTCAAATCCCAGTTTTGCTAG 58.777 41.667 0.00 0.00 34.73 3.42
1594 1731 4.261405 CGTTGTCAAATCCCAGTTTTGCTA 60.261 41.667 0.00 0.00 34.73 3.49
1595 1732 3.490761 CGTTGTCAAATCCCAGTTTTGCT 60.491 43.478 0.00 0.00 34.73 3.91
1596 1733 2.794350 CGTTGTCAAATCCCAGTTTTGC 59.206 45.455 0.00 0.00 34.73 3.68
1597 1734 4.300189 TCGTTGTCAAATCCCAGTTTTG 57.700 40.909 0.00 0.00 35.79 2.44
1598 1735 4.993029 TTCGTTGTCAAATCCCAGTTTT 57.007 36.364 0.00 0.00 0.00 2.43
1599 1736 4.993029 TTTCGTTGTCAAATCCCAGTTT 57.007 36.364 0.00 0.00 0.00 2.66
1600 1737 4.993029 TTTTCGTTGTCAAATCCCAGTT 57.007 36.364 0.00 0.00 0.00 3.16
1601 1738 6.642707 TTATTTTCGTTGTCAAATCCCAGT 57.357 33.333 0.00 0.00 0.00 4.00
1602 1739 7.598493 ACATTTATTTTCGTTGTCAAATCCCAG 59.402 33.333 0.00 0.00 0.00 4.45
1603 1740 7.437748 ACATTTATTTTCGTTGTCAAATCCCA 58.562 30.769 0.00 0.00 0.00 4.37
1604 1741 7.883229 ACATTTATTTTCGTTGTCAAATCCC 57.117 32.000 0.00 0.00 0.00 3.85
1647 1785 1.331075 GCGCTTTGCTTGTCAAAAACG 60.331 47.619 0.00 7.61 43.44 3.60
1868 2006 3.529533 TGTTGGCAACCATTCAACAAAG 58.470 40.909 26.31 0.00 44.94 2.77
2000 2139 9.912634 TTGAATAAATCTTTGCCTTTGTCTTAG 57.087 29.630 0.00 0.00 0.00 2.18
2035 2176 4.083802 CCGGCAGTAAAGAAGTTTCTCTTG 60.084 45.833 0.00 0.00 35.79 3.02
2054 2195 3.747976 AGGAATGCGCAAACCGGC 61.748 61.111 17.11 0.00 37.44 6.13
2056 2197 2.179018 CCAGGAATGCGCAAACCG 59.821 61.111 17.11 15.75 40.75 4.44
2064 2205 0.960364 TGACGAAAGCCCAGGAATGC 60.960 55.000 0.00 0.00 0.00 3.56
2067 2208 2.286365 ATTTGACGAAAGCCCAGGAA 57.714 45.000 0.00 0.00 0.00 3.36
2153 2294 2.549754 AGCAGCAACATAACAGACACAC 59.450 45.455 0.00 0.00 0.00 3.82
2238 2390 1.950216 TGTAAGATGGCGCACACAAAA 59.050 42.857 10.83 0.00 0.00 2.44
2239 2391 1.535028 CTGTAAGATGGCGCACACAAA 59.465 47.619 10.83 0.00 34.07 2.83
2240 2392 1.155889 CTGTAAGATGGCGCACACAA 58.844 50.000 10.83 0.00 34.07 3.33
2250 2402 6.019075 TGTTTCACTGTCGTTTCTGTAAGATG 60.019 38.462 0.00 0.00 46.36 2.90
2256 2408 3.857052 TCTGTTTCACTGTCGTTTCTGT 58.143 40.909 0.00 0.00 0.00 3.41
2451 2603 5.512921 CGGGACTACTTAACCCCAAAAACTA 60.513 44.000 0.00 0.00 40.43 2.24
2474 2626 6.752815 GGACCTGAGTCTAAAGAAACTAATCG 59.247 42.308 0.00 0.00 43.05 3.34
2496 2648 7.435068 TCTATTTTGTTTACAGCAGAAGGAC 57.565 36.000 0.00 0.00 0.00 3.85
2521 2673 2.045561 TTTGAGTTTCAACGGCCTCA 57.954 45.000 0.00 0.00 35.89 3.86
2556 2708 4.327024 CGTTTCTTCTATCAAAAGAGCGC 58.673 43.478 0.00 0.00 34.42 5.92
2557 2709 4.201724 CCCGTTTCTTCTATCAAAAGAGCG 60.202 45.833 0.00 0.00 34.42 5.03
2558 2710 4.437524 GCCCGTTTCTTCTATCAAAAGAGC 60.438 45.833 0.00 0.00 34.42 4.09
2583 2735 2.405172 GACAGTTTGGAACGAGAGGAC 58.595 52.381 0.00 0.00 36.23 3.85
2648 2800 6.119536 TCTCCGCCATAAAGTCATAAACATT 58.880 36.000 0.00 0.00 0.00 2.71
2658 2810 1.906574 TCAACCTCTCCGCCATAAAGT 59.093 47.619 0.00 0.00 0.00 2.66
2710 2862 0.324645 GGGACCAATCCTTGTGGCAT 60.325 55.000 0.00 0.00 45.46 4.40
2869 3021 3.358932 ATAGGGTTTGGGCCGCCAG 62.359 63.158 12.58 0.00 0.00 4.85
2870 3022 3.343326 ATAGGGTTTGGGCCGCCA 61.343 61.111 12.58 0.00 0.00 5.69
2973 3129 2.093181 ACCGTCATTAGCATGGCAGTTA 60.093 45.455 0.00 0.00 34.30 2.24
2985 3141 2.682352 CACATGGATGCAACCGTCATTA 59.318 45.455 4.45 0.00 0.00 1.90
3023 3179 9.730420 TGCTTTTTGACTTTCTTCTAATGTTAC 57.270 29.630 0.00 0.00 0.00 2.50
3145 3309 9.740710 AAGAAACATGTAATAAGAAGCTAACCT 57.259 29.630 0.00 0.00 0.00 3.50
3248 3412 0.855598 ATGGATGGTCCTTGGATGGG 59.144 55.000 0.00 0.00 37.46 4.00
3320 3484 2.455032 CTATCAGAAGCAACCGAGTCG 58.545 52.381 5.29 5.29 0.00 4.18
3450 3614 6.811253 AATTGTTTACTCCTTATTCGTGCA 57.189 33.333 0.00 0.00 0.00 4.57
3594 3762 5.022282 ACAATTTGCAAGGTAAAGCTTGT 57.978 34.783 19.74 1.31 33.49 3.16
3750 3935 3.279434 AGGAATTCGACCAAGGCATAAC 58.721 45.455 0.00 0.00 0.00 1.89
3756 3941 2.095372 GCGTAAAGGAATTCGACCAAGG 59.905 50.000 0.00 0.00 0.00 3.61
3760 3945 2.475685 GCAAGCGTAAAGGAATTCGACC 60.476 50.000 0.00 0.00 0.00 4.79
3775 3961 4.514545 TTTACGAATCTACATGCAAGCG 57.485 40.909 0.00 0.00 0.00 4.68
3816 4156 4.442753 GGGTGGAGATGCTCTAAGAAGAAG 60.443 50.000 0.00 0.00 0.00 2.85
3819 4159 2.223923 CGGGTGGAGATGCTCTAAGAAG 60.224 54.545 0.00 0.00 0.00 2.85
3820 4160 1.757118 CGGGTGGAGATGCTCTAAGAA 59.243 52.381 0.00 0.00 0.00 2.52
3822 4162 1.115467 ACGGGTGGAGATGCTCTAAG 58.885 55.000 0.00 0.00 0.00 2.18
3823 4163 1.480954 GAACGGGTGGAGATGCTCTAA 59.519 52.381 0.00 0.00 0.00 2.10
3824 4164 1.112113 GAACGGGTGGAGATGCTCTA 58.888 55.000 0.00 0.00 0.00 2.43
3825 4165 0.904865 TGAACGGGTGGAGATGCTCT 60.905 55.000 0.00 0.00 0.00 4.09
3826 4166 0.460987 CTGAACGGGTGGAGATGCTC 60.461 60.000 0.00 0.00 0.00 4.26
3827 4167 1.599047 CTGAACGGGTGGAGATGCT 59.401 57.895 0.00 0.00 0.00 3.79
3828 4168 2.109126 GCTGAACGGGTGGAGATGC 61.109 63.158 0.00 0.00 0.00 3.91
3829 4169 1.450312 GGCTGAACGGGTGGAGATG 60.450 63.158 0.00 0.00 0.00 2.90
3830 4170 2.670148 GGGCTGAACGGGTGGAGAT 61.670 63.158 0.00 0.00 0.00 2.75
3831 4171 3.319198 GGGCTGAACGGGTGGAGA 61.319 66.667 0.00 0.00 0.00 3.71
3832 4172 4.410400 GGGGCTGAACGGGTGGAG 62.410 72.222 0.00 0.00 0.00 3.86
3848 4188 3.631046 GCCGATCTAGCCCTGGGG 61.631 72.222 16.03 4.75 38.57 4.96
3849 4189 3.631046 GGCCGATCTAGCCCTGGG 61.631 72.222 8.86 8.86 45.16 4.45
3912 4254 0.800012 GTTCGAATTTGCCGTGGCTA 59.200 50.000 12.84 0.89 42.51 3.93
3928 4271 1.143969 CGCGGGAATGGACTACGTTC 61.144 60.000 0.00 0.00 43.05 3.95
3950 4294 1.944024 CGGATTGTGGCGCCTATTTTA 59.056 47.619 29.70 1.94 0.00 1.52
3958 4302 2.823829 GATCACCGGATTGTGGCGC 61.824 63.158 9.46 0.00 36.87 6.53
3972 4316 1.264749 ACCTACTGGCCGCTTGATCA 61.265 55.000 0.00 0.00 36.63 2.92
4220 4592 0.832135 TGAACCAGCTTCCCTCGACT 60.832 55.000 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.