Multiple sequence alignment - TraesCS3B01G224800
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G224800 | chr3B | 100.000 | 4348 | 0 | 0 | 1 | 4348 | 306557374 | 306561721 | 0.000000e+00 | 8030.0 |
1 | TraesCS3B01G224800 | chr3B | 89.412 | 510 | 36 | 4 | 3856 | 4348 | 771446723 | 771446215 | 1.030000e-175 | 627.0 |
2 | TraesCS3B01G224800 | chr3B | 90.604 | 447 | 23 | 7 | 3919 | 4348 | 480371867 | 480371423 | 3.770000e-160 | 575.0 |
3 | TraesCS3B01G224800 | chr3B | 83.065 | 248 | 21 | 10 | 3856 | 4095 | 707267776 | 707267542 | 5.700000e-49 | 206.0 |
4 | TraesCS3B01G224800 | chr3D | 95.260 | 2173 | 66 | 13 | 1606 | 3750 | 254340329 | 254342492 | 0.000000e+00 | 3408.0 |
5 | TraesCS3B01G224800 | chr3D | 93.508 | 878 | 29 | 8 | 563 | 1433 | 254339481 | 254340337 | 0.000000e+00 | 1280.0 |
6 | TraesCS3B01G224800 | chr3D | 80.963 | 436 | 47 | 14 | 7 | 435 | 254338863 | 254339269 | 3.260000e-81 | 313.0 |
7 | TraesCS3B01G224800 | chr3D | 95.238 | 42 | 0 | 2 | 3785 | 3826 | 254342697 | 254342736 | 1.010000e-06 | 65.8 |
8 | TraesCS3B01G224800 | chr3A | 93.915 | 2235 | 84 | 20 | 1606 | 3826 | 334693981 | 334691785 | 0.000000e+00 | 3326.0 |
9 | TraesCS3B01G224800 | chr3A | 94.055 | 841 | 26 | 8 | 608 | 1433 | 334694804 | 334693973 | 0.000000e+00 | 1254.0 |
10 | TraesCS3B01G224800 | chr3A | 99.408 | 169 | 1 | 0 | 19 | 187 | 12424432 | 12424264 | 1.520000e-79 | 307.0 |
11 | TraesCS3B01G224800 | chr3A | 98.266 | 173 | 3 | 0 | 19 | 191 | 80489270 | 80489098 | 1.960000e-78 | 303.0 |
12 | TraesCS3B01G224800 | chr3A | 84.314 | 255 | 13 | 7 | 185 | 436 | 334701211 | 334700981 | 1.570000e-54 | 224.0 |
13 | TraesCS3B01G224800 | chr7B | 90.927 | 518 | 22 | 4 | 3856 | 4348 | 748643155 | 748642638 | 0.000000e+00 | 673.0 |
14 | TraesCS3B01G224800 | chr7B | 86.693 | 511 | 28 | 6 | 3856 | 4348 | 16712635 | 16712147 | 8.280000e-147 | 531.0 |
15 | TraesCS3B01G224800 | chr7B | 98.266 | 173 | 2 | 1 | 1434 | 1605 | 717040783 | 717040611 | 7.070000e-78 | 302.0 |
16 | TraesCS3B01G224800 | chr5B | 90.058 | 513 | 31 | 9 | 3856 | 4348 | 378910042 | 378910554 | 0.000000e+00 | 647.0 |
17 | TraesCS3B01G224800 | chr5B | 89.370 | 508 | 37 | 12 | 3856 | 4348 | 614060338 | 614060843 | 1.330000e-174 | 623.0 |
18 | TraesCS3B01G224800 | chr5B | 89.126 | 515 | 37 | 10 | 3851 | 4347 | 671979617 | 671980130 | 1.330000e-174 | 623.0 |
19 | TraesCS3B01G224800 | chr5B | 88.824 | 510 | 39 | 5 | 3856 | 4348 | 476817898 | 476818406 | 1.030000e-170 | 610.0 |
20 | TraesCS3B01G224800 | chr5B | 87.442 | 430 | 50 | 3 | 1755 | 2182 | 655712727 | 655712300 | 3.910000e-135 | 492.0 |
21 | TraesCS3B01G224800 | chr5B | 99.422 | 173 | 0 | 1 | 1434 | 1605 | 343950926 | 343951098 | 3.260000e-81 | 313.0 |
22 | TraesCS3B01G224800 | chr5B | 99.422 | 173 | 0 | 1 | 1434 | 1605 | 407048722 | 407048550 | 3.260000e-81 | 313.0 |
23 | TraesCS3B01G224800 | chr5B | 97.688 | 173 | 2 | 2 | 1434 | 1605 | 409869605 | 409869434 | 3.290000e-76 | 296.0 |
24 | TraesCS3B01G224800 | chr5B | 97.688 | 173 | 3 | 1 | 1434 | 1605 | 665001693 | 665001865 | 3.290000e-76 | 296.0 |
25 | TraesCS3B01G224800 | chr5B | 89.216 | 102 | 11 | 0 | 1606 | 1707 | 89746035 | 89746136 | 1.270000e-25 | 128.0 |
26 | TraesCS3B01G224800 | chr5B | 85.227 | 88 | 13 | 0 | 2778 | 2865 | 572380904 | 572380817 | 1.670000e-14 | 91.6 |
27 | TraesCS3B01G224800 | chr1B | 89.432 | 511 | 32 | 10 | 3856 | 4348 | 622932995 | 622932489 | 3.690000e-175 | 625.0 |
28 | TraesCS3B01G224800 | chr1B | 87.298 | 496 | 44 | 13 | 3856 | 4348 | 643908879 | 643909358 | 2.290000e-152 | 549.0 |
29 | TraesCS3B01G224800 | chr1B | 88.217 | 314 | 23 | 4 | 3856 | 4162 | 87999740 | 88000046 | 3.200000e-96 | 363.0 |
30 | TraesCS3B01G224800 | chr1B | 98.266 | 173 | 2 | 1 | 1434 | 1605 | 558516438 | 558516266 | 7.070000e-78 | 302.0 |
31 | TraesCS3B01G224800 | chr4B | 88.998 | 509 | 37 | 8 | 3856 | 4348 | 145392718 | 145392213 | 2.870000e-171 | 612.0 |
32 | TraesCS3B01G224800 | chr4B | 87.861 | 346 | 24 | 3 | 3856 | 4184 | 667407716 | 667408060 | 1.470000e-104 | 390.0 |
33 | TraesCS3B01G224800 | chr6B | 90.487 | 452 | 26 | 2 | 3856 | 4291 | 521032715 | 521032265 | 8.110000e-162 | 580.0 |
34 | TraesCS3B01G224800 | chr6B | 97.701 | 174 | 2 | 2 | 1434 | 1605 | 162867603 | 162867776 | 9.140000e-77 | 298.0 |
35 | TraesCS3B01G224800 | chr6B | 94.624 | 186 | 9 | 1 | 1427 | 1611 | 213152560 | 213152375 | 1.980000e-73 | 287.0 |
36 | TraesCS3B01G224800 | chr6A | 89.070 | 430 | 43 | 3 | 1755 | 2182 | 65556175 | 65555748 | 8.280000e-147 | 531.0 |
37 | TraesCS3B01G224800 | chr6A | 87.213 | 305 | 35 | 4 | 1607 | 1908 | 48550395 | 48550698 | 1.160000e-90 | 344.0 |
38 | TraesCS3B01G224800 | chr6A | 97.714 | 175 | 4 | 0 | 21 | 195 | 1830018 | 1829844 | 7.070000e-78 | 302.0 |
39 | TraesCS3B01G224800 | chr6A | 95.288 | 191 | 6 | 3 | 7 | 196 | 596588270 | 596588458 | 2.540000e-77 | 300.0 |
40 | TraesCS3B01G224800 | chr6A | 79.730 | 296 | 25 | 18 | 1145 | 1431 | 65556529 | 65556260 | 9.610000e-42 | 182.0 |
41 | TraesCS3B01G224800 | chrUn | 86.444 | 509 | 33 | 14 | 3856 | 4348 | 27208199 | 27208687 | 3.850000e-145 | 525.0 |
42 | TraesCS3B01G224800 | chrUn | 88.631 | 431 | 43 | 5 | 1755 | 2182 | 39185409 | 39185836 | 1.790000e-143 | 520.0 |
43 | TraesCS3B01G224800 | chrUn | 79.264 | 299 | 28 | 16 | 1142 | 1431 | 39185052 | 39185325 | 1.240000e-40 | 178.0 |
44 | TraesCS3B01G224800 | chr2B | 88.852 | 305 | 30 | 4 | 1606 | 1907 | 745508767 | 745509070 | 5.310000e-99 | 372.0 |
45 | TraesCS3B01G224800 | chr2B | 98.266 | 173 | 2 | 1 | 1434 | 1605 | 256082988 | 256082816 | 7.070000e-78 | 302.0 |
46 | TraesCS3B01G224800 | chr4D | 88.197 | 305 | 32 | 4 | 1607 | 1908 | 4290700 | 4290397 | 1.150000e-95 | 361.0 |
47 | TraesCS3B01G224800 | chr5A | 100.000 | 167 | 0 | 0 | 20 | 186 | 362176895 | 362177061 | 4.220000e-80 | 309.0 |
48 | TraesCS3B01G224800 | chr5A | 100.000 | 32 | 0 | 0 | 2819 | 2850 | 459771883 | 459771914 | 4.700000e-05 | 60.2 |
49 | TraesCS3B01G224800 | chr4A | 99.412 | 170 | 1 | 0 | 20 | 189 | 464567601 | 464567432 | 4.220000e-80 | 309.0 |
50 | TraesCS3B01G224800 | chr4A | 96.154 | 182 | 7 | 0 | 5 | 186 | 649026970 | 649027151 | 9.140000e-77 | 298.0 |
51 | TraesCS3B01G224800 | chr4A | 90.385 | 104 | 10 | 0 | 1805 | 1908 | 524287367 | 524287470 | 2.110000e-28 | 137.0 |
52 | TraesCS3B01G224800 | chr4A | 90.196 | 102 | 10 | 0 | 1606 | 1707 | 281593184 | 281593083 | 2.730000e-27 | 134.0 |
53 | TraesCS3B01G224800 | chr7A | 98.266 | 173 | 3 | 0 | 16 | 188 | 344866591 | 344866763 | 1.960000e-78 | 303.0 |
54 | TraesCS3B01G224800 | chr7A | 97.740 | 177 | 3 | 1 | 22 | 197 | 493942302 | 493942126 | 1.960000e-78 | 303.0 |
55 | TraesCS3B01G224800 | chr5D | 89.216 | 102 | 11 | 0 | 1606 | 1707 | 462908673 | 462908774 | 1.270000e-25 | 128.0 |
56 | TraesCS3B01G224800 | chr5D | 78.125 | 128 | 28 | 0 | 2777 | 2904 | 465023972 | 465023845 | 1.000000e-11 | 82.4 |
57 | TraesCS3B01G224800 | chr1D | 89.216 | 102 | 11 | 0 | 1606 | 1707 | 235546766 | 235546665 | 1.270000e-25 | 128.0 |
58 | TraesCS3B01G224800 | chr7D | 78.448 | 116 | 21 | 3 | 2789 | 2902 | 369135498 | 369135385 | 6.030000e-09 | 73.1 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G224800 | chr3B | 306557374 | 306561721 | 4347 | False | 8030.0 | 8030 | 100.00000 | 1 | 4348 | 1 | chr3B.!!$F1 | 4347 |
1 | TraesCS3B01G224800 | chr3B | 771446215 | 771446723 | 508 | True | 627.0 | 627 | 89.41200 | 3856 | 4348 | 1 | chr3B.!!$R3 | 492 |
2 | TraesCS3B01G224800 | chr3D | 254338863 | 254342736 | 3873 | False | 1266.7 | 3408 | 91.24225 | 7 | 3826 | 4 | chr3D.!!$F1 | 3819 |
3 | TraesCS3B01G224800 | chr3A | 334691785 | 334694804 | 3019 | True | 2290.0 | 3326 | 93.98500 | 608 | 3826 | 2 | chr3A.!!$R4 | 3218 |
4 | TraesCS3B01G224800 | chr7B | 748642638 | 748643155 | 517 | True | 673.0 | 673 | 90.92700 | 3856 | 4348 | 1 | chr7B.!!$R3 | 492 |
5 | TraesCS3B01G224800 | chr5B | 378910042 | 378910554 | 512 | False | 647.0 | 647 | 90.05800 | 3856 | 4348 | 1 | chr5B.!!$F3 | 492 |
6 | TraesCS3B01G224800 | chr5B | 614060338 | 614060843 | 505 | False | 623.0 | 623 | 89.37000 | 3856 | 4348 | 1 | chr5B.!!$F5 | 492 |
7 | TraesCS3B01G224800 | chr5B | 671979617 | 671980130 | 513 | False | 623.0 | 623 | 89.12600 | 3851 | 4347 | 1 | chr5B.!!$F7 | 496 |
8 | TraesCS3B01G224800 | chr5B | 476817898 | 476818406 | 508 | False | 610.0 | 610 | 88.82400 | 3856 | 4348 | 1 | chr5B.!!$F4 | 492 |
9 | TraesCS3B01G224800 | chr1B | 622932489 | 622932995 | 506 | True | 625.0 | 625 | 89.43200 | 3856 | 4348 | 1 | chr1B.!!$R2 | 492 |
10 | TraesCS3B01G224800 | chr4B | 145392213 | 145392718 | 505 | True | 612.0 | 612 | 88.99800 | 3856 | 4348 | 1 | chr4B.!!$R1 | 492 |
11 | TraesCS3B01G224800 | chr6A | 65555748 | 65556529 | 781 | True | 356.5 | 531 | 84.40000 | 1145 | 2182 | 2 | chr6A.!!$R2 | 1037 |
12 | TraesCS3B01G224800 | chrUn | 39185052 | 39185836 | 784 | False | 349.0 | 520 | 83.94750 | 1142 | 2182 | 2 | chrUn.!!$F2 | 1040 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
823 | 944 | 0.036306 | TCCAACCCGCTCTTTCTTCC | 59.964 | 55.0 | 0.0 | 0.0 | 0.0 | 3.46 | F |
1180 | 1315 | 0.179094 | CATACGCCTTTCCGCCACTA | 60.179 | 55.0 | 0.0 | 0.0 | 0.0 | 2.74 | F |
1264 | 1399 | 0.179119 | ATAACACACGCTCGTAGGGC | 60.179 | 55.0 | 0.0 | 0.0 | 0.0 | 5.19 | F |
2632 | 2784 | 0.251354 | AGCATTGTGAGAGACGCCAT | 59.749 | 50.0 | 0.0 | 0.0 | 0.0 | 4.40 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2710 | 2862 | 0.324645 | GGGACCAATCCTTGTGGCAT | 60.325 | 55.000 | 0.0 | 0.0 | 45.46 | 4.40 | R |
2973 | 3129 | 2.093181 | ACCGTCATTAGCATGGCAGTTA | 60.093 | 45.455 | 0.0 | 0.0 | 34.30 | 2.24 | R |
3248 | 3412 | 0.855598 | ATGGATGGTCCTTGGATGGG | 59.144 | 55.000 | 0.0 | 0.0 | 37.46 | 4.00 | R |
3826 | 4166 | 0.460987 | CTGAACGGGTGGAGATGCTC | 60.461 | 60.000 | 0.0 | 0.0 | 0.00 | 4.26 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
43 | 44 | 4.892345 | ACTACTCCCTCCGTTCCTAAATAC | 59.108 | 45.833 | 0.00 | 0.00 | 0.00 | 1.89 |
49 | 50 | 4.161754 | CCCTCCGTTCCTAAATACTTGTCT | 59.838 | 45.833 | 0.00 | 0.00 | 0.00 | 3.41 |
52 | 53 | 6.313164 | CCTCCGTTCCTAAATACTTGTCTTTC | 59.687 | 42.308 | 0.00 | 0.00 | 0.00 | 2.62 |
57 | 58 | 7.010275 | CGTTCCTAAATACTTGTCTTTCTAGGC | 59.990 | 40.741 | 0.00 | 0.00 | 0.00 | 3.93 |
65 | 66 | 6.319141 | ACTTGTCTTTCTAGGCATTTCAAC | 57.681 | 37.500 | 0.00 | 0.00 | 35.56 | 3.18 |
66 | 67 | 5.827797 | ACTTGTCTTTCTAGGCATTTCAACA | 59.172 | 36.000 | 0.00 | 0.00 | 35.56 | 3.33 |
67 | 68 | 6.321181 | ACTTGTCTTTCTAGGCATTTCAACAA | 59.679 | 34.615 | 0.00 | 0.00 | 35.56 | 2.83 |
69 | 70 | 5.827797 | TGTCTTTCTAGGCATTTCAACAAGT | 59.172 | 36.000 | 0.00 | 0.00 | 29.10 | 3.16 |
70 | 71 | 6.145535 | GTCTTTCTAGGCATTTCAACAAGTG | 58.854 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
71 | 72 | 6.017109 | GTCTTTCTAGGCATTTCAACAAGTGA | 60.017 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
72 | 73 | 5.689383 | TTCTAGGCATTTCAACAAGTGAC | 57.311 | 39.130 | 0.00 | 0.00 | 35.39 | 3.67 |
74 | 75 | 6.109156 | TCTAGGCATTTCAACAAGTGACTA | 57.891 | 37.500 | 0.00 | 0.00 | 38.51 | 2.59 |
75 | 76 | 5.932303 | TCTAGGCATTTCAACAAGTGACTAC | 59.068 | 40.000 | 0.00 | 0.00 | 38.51 | 2.73 |
76 | 77 | 4.460263 | AGGCATTTCAACAAGTGACTACA | 58.540 | 39.130 | 0.00 | 0.00 | 35.84 | 2.74 |
77 | 78 | 5.072741 | AGGCATTTCAACAAGTGACTACAT | 58.927 | 37.500 | 0.00 | 0.00 | 35.84 | 2.29 |
78 | 79 | 6.237901 | AGGCATTTCAACAAGTGACTACATA | 58.762 | 36.000 | 0.00 | 0.00 | 35.84 | 2.29 |
79 | 80 | 6.149474 | AGGCATTTCAACAAGTGACTACATAC | 59.851 | 38.462 | 0.00 | 0.00 | 35.84 | 2.39 |
80 | 81 | 6.015504 | GCATTTCAACAAGTGACTACATACG | 58.984 | 40.000 | 0.00 | 0.00 | 35.39 | 3.06 |
82 | 83 | 5.456548 | TTCAACAAGTGACTACATACGGA | 57.543 | 39.130 | 0.00 | 0.00 | 35.39 | 4.69 |
83 | 84 | 5.055642 | TCAACAAGTGACTACATACGGAG | 57.944 | 43.478 | 0.00 | 0.00 | 0.00 | 4.63 |
85 | 86 | 2.823747 | ACAAGTGACTACATACGGAGCA | 59.176 | 45.455 | 0.00 | 0.00 | 0.00 | 4.26 |
86 | 87 | 3.257375 | ACAAGTGACTACATACGGAGCAA | 59.743 | 43.478 | 0.00 | 0.00 | 0.00 | 3.91 |
88 | 89 | 4.530710 | AGTGACTACATACGGAGCAAAA | 57.469 | 40.909 | 0.00 | 0.00 | 0.00 | 2.44 |
89 | 90 | 5.086104 | AGTGACTACATACGGAGCAAAAT | 57.914 | 39.130 | 0.00 | 0.00 | 0.00 | 1.82 |
90 | 91 | 4.870426 | AGTGACTACATACGGAGCAAAATG | 59.130 | 41.667 | 0.00 | 0.00 | 0.00 | 2.32 |
93 | 94 | 5.086104 | ACTACATACGGAGCAAAATGAGT | 57.914 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
94 | 95 | 4.870426 | ACTACATACGGAGCAAAATGAGTG | 59.130 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
96 | 97 | 4.323417 | ACATACGGAGCAAAATGAGTGAA | 58.677 | 39.130 | 0.00 | 0.00 | 0.00 | 3.18 |
97 | 98 | 4.943705 | ACATACGGAGCAAAATGAGTGAAT | 59.056 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
98 | 99 | 5.065218 | ACATACGGAGCAAAATGAGTGAATC | 59.935 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
100 | 101 | 4.832248 | ACGGAGCAAAATGAGTGAATCTA | 58.168 | 39.130 | 0.00 | 0.00 | 0.00 | 1.98 |
101 | 102 | 4.631813 | ACGGAGCAAAATGAGTGAATCTAC | 59.368 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
103 | 104 | 5.446473 | CGGAGCAAAATGAGTGAATCTACAC | 60.446 | 44.000 | 0.00 | 0.00 | 40.60 | 2.90 |
208 | 210 | 6.916360 | ATTAATCATGTCCAACCAAACACT | 57.084 | 33.333 | 0.00 | 0.00 | 0.00 | 3.55 |
247 | 249 | 1.282875 | GAGCGCAAGTCACCAAACC | 59.717 | 57.895 | 11.47 | 0.00 | 41.68 | 3.27 |
251 | 253 | 1.021202 | CGCAAGTCACCAAACCTCAA | 58.979 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
254 | 256 | 2.930950 | CAAGTCACCAAACCTCAAGGA | 58.069 | 47.619 | 2.30 | 0.00 | 38.94 | 3.36 |
258 | 260 | 4.546674 | AGTCACCAAACCTCAAGGAAAAT | 58.453 | 39.130 | 2.30 | 0.00 | 38.94 | 1.82 |
269 | 271 | 6.249192 | ACCTCAAGGAAAATTTCTTCCCTAG | 58.751 | 40.000 | 5.65 | 2.02 | 45.28 | 3.02 |
270 | 272 | 6.183361 | ACCTCAAGGAAAATTTCTTCCCTAGT | 60.183 | 38.462 | 5.65 | 0.00 | 45.28 | 2.57 |
271 | 273 | 6.151817 | CCTCAAGGAAAATTTCTTCCCTAGTG | 59.848 | 42.308 | 5.65 | 1.03 | 45.28 | 2.74 |
272 | 274 | 5.476945 | TCAAGGAAAATTTCTTCCCTAGTGC | 59.523 | 40.000 | 5.65 | 0.00 | 45.28 | 4.40 |
273 | 275 | 4.998051 | AGGAAAATTTCTTCCCTAGTGCA | 58.002 | 39.130 | 5.65 | 0.00 | 45.28 | 4.57 |
274 | 276 | 5.012893 | AGGAAAATTTCTTCCCTAGTGCAG | 58.987 | 41.667 | 5.65 | 0.00 | 45.28 | 4.41 |
275 | 277 | 4.380973 | GGAAAATTTCTTCCCTAGTGCAGC | 60.381 | 45.833 | 5.65 | 0.00 | 39.26 | 5.25 |
276 | 278 | 2.426842 | ATTTCTTCCCTAGTGCAGCC | 57.573 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
277 | 279 | 1.064003 | TTTCTTCCCTAGTGCAGCCA | 58.936 | 50.000 | 0.00 | 0.00 | 0.00 | 4.75 |
278 | 280 | 0.615331 | TTCTTCCCTAGTGCAGCCAG | 59.385 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
279 | 281 | 0.252239 | TCTTCCCTAGTGCAGCCAGA | 60.252 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
280 | 282 | 0.107945 | CTTCCCTAGTGCAGCCAGAC | 60.108 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
281 | 283 | 0.545309 | TTCCCTAGTGCAGCCAGACT | 60.545 | 55.000 | 0.00 | 0.00 | 0.00 | 3.24 |
305 | 307 | 6.806751 | TGTATGCAGTCTATCAAACTACCTC | 58.193 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
306 | 308 | 6.607600 | TGTATGCAGTCTATCAAACTACCTCT | 59.392 | 38.462 | 0.00 | 0.00 | 0.00 | 3.69 |
317 | 319 | 4.887071 | TCAAACTACCTCTGCAAAACATGT | 59.113 | 37.500 | 0.00 | 0.00 | 0.00 | 3.21 |
319 | 321 | 5.852282 | AACTACCTCTGCAAAACATGTTT | 57.148 | 34.783 | 18.13 | 18.13 | 0.00 | 2.83 |
354 | 356 | 4.974645 | ATCAGGTCCAACTAAGTCACAA | 57.025 | 40.909 | 0.00 | 0.00 | 0.00 | 3.33 |
358 | 360 | 4.821805 | CAGGTCCAACTAAGTCACAAATGT | 59.178 | 41.667 | 0.00 | 0.00 | 0.00 | 2.71 |
399 | 401 | 1.264288 | GAGGGCACAAAGTTTCTGTCG | 59.736 | 52.381 | 0.00 | 0.00 | 0.00 | 4.35 |
421 | 423 | 0.105593 | AGCTCATATGCACCCTCGTG | 59.894 | 55.000 | 0.00 | 0.00 | 43.35 | 4.35 |
424 | 426 | 2.205074 | CTCATATGCACCCTCGTGAAC | 58.795 | 52.381 | 0.00 | 0.00 | 43.14 | 3.18 |
435 | 437 | 3.682858 | ACCCTCGTGAACAAATATTGACG | 59.317 | 43.478 | 0.00 | 0.00 | 31.94 | 4.35 |
440 | 499 | 5.466819 | TCGTGAACAAATATTGACGTCTCT | 58.533 | 37.500 | 17.92 | 6.40 | 32.38 | 3.10 |
456 | 515 | 6.037720 | TGACGTCTCTTCATAAAAAGTTGCAA | 59.962 | 34.615 | 17.92 | 0.00 | 0.00 | 4.08 |
463 | 522 | 6.985645 | TCTTCATAAAAAGTTGCAAGCATGTT | 59.014 | 30.769 | 0.00 | 0.00 | 0.00 | 2.71 |
464 | 523 | 6.528014 | TCATAAAAAGTTGCAAGCATGTTG | 57.472 | 33.333 | 0.00 | 0.00 | 0.00 | 3.33 |
465 | 524 | 6.279123 | TCATAAAAAGTTGCAAGCATGTTGA | 58.721 | 32.000 | 0.00 | 0.00 | 0.00 | 3.18 |
466 | 525 | 6.421501 | TCATAAAAAGTTGCAAGCATGTTGAG | 59.578 | 34.615 | 0.00 | 0.00 | 0.00 | 3.02 |
467 | 526 | 4.389890 | AAAAGTTGCAAGCATGTTGAGA | 57.610 | 36.364 | 0.00 | 0.00 | 0.00 | 3.27 |
468 | 527 | 4.389890 | AAAGTTGCAAGCATGTTGAGAA | 57.610 | 36.364 | 0.00 | 2.30 | 0.00 | 2.87 |
469 | 528 | 4.595762 | AAGTTGCAAGCATGTTGAGAAT | 57.404 | 36.364 | 0.00 | 0.00 | 0.00 | 2.40 |
470 | 529 | 4.595762 | AGTTGCAAGCATGTTGAGAATT | 57.404 | 36.364 | 0.00 | 0.00 | 0.00 | 2.17 |
471 | 530 | 4.553323 | AGTTGCAAGCATGTTGAGAATTC | 58.447 | 39.130 | 0.00 | 0.00 | 0.00 | 2.17 |
472 | 531 | 3.581024 | TGCAAGCATGTTGAGAATTCC | 57.419 | 42.857 | 0.65 | 0.00 | 0.00 | 3.01 |
473 | 532 | 3.159472 | TGCAAGCATGTTGAGAATTCCT | 58.841 | 40.909 | 0.65 | 0.00 | 0.00 | 3.36 |
474 | 533 | 3.192001 | TGCAAGCATGTTGAGAATTCCTC | 59.808 | 43.478 | 0.65 | 0.09 | 42.30 | 3.71 |
521 | 596 | 4.151883 | ACTACCTACCAAACACGTCCTAA | 58.848 | 43.478 | 0.00 | 0.00 | 0.00 | 2.69 |
531 | 606 | 6.015772 | ACCAAACACGTCCTAATATGCTTTTT | 60.016 | 34.615 | 0.00 | 0.00 | 0.00 | 1.94 |
539 | 614 | 6.747280 | CGTCCTAATATGCTTTTTGGACTTTG | 59.253 | 38.462 | 17.68 | 6.35 | 42.86 | 2.77 |
592 | 702 | 1.762419 | TTTTTCGACTCGACCTCACG | 58.238 | 50.000 | 0.00 | 0.00 | 34.89 | 4.35 |
593 | 703 | 0.946528 | TTTTCGACTCGACCTCACGA | 59.053 | 50.000 | 0.00 | 0.00 | 40.00 | 4.35 |
638 | 748 | 3.458163 | GCATCCGACCCGTCTGGA | 61.458 | 66.667 | 9.70 | 9.70 | 37.49 | 3.86 |
671 | 791 | 1.733399 | GTGAGTGCCGGTTCTCGTC | 60.733 | 63.158 | 18.11 | 12.29 | 37.11 | 4.20 |
673 | 793 | 3.264866 | GAGTGCCGGTTCTCGTCGT | 62.265 | 63.158 | 1.90 | 0.00 | 37.11 | 4.34 |
676 | 796 | 2.355481 | GCCGGTTCTCGTCGTGTT | 60.355 | 61.111 | 1.90 | 0.00 | 37.11 | 3.32 |
695 | 815 | 0.109532 | TCTGCTCCGATCCGATCTCT | 59.890 | 55.000 | 6.81 | 0.00 | 0.00 | 3.10 |
705 | 825 | 2.278206 | CGATCTCTGTCGTGGCCG | 60.278 | 66.667 | 0.00 | 0.00 | 36.88 | 6.13 |
712 | 832 | 2.434185 | TGTCGTGGCCGAGCAATC | 60.434 | 61.111 | 0.00 | 0.00 | 45.26 | 2.67 |
823 | 944 | 0.036306 | TCCAACCCGCTCTTTCTTCC | 59.964 | 55.000 | 0.00 | 0.00 | 0.00 | 3.46 |
889 | 1011 | 6.535508 | GCAAGGTACGATCTGATTTAACTTCT | 59.464 | 38.462 | 7.28 | 0.00 | 0.00 | 2.85 |
901 | 1023 | 8.201464 | TCTGATTTAACTTCTTATATGCGTCCA | 58.799 | 33.333 | 0.00 | 0.00 | 0.00 | 4.02 |
904 | 1026 | 7.534085 | TTTAACTTCTTATATGCGTCCACAG | 57.466 | 36.000 | 0.00 | 0.00 | 0.00 | 3.66 |
971 | 1094 | 4.511826 | GGTCTATTTGGTAGATTCCTTGCG | 59.488 | 45.833 | 0.00 | 0.00 | 41.33 | 4.85 |
1180 | 1315 | 0.179094 | CATACGCCTTTCCGCCACTA | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 2.74 |
1181 | 1316 | 0.538118 | ATACGCCTTTCCGCCACTAA | 59.462 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
1209 | 1344 | 1.480954 | GTCCTAGAGTCGGGCAAATCA | 59.519 | 52.381 | 0.00 | 0.00 | 0.00 | 2.57 |
1219 | 1354 | 0.236711 | GGGCAAATCATCAGCGATCG | 59.763 | 55.000 | 11.69 | 11.69 | 0.00 | 3.69 |
1253 | 1388 | 3.425758 | GGCGGTGCTAGAAAATAACACAC | 60.426 | 47.826 | 0.00 | 0.00 | 32.89 | 3.82 |
1258 | 1393 | 3.366724 | TGCTAGAAAATAACACACGCTCG | 59.633 | 43.478 | 0.00 | 0.00 | 0.00 | 5.03 |
1259 | 1394 | 3.367025 | GCTAGAAAATAACACACGCTCGT | 59.633 | 43.478 | 0.00 | 0.00 | 0.00 | 4.18 |
1260 | 1395 | 4.560035 | GCTAGAAAATAACACACGCTCGTA | 59.440 | 41.667 | 0.00 | 0.00 | 0.00 | 3.43 |
1261 | 1396 | 5.275788 | GCTAGAAAATAACACACGCTCGTAG | 60.276 | 44.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1262 | 1397 | 3.924686 | AGAAAATAACACACGCTCGTAGG | 59.075 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
1263 | 1398 | 2.288961 | AATAACACACGCTCGTAGGG | 57.711 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
1264 | 1399 | 0.179119 | ATAACACACGCTCGTAGGGC | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 5.19 |
1424 | 1561 | 4.236935 | GTGAATGCCAATTTGGTGTACAG | 58.763 | 43.478 | 16.62 | 0.00 | 40.46 | 2.74 |
1425 | 1562 | 3.257873 | TGAATGCCAATTTGGTGTACAGG | 59.742 | 43.478 | 16.62 | 0.00 | 40.46 | 4.00 |
1426 | 1563 | 2.666272 | TGCCAATTTGGTGTACAGGA | 57.334 | 45.000 | 16.62 | 0.00 | 40.46 | 3.86 |
1427 | 1564 | 3.168035 | TGCCAATTTGGTGTACAGGAT | 57.832 | 42.857 | 16.62 | 0.00 | 40.46 | 3.24 |
1428 | 1565 | 3.505386 | TGCCAATTTGGTGTACAGGATT | 58.495 | 40.909 | 16.62 | 0.00 | 40.46 | 3.01 |
1429 | 1566 | 3.900601 | TGCCAATTTGGTGTACAGGATTT | 59.099 | 39.130 | 16.62 | 0.00 | 40.46 | 2.17 |
1430 | 1567 | 4.244862 | GCCAATTTGGTGTACAGGATTTG | 58.755 | 43.478 | 16.62 | 0.00 | 40.46 | 2.32 |
1431 | 1568 | 4.021544 | GCCAATTTGGTGTACAGGATTTGA | 60.022 | 41.667 | 16.62 | 0.00 | 40.46 | 2.69 |
1432 | 1569 | 5.469479 | CCAATTTGGTGTACAGGATTTGAC | 58.531 | 41.667 | 7.31 | 0.00 | 31.35 | 3.18 |
1433 | 1570 | 5.153513 | CAATTTGGTGTACAGGATTTGACG | 58.846 | 41.667 | 0.00 | 0.00 | 0.00 | 4.35 |
1434 | 1571 | 2.465860 | TGGTGTACAGGATTTGACGG | 57.534 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
1435 | 1572 | 1.002659 | TGGTGTACAGGATTTGACGGG | 59.997 | 52.381 | 0.00 | 0.00 | 0.00 | 5.28 |
1436 | 1573 | 1.276989 | GGTGTACAGGATTTGACGGGA | 59.723 | 52.381 | 0.00 | 0.00 | 0.00 | 5.14 |
1437 | 1574 | 2.618053 | GTGTACAGGATTTGACGGGAG | 58.382 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
1448 | 1585 | 4.867847 | ACGGGAGTGCCTAGAACT | 57.132 | 55.556 | 0.00 | 0.00 | 44.82 | 3.01 |
1449 | 1586 | 2.581074 | ACGGGAGTGCCTAGAACTC | 58.419 | 57.895 | 14.10 | 14.10 | 44.82 | 3.01 |
1450 | 1587 | 0.251653 | ACGGGAGTGCCTAGAACTCA | 60.252 | 55.000 | 20.54 | 0.39 | 44.86 | 3.41 |
1451 | 1588 | 1.115467 | CGGGAGTGCCTAGAACTCAT | 58.885 | 55.000 | 20.54 | 0.00 | 44.86 | 2.90 |
1452 | 1589 | 1.067821 | CGGGAGTGCCTAGAACTCATC | 59.932 | 57.143 | 20.54 | 13.62 | 44.86 | 2.92 |
1453 | 1590 | 2.393646 | GGGAGTGCCTAGAACTCATCT | 58.606 | 52.381 | 20.54 | 0.00 | 44.86 | 2.90 |
1454 | 1591 | 3.567397 | GGGAGTGCCTAGAACTCATCTA | 58.433 | 50.000 | 20.54 | 0.00 | 44.86 | 1.98 |
1489 | 1626 | 9.696917 | ATAATTTGGTCTCATCACTTTGAAAAC | 57.303 | 29.630 | 0.00 | 0.00 | 0.00 | 2.43 |
1490 | 1627 | 6.522625 | TTTGGTCTCATCACTTTGAAAACA | 57.477 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
1491 | 1628 | 6.522625 | TTGGTCTCATCACTTTGAAAACAA | 57.477 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
1492 | 1629 | 6.135290 | TGGTCTCATCACTTTGAAAACAAG | 57.865 | 37.500 | 0.00 | 0.00 | 0.00 | 3.16 |
1493 | 1630 | 5.885352 | TGGTCTCATCACTTTGAAAACAAGA | 59.115 | 36.000 | 0.00 | 0.00 | 0.00 | 3.02 |
1494 | 1631 | 6.376864 | TGGTCTCATCACTTTGAAAACAAGAA | 59.623 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
1495 | 1632 | 6.693113 | GGTCTCATCACTTTGAAAACAAGAAC | 59.307 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
1496 | 1633 | 7.250569 | GTCTCATCACTTTGAAAACAAGAACA | 58.749 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
1497 | 1634 | 7.430502 | GTCTCATCACTTTGAAAACAAGAACAG | 59.569 | 37.037 | 0.00 | 0.00 | 0.00 | 3.16 |
1498 | 1635 | 7.336679 | TCTCATCACTTTGAAAACAAGAACAGA | 59.663 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
1499 | 1636 | 7.999679 | TCATCACTTTGAAAACAAGAACAGAT | 58.000 | 30.769 | 0.00 | 0.00 | 0.00 | 2.90 |
1500 | 1637 | 9.119418 | TCATCACTTTGAAAACAAGAACAGATA | 57.881 | 29.630 | 0.00 | 0.00 | 0.00 | 1.98 |
1501 | 1638 | 9.173939 | CATCACTTTGAAAACAAGAACAGATAC | 57.826 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
1502 | 1639 | 8.275015 | TCACTTTGAAAACAAGAACAGATACA | 57.725 | 30.769 | 0.00 | 0.00 | 0.00 | 2.29 |
1503 | 1640 | 8.735315 | TCACTTTGAAAACAAGAACAGATACAA | 58.265 | 29.630 | 0.00 | 0.00 | 0.00 | 2.41 |
1504 | 1641 | 8.798153 | CACTTTGAAAACAAGAACAGATACAAC | 58.202 | 33.333 | 0.00 | 0.00 | 0.00 | 3.32 |
1505 | 1642 | 7.973944 | ACTTTGAAAACAAGAACAGATACAACC | 59.026 | 33.333 | 0.00 | 0.00 | 0.00 | 3.77 |
1506 | 1643 | 6.385649 | TGAAAACAAGAACAGATACAACCC | 57.614 | 37.500 | 0.00 | 0.00 | 0.00 | 4.11 |
1507 | 1644 | 5.888724 | TGAAAACAAGAACAGATACAACCCA | 59.111 | 36.000 | 0.00 | 0.00 | 0.00 | 4.51 |
1508 | 1645 | 5.767816 | AAACAAGAACAGATACAACCCAC | 57.232 | 39.130 | 0.00 | 0.00 | 0.00 | 4.61 |
1509 | 1646 | 4.431416 | ACAAGAACAGATACAACCCACA | 57.569 | 40.909 | 0.00 | 0.00 | 0.00 | 4.17 |
1510 | 1647 | 4.985538 | ACAAGAACAGATACAACCCACAT | 58.014 | 39.130 | 0.00 | 0.00 | 0.00 | 3.21 |
1511 | 1648 | 5.003804 | ACAAGAACAGATACAACCCACATC | 58.996 | 41.667 | 0.00 | 0.00 | 0.00 | 3.06 |
1512 | 1649 | 4.908601 | AGAACAGATACAACCCACATCA | 57.091 | 40.909 | 0.00 | 0.00 | 0.00 | 3.07 |
1513 | 1650 | 4.836825 | AGAACAGATACAACCCACATCAG | 58.163 | 43.478 | 0.00 | 0.00 | 0.00 | 2.90 |
1514 | 1651 | 2.991250 | ACAGATACAACCCACATCAGC | 58.009 | 47.619 | 0.00 | 0.00 | 0.00 | 4.26 |
1515 | 1652 | 2.305635 | ACAGATACAACCCACATCAGCA | 59.694 | 45.455 | 0.00 | 0.00 | 0.00 | 4.41 |
1516 | 1653 | 3.054139 | ACAGATACAACCCACATCAGCAT | 60.054 | 43.478 | 0.00 | 0.00 | 0.00 | 3.79 |
1517 | 1654 | 4.164030 | ACAGATACAACCCACATCAGCATA | 59.836 | 41.667 | 0.00 | 0.00 | 0.00 | 3.14 |
1518 | 1655 | 4.512944 | CAGATACAACCCACATCAGCATAC | 59.487 | 45.833 | 0.00 | 0.00 | 0.00 | 2.39 |
1519 | 1656 | 2.877097 | ACAACCCACATCAGCATACA | 57.123 | 45.000 | 0.00 | 0.00 | 0.00 | 2.29 |
1520 | 1657 | 2.436417 | ACAACCCACATCAGCATACAC | 58.564 | 47.619 | 0.00 | 0.00 | 0.00 | 2.90 |
1521 | 1658 | 1.398041 | CAACCCACATCAGCATACACG | 59.602 | 52.381 | 0.00 | 0.00 | 0.00 | 4.49 |
1522 | 1659 | 0.744414 | ACCCACATCAGCATACACGC | 60.744 | 55.000 | 0.00 | 0.00 | 0.00 | 5.34 |
1523 | 1660 | 0.744057 | CCCACATCAGCATACACGCA | 60.744 | 55.000 | 0.00 | 0.00 | 0.00 | 5.24 |
1524 | 1661 | 1.302366 | CCACATCAGCATACACGCAT | 58.698 | 50.000 | 0.00 | 0.00 | 0.00 | 4.73 |
1525 | 1662 | 1.262417 | CCACATCAGCATACACGCATC | 59.738 | 52.381 | 0.00 | 0.00 | 0.00 | 3.91 |
1526 | 1663 | 2.207590 | CACATCAGCATACACGCATCT | 58.792 | 47.619 | 0.00 | 0.00 | 0.00 | 2.90 |
1527 | 1664 | 2.610833 | CACATCAGCATACACGCATCTT | 59.389 | 45.455 | 0.00 | 0.00 | 0.00 | 2.40 |
1528 | 1665 | 3.803778 | CACATCAGCATACACGCATCTTA | 59.196 | 43.478 | 0.00 | 0.00 | 0.00 | 2.10 |
1529 | 1666 | 4.450080 | CACATCAGCATACACGCATCTTAT | 59.550 | 41.667 | 0.00 | 0.00 | 0.00 | 1.73 |
1530 | 1667 | 5.634859 | CACATCAGCATACACGCATCTTATA | 59.365 | 40.000 | 0.00 | 0.00 | 0.00 | 0.98 |
1531 | 1668 | 5.866092 | ACATCAGCATACACGCATCTTATAG | 59.134 | 40.000 | 0.00 | 0.00 | 0.00 | 1.31 |
1532 | 1669 | 4.237724 | TCAGCATACACGCATCTTATAGC | 58.762 | 43.478 | 0.00 | 0.00 | 0.00 | 2.97 |
1533 | 1670 | 3.989817 | CAGCATACACGCATCTTATAGCA | 59.010 | 43.478 | 0.00 | 0.00 | 0.00 | 3.49 |
1534 | 1671 | 4.628766 | CAGCATACACGCATCTTATAGCAT | 59.371 | 41.667 | 0.00 | 0.00 | 0.00 | 3.79 |
1535 | 1672 | 4.867047 | AGCATACACGCATCTTATAGCATC | 59.133 | 41.667 | 0.00 | 0.00 | 0.00 | 3.91 |
1536 | 1673 | 4.627035 | GCATACACGCATCTTATAGCATCA | 59.373 | 41.667 | 0.00 | 0.00 | 0.00 | 3.07 |
1537 | 1674 | 5.445142 | GCATACACGCATCTTATAGCATCAC | 60.445 | 44.000 | 0.00 | 0.00 | 0.00 | 3.06 |
1538 | 1675 | 4.058721 | ACACGCATCTTATAGCATCACA | 57.941 | 40.909 | 0.00 | 0.00 | 0.00 | 3.58 |
1539 | 1676 | 4.635223 | ACACGCATCTTATAGCATCACAT | 58.365 | 39.130 | 0.00 | 0.00 | 0.00 | 3.21 |
1540 | 1677 | 4.687948 | ACACGCATCTTATAGCATCACATC | 59.312 | 41.667 | 0.00 | 0.00 | 0.00 | 3.06 |
1541 | 1678 | 4.092529 | CACGCATCTTATAGCATCACATCC | 59.907 | 45.833 | 0.00 | 0.00 | 0.00 | 3.51 |
1542 | 1679 | 4.248058 | CGCATCTTATAGCATCACATCCA | 58.752 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
1543 | 1680 | 4.692155 | CGCATCTTATAGCATCACATCCAA | 59.308 | 41.667 | 0.00 | 0.00 | 0.00 | 3.53 |
1544 | 1681 | 5.353400 | CGCATCTTATAGCATCACATCCAAT | 59.647 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
1545 | 1682 | 6.552629 | GCATCTTATAGCATCACATCCAATG | 58.447 | 40.000 | 0.00 | 0.00 | 0.00 | 2.82 |
1546 | 1683 | 6.404403 | GCATCTTATAGCATCACATCCAATGG | 60.404 | 42.308 | 0.00 | 0.00 | 33.60 | 3.16 |
1547 | 1684 | 5.005740 | TCTTATAGCATCACATCCAATGGC | 58.994 | 41.667 | 0.00 | 0.00 | 33.60 | 4.40 |
1548 | 1685 | 3.520691 | ATAGCATCACATCCAATGGCT | 57.479 | 42.857 | 0.00 | 0.00 | 33.60 | 4.75 |
1549 | 1686 | 4.645863 | ATAGCATCACATCCAATGGCTA | 57.354 | 40.909 | 0.00 | 0.00 | 33.60 | 3.93 |
1550 | 1687 | 3.520691 | AGCATCACATCCAATGGCTAT | 57.479 | 42.857 | 0.00 | 0.00 | 33.60 | 2.97 |
1551 | 1688 | 4.645863 | AGCATCACATCCAATGGCTATA | 57.354 | 40.909 | 0.00 | 0.00 | 33.60 | 1.31 |
1552 | 1689 | 4.989277 | AGCATCACATCCAATGGCTATAA | 58.011 | 39.130 | 0.00 | 0.00 | 33.60 | 0.98 |
1553 | 1690 | 5.387788 | AGCATCACATCCAATGGCTATAAA | 58.612 | 37.500 | 0.00 | 0.00 | 33.60 | 1.40 |
1554 | 1691 | 5.834742 | AGCATCACATCCAATGGCTATAAAA | 59.165 | 36.000 | 0.00 | 0.00 | 33.60 | 1.52 |
1555 | 1692 | 6.015688 | AGCATCACATCCAATGGCTATAAAAG | 60.016 | 38.462 | 0.00 | 0.00 | 33.60 | 2.27 |
1556 | 1693 | 6.684686 | CATCACATCCAATGGCTATAAAAGG | 58.315 | 40.000 | 0.00 | 0.00 | 33.60 | 3.11 |
1557 | 1694 | 5.765510 | TCACATCCAATGGCTATAAAAGGT | 58.234 | 37.500 | 0.00 | 0.00 | 33.60 | 3.50 |
1558 | 1695 | 5.593909 | TCACATCCAATGGCTATAAAAGGTG | 59.406 | 40.000 | 0.00 | 0.00 | 33.60 | 4.00 |
1559 | 1696 | 5.593909 | CACATCCAATGGCTATAAAAGGTGA | 59.406 | 40.000 | 0.00 | 0.00 | 33.60 | 4.02 |
1560 | 1697 | 6.096705 | CACATCCAATGGCTATAAAAGGTGAA | 59.903 | 38.462 | 0.00 | 0.00 | 33.60 | 3.18 |
1561 | 1698 | 6.840705 | ACATCCAATGGCTATAAAAGGTGAAT | 59.159 | 34.615 | 0.00 | 0.00 | 33.60 | 2.57 |
1562 | 1699 | 6.713762 | TCCAATGGCTATAAAAGGTGAATG | 57.286 | 37.500 | 0.00 | 0.00 | 0.00 | 2.67 |
1563 | 1700 | 6.430864 | TCCAATGGCTATAAAAGGTGAATGA | 58.569 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1564 | 1701 | 6.547141 | TCCAATGGCTATAAAAGGTGAATGAG | 59.453 | 38.462 | 0.00 | 0.00 | 0.00 | 2.90 |
1565 | 1702 | 6.547141 | CCAATGGCTATAAAAGGTGAATGAGA | 59.453 | 38.462 | 0.00 | 0.00 | 0.00 | 3.27 |
1566 | 1703 | 7.420800 | CAATGGCTATAAAAGGTGAATGAGAC | 58.579 | 38.462 | 0.00 | 0.00 | 0.00 | 3.36 |
1567 | 1704 | 5.437060 | TGGCTATAAAAGGTGAATGAGACC | 58.563 | 41.667 | 0.00 | 0.00 | 0.00 | 3.85 |
1568 | 1705 | 5.045213 | TGGCTATAAAAGGTGAATGAGACCA | 60.045 | 40.000 | 0.00 | 0.00 | 35.76 | 4.02 |
1569 | 1706 | 5.885912 | GGCTATAAAAGGTGAATGAGACCAA | 59.114 | 40.000 | 0.00 | 0.00 | 35.76 | 3.67 |
1570 | 1707 | 6.377146 | GGCTATAAAAGGTGAATGAGACCAAA | 59.623 | 38.462 | 0.00 | 0.00 | 35.76 | 3.28 |
1571 | 1708 | 7.251281 | GCTATAAAAGGTGAATGAGACCAAAC | 58.749 | 38.462 | 0.00 | 0.00 | 35.76 | 2.93 |
1572 | 1709 | 7.121315 | GCTATAAAAGGTGAATGAGACCAAACT | 59.879 | 37.037 | 0.00 | 0.00 | 35.76 | 2.66 |
1573 | 1710 | 9.667107 | CTATAAAAGGTGAATGAGACCAAACTA | 57.333 | 33.333 | 0.00 | 0.00 | 35.76 | 2.24 |
1577 | 1714 | 8.738645 | AAAGGTGAATGAGACCAAACTATATC | 57.261 | 34.615 | 0.00 | 0.00 | 35.76 | 1.63 |
1578 | 1715 | 7.682787 | AGGTGAATGAGACCAAACTATATCT | 57.317 | 36.000 | 0.00 | 0.00 | 35.76 | 1.98 |
1579 | 1716 | 7.731054 | AGGTGAATGAGACCAAACTATATCTC | 58.269 | 38.462 | 0.00 | 0.00 | 38.46 | 2.75 |
1816 | 1954 | 8.409371 | TGAACTTGTTAACATAGCATTGTTTGA | 58.591 | 29.630 | 9.56 | 0.00 | 40.25 | 2.69 |
2026 | 2165 | 9.912634 | CTAAGACAAAGGCAAAGATTTATTCAA | 57.087 | 29.630 | 0.00 | 0.00 | 0.00 | 2.69 |
2035 | 2176 | 9.807649 | AGGCAAAGATTTATTCAATATTGTGTC | 57.192 | 29.630 | 14.97 | 3.94 | 29.91 | 3.67 |
2054 | 2195 | 7.539712 | TGTGTCAAGAGAAACTTCTTTACTG | 57.460 | 36.000 | 0.00 | 0.00 | 37.73 | 2.74 |
2056 | 2197 | 5.527582 | TGTCAAGAGAAACTTCTTTACTGCC | 59.472 | 40.000 | 0.00 | 0.00 | 37.73 | 4.85 |
2064 | 2205 | 0.589223 | TTCTTTACTGCCGGTTTGCG | 59.411 | 50.000 | 1.90 | 0.00 | 0.00 | 4.85 |
2067 | 2208 | 1.519751 | TTTACTGCCGGTTTGCGCAT | 61.520 | 50.000 | 12.75 | 0.00 | 33.78 | 4.73 |
2080 | 2221 | 2.793946 | CGCATTCCTGGGCTTTCG | 59.206 | 61.111 | 0.00 | 0.00 | 0.00 | 3.46 |
2153 | 2294 | 3.063997 | ACTTATCATTTCTTTCGGCGCTG | 59.936 | 43.478 | 10.86 | 10.86 | 0.00 | 5.18 |
2362 | 2514 | 9.897744 | CCAATATGTAAGTAAACCATTGCTATG | 57.102 | 33.333 | 0.68 | 0.68 | 30.67 | 2.23 |
2451 | 2603 | 4.202430 | ACGTAAAGAAAGAGGGTGGTCATT | 60.202 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
2474 | 2626 | 4.733165 | AGTTTTTGGGGTTAAGTAGTCCC | 58.267 | 43.478 | 0.00 | 0.00 | 40.41 | 4.46 |
2496 | 2648 | 6.043411 | CCCGATTAGTTTCTTTAGACTCAGG | 58.957 | 44.000 | 0.00 | 0.00 | 0.00 | 3.86 |
2521 | 2673 | 7.121315 | GGTCCTTCTGCTGTAAACAAAATAGAT | 59.879 | 37.037 | 0.00 | 0.00 | 0.00 | 1.98 |
2575 | 2727 | 2.930040 | CGGCGCTCTTTTGATAGAAGAA | 59.070 | 45.455 | 7.64 | 0.00 | 33.10 | 2.52 |
2583 | 2735 | 2.018542 | TTGATAGAAGAAACGGGCGG | 57.981 | 50.000 | 0.00 | 0.00 | 0.00 | 6.13 |
2632 | 2784 | 0.251354 | AGCATTGTGAGAGACGCCAT | 59.749 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
2633 | 2785 | 0.376152 | GCATTGTGAGAGACGCCATG | 59.624 | 55.000 | 0.00 | 0.00 | 35.92 | 3.66 |
2648 | 2800 | 1.705186 | GCCATGGCCTTCCTATTAGGA | 59.295 | 52.381 | 27.24 | 8.42 | 37.66 | 2.94 |
2812 | 2964 | 3.219198 | GCACCCCGGATTCATGCC | 61.219 | 66.667 | 0.73 | 0.00 | 0.00 | 4.40 |
2854 | 3006 | 0.899717 | ACCGCAATTTGGCCACTCAT | 60.900 | 50.000 | 3.88 | 0.00 | 0.00 | 2.90 |
2973 | 3129 | 2.847327 | ACTACATGCTCAACAGTGCT | 57.153 | 45.000 | 0.00 | 0.00 | 0.00 | 4.40 |
2985 | 3141 | 2.864114 | CAGTGCTAACTGCCATGCT | 58.136 | 52.632 | 0.00 | 0.00 | 46.98 | 3.79 |
3023 | 3179 | 6.127101 | TCCATGTGGTATATCCTACTATCCG | 58.873 | 44.000 | 0.00 | 0.00 | 37.07 | 4.18 |
3248 | 3412 | 5.051891 | CAATCCCTGCGATATTGGAAATC | 57.948 | 43.478 | 0.00 | 0.00 | 0.00 | 2.17 |
3320 | 3484 | 4.377431 | CGTGTGAAGTATCTGTTTTCTGCC | 60.377 | 45.833 | 0.00 | 0.00 | 0.00 | 4.85 |
3450 | 3614 | 4.380843 | TTCATACCATTCTGTTGTGGGT | 57.619 | 40.909 | 0.00 | 0.00 | 39.86 | 4.51 |
3594 | 3762 | 5.163353 | TGCCATAGACTTGATTCCGAATGTA | 60.163 | 40.000 | 0.00 | 0.00 | 0.00 | 2.29 |
3719 | 3888 | 0.178995 | TGGCTGCTGTTGAACCATGA | 60.179 | 50.000 | 0.00 | 0.00 | 0.00 | 3.07 |
3750 | 3935 | 5.403897 | TGAAACAGTTTTGCTAAGTCTCG | 57.596 | 39.130 | 0.00 | 0.00 | 0.00 | 4.04 |
3756 | 3941 | 5.107065 | ACAGTTTTGCTAAGTCTCGTTATGC | 60.107 | 40.000 | 0.00 | 0.00 | 0.00 | 3.14 |
3760 | 3945 | 3.521560 | TGCTAAGTCTCGTTATGCCTTG | 58.478 | 45.455 | 0.00 | 0.00 | 0.00 | 3.61 |
3775 | 3961 | 3.078837 | TGCCTTGGTCGAATTCCTTTAC | 58.921 | 45.455 | 0.00 | 0.00 | 0.00 | 2.01 |
3829 | 4169 | 8.371770 | TCTTCAGTTTTTCTTCTTCTTAGAGC | 57.628 | 34.615 | 0.00 | 0.00 | 0.00 | 4.09 |
3830 | 4170 | 7.987458 | TCTTCAGTTTTTCTTCTTCTTAGAGCA | 59.013 | 33.333 | 0.00 | 0.00 | 0.00 | 4.26 |
3831 | 4171 | 8.682936 | TTCAGTTTTTCTTCTTCTTAGAGCAT | 57.317 | 30.769 | 0.00 | 0.00 | 0.00 | 3.79 |
3832 | 4172 | 8.316640 | TCAGTTTTTCTTCTTCTTAGAGCATC | 57.683 | 34.615 | 0.00 | 0.00 | 0.00 | 3.91 |
3843 | 4183 | 4.522971 | GAGCATCTCCACCCGTTC | 57.477 | 61.111 | 0.00 | 0.00 | 0.00 | 3.95 |
3844 | 4184 | 1.596934 | GAGCATCTCCACCCGTTCA | 59.403 | 57.895 | 0.00 | 0.00 | 0.00 | 3.18 |
3845 | 4185 | 0.460987 | GAGCATCTCCACCCGTTCAG | 60.461 | 60.000 | 0.00 | 0.00 | 0.00 | 3.02 |
3846 | 4186 | 2.109126 | GCATCTCCACCCGTTCAGC | 61.109 | 63.158 | 0.00 | 0.00 | 0.00 | 4.26 |
3847 | 4187 | 1.450312 | CATCTCCACCCGTTCAGCC | 60.450 | 63.158 | 0.00 | 0.00 | 0.00 | 4.85 |
3848 | 4188 | 2.670148 | ATCTCCACCCGTTCAGCCC | 61.670 | 63.158 | 0.00 | 0.00 | 0.00 | 5.19 |
3849 | 4189 | 4.410400 | CTCCACCCGTTCAGCCCC | 62.410 | 72.222 | 0.00 | 0.00 | 0.00 | 5.80 |
3895 | 4235 | 2.759973 | CCTAGCTCCCAGCCACGA | 60.760 | 66.667 | 0.00 | 0.00 | 43.77 | 4.35 |
3928 | 4271 | 1.714899 | CCCTAGCCACGGCAAATTCG | 61.715 | 60.000 | 11.35 | 0.00 | 44.88 | 3.34 |
3950 | 4294 | 1.227556 | GTAGTCCATTCCCGCGCAT | 60.228 | 57.895 | 8.75 | 0.00 | 0.00 | 4.73 |
3958 | 4302 | 2.095263 | CCATTCCCGCGCATAAAATAGG | 60.095 | 50.000 | 8.75 | 0.00 | 0.00 | 2.57 |
3972 | 4316 | 2.265467 | AATAGGCGCCACAATCCGGT | 62.265 | 55.000 | 31.54 | 6.76 | 0.00 | 5.28 |
4048 | 4395 | 4.760047 | AGGACGGAAGCGCGCATT | 62.760 | 61.111 | 35.10 | 23.57 | 0.00 | 3.56 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
16 | 17 | 3.991683 | AGGAACGGAGGGAGTAGTTAAT | 58.008 | 45.455 | 0.00 | 0.00 | 0.00 | 1.40 |
43 | 44 | 6.317789 | TGTTGAAATGCCTAGAAAGACAAG | 57.682 | 37.500 | 0.00 | 0.00 | 0.00 | 3.16 |
49 | 50 | 5.827797 | AGTCACTTGTTGAAATGCCTAGAAA | 59.172 | 36.000 | 0.00 | 0.00 | 35.39 | 2.52 |
52 | 53 | 5.700832 | TGTAGTCACTTGTTGAAATGCCTAG | 59.299 | 40.000 | 0.00 | 0.00 | 35.39 | 3.02 |
57 | 58 | 6.367695 | TCCGTATGTAGTCACTTGTTGAAATG | 59.632 | 38.462 | 0.00 | 0.00 | 35.39 | 2.32 |
65 | 66 | 3.503827 | TGCTCCGTATGTAGTCACTTG | 57.496 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
66 | 67 | 4.530710 | TTTGCTCCGTATGTAGTCACTT | 57.469 | 40.909 | 0.00 | 0.00 | 0.00 | 3.16 |
67 | 68 | 4.530710 | TTTTGCTCCGTATGTAGTCACT | 57.469 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
69 | 70 | 5.079689 | TCATTTTGCTCCGTATGTAGTCA | 57.920 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
70 | 71 | 5.005779 | CACTCATTTTGCTCCGTATGTAGTC | 59.994 | 44.000 | 0.00 | 0.00 | 0.00 | 2.59 |
71 | 72 | 4.870426 | CACTCATTTTGCTCCGTATGTAGT | 59.130 | 41.667 | 0.00 | 0.00 | 0.00 | 2.73 |
72 | 73 | 5.109210 | TCACTCATTTTGCTCCGTATGTAG | 58.891 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
74 | 75 | 3.937814 | TCACTCATTTTGCTCCGTATGT | 58.062 | 40.909 | 0.00 | 0.00 | 0.00 | 2.29 |
75 | 76 | 4.944962 | TTCACTCATTTTGCTCCGTATG | 57.055 | 40.909 | 0.00 | 0.00 | 0.00 | 2.39 |
76 | 77 | 5.431765 | AGATTCACTCATTTTGCTCCGTAT | 58.568 | 37.500 | 0.00 | 0.00 | 0.00 | 3.06 |
77 | 78 | 4.832248 | AGATTCACTCATTTTGCTCCGTA | 58.168 | 39.130 | 0.00 | 0.00 | 0.00 | 4.02 |
78 | 79 | 3.679389 | AGATTCACTCATTTTGCTCCGT | 58.321 | 40.909 | 0.00 | 0.00 | 0.00 | 4.69 |
79 | 80 | 4.631377 | TGTAGATTCACTCATTTTGCTCCG | 59.369 | 41.667 | 0.00 | 0.00 | 0.00 | 4.63 |
80 | 81 | 5.645497 | AGTGTAGATTCACTCATTTTGCTCC | 59.355 | 40.000 | 0.00 | 0.00 | 44.07 | 4.70 |
152 | 154 | 9.595823 | TCCGTTCCTAAATATTTGTCTTTCTAG | 57.404 | 33.333 | 11.05 | 0.00 | 0.00 | 2.43 |
155 | 157 | 7.201705 | CCCTCCGTTCCTAAATATTTGTCTTTC | 60.202 | 40.741 | 11.05 | 0.00 | 0.00 | 2.62 |
172 | 174 | 5.855045 | ACATGATTAATACTCCCTCCGTTC | 58.145 | 41.667 | 0.00 | 0.00 | 0.00 | 3.95 |
208 | 210 | 2.416747 | GCTCAGTTGATGCACTACACA | 58.583 | 47.619 | 0.00 | 0.00 | 0.00 | 3.72 |
224 | 226 | 2.734723 | GTGACTTGCGCTCGCTCA | 60.735 | 61.111 | 9.73 | 8.06 | 42.51 | 4.26 |
247 | 249 | 6.349694 | GCACTAGGGAAGAAATTTTCCTTGAG | 60.350 | 42.308 | 0.00 | 6.38 | 44.90 | 3.02 |
251 | 253 | 4.998051 | TGCACTAGGGAAGAAATTTTCCT | 58.002 | 39.130 | 0.00 | 8.18 | 44.90 | 3.36 |
254 | 256 | 3.511540 | GGCTGCACTAGGGAAGAAATTTT | 59.488 | 43.478 | 3.30 | 0.00 | 0.00 | 1.82 |
258 | 260 | 1.003580 | CTGGCTGCACTAGGGAAGAAA | 59.996 | 52.381 | 3.30 | 0.00 | 0.00 | 2.52 |
281 | 283 | 6.607600 | AGAGGTAGTTTGATAGACTGCATACA | 59.392 | 38.462 | 0.00 | 0.00 | 32.25 | 2.29 |
282 | 284 | 6.920758 | CAGAGGTAGTTTGATAGACTGCATAC | 59.079 | 42.308 | 0.00 | 0.00 | 32.25 | 2.39 |
283 | 285 | 6.461648 | GCAGAGGTAGTTTGATAGACTGCATA | 60.462 | 42.308 | 0.00 | 0.00 | 44.65 | 3.14 |
328 | 330 | 5.638234 | GTGACTTAGTTGGACCTGATTGTAC | 59.362 | 44.000 | 0.00 | 0.00 | 0.00 | 2.90 |
342 | 344 | 6.770785 | TGCCTCTTTACATTTGTGACTTAGTT | 59.229 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
375 | 377 | 1.217942 | AGAAACTTTGTGCCCTCCCTT | 59.782 | 47.619 | 0.00 | 0.00 | 0.00 | 3.95 |
376 | 378 | 0.853530 | AGAAACTTTGTGCCCTCCCT | 59.146 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
377 | 379 | 0.961753 | CAGAAACTTTGTGCCCTCCC | 59.038 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
378 | 380 | 1.609072 | GACAGAAACTTTGTGCCCTCC | 59.391 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
379 | 381 | 1.264288 | CGACAGAAACTTTGTGCCCTC | 59.736 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
380 | 382 | 1.308998 | CGACAGAAACTTTGTGCCCT | 58.691 | 50.000 | 0.00 | 0.00 | 0.00 | 5.19 |
399 | 401 | 0.948141 | GAGGGTGCATATGAGCTCGC | 60.948 | 60.000 | 9.64 | 6.81 | 40.06 | 5.03 |
435 | 437 | 6.208644 | TGCTTGCAACTTTTTATGAAGAGAC | 58.791 | 36.000 | 0.00 | 0.00 | 0.00 | 3.36 |
440 | 499 | 6.760298 | TCAACATGCTTGCAACTTTTTATGAA | 59.240 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
450 | 509 | 3.676646 | GGAATTCTCAACATGCTTGCAAC | 59.323 | 43.478 | 5.23 | 0.00 | 0.00 | 4.17 |
464 | 523 | 7.651808 | TCTTGAACAAACATTGAGGAATTCTC | 58.348 | 34.615 | 5.23 | 1.99 | 42.74 | 2.87 |
465 | 524 | 7.587037 | TCTTGAACAAACATTGAGGAATTCT | 57.413 | 32.000 | 5.23 | 0.00 | 0.00 | 2.40 |
466 | 525 | 8.647143 | TTTCTTGAACAAACATTGAGGAATTC | 57.353 | 30.769 | 0.00 | 0.00 | 0.00 | 2.17 |
467 | 526 | 9.447157 | TTTTTCTTGAACAAACATTGAGGAATT | 57.553 | 25.926 | 0.00 | 0.00 | 0.00 | 2.17 |
496 | 555 | 4.774200 | AGGACGTGTTTGGTAGGTAGTATT | 59.226 | 41.667 | 0.00 | 0.00 | 0.00 | 1.89 |
497 | 556 | 4.347607 | AGGACGTGTTTGGTAGGTAGTAT | 58.652 | 43.478 | 0.00 | 0.00 | 0.00 | 2.12 |
499 | 558 | 2.601905 | AGGACGTGTTTGGTAGGTAGT | 58.398 | 47.619 | 0.00 | 0.00 | 0.00 | 2.73 |
548 | 623 | 7.357429 | ACACAAGTACTGTAGTAGGAGTTTT | 57.643 | 36.000 | 0.00 | 0.00 | 36.10 | 2.43 |
549 | 624 | 6.973460 | ACACAAGTACTGTAGTAGGAGTTT | 57.027 | 37.500 | 0.00 | 0.00 | 36.10 | 2.66 |
550 | 625 | 6.973460 | AACACAAGTACTGTAGTAGGAGTT | 57.027 | 37.500 | 0.00 | 1.05 | 36.10 | 3.01 |
588 | 698 | 1.244816 | ACTTCGGTCATGACTCGTGA | 58.755 | 50.000 | 24.50 | 14.46 | 0.00 | 4.35 |
589 | 699 | 2.065993 | AACTTCGGTCATGACTCGTG | 57.934 | 50.000 | 24.50 | 21.05 | 0.00 | 4.35 |
590 | 700 | 2.814280 | AAACTTCGGTCATGACTCGT | 57.186 | 45.000 | 24.50 | 13.39 | 0.00 | 4.18 |
591 | 701 | 3.120649 | GGAAAAACTTCGGTCATGACTCG | 60.121 | 47.826 | 24.50 | 23.54 | 0.00 | 4.18 |
592 | 702 | 3.188667 | GGGAAAAACTTCGGTCATGACTC | 59.811 | 47.826 | 24.50 | 13.90 | 0.00 | 3.36 |
593 | 703 | 3.146847 | GGGAAAAACTTCGGTCATGACT | 58.853 | 45.455 | 24.50 | 2.05 | 0.00 | 3.41 |
594 | 704 | 2.228103 | GGGGAAAAACTTCGGTCATGAC | 59.772 | 50.000 | 17.91 | 17.91 | 0.00 | 3.06 |
671 | 791 | 1.874019 | CGGATCGGAGCAGAACACG | 60.874 | 63.158 | 0.00 | 0.00 | 0.00 | 4.49 |
673 | 793 | 0.385751 | GATCGGATCGGAGCAGAACA | 59.614 | 55.000 | 13.06 | 0.00 | 0.00 | 3.18 |
676 | 796 | 0.109532 | AGAGATCGGATCGGAGCAGA | 59.890 | 55.000 | 19.09 | 0.00 | 0.00 | 4.26 |
695 | 815 | 2.434185 | GATTGCTCGGCCACGACA | 60.434 | 61.111 | 2.24 | 0.00 | 45.59 | 4.35 |
705 | 825 | 0.744771 | GGGAGGAACGTGGATTGCTC | 60.745 | 60.000 | 0.00 | 0.00 | 44.05 | 4.26 |
712 | 832 | 2.359967 | GGAGGAGGGAGGAACGTGG | 61.360 | 68.421 | 0.00 | 0.00 | 0.00 | 4.94 |
823 | 944 | 2.202797 | CAGGCACGGATCCAGACG | 60.203 | 66.667 | 13.41 | 0.00 | 0.00 | 4.18 |
871 | 992 | 8.916654 | CGCATATAAGAAGTTAAATCAGATCGT | 58.083 | 33.333 | 0.00 | 0.00 | 0.00 | 3.73 |
889 | 1011 | 3.118775 | ACAAGAGCTGTGGACGCATATAA | 60.119 | 43.478 | 0.00 | 0.00 | 36.69 | 0.98 |
971 | 1094 | 0.879090 | CTGTCAAAAACCTACCGGCC | 59.121 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
1180 | 1315 | 1.405821 | CGACTCTAGGACGATTGCCTT | 59.594 | 52.381 | 0.00 | 0.00 | 36.96 | 4.35 |
1181 | 1316 | 1.025812 | CGACTCTAGGACGATTGCCT | 58.974 | 55.000 | 0.00 | 0.00 | 39.56 | 4.75 |
1209 | 1344 | 1.323271 | ACACAGACCCGATCGCTGAT | 61.323 | 55.000 | 22.67 | 10.90 | 33.94 | 2.90 |
1219 | 1354 | 1.375523 | CACCGCCTAACACAGACCC | 60.376 | 63.158 | 0.00 | 0.00 | 0.00 | 4.46 |
1263 | 1398 | 3.097921 | ATTACCACGCCCCTACCGC | 62.098 | 63.158 | 0.00 | 0.00 | 0.00 | 5.68 |
1264 | 1399 | 1.227438 | CATTACCACGCCCCTACCG | 60.227 | 63.158 | 0.00 | 0.00 | 0.00 | 4.02 |
1265 | 1400 | 1.069668 | CTACATTACCACGCCCCTACC | 59.930 | 57.143 | 0.00 | 0.00 | 0.00 | 3.18 |
1424 | 1561 | 0.539986 | TAGGCACTCCCGTCAAATCC | 59.460 | 55.000 | 0.00 | 0.00 | 41.75 | 3.01 |
1425 | 1562 | 1.480954 | TCTAGGCACTCCCGTCAAATC | 59.519 | 52.381 | 0.00 | 0.00 | 41.75 | 2.17 |
1426 | 1563 | 1.568504 | TCTAGGCACTCCCGTCAAAT | 58.431 | 50.000 | 0.00 | 0.00 | 41.75 | 2.32 |
1427 | 1564 | 1.001633 | GTTCTAGGCACTCCCGTCAAA | 59.998 | 52.381 | 0.00 | 0.00 | 41.75 | 2.69 |
1428 | 1565 | 0.606604 | GTTCTAGGCACTCCCGTCAA | 59.393 | 55.000 | 0.00 | 0.00 | 41.75 | 3.18 |
1429 | 1566 | 0.251653 | AGTTCTAGGCACTCCCGTCA | 60.252 | 55.000 | 0.00 | 0.00 | 41.75 | 4.35 |
1430 | 1567 | 0.456628 | GAGTTCTAGGCACTCCCGTC | 59.543 | 60.000 | 10.44 | 0.00 | 41.75 | 4.79 |
1431 | 1568 | 0.251653 | TGAGTTCTAGGCACTCCCGT | 60.252 | 55.000 | 16.20 | 0.00 | 40.12 | 5.28 |
1432 | 1569 | 1.067821 | GATGAGTTCTAGGCACTCCCG | 59.932 | 57.143 | 16.20 | 0.00 | 40.12 | 5.14 |
1433 | 1570 | 2.393646 | AGATGAGTTCTAGGCACTCCC | 58.606 | 52.381 | 16.20 | 10.39 | 40.12 | 4.30 |
1463 | 1600 | 9.696917 | GTTTTCAAAGTGATGAGACCAAATTAT | 57.303 | 29.630 | 0.00 | 0.00 | 0.00 | 1.28 |
1464 | 1601 | 8.690884 | TGTTTTCAAAGTGATGAGACCAAATTA | 58.309 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
1465 | 1602 | 7.555087 | TGTTTTCAAAGTGATGAGACCAAATT | 58.445 | 30.769 | 0.00 | 0.00 | 0.00 | 1.82 |
1466 | 1603 | 7.111247 | TGTTTTCAAAGTGATGAGACCAAAT | 57.889 | 32.000 | 0.00 | 0.00 | 0.00 | 2.32 |
1467 | 1604 | 6.522625 | TGTTTTCAAAGTGATGAGACCAAA | 57.477 | 33.333 | 0.00 | 0.00 | 0.00 | 3.28 |
1468 | 1605 | 6.376864 | TCTTGTTTTCAAAGTGATGAGACCAA | 59.623 | 34.615 | 0.00 | 0.00 | 39.47 | 3.67 |
1469 | 1606 | 5.885352 | TCTTGTTTTCAAAGTGATGAGACCA | 59.115 | 36.000 | 0.00 | 0.00 | 39.47 | 4.02 |
1470 | 1607 | 6.377327 | TCTTGTTTTCAAAGTGATGAGACC | 57.623 | 37.500 | 0.00 | 0.00 | 39.47 | 3.85 |
1471 | 1608 | 7.250569 | TGTTCTTGTTTTCAAAGTGATGAGAC | 58.749 | 34.615 | 0.00 | 0.00 | 39.47 | 3.36 |
1472 | 1609 | 7.336679 | TCTGTTCTTGTTTTCAAAGTGATGAGA | 59.663 | 33.333 | 0.00 | 0.00 | 39.47 | 3.27 |
1473 | 1610 | 7.475015 | TCTGTTCTTGTTTTCAAAGTGATGAG | 58.525 | 34.615 | 0.00 | 0.00 | 39.47 | 2.90 |
1474 | 1611 | 7.389803 | TCTGTTCTTGTTTTCAAAGTGATGA | 57.610 | 32.000 | 0.00 | 0.00 | 39.47 | 2.92 |
1475 | 1612 | 9.173939 | GTATCTGTTCTTGTTTTCAAAGTGATG | 57.826 | 33.333 | 0.00 | 0.00 | 39.47 | 3.07 |
1476 | 1613 | 8.902806 | TGTATCTGTTCTTGTTTTCAAAGTGAT | 58.097 | 29.630 | 0.00 | 0.00 | 39.47 | 3.06 |
1477 | 1614 | 8.275015 | TGTATCTGTTCTTGTTTTCAAAGTGA | 57.725 | 30.769 | 0.00 | 0.00 | 39.47 | 3.41 |
1478 | 1615 | 8.798153 | GTTGTATCTGTTCTTGTTTTCAAAGTG | 58.202 | 33.333 | 0.00 | 0.00 | 39.47 | 3.16 |
1479 | 1616 | 7.973944 | GGTTGTATCTGTTCTTGTTTTCAAAGT | 59.026 | 33.333 | 0.00 | 0.00 | 39.47 | 2.66 |
1480 | 1617 | 7.435192 | GGGTTGTATCTGTTCTTGTTTTCAAAG | 59.565 | 37.037 | 0.00 | 0.00 | 39.47 | 2.77 |
1481 | 1618 | 7.093727 | TGGGTTGTATCTGTTCTTGTTTTCAAA | 60.094 | 33.333 | 0.00 | 0.00 | 39.47 | 2.69 |
1482 | 1619 | 6.378564 | TGGGTTGTATCTGTTCTTGTTTTCAA | 59.621 | 34.615 | 0.00 | 0.00 | 38.21 | 2.69 |
1483 | 1620 | 5.888724 | TGGGTTGTATCTGTTCTTGTTTTCA | 59.111 | 36.000 | 0.00 | 0.00 | 0.00 | 2.69 |
1484 | 1621 | 6.183360 | TGTGGGTTGTATCTGTTCTTGTTTTC | 60.183 | 38.462 | 0.00 | 0.00 | 0.00 | 2.29 |
1485 | 1622 | 5.654650 | TGTGGGTTGTATCTGTTCTTGTTTT | 59.345 | 36.000 | 0.00 | 0.00 | 0.00 | 2.43 |
1486 | 1623 | 5.197451 | TGTGGGTTGTATCTGTTCTTGTTT | 58.803 | 37.500 | 0.00 | 0.00 | 0.00 | 2.83 |
1487 | 1624 | 4.787551 | TGTGGGTTGTATCTGTTCTTGTT | 58.212 | 39.130 | 0.00 | 0.00 | 0.00 | 2.83 |
1488 | 1625 | 4.431416 | TGTGGGTTGTATCTGTTCTTGT | 57.569 | 40.909 | 0.00 | 0.00 | 0.00 | 3.16 |
1489 | 1626 | 5.003160 | TGATGTGGGTTGTATCTGTTCTTG | 58.997 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
1490 | 1627 | 5.241403 | TGATGTGGGTTGTATCTGTTCTT | 57.759 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
1491 | 1628 | 4.836825 | CTGATGTGGGTTGTATCTGTTCT | 58.163 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
1492 | 1629 | 3.375299 | GCTGATGTGGGTTGTATCTGTTC | 59.625 | 47.826 | 0.00 | 0.00 | 0.00 | 3.18 |
1493 | 1630 | 3.244875 | TGCTGATGTGGGTTGTATCTGTT | 60.245 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
1494 | 1631 | 2.305635 | TGCTGATGTGGGTTGTATCTGT | 59.694 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
1495 | 1632 | 2.989909 | TGCTGATGTGGGTTGTATCTG | 58.010 | 47.619 | 0.00 | 0.00 | 0.00 | 2.90 |
1496 | 1633 | 3.939740 | ATGCTGATGTGGGTTGTATCT | 57.060 | 42.857 | 0.00 | 0.00 | 0.00 | 1.98 |
1497 | 1634 | 4.273480 | GTGTATGCTGATGTGGGTTGTATC | 59.727 | 45.833 | 0.00 | 0.00 | 0.00 | 2.24 |
1498 | 1635 | 4.199310 | GTGTATGCTGATGTGGGTTGTAT | 58.801 | 43.478 | 0.00 | 0.00 | 0.00 | 2.29 |
1499 | 1636 | 3.605634 | GTGTATGCTGATGTGGGTTGTA | 58.394 | 45.455 | 0.00 | 0.00 | 0.00 | 2.41 |
1500 | 1637 | 2.436417 | GTGTATGCTGATGTGGGTTGT | 58.564 | 47.619 | 0.00 | 0.00 | 0.00 | 3.32 |
1501 | 1638 | 1.398041 | CGTGTATGCTGATGTGGGTTG | 59.602 | 52.381 | 0.00 | 0.00 | 0.00 | 3.77 |
1502 | 1639 | 1.737838 | CGTGTATGCTGATGTGGGTT | 58.262 | 50.000 | 0.00 | 0.00 | 0.00 | 4.11 |
1503 | 1640 | 0.744414 | GCGTGTATGCTGATGTGGGT | 60.744 | 55.000 | 0.00 | 0.00 | 0.00 | 4.51 |
1504 | 1641 | 0.744057 | TGCGTGTATGCTGATGTGGG | 60.744 | 55.000 | 0.00 | 0.00 | 35.36 | 4.61 |
1505 | 1642 | 1.262417 | GATGCGTGTATGCTGATGTGG | 59.738 | 52.381 | 0.00 | 0.00 | 35.36 | 4.17 |
1506 | 1643 | 2.207590 | AGATGCGTGTATGCTGATGTG | 58.792 | 47.619 | 0.00 | 0.00 | 35.36 | 3.21 |
1507 | 1644 | 2.609427 | AGATGCGTGTATGCTGATGT | 57.391 | 45.000 | 0.00 | 0.00 | 35.36 | 3.06 |
1508 | 1645 | 5.220359 | GCTATAAGATGCGTGTATGCTGATG | 60.220 | 44.000 | 0.00 | 0.00 | 35.36 | 3.07 |
1509 | 1646 | 4.867047 | GCTATAAGATGCGTGTATGCTGAT | 59.133 | 41.667 | 0.00 | 0.00 | 35.36 | 2.90 |
1510 | 1647 | 4.237724 | GCTATAAGATGCGTGTATGCTGA | 58.762 | 43.478 | 0.00 | 0.00 | 35.36 | 4.26 |
1511 | 1648 | 3.989817 | TGCTATAAGATGCGTGTATGCTG | 59.010 | 43.478 | 0.00 | 0.00 | 35.36 | 4.41 |
1512 | 1649 | 4.257267 | TGCTATAAGATGCGTGTATGCT | 57.743 | 40.909 | 0.00 | 0.00 | 35.36 | 3.79 |
1513 | 1650 | 4.627035 | TGATGCTATAAGATGCGTGTATGC | 59.373 | 41.667 | 0.00 | 0.00 | 0.00 | 3.14 |
1514 | 1651 | 5.634859 | TGTGATGCTATAAGATGCGTGTATG | 59.365 | 40.000 | 0.00 | 0.00 | 0.00 | 2.39 |
1515 | 1652 | 5.783111 | TGTGATGCTATAAGATGCGTGTAT | 58.217 | 37.500 | 0.00 | 0.00 | 0.00 | 2.29 |
1516 | 1653 | 5.195001 | TGTGATGCTATAAGATGCGTGTA | 57.805 | 39.130 | 0.00 | 0.00 | 0.00 | 2.90 |
1517 | 1654 | 4.058721 | TGTGATGCTATAAGATGCGTGT | 57.941 | 40.909 | 0.00 | 0.00 | 0.00 | 4.49 |
1518 | 1655 | 4.092529 | GGATGTGATGCTATAAGATGCGTG | 59.907 | 45.833 | 0.00 | 0.00 | 0.00 | 5.34 |
1519 | 1656 | 4.248859 | GGATGTGATGCTATAAGATGCGT | 58.751 | 43.478 | 0.00 | 0.00 | 0.00 | 5.24 |
1520 | 1657 | 4.248058 | TGGATGTGATGCTATAAGATGCG | 58.752 | 43.478 | 0.00 | 0.00 | 0.00 | 4.73 |
1521 | 1658 | 6.404403 | CCATTGGATGTGATGCTATAAGATGC | 60.404 | 42.308 | 0.00 | 0.00 | 0.00 | 3.91 |
1522 | 1659 | 6.404403 | GCCATTGGATGTGATGCTATAAGATG | 60.404 | 42.308 | 6.95 | 0.00 | 0.00 | 2.90 |
1523 | 1660 | 5.651139 | GCCATTGGATGTGATGCTATAAGAT | 59.349 | 40.000 | 6.95 | 0.00 | 0.00 | 2.40 |
1524 | 1661 | 5.005740 | GCCATTGGATGTGATGCTATAAGA | 58.994 | 41.667 | 6.95 | 0.00 | 0.00 | 2.10 |
1525 | 1662 | 5.008331 | AGCCATTGGATGTGATGCTATAAG | 58.992 | 41.667 | 6.95 | 0.00 | 0.00 | 1.73 |
1526 | 1663 | 4.989277 | AGCCATTGGATGTGATGCTATAA | 58.011 | 39.130 | 6.95 | 0.00 | 0.00 | 0.98 |
1527 | 1664 | 4.645863 | AGCCATTGGATGTGATGCTATA | 57.354 | 40.909 | 6.95 | 0.00 | 0.00 | 1.31 |
1528 | 1665 | 3.520691 | AGCCATTGGATGTGATGCTAT | 57.479 | 42.857 | 6.95 | 0.00 | 0.00 | 2.97 |
1529 | 1666 | 4.645863 | ATAGCCATTGGATGTGATGCTA | 57.354 | 40.909 | 6.95 | 0.00 | 0.00 | 3.49 |
1530 | 1667 | 3.520691 | ATAGCCATTGGATGTGATGCT | 57.479 | 42.857 | 6.95 | 0.00 | 0.00 | 3.79 |
1531 | 1668 | 5.710513 | TTTATAGCCATTGGATGTGATGC | 57.289 | 39.130 | 6.95 | 0.00 | 0.00 | 3.91 |
1532 | 1669 | 6.266103 | ACCTTTTATAGCCATTGGATGTGATG | 59.734 | 38.462 | 6.95 | 0.00 | 0.00 | 3.07 |
1533 | 1670 | 6.266103 | CACCTTTTATAGCCATTGGATGTGAT | 59.734 | 38.462 | 6.95 | 0.00 | 0.00 | 3.06 |
1534 | 1671 | 5.593909 | CACCTTTTATAGCCATTGGATGTGA | 59.406 | 40.000 | 6.95 | 0.00 | 0.00 | 3.58 |
1535 | 1672 | 5.593909 | TCACCTTTTATAGCCATTGGATGTG | 59.406 | 40.000 | 6.95 | 2.95 | 0.00 | 3.21 |
1536 | 1673 | 5.765510 | TCACCTTTTATAGCCATTGGATGT | 58.234 | 37.500 | 6.95 | 0.10 | 0.00 | 3.06 |
1537 | 1674 | 6.713762 | TTCACCTTTTATAGCCATTGGATG | 57.286 | 37.500 | 6.95 | 0.00 | 0.00 | 3.51 |
1538 | 1675 | 7.068702 | TCATTCACCTTTTATAGCCATTGGAT | 58.931 | 34.615 | 6.95 | 1.78 | 0.00 | 3.41 |
1539 | 1676 | 6.430864 | TCATTCACCTTTTATAGCCATTGGA | 58.569 | 36.000 | 6.95 | 0.00 | 0.00 | 3.53 |
1540 | 1677 | 6.547141 | TCTCATTCACCTTTTATAGCCATTGG | 59.453 | 38.462 | 0.00 | 0.00 | 0.00 | 3.16 |
1541 | 1678 | 7.420800 | GTCTCATTCACCTTTTATAGCCATTG | 58.579 | 38.462 | 0.00 | 0.00 | 0.00 | 2.82 |
1542 | 1679 | 6.547510 | GGTCTCATTCACCTTTTATAGCCATT | 59.452 | 38.462 | 0.00 | 0.00 | 0.00 | 3.16 |
1543 | 1680 | 6.064717 | GGTCTCATTCACCTTTTATAGCCAT | 58.935 | 40.000 | 0.00 | 0.00 | 0.00 | 4.40 |
1544 | 1681 | 5.045213 | TGGTCTCATTCACCTTTTATAGCCA | 60.045 | 40.000 | 0.00 | 0.00 | 34.66 | 4.75 |
1545 | 1682 | 5.437060 | TGGTCTCATTCACCTTTTATAGCC | 58.563 | 41.667 | 0.00 | 0.00 | 34.66 | 3.93 |
1546 | 1683 | 7.121315 | AGTTTGGTCTCATTCACCTTTTATAGC | 59.879 | 37.037 | 0.00 | 0.00 | 34.66 | 2.97 |
1547 | 1684 | 8.567285 | AGTTTGGTCTCATTCACCTTTTATAG | 57.433 | 34.615 | 0.00 | 0.00 | 34.66 | 1.31 |
1551 | 1688 | 9.178758 | GATATAGTTTGGTCTCATTCACCTTTT | 57.821 | 33.333 | 0.00 | 0.00 | 34.66 | 2.27 |
1552 | 1689 | 8.552296 | AGATATAGTTTGGTCTCATTCACCTTT | 58.448 | 33.333 | 0.00 | 0.00 | 34.66 | 3.11 |
1553 | 1690 | 8.095452 | AGATATAGTTTGGTCTCATTCACCTT | 57.905 | 34.615 | 0.00 | 0.00 | 34.66 | 3.50 |
1554 | 1691 | 7.345653 | TGAGATATAGTTTGGTCTCATTCACCT | 59.654 | 37.037 | 0.16 | 0.00 | 41.40 | 4.00 |
1555 | 1692 | 7.500992 | TGAGATATAGTTTGGTCTCATTCACC | 58.499 | 38.462 | 0.16 | 0.00 | 41.40 | 4.02 |
1583 | 1720 | 5.483937 | TCCCAGTTTTGCTAGAACTCATCTA | 59.516 | 40.000 | 0.00 | 0.00 | 39.71 | 1.98 |
1584 | 1721 | 4.287067 | TCCCAGTTTTGCTAGAACTCATCT | 59.713 | 41.667 | 0.00 | 0.00 | 42.48 | 2.90 |
1585 | 1722 | 4.579869 | TCCCAGTTTTGCTAGAACTCATC | 58.420 | 43.478 | 0.00 | 0.00 | 35.26 | 2.92 |
1586 | 1723 | 4.640771 | TCCCAGTTTTGCTAGAACTCAT | 57.359 | 40.909 | 0.00 | 0.00 | 35.26 | 2.90 |
1587 | 1724 | 4.640771 | ATCCCAGTTTTGCTAGAACTCA | 57.359 | 40.909 | 0.00 | 0.00 | 35.26 | 3.41 |
1588 | 1725 | 5.473504 | TCAAATCCCAGTTTTGCTAGAACTC | 59.526 | 40.000 | 0.00 | 0.00 | 35.26 | 3.01 |
1589 | 1726 | 5.241728 | GTCAAATCCCAGTTTTGCTAGAACT | 59.758 | 40.000 | 0.00 | 0.00 | 37.82 | 3.01 |
1590 | 1727 | 5.009610 | TGTCAAATCCCAGTTTTGCTAGAAC | 59.990 | 40.000 | 0.00 | 0.00 | 34.73 | 3.01 |
1591 | 1728 | 5.136828 | TGTCAAATCCCAGTTTTGCTAGAA | 58.863 | 37.500 | 0.00 | 0.00 | 34.73 | 2.10 |
1592 | 1729 | 4.724399 | TGTCAAATCCCAGTTTTGCTAGA | 58.276 | 39.130 | 0.00 | 0.00 | 34.73 | 2.43 |
1593 | 1730 | 5.222631 | GTTGTCAAATCCCAGTTTTGCTAG | 58.777 | 41.667 | 0.00 | 0.00 | 34.73 | 3.42 |
1594 | 1731 | 4.261405 | CGTTGTCAAATCCCAGTTTTGCTA | 60.261 | 41.667 | 0.00 | 0.00 | 34.73 | 3.49 |
1595 | 1732 | 3.490761 | CGTTGTCAAATCCCAGTTTTGCT | 60.491 | 43.478 | 0.00 | 0.00 | 34.73 | 3.91 |
1596 | 1733 | 2.794350 | CGTTGTCAAATCCCAGTTTTGC | 59.206 | 45.455 | 0.00 | 0.00 | 34.73 | 3.68 |
1597 | 1734 | 4.300189 | TCGTTGTCAAATCCCAGTTTTG | 57.700 | 40.909 | 0.00 | 0.00 | 35.79 | 2.44 |
1598 | 1735 | 4.993029 | TTCGTTGTCAAATCCCAGTTTT | 57.007 | 36.364 | 0.00 | 0.00 | 0.00 | 2.43 |
1599 | 1736 | 4.993029 | TTTCGTTGTCAAATCCCAGTTT | 57.007 | 36.364 | 0.00 | 0.00 | 0.00 | 2.66 |
1600 | 1737 | 4.993029 | TTTTCGTTGTCAAATCCCAGTT | 57.007 | 36.364 | 0.00 | 0.00 | 0.00 | 3.16 |
1601 | 1738 | 6.642707 | TTATTTTCGTTGTCAAATCCCAGT | 57.357 | 33.333 | 0.00 | 0.00 | 0.00 | 4.00 |
1602 | 1739 | 7.598493 | ACATTTATTTTCGTTGTCAAATCCCAG | 59.402 | 33.333 | 0.00 | 0.00 | 0.00 | 4.45 |
1603 | 1740 | 7.437748 | ACATTTATTTTCGTTGTCAAATCCCA | 58.562 | 30.769 | 0.00 | 0.00 | 0.00 | 4.37 |
1604 | 1741 | 7.883229 | ACATTTATTTTCGTTGTCAAATCCC | 57.117 | 32.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1647 | 1785 | 1.331075 | GCGCTTTGCTTGTCAAAAACG | 60.331 | 47.619 | 0.00 | 7.61 | 43.44 | 3.60 |
1868 | 2006 | 3.529533 | TGTTGGCAACCATTCAACAAAG | 58.470 | 40.909 | 26.31 | 0.00 | 44.94 | 2.77 |
2000 | 2139 | 9.912634 | TTGAATAAATCTTTGCCTTTGTCTTAG | 57.087 | 29.630 | 0.00 | 0.00 | 0.00 | 2.18 |
2035 | 2176 | 4.083802 | CCGGCAGTAAAGAAGTTTCTCTTG | 60.084 | 45.833 | 0.00 | 0.00 | 35.79 | 3.02 |
2054 | 2195 | 3.747976 | AGGAATGCGCAAACCGGC | 61.748 | 61.111 | 17.11 | 0.00 | 37.44 | 6.13 |
2056 | 2197 | 2.179018 | CCAGGAATGCGCAAACCG | 59.821 | 61.111 | 17.11 | 15.75 | 40.75 | 4.44 |
2064 | 2205 | 0.960364 | TGACGAAAGCCCAGGAATGC | 60.960 | 55.000 | 0.00 | 0.00 | 0.00 | 3.56 |
2067 | 2208 | 2.286365 | ATTTGACGAAAGCCCAGGAA | 57.714 | 45.000 | 0.00 | 0.00 | 0.00 | 3.36 |
2153 | 2294 | 2.549754 | AGCAGCAACATAACAGACACAC | 59.450 | 45.455 | 0.00 | 0.00 | 0.00 | 3.82 |
2238 | 2390 | 1.950216 | TGTAAGATGGCGCACACAAAA | 59.050 | 42.857 | 10.83 | 0.00 | 0.00 | 2.44 |
2239 | 2391 | 1.535028 | CTGTAAGATGGCGCACACAAA | 59.465 | 47.619 | 10.83 | 0.00 | 34.07 | 2.83 |
2240 | 2392 | 1.155889 | CTGTAAGATGGCGCACACAA | 58.844 | 50.000 | 10.83 | 0.00 | 34.07 | 3.33 |
2250 | 2402 | 6.019075 | TGTTTCACTGTCGTTTCTGTAAGATG | 60.019 | 38.462 | 0.00 | 0.00 | 46.36 | 2.90 |
2256 | 2408 | 3.857052 | TCTGTTTCACTGTCGTTTCTGT | 58.143 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
2451 | 2603 | 5.512921 | CGGGACTACTTAACCCCAAAAACTA | 60.513 | 44.000 | 0.00 | 0.00 | 40.43 | 2.24 |
2474 | 2626 | 6.752815 | GGACCTGAGTCTAAAGAAACTAATCG | 59.247 | 42.308 | 0.00 | 0.00 | 43.05 | 3.34 |
2496 | 2648 | 7.435068 | TCTATTTTGTTTACAGCAGAAGGAC | 57.565 | 36.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2521 | 2673 | 2.045561 | TTTGAGTTTCAACGGCCTCA | 57.954 | 45.000 | 0.00 | 0.00 | 35.89 | 3.86 |
2556 | 2708 | 4.327024 | CGTTTCTTCTATCAAAAGAGCGC | 58.673 | 43.478 | 0.00 | 0.00 | 34.42 | 5.92 |
2557 | 2709 | 4.201724 | CCCGTTTCTTCTATCAAAAGAGCG | 60.202 | 45.833 | 0.00 | 0.00 | 34.42 | 5.03 |
2558 | 2710 | 4.437524 | GCCCGTTTCTTCTATCAAAAGAGC | 60.438 | 45.833 | 0.00 | 0.00 | 34.42 | 4.09 |
2583 | 2735 | 2.405172 | GACAGTTTGGAACGAGAGGAC | 58.595 | 52.381 | 0.00 | 0.00 | 36.23 | 3.85 |
2648 | 2800 | 6.119536 | TCTCCGCCATAAAGTCATAAACATT | 58.880 | 36.000 | 0.00 | 0.00 | 0.00 | 2.71 |
2658 | 2810 | 1.906574 | TCAACCTCTCCGCCATAAAGT | 59.093 | 47.619 | 0.00 | 0.00 | 0.00 | 2.66 |
2710 | 2862 | 0.324645 | GGGACCAATCCTTGTGGCAT | 60.325 | 55.000 | 0.00 | 0.00 | 45.46 | 4.40 |
2869 | 3021 | 3.358932 | ATAGGGTTTGGGCCGCCAG | 62.359 | 63.158 | 12.58 | 0.00 | 0.00 | 4.85 |
2870 | 3022 | 3.343326 | ATAGGGTTTGGGCCGCCA | 61.343 | 61.111 | 12.58 | 0.00 | 0.00 | 5.69 |
2973 | 3129 | 2.093181 | ACCGTCATTAGCATGGCAGTTA | 60.093 | 45.455 | 0.00 | 0.00 | 34.30 | 2.24 |
2985 | 3141 | 2.682352 | CACATGGATGCAACCGTCATTA | 59.318 | 45.455 | 4.45 | 0.00 | 0.00 | 1.90 |
3023 | 3179 | 9.730420 | TGCTTTTTGACTTTCTTCTAATGTTAC | 57.270 | 29.630 | 0.00 | 0.00 | 0.00 | 2.50 |
3145 | 3309 | 9.740710 | AAGAAACATGTAATAAGAAGCTAACCT | 57.259 | 29.630 | 0.00 | 0.00 | 0.00 | 3.50 |
3248 | 3412 | 0.855598 | ATGGATGGTCCTTGGATGGG | 59.144 | 55.000 | 0.00 | 0.00 | 37.46 | 4.00 |
3320 | 3484 | 2.455032 | CTATCAGAAGCAACCGAGTCG | 58.545 | 52.381 | 5.29 | 5.29 | 0.00 | 4.18 |
3450 | 3614 | 6.811253 | AATTGTTTACTCCTTATTCGTGCA | 57.189 | 33.333 | 0.00 | 0.00 | 0.00 | 4.57 |
3594 | 3762 | 5.022282 | ACAATTTGCAAGGTAAAGCTTGT | 57.978 | 34.783 | 19.74 | 1.31 | 33.49 | 3.16 |
3750 | 3935 | 3.279434 | AGGAATTCGACCAAGGCATAAC | 58.721 | 45.455 | 0.00 | 0.00 | 0.00 | 1.89 |
3756 | 3941 | 2.095372 | GCGTAAAGGAATTCGACCAAGG | 59.905 | 50.000 | 0.00 | 0.00 | 0.00 | 3.61 |
3760 | 3945 | 2.475685 | GCAAGCGTAAAGGAATTCGACC | 60.476 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
3775 | 3961 | 4.514545 | TTTACGAATCTACATGCAAGCG | 57.485 | 40.909 | 0.00 | 0.00 | 0.00 | 4.68 |
3816 | 4156 | 4.442753 | GGGTGGAGATGCTCTAAGAAGAAG | 60.443 | 50.000 | 0.00 | 0.00 | 0.00 | 2.85 |
3819 | 4159 | 2.223923 | CGGGTGGAGATGCTCTAAGAAG | 60.224 | 54.545 | 0.00 | 0.00 | 0.00 | 2.85 |
3820 | 4160 | 1.757118 | CGGGTGGAGATGCTCTAAGAA | 59.243 | 52.381 | 0.00 | 0.00 | 0.00 | 2.52 |
3822 | 4162 | 1.115467 | ACGGGTGGAGATGCTCTAAG | 58.885 | 55.000 | 0.00 | 0.00 | 0.00 | 2.18 |
3823 | 4163 | 1.480954 | GAACGGGTGGAGATGCTCTAA | 59.519 | 52.381 | 0.00 | 0.00 | 0.00 | 2.10 |
3824 | 4164 | 1.112113 | GAACGGGTGGAGATGCTCTA | 58.888 | 55.000 | 0.00 | 0.00 | 0.00 | 2.43 |
3825 | 4165 | 0.904865 | TGAACGGGTGGAGATGCTCT | 60.905 | 55.000 | 0.00 | 0.00 | 0.00 | 4.09 |
3826 | 4166 | 0.460987 | CTGAACGGGTGGAGATGCTC | 60.461 | 60.000 | 0.00 | 0.00 | 0.00 | 4.26 |
3827 | 4167 | 1.599047 | CTGAACGGGTGGAGATGCT | 59.401 | 57.895 | 0.00 | 0.00 | 0.00 | 3.79 |
3828 | 4168 | 2.109126 | GCTGAACGGGTGGAGATGC | 61.109 | 63.158 | 0.00 | 0.00 | 0.00 | 3.91 |
3829 | 4169 | 1.450312 | GGCTGAACGGGTGGAGATG | 60.450 | 63.158 | 0.00 | 0.00 | 0.00 | 2.90 |
3830 | 4170 | 2.670148 | GGGCTGAACGGGTGGAGAT | 61.670 | 63.158 | 0.00 | 0.00 | 0.00 | 2.75 |
3831 | 4171 | 3.319198 | GGGCTGAACGGGTGGAGA | 61.319 | 66.667 | 0.00 | 0.00 | 0.00 | 3.71 |
3832 | 4172 | 4.410400 | GGGGCTGAACGGGTGGAG | 62.410 | 72.222 | 0.00 | 0.00 | 0.00 | 3.86 |
3848 | 4188 | 3.631046 | GCCGATCTAGCCCTGGGG | 61.631 | 72.222 | 16.03 | 4.75 | 38.57 | 4.96 |
3849 | 4189 | 3.631046 | GGCCGATCTAGCCCTGGG | 61.631 | 72.222 | 8.86 | 8.86 | 45.16 | 4.45 |
3912 | 4254 | 0.800012 | GTTCGAATTTGCCGTGGCTA | 59.200 | 50.000 | 12.84 | 0.89 | 42.51 | 3.93 |
3928 | 4271 | 1.143969 | CGCGGGAATGGACTACGTTC | 61.144 | 60.000 | 0.00 | 0.00 | 43.05 | 3.95 |
3950 | 4294 | 1.944024 | CGGATTGTGGCGCCTATTTTA | 59.056 | 47.619 | 29.70 | 1.94 | 0.00 | 1.52 |
3958 | 4302 | 2.823829 | GATCACCGGATTGTGGCGC | 61.824 | 63.158 | 9.46 | 0.00 | 36.87 | 6.53 |
3972 | 4316 | 1.264749 | ACCTACTGGCCGCTTGATCA | 61.265 | 55.000 | 0.00 | 0.00 | 36.63 | 2.92 |
4220 | 4592 | 0.832135 | TGAACCAGCTTCCCTCGACT | 60.832 | 55.000 | 0.00 | 0.00 | 0.00 | 4.18 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.