Multiple sequence alignment - TraesCS3B01G224600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G224600 chr3B 100.000 6476 0 0 1 6476 304973871 304967396 0.000000e+00 11960.0
1 TraesCS3B01G224600 chr3B 79.355 155 24 7 173 323 19041030 19040880 1.150000e-17 102.0
2 TraesCS3B01G224600 chr3A 95.795 6135 153 30 1 6086 331623297 331617219 0.000000e+00 9803.0
3 TraesCS3B01G224600 chr3A 87.500 312 28 8 6139 6446 331612082 331611778 3.720000e-92 350.0
4 TraesCS3B01G224600 chr3A 82.203 118 17 4 6 119 179351765 179351882 1.490000e-16 99.0
5 TraesCS3B01G224600 chr3A 100.000 43 0 0 6100 6142 331617233 331617191 5.380000e-11 80.5
6 TraesCS3B01G224600 chr3D 96.128 5398 124 29 744 6086 252841516 252846883 0.000000e+00 8732.0
7 TraesCS3B01G224600 chr3D 87.791 172 18 1 6305 6473 252847313 252847484 1.420000e-46 198.0
8 TraesCS3B01G224600 chr3D 94.262 122 4 2 1 119 252841352 252841473 3.990000e-42 183.0
9 TraesCS3B01G224600 chr3D 96.774 62 2 0 6220 6281 252846921 252846982 3.190000e-18 104.0
10 TraesCS3B01G224600 chr3D 95.000 60 2 1 6100 6158 252846869 252846928 6.910000e-15 93.5
11 TraesCS3B01G224600 chr5D 84.371 851 76 29 4769 5605 382379609 382380416 0.000000e+00 782.0
12 TraesCS3B01G224600 chr2B 79.639 388 48 16 320 705 708204241 708204599 3.880000e-62 250.0
13 TraesCS3B01G224600 chr2B 78.882 161 23 9 175 329 103398956 103398801 1.490000e-16 99.0
14 TraesCS3B01G224600 chr4B 78.218 404 67 16 320 719 615079680 615079294 8.390000e-59 239.0
15 TraesCS3B01G224600 chr4B 85.714 168 23 1 321 488 91325745 91325911 6.670000e-40 176.0
16 TraesCS3B01G224600 chr4B 81.890 127 13 8 1 119 91325591 91325715 1.490000e-16 99.0
17 TraesCS3B01G224600 chr7A 92.199 141 11 0 179 319 638240608 638240748 3.960000e-47 200.0
18 TraesCS3B01G224600 chr5B 84.656 189 22 6 320 507 450088869 450088687 1.430000e-41 182.0
19 TraesCS3B01G224600 chr5B 85.207 169 24 1 320 488 504682654 504682821 8.630000e-39 172.0
20 TraesCS3B01G224600 chr5B 81.119 143 19 8 6 140 91888522 91888664 2.470000e-19 108.0
21 TraesCS3B01G224600 chr5B 85.714 56 5 2 583 637 33619361 33619414 1.000000e-03 56.5
22 TraesCS3B01G224600 chr4A 85.366 164 19 5 329 489 118990640 118990801 1.440000e-36 165.0
23 TraesCS3B01G224600 chr4A 85.811 148 20 1 321 467 713851157 713851010 8.690000e-34 156.0
24 TraesCS3B01G224600 chr4A 82.569 109 13 4 13 116 323888241 323888348 2.490000e-14 91.6
25 TraesCS3B01G224600 chr7D 84.024 169 23 4 320 488 617123007 617123171 6.720000e-35 159.0
26 TraesCS3B01G224600 chr7D 83.721 172 18 9 320 489 471205969 471206132 3.130000e-33 154.0
27 TraesCS3B01G224600 chr4D 87.023 131 9 7 1 123 346475784 346475654 2.430000e-29 141.0
28 TraesCS3B01G224600 chr5A 81.944 144 14 11 6 141 663911210 663911071 1.910000e-20 111.0
29 TraesCS3B01G224600 chr5A 79.562 137 25 3 179 313 394523165 394523300 1.920000e-15 95.3
30 TraesCS3B01G224600 chr5A 79.562 137 25 3 179 313 533846620 533846755 1.920000e-15 95.3
31 TraesCS3B01G224600 chr6B 79.856 139 25 3 177 313 374967598 374967735 1.490000e-16 99.0
32 TraesCS3B01G224600 chr1B 79.562 137 25 3 179 313 550418284 550418419 1.920000e-15 95.3
33 TraesCS3B01G224600 chr1B 93.478 46 3 0 3852 3897 636481294 636481249 1.170000e-07 69.4
34 TraesCS3B01G224600 chr1A 79.851 134 24 3 182 313 576882749 576882617 1.920000e-15 95.3
35 TraesCS3B01G224600 chr6A 100.000 31 0 0 146 176 525263605 525263575 2.520000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G224600 chr3B 304967396 304973871 6475 True 11960.00 11960 100.0000 1 6476 1 chr3B.!!$R2 6475
1 TraesCS3B01G224600 chr3A 331617191 331623297 6106 True 4941.75 9803 97.8975 1 6142 2 chr3A.!!$R2 6141
2 TraesCS3B01G224600 chr3D 252841352 252847484 6132 False 1862.10 8732 93.9910 1 6473 5 chr3D.!!$F1 6472
3 TraesCS3B01G224600 chr5D 382379609 382380416 807 False 782.00 782 84.3710 4769 5605 1 chr5D.!!$F1 836

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
822 830 0.395312 CGGTTCTGTAACACAGGGGT 59.605 55.000 6.48 0.0 45.94 4.95 F
1061 1077 0.179034 AAGATCCAATCGCCAGCTCC 60.179 55.000 0.00 0.0 0.00 4.70 F
1906 1929 1.153920 CGCCCATTGTTTAACCGGC 60.154 57.895 0.00 0.0 32.53 6.13 F
2762 2798 2.451490 TCTTTGCTTGTGGGTTTGTCA 58.549 42.857 0.00 0.0 0.00 3.58 F
3672 3709 4.365514 TGGTGCATCTTAGGTTCTTGAA 57.634 40.909 0.00 0.0 0.00 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2114 2137 3.937079 CAGCATCTGATGAGCAGTAAACA 59.063 43.478 21.30 0.0 45.14 2.83 R
2116 2139 4.186926 GTCAGCATCTGATGAGCAGTAAA 58.813 43.478 21.30 0.0 42.73 2.01 R
3363 3400 1.759445 TGCCACCAAAAAGCTAAGCAA 59.241 42.857 0.00 0.0 0.00 3.91 R
3912 3950 2.174210 AGATGGATTGGCACATGCTAGT 59.826 45.455 3.48 0.0 39.30 2.57 R
5482 5532 0.391130 TGATGCTGGCTACAACGTCC 60.391 55.000 0.00 0.0 29.59 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 119 6.594937 ACATTTTTCAAACACTTGCTCAACAT 59.405 30.769 0.00 0.00 32.14 2.71
115 120 7.119553 ACATTTTTCAAACACTTGCTCAACATT 59.880 29.630 0.00 0.00 32.14 2.71
116 121 7.432350 TTTTTCAAACACTTGCTCAACATTT 57.568 28.000 0.00 0.00 32.14 2.32
117 122 7.432350 TTTTCAAACACTTGCTCAACATTTT 57.568 28.000 0.00 0.00 32.14 1.82
118 123 7.432350 TTTCAAACACTTGCTCAACATTTTT 57.568 28.000 0.00 0.00 32.14 1.94
119 124 6.645700 TCAAACACTTGCTCAACATTTTTC 57.354 33.333 0.00 0.00 32.14 2.29
120 125 6.162079 TCAAACACTTGCTCAACATTTTTCA 58.838 32.000 0.00 0.00 32.14 2.69
121 126 6.648310 TCAAACACTTGCTCAACATTTTTCAA 59.352 30.769 0.00 0.00 32.14 2.69
122 127 7.172190 TCAAACACTTGCTCAACATTTTTCAAA 59.828 29.630 0.00 0.00 32.14 2.69
123 128 6.407475 ACACTTGCTCAACATTTTTCAAAC 57.593 33.333 0.00 0.00 0.00 2.93
124 129 5.931146 ACACTTGCTCAACATTTTTCAAACA 59.069 32.000 0.00 0.00 0.00 2.83
125 130 6.128580 ACACTTGCTCAACATTTTTCAAACAC 60.129 34.615 0.00 0.00 0.00 3.32
126 131 6.091169 CACTTGCTCAACATTTTTCAAACACT 59.909 34.615 0.00 0.00 0.00 3.55
127 132 6.650390 ACTTGCTCAACATTTTTCAAACACTT 59.350 30.769 0.00 0.00 0.00 3.16
128 133 6.406093 TGCTCAACATTTTTCAAACACTTG 57.594 33.333 0.00 0.00 0.00 3.16
129 134 5.163874 TGCTCAACATTTTTCAAACACTTGC 60.164 36.000 0.00 0.00 32.14 4.01
130 135 5.063817 GCTCAACATTTTTCAAACACTTGCT 59.936 36.000 0.00 0.00 32.14 3.91
131 136 6.645700 TCAACATTTTTCAAACACTTGCTC 57.354 33.333 0.00 0.00 32.14 4.26
132 137 6.162079 TCAACATTTTTCAAACACTTGCTCA 58.838 32.000 0.00 0.00 32.14 4.26
133 138 6.648310 TCAACATTTTTCAAACACTTGCTCAA 59.352 30.769 0.00 0.00 32.14 3.02
134 139 6.407475 ACATTTTTCAAACACTTGCTCAAC 57.593 33.333 0.00 0.00 32.14 3.18
135 140 5.931146 ACATTTTTCAAACACTTGCTCAACA 59.069 32.000 0.00 0.00 32.14 3.33
136 141 6.594937 ACATTTTTCAAACACTTGCTCAACAT 59.405 30.769 0.00 0.00 32.14 2.71
137 142 7.119553 ACATTTTTCAAACACTTGCTCAACATT 59.880 29.630 0.00 0.00 32.14 2.71
138 143 7.432350 TTTTTCAAACACTTGCTCAACATTT 57.568 28.000 0.00 0.00 32.14 2.32
139 144 7.432350 TTTTCAAACACTTGCTCAACATTTT 57.568 28.000 0.00 0.00 32.14 1.82
209 214 1.480789 GACTCTCTCCCCTCTCCAAC 58.519 60.000 0.00 0.00 0.00 3.77
261 266 4.578516 TCAAATTTGGAGAGTCGCTGAAAA 59.421 37.500 17.90 0.00 0.00 2.29
272 277 2.863153 CTGAAAAGGCACTCCGCG 59.137 61.111 0.00 0.00 43.84 6.46
274 279 4.445545 GAAAAGGCACTCCGCGCG 62.446 66.667 25.67 25.67 43.84 6.86
315 320 1.152546 GGAGGGTTGCCAAACAGGT 60.153 57.895 0.00 0.00 40.61 4.00
331 336 8.528643 GCCAAACAGGTCCTAAGTTTAATATTT 58.471 33.333 6.95 0.00 40.61 1.40
481 486 7.713764 AATATTTTTGGAACACTTGCTCAAC 57.286 32.000 0.00 0.00 39.29 3.18
483 488 4.527509 TTTTGGAACACTTGCTCAACAA 57.472 36.364 0.00 0.00 39.29 2.83
487 492 5.083533 TGGAACACTTGCTCAACAATTTT 57.916 34.783 0.00 0.00 37.72 1.82
493 498 9.986833 GAACACTTGCTCAACAATTTTAAAAAT 57.013 25.926 4.44 0.00 37.72 1.82
561 566 5.233476 TCCACTCATTTCGCGTTGTATATTC 59.767 40.000 5.77 0.00 0.00 1.75
593 598 7.088589 ACATGAGAACCAATTTTCCTATTCG 57.911 36.000 0.00 0.00 0.00 3.34
804 812 1.019278 CGGTCCAGTTGACATTCCCG 61.019 60.000 0.00 0.00 46.38 5.14
805 813 0.676782 GGTCCAGTTGACATTCCCGG 60.677 60.000 0.00 0.00 46.38 5.73
808 816 1.165270 CCAGTTGACATTCCCGGTTC 58.835 55.000 0.00 0.00 0.00 3.62
822 830 0.395312 CGGTTCTGTAACACAGGGGT 59.605 55.000 6.48 0.00 45.94 4.95
882 890 0.749454 GCATCTGTTCCCGCCATTCT 60.749 55.000 0.00 0.00 0.00 2.40
978 994 1.475034 CCTCGTCTCTCTCCCTCTCTG 60.475 61.905 0.00 0.00 0.00 3.35
1061 1077 0.179034 AAGATCCAATCGCCAGCTCC 60.179 55.000 0.00 0.00 0.00 4.70
1622 1638 2.185350 CACCGCATCCTCGAGCTT 59.815 61.111 6.99 0.00 0.00 3.74
1906 1929 1.153920 CGCCCATTGTTTAACCGGC 60.154 57.895 0.00 0.00 32.53 6.13
2098 2121 5.970140 CACAATGCTGATTTGTGTTCAAA 57.030 34.783 12.33 0.00 45.60 2.69
2116 2139 9.824534 GTGTTCAAATTTTTCTTGTGATTTTGT 57.175 25.926 0.00 0.00 0.00 2.83
2123 2146 9.986833 AATTTTTCTTGTGATTTTGTTTACTGC 57.013 25.926 0.00 0.00 0.00 4.40
2144 2167 6.105397 TGCTCATCAGATGCTGACATATTA 57.895 37.500 5.41 0.00 43.63 0.98
2152 2175 9.955102 ATCAGATGCTGACATATTATTGTGTAT 57.045 29.630 0.00 0.00 43.63 2.29
2246 2281 7.065085 TCAGCTAATTTCCATTTTCTCTCGAAG 59.935 37.037 0.00 0.00 0.00 3.79
2295 2331 4.263331 CCTGCCCTAACCTTTTCAGAGTTA 60.263 45.833 0.00 0.00 0.00 2.24
2493 2529 4.400884 CCGATGCAGGTAGCTATATTCTCT 59.599 45.833 0.00 0.00 45.94 3.10
2762 2798 2.451490 TCTTTGCTTGTGGGTTTGTCA 58.549 42.857 0.00 0.00 0.00 3.58
2780 2816 5.843673 TGTCAGGAAGTGTTAATTTTGCA 57.156 34.783 0.00 0.00 0.00 4.08
2907 2943 9.354673 AGATTGGGTGTTATCCTATTTGTTATG 57.645 33.333 0.00 0.00 0.00 1.90
2947 2983 5.982516 TGAAAACGCTTTAAATTGTGCTGAT 59.017 32.000 0.00 0.00 0.00 2.90
2948 2984 5.827568 AAACGCTTTAAATTGTGCTGATG 57.172 34.783 0.00 0.00 0.00 3.07
3140 3177 8.748412 TCCTTGTATATTTTGGATTGGACTTTG 58.252 33.333 0.00 0.00 0.00 2.77
3151 3188 5.010922 TGGATTGGACTTTGTGGAAATCTTG 59.989 40.000 0.00 0.00 0.00 3.02
3230 3267 8.427902 AGTTGCCTGACATCTATGATAGATTA 57.572 34.615 12.11 2.23 42.70 1.75
3672 3709 4.365514 TGGTGCATCTTAGGTTCTTGAA 57.634 40.909 0.00 0.00 0.00 2.69
3912 3950 6.544928 TCTTTGAATGCTAGGACATCTGTA 57.455 37.500 0.00 0.00 0.00 2.74
3924 3962 3.126831 GACATCTGTACTAGCATGTGCC 58.873 50.000 0.57 0.00 43.38 5.01
4043 4081 5.105752 TGCAATGTAAAGTGGACAAACAAC 58.894 37.500 0.00 0.00 0.00 3.32
4155 4193 2.842496 TCTGATCTTGGACAAGGCAGAT 59.158 45.455 22.53 8.48 41.08 2.90
4275 4313 1.128692 GCTCCGTTTGACGAAGATTGG 59.871 52.381 1.51 0.00 46.05 3.16
4278 4316 3.581755 TCCGTTTGACGAAGATTGGTAG 58.418 45.455 1.51 0.00 46.05 3.18
4522 4560 4.362677 TCCTGGTAGCAGAAAGAAGGTAT 58.637 43.478 23.31 0.00 0.00 2.73
4554 4592 5.857471 ATTGCCTTGCTCATATGCTTTTA 57.143 34.783 0.00 0.00 0.00 1.52
4555 4593 4.906065 TGCCTTGCTCATATGCTTTTAG 57.094 40.909 0.00 0.00 0.00 1.85
4859 4898 2.501723 AGGTTGGAGTGCGAGATGTAAT 59.498 45.455 0.00 0.00 0.00 1.89
4989 5028 9.851686 TTTCACTAATTTGCAGTCCTGATATAT 57.148 29.630 0.00 0.00 0.00 0.86
4990 5029 8.837788 TCACTAATTTGCAGTCCTGATATATG 57.162 34.615 0.00 0.00 0.00 1.78
5142 5181 4.372999 GCAGCTTGGAGGGCCCTT 62.373 66.667 29.39 10.08 35.38 3.95
5235 5274 2.196595 CCCCTTGTCCTGATCCAAGTA 58.803 52.381 8.16 0.00 37.05 2.24
5338 5377 6.538742 TGACAAGTCAAGTTTCCTTTCTACTG 59.461 38.462 0.00 0.00 36.53 2.74
5365 5404 5.072055 TGATTTGGTGGCCTGACATATATG 58.928 41.667 11.29 11.29 0.00 1.78
5439 5478 1.229145 ACTGCAGAGTGAGGGCTCT 60.229 57.895 23.35 0.00 45.87 4.09
5482 5532 1.280133 TCAAGAGGACCTGATGGCAAG 59.720 52.381 0.00 0.00 36.63 4.01
5532 5583 1.138568 CATGCTCCCCTCTCCAAGAT 58.861 55.000 0.00 0.00 0.00 2.40
5637 5688 5.389859 TGCTCTTGGGATTGTTATGTTTG 57.610 39.130 0.00 0.00 0.00 2.93
5682 5733 3.008157 TGTTTGCCAGCAATGGATCAATT 59.992 39.130 5.80 0.00 35.70 2.32
5715 5766 4.379813 CCATTGAGTCTGTGGTGCATAAAC 60.380 45.833 0.00 0.00 0.00 2.01
5750 5801 1.222936 CTGGTGGGATCCTGCTCAC 59.777 63.158 12.58 10.87 0.00 3.51
5839 5892 2.032620 ACAAAGTCGACCTGTCAGAGT 58.967 47.619 13.01 0.00 0.00 3.24
5931 6009 3.695830 TTGGACCCTCTTGTACATGTC 57.304 47.619 0.00 5.37 0.00 3.06
5958 6036 2.882742 CAAAGTAGCGTTGGAGAAGC 57.117 50.000 0.00 0.00 0.00 3.86
5965 6043 1.864862 CGTTGGAGAAGCAGTGCAG 59.135 57.895 19.20 0.00 0.00 4.41
5972 6050 0.610687 AGAAGCAGTGCAGGTACTCC 59.389 55.000 19.20 0.00 34.60 3.85
5982 6060 4.408921 AGTGCAGGTACTCCTATATGCAAA 59.591 41.667 0.00 0.00 43.07 3.68
5983 6061 5.072329 AGTGCAGGTACTCCTATATGCAAAT 59.928 40.000 0.00 0.00 43.07 2.32
5984 6062 6.270000 AGTGCAGGTACTCCTATATGCAAATA 59.730 38.462 0.00 0.00 43.07 1.40
5985 6063 6.591834 GTGCAGGTACTCCTATATGCAAATAG 59.408 42.308 0.00 0.00 43.07 1.73
5986 6064 6.496911 TGCAGGTACTCCTATATGCAAATAGA 59.503 38.462 0.00 0.00 43.07 1.98
5987 6065 7.038659 GCAGGTACTCCTATATGCAAATAGAG 58.961 42.308 0.00 0.00 43.07 2.43
5988 6066 7.038659 CAGGTACTCCTATATGCAAATAGAGC 58.961 42.308 0.00 0.00 43.07 4.09
5989 6067 6.726299 AGGTACTCCTATATGCAAATAGAGCA 59.274 38.462 0.00 0.00 43.79 4.26
5990 6068 7.235606 AGGTACTCCTATATGCAAATAGAGCAA 59.764 37.037 0.00 0.00 43.27 3.91
5991 6069 7.547370 GGTACTCCTATATGCAAATAGAGCAAG 59.453 40.741 0.00 0.00 46.27 4.01
5992 6070 6.471146 ACTCCTATATGCAAATAGAGCAAGG 58.529 40.000 0.00 0.00 46.27 3.61
6043 6133 6.708949 AGTAATACTTTCTTGCGGAAAACTGA 59.291 34.615 6.22 0.00 42.52 3.41
6072 6162 1.228124 CCAAACCAGGAAGCCGTGA 60.228 57.895 0.00 0.00 0.00 4.35
6073 6163 0.609131 CCAAACCAGGAAGCCGTGAT 60.609 55.000 0.00 0.00 0.00 3.06
6074 6164 1.339631 CCAAACCAGGAAGCCGTGATA 60.340 52.381 0.00 0.00 0.00 2.15
6075 6165 1.737793 CAAACCAGGAAGCCGTGATAC 59.262 52.381 0.00 0.00 0.00 2.24
6076 6166 0.108329 AACCAGGAAGCCGTGATACG 60.108 55.000 0.00 0.00 42.11 3.06
6077 6167 1.255667 ACCAGGAAGCCGTGATACGT 61.256 55.000 0.00 0.00 40.58 3.57
6078 6168 0.108329 CCAGGAAGCCGTGATACGTT 60.108 55.000 0.00 0.00 40.58 3.99
6079 6169 0.999406 CAGGAAGCCGTGATACGTTG 59.001 55.000 0.00 0.00 40.58 4.10
6080 6170 0.892755 AGGAAGCCGTGATACGTTGA 59.107 50.000 0.00 0.00 40.58 3.18
6081 6171 1.135083 AGGAAGCCGTGATACGTTGAG 60.135 52.381 0.00 0.00 40.58 3.02
6082 6172 0.645868 GAAGCCGTGATACGTTGAGC 59.354 55.000 0.00 0.00 40.58 4.26
6151 6241 7.275560 ACAAGAACAATACACAAAAGCTTTGAC 59.724 33.333 13.54 0.00 0.00 3.18
6152 6242 6.862209 AGAACAATACACAAAAGCTTTGACA 58.138 32.000 13.54 0.00 0.00 3.58
6153 6243 7.319646 AGAACAATACACAAAAGCTTTGACAA 58.680 30.769 13.54 0.00 0.00 3.18
6154 6244 7.816995 AGAACAATACACAAAAGCTTTGACAAA 59.183 29.630 13.54 0.00 0.00 2.83
6155 6245 7.897575 ACAATACACAAAAGCTTTGACAAAA 57.102 28.000 13.54 0.00 0.00 2.44
6156 6246 7.738345 ACAATACACAAAAGCTTTGACAAAAC 58.262 30.769 13.54 0.00 0.00 2.43
6157 6247 4.901866 ACACAAAAGCTTTGACAAAACG 57.098 36.364 13.54 0.00 0.00 3.60
6158 6248 4.551388 ACACAAAAGCTTTGACAAAACGA 58.449 34.783 13.54 0.00 0.00 3.85
6159 6249 4.621034 ACACAAAAGCTTTGACAAAACGAG 59.379 37.500 13.54 0.00 0.00 4.18
6160 6250 4.621034 CACAAAAGCTTTGACAAAACGAGT 59.379 37.500 13.54 0.00 0.00 4.18
6161 6251 4.621034 ACAAAAGCTTTGACAAAACGAGTG 59.379 37.500 13.54 5.05 0.00 3.51
6162 6252 4.695217 AAAGCTTTGACAAAACGAGTGA 57.305 36.364 11.80 0.00 0.00 3.41
6163 6253 3.675467 AGCTTTGACAAAACGAGTGAC 57.325 42.857 1.62 0.00 0.00 3.67
6164 6254 3.006940 AGCTTTGACAAAACGAGTGACA 58.993 40.909 1.62 0.00 0.00 3.58
6165 6255 3.627577 AGCTTTGACAAAACGAGTGACAT 59.372 39.130 1.62 0.00 0.00 3.06
6166 6256 4.814234 AGCTTTGACAAAACGAGTGACATA 59.186 37.500 1.62 0.00 0.00 2.29
6167 6257 5.295787 AGCTTTGACAAAACGAGTGACATAA 59.704 36.000 1.62 0.00 0.00 1.90
6168 6258 5.968848 GCTTTGACAAAACGAGTGACATAAA 59.031 36.000 1.62 0.00 0.00 1.40
6169 6259 6.075572 GCTTTGACAAAACGAGTGACATAAAC 60.076 38.462 1.62 0.00 0.00 2.01
6170 6260 6.424176 TTGACAAAACGAGTGACATAAACA 57.576 33.333 0.00 0.00 0.00 2.83
6171 6261 5.802064 TGACAAAACGAGTGACATAAACAC 58.198 37.500 0.00 0.00 38.38 3.32
6172 6262 5.351740 TGACAAAACGAGTGACATAAACACA 59.648 36.000 0.00 0.00 40.25 3.72
6173 6263 6.037720 TGACAAAACGAGTGACATAAACACAT 59.962 34.615 0.00 0.00 40.25 3.21
6174 6264 6.427150 ACAAAACGAGTGACATAAACACATC 58.573 36.000 0.00 0.00 40.25 3.06
6175 6265 4.903638 AACGAGTGACATAAACACATCG 57.096 40.909 0.85 0.85 40.65 3.84
6176 6266 4.168922 ACGAGTGACATAAACACATCGA 57.831 40.909 18.29 0.00 39.10 3.59
6177 6267 3.918591 ACGAGTGACATAAACACATCGAC 59.081 43.478 18.29 0.00 39.10 4.20
6178 6268 4.166523 CGAGTGACATAAACACATCGACT 58.833 43.478 0.00 0.00 39.10 4.18
6179 6269 4.030641 CGAGTGACATAAACACATCGACTG 59.969 45.833 0.00 0.00 39.10 3.51
6180 6270 5.134202 AGTGACATAAACACATCGACTGA 57.866 39.130 0.00 0.00 40.25 3.41
6181 6271 4.923871 AGTGACATAAACACATCGACTGAC 59.076 41.667 0.00 0.00 40.25 3.51
6182 6272 4.684242 GTGACATAAACACATCGACTGACA 59.316 41.667 0.00 0.00 38.05 3.58
6183 6273 4.923281 TGACATAAACACATCGACTGACAG 59.077 41.667 0.00 0.00 0.00 3.51
6184 6274 5.134202 ACATAAACACATCGACTGACAGA 57.866 39.130 10.08 0.00 0.00 3.41
6185 6275 5.724328 ACATAAACACATCGACTGACAGAT 58.276 37.500 10.08 0.00 0.00 2.90
6186 6276 5.807520 ACATAAACACATCGACTGACAGATC 59.192 40.000 10.08 2.36 0.00 2.75
6187 6277 2.551355 ACACATCGACTGACAGATCG 57.449 50.000 10.08 14.17 39.72 3.69
6188 6278 1.195347 CACATCGACTGACAGATCGC 58.805 55.000 10.08 0.00 38.24 4.58
6189 6279 1.098869 ACATCGACTGACAGATCGCT 58.901 50.000 10.08 3.93 38.24 4.93
6191 6281 0.248825 ATCGACTGACAGATCGCTGC 60.249 55.000 10.08 0.00 46.26 5.25
6192 6282 1.138459 CGACTGACAGATCGCTGCT 59.862 57.895 10.08 0.00 46.26 4.24
6193 6283 0.457509 CGACTGACAGATCGCTGCTT 60.458 55.000 10.08 0.00 46.26 3.91
6194 6284 0.997932 GACTGACAGATCGCTGCTTG 59.002 55.000 10.08 0.00 46.26 4.01
6195 6285 0.390866 ACTGACAGATCGCTGCTTGG 60.391 55.000 10.08 0.00 46.26 3.61
6196 6286 1.703438 CTGACAGATCGCTGCTTGGC 61.703 60.000 0.00 0.00 46.26 4.52
6218 6308 4.935495 CGGCCGGCATGCAGGTAT 62.935 66.667 32.99 0.00 33.76 2.73
6263 6353 1.299541 CTTCAACGACTTGTGGCAGT 58.700 50.000 0.00 0.00 0.00 4.40
6281 6371 4.562757 GGCAGTGATAGCCCGTATAAATCA 60.563 45.833 0.00 0.00 46.50 2.57
6282 6372 5.178797 GCAGTGATAGCCCGTATAAATCAT 58.821 41.667 0.00 0.00 0.00 2.45
6283 6373 5.643777 GCAGTGATAGCCCGTATAAATCATT 59.356 40.000 0.00 0.00 0.00 2.57
6284 6374 6.402550 GCAGTGATAGCCCGTATAAATCATTG 60.403 42.308 0.00 0.00 37.36 2.82
6285 6375 6.873605 CAGTGATAGCCCGTATAAATCATTGA 59.126 38.462 0.00 0.00 36.79 2.57
6286 6376 7.063898 CAGTGATAGCCCGTATAAATCATTGAG 59.936 40.741 0.00 0.00 36.79 3.02
6287 6377 6.874134 GTGATAGCCCGTATAAATCATTGAGT 59.126 38.462 0.00 0.00 0.00 3.41
6288 6378 7.387948 GTGATAGCCCGTATAAATCATTGAGTT 59.612 37.037 4.61 4.61 0.00 3.01
6289 6379 7.936847 TGATAGCCCGTATAAATCATTGAGTTT 59.063 33.333 4.51 2.72 0.00 2.66
6290 6380 8.691661 ATAGCCCGTATAAATCATTGAGTTTT 57.308 30.769 4.51 0.01 0.00 2.43
6291 6381 7.404671 AGCCCGTATAAATCATTGAGTTTTT 57.595 32.000 4.51 0.00 0.00 1.94
6328 6725 6.998074 TGGGTATAAATTCATGCCTTCTACAG 59.002 38.462 0.00 0.00 31.80 2.74
6352 6749 0.981183 AATACCACCGAGCCAACTCA 59.019 50.000 0.00 0.00 43.66 3.41
6364 6761 4.265073 GAGCCAACTCACTACCATTCAAT 58.735 43.478 0.00 0.00 42.93 2.57
6371 6768 7.012704 CCAACTCACTACCATTCAATTATGGAG 59.987 40.741 13.21 8.84 46.63 3.86
6379 6776 4.353788 CCATTCAATTATGGAGGTCCCCTA 59.646 45.833 1.46 0.00 46.63 3.53
6380 6777 5.316987 CATTCAATTATGGAGGTCCCCTAC 58.683 45.833 0.00 0.00 34.37 3.18
6381 6778 8.670923 CCATTCAATTATGGAGGTCCCCTACC 62.671 50.000 1.46 0.00 46.63 3.18
6441 6841 4.336280 AGACTAATTTGGAACTTGAGGGC 58.664 43.478 0.00 0.00 0.00 5.19
6446 6846 2.978156 TTGGAACTTGAGGGCATCTT 57.022 45.000 0.00 0.00 0.00 2.40
6451 6851 2.957402 ACTTGAGGGCATCTTCAACA 57.043 45.000 0.00 0.00 0.00 3.33
6453 6853 2.158623 ACTTGAGGGCATCTTCAACACA 60.159 45.455 0.00 0.00 0.00 3.72
6460 6860 2.079925 GCATCTTCAACACAGACCCTC 58.920 52.381 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 103 7.041508 TGTTTGAAAAATGTTGAGCAAGTGTTT 60.042 29.630 0.00 0.00 0.00 2.83
114 119 7.432350 AAATGTTGAGCAAGTGTTTGAAAAA 57.568 28.000 0.00 0.00 36.36 1.94
115 120 7.432350 AAAATGTTGAGCAAGTGTTTGAAAA 57.568 28.000 0.00 0.00 36.36 2.29
116 121 7.432350 AAAAATGTTGAGCAAGTGTTTGAAA 57.568 28.000 0.00 0.00 36.36 2.69
229 234 7.023575 CGACTCTCCAAATTTGAACTAAATGG 58.976 38.462 19.86 0.00 38.93 3.16
453 458 9.823647 TGAGCAAGTGTTCCAAAAATATTAAAA 57.176 25.926 0.00 0.00 0.00 1.52
458 463 6.815089 TGTTGAGCAAGTGTTCCAAAAATAT 58.185 32.000 0.00 0.00 0.00 1.28
466 471 7.532682 TTTAAAATTGTTGAGCAAGTGTTCC 57.467 32.000 0.00 0.00 40.86 3.62
539 544 6.274001 AGAATATACAACGCGAAATGAGTG 57.726 37.500 15.93 1.14 0.00 3.51
561 566 9.573133 GGAAAATTGGTTCTCATGTATACAAAG 57.427 33.333 10.14 10.56 0.00 2.77
578 583 8.542132 CATGTTTAATGCGAATAGGAAAATTGG 58.458 33.333 0.00 0.00 0.00 3.16
716 721 2.355010 GCCTGAGGCCATATTCTTGT 57.645 50.000 13.77 0.00 44.06 3.16
731 736 3.052082 CCGCTGACAACAGGCCTG 61.052 66.667 31.60 31.60 43.62 4.85
752 757 3.015145 ACAGTAGGCCGGCCCATT 61.015 61.111 41.72 26.37 36.58 3.16
764 769 1.552578 TAAAGGCGAGCTCCACAGTA 58.447 50.000 8.47 0.00 0.00 2.74
766 771 1.576356 GATAAAGGCGAGCTCCACAG 58.424 55.000 8.47 0.00 0.00 3.66
808 816 3.855159 GGCTACCCCTGTGTTACAG 57.145 57.895 2.05 2.05 45.53 2.74
822 830 0.257616 GGGTGGCAGTTTATGGGCTA 59.742 55.000 0.00 0.00 0.00 3.93
1016 1032 0.034896 GGGAGAGTTGCTGTTTCCGA 59.965 55.000 0.00 0.00 0.00 4.55
1061 1077 4.806247 AGAAATAACGCGATCTTGAGAAGG 59.194 41.667 15.93 0.00 0.00 3.46
1906 1929 4.041049 TGCAACGAAAACAAATAGCACAG 58.959 39.130 0.00 0.00 0.00 3.66
2098 2121 9.382275 AGCAGTAAACAAAATCACAAGAAAAAT 57.618 25.926 0.00 0.00 0.00 1.82
2114 2137 3.937079 CAGCATCTGATGAGCAGTAAACA 59.063 43.478 21.30 0.00 45.14 2.83
2116 2139 4.186926 GTCAGCATCTGATGAGCAGTAAA 58.813 43.478 21.30 0.00 42.73 2.01
2123 2146 8.443937 CACAATAATATGTCAGCATCTGATGAG 58.556 37.037 21.30 12.18 42.73 2.90
2246 2281 7.201617 GGACATGAGGTGCTATTTTACAAGTAC 60.202 40.741 0.00 0.00 34.56 2.73
2295 2331 9.856162 TTTGATTTGTAACTAGTACTTTCCCTT 57.144 29.630 0.00 0.00 33.46 3.95
2493 2529 7.771361 TGGTAACACAACAAAAGAGACTGAATA 59.229 33.333 0.00 0.00 46.17 1.75
2762 2798 6.544038 GCAAATGCAAAATTAACACTTCCT 57.456 33.333 0.00 0.00 41.59 3.36
2780 2816 5.359009 CCAGTGATCTATCAAAGGTGCAAAT 59.641 40.000 0.00 0.00 38.75 2.32
2907 2943 7.522374 AGCGTTTTCAGAAGAGAAAATCATAC 58.478 34.615 5.32 0.00 45.86 2.39
3140 3177 9.660180 AGAAGAGAGTATTAACAAGATTTCCAC 57.340 33.333 0.00 0.00 0.00 4.02
3151 3188 8.536407 GCGATCAGAAAAGAAGAGAGTATTAAC 58.464 37.037 0.00 0.00 0.00 2.01
3230 3267 3.327757 TGTTTGGAGCCAGTGATCTAGTT 59.672 43.478 0.00 0.00 0.00 2.24
3363 3400 1.759445 TGCCACCAAAAAGCTAAGCAA 59.241 42.857 0.00 0.00 0.00 3.91
3912 3950 2.174210 AGATGGATTGGCACATGCTAGT 59.826 45.455 3.48 0.00 39.30 2.57
3924 3962 6.421377 TTGTAACGTGATTCAGATGGATTG 57.579 37.500 0.00 0.00 0.00 2.67
4155 4193 3.325870 CAGGCGTCTATCAGTTTGTTCA 58.674 45.455 0.00 0.00 0.00 3.18
4522 4560 4.905429 TGAGCAAGGCAATACAACTAGAA 58.095 39.130 0.00 0.00 0.00 2.10
4806 4845 4.202253 ACAAGGTCAAAAATTTCAGCCTCC 60.202 41.667 0.00 0.00 0.00 4.30
5142 5181 1.408969 TACCTCAGCCATACGCATCA 58.591 50.000 0.00 0.00 41.38 3.07
5235 5274 1.271325 TGTGCGGTGATCAGGAACAAT 60.271 47.619 5.25 0.00 0.00 2.71
5269 5308 2.092538 CCATGGAGCTCTGTTTCCTCAT 60.093 50.000 14.64 2.79 34.48 2.90
5365 5404 5.972107 AATCCAGGAATGTATTAGCATGC 57.028 39.130 10.51 10.51 0.00 4.06
5439 5478 2.631062 ACTGTCTCCGTGGACAAATACA 59.369 45.455 8.61 0.00 44.24 2.29
5482 5532 0.391130 TGATGCTGGCTACAACGTCC 60.391 55.000 0.00 0.00 29.59 4.79
5532 5583 8.588472 TCTACAAAGAGATCAGATCTTCAACAA 58.412 33.333 14.46 0.00 40.38 2.83
5637 5688 8.200364 ACACAAATAAAAATATGCCTTCATGC 57.800 30.769 0.00 0.00 34.22 4.06
5682 5733 3.452264 ACAGACTCAATGGTAGCAGCATA 59.548 43.478 0.00 0.00 34.88 3.14
5715 5766 3.316308 CACCAGACAAGAAGAAAAGTGGG 59.684 47.826 0.00 0.00 0.00 4.61
5719 5770 3.820557 TCCCACCAGACAAGAAGAAAAG 58.179 45.455 0.00 0.00 0.00 2.27
5750 5801 0.798159 TCGTGCTGTATGCTTGCAAG 59.202 50.000 22.44 22.44 43.37 4.01
5839 5892 0.834612 ACTTGACCGACCACTCCAAA 59.165 50.000 0.00 0.00 0.00 3.28
5931 6009 2.484264 CCAACGCTACTTTGGAAGGAAG 59.516 50.000 0.00 0.00 45.69 3.46
5965 6043 6.936279 TGCTCTATTTGCATATAGGAGTACC 58.064 40.000 19.97 7.84 35.31 3.34
5972 6050 8.557592 TTGATCCTTGCTCTATTTGCATATAG 57.442 34.615 15.72 15.72 40.34 1.31
5982 6060 5.684552 GCAACTCTCTTGATCCTTGCTCTAT 60.685 44.000 0.00 0.00 32.92 1.98
5983 6061 4.382470 GCAACTCTCTTGATCCTTGCTCTA 60.382 45.833 0.00 0.00 32.92 2.43
5984 6062 3.619487 GCAACTCTCTTGATCCTTGCTCT 60.619 47.826 0.00 0.00 32.92 4.09
5985 6063 2.677337 GCAACTCTCTTGATCCTTGCTC 59.323 50.000 0.00 0.00 32.92 4.26
5986 6064 2.305343 AGCAACTCTCTTGATCCTTGCT 59.695 45.455 0.00 0.00 39.54 3.91
5987 6065 2.677337 GAGCAACTCTCTTGATCCTTGC 59.323 50.000 0.00 0.00 38.78 4.01
5988 6066 3.933955 CTGAGCAACTCTCTTGATCCTTG 59.066 47.826 0.00 0.00 42.38 3.61
5989 6067 3.837146 TCTGAGCAACTCTCTTGATCCTT 59.163 43.478 0.00 0.00 42.38 3.36
5990 6068 3.439154 TCTGAGCAACTCTCTTGATCCT 58.561 45.455 0.00 0.00 42.38 3.24
5991 6069 3.883830 TCTGAGCAACTCTCTTGATCC 57.116 47.619 0.00 0.00 42.38 3.36
5992 6070 5.008619 TGATCTGAGCAACTCTCTTGATC 57.991 43.478 0.00 14.87 43.81 2.92
6043 6133 2.176798 TCCTGGTTTGGTCACCTTTCAT 59.823 45.455 0.00 0.00 37.75 2.57
6088 6178 3.068560 CTCAACGTATCCCCGTCAAAAA 58.931 45.455 0.00 0.00 40.85 1.94
6089 6179 2.690786 CTCAACGTATCCCCGTCAAAA 58.309 47.619 0.00 0.00 40.85 2.44
6090 6180 1.673626 GCTCAACGTATCCCCGTCAAA 60.674 52.381 0.00 0.00 40.85 2.69
6091 6181 0.108520 GCTCAACGTATCCCCGTCAA 60.109 55.000 0.00 0.00 40.85 3.18
6092 6182 1.514087 GCTCAACGTATCCCCGTCA 59.486 57.895 0.00 0.00 40.85 4.35
6093 6183 1.588139 CGCTCAACGTATCCCCGTC 60.588 63.158 0.00 0.00 40.85 4.79
6094 6184 2.493030 CGCTCAACGTATCCCCGT 59.507 61.111 0.00 0.00 44.23 5.28
6151 6241 5.560005 CGATGTGTTTATGTCACTCGTTTTG 59.440 40.000 0.00 0.00 36.83 2.44
6152 6242 5.464057 TCGATGTGTTTATGTCACTCGTTTT 59.536 36.000 0.00 0.00 37.52 2.43
6153 6243 4.986034 TCGATGTGTTTATGTCACTCGTTT 59.014 37.500 0.00 0.00 37.52 3.60
6154 6244 4.384846 GTCGATGTGTTTATGTCACTCGTT 59.615 41.667 0.00 0.00 37.52 3.85
6155 6245 3.918591 GTCGATGTGTTTATGTCACTCGT 59.081 43.478 0.00 0.00 37.52 4.18
6156 6246 4.030641 CAGTCGATGTGTTTATGTCACTCG 59.969 45.833 0.00 0.00 37.56 4.18
6157 6247 5.061064 GTCAGTCGATGTGTTTATGTCACTC 59.939 44.000 0.00 0.00 36.83 3.51
6158 6248 4.923871 GTCAGTCGATGTGTTTATGTCACT 59.076 41.667 0.00 0.00 36.83 3.41
6159 6249 4.684242 TGTCAGTCGATGTGTTTATGTCAC 59.316 41.667 0.00 0.00 36.48 3.67
6160 6250 4.877282 TGTCAGTCGATGTGTTTATGTCA 58.123 39.130 0.00 0.00 0.00 3.58
6161 6251 5.161358 TCTGTCAGTCGATGTGTTTATGTC 58.839 41.667 0.00 0.00 0.00 3.06
6162 6252 5.134202 TCTGTCAGTCGATGTGTTTATGT 57.866 39.130 0.00 0.00 0.00 2.29
6163 6253 5.052106 CGATCTGTCAGTCGATGTGTTTATG 60.052 44.000 15.45 0.00 40.11 1.90
6164 6254 5.037385 CGATCTGTCAGTCGATGTGTTTAT 58.963 41.667 15.45 0.00 40.11 1.40
6165 6255 4.412207 CGATCTGTCAGTCGATGTGTTTA 58.588 43.478 15.45 0.00 40.11 2.01
6166 6256 3.245797 CGATCTGTCAGTCGATGTGTTT 58.754 45.455 15.45 0.00 40.11 2.83
6167 6257 2.868662 CGATCTGTCAGTCGATGTGTT 58.131 47.619 15.45 0.00 40.11 3.32
6168 6258 1.468224 GCGATCTGTCAGTCGATGTGT 60.468 52.381 21.36 0.00 40.11 3.72
6169 6259 1.195347 GCGATCTGTCAGTCGATGTG 58.805 55.000 21.36 0.00 40.11 3.21
6170 6260 1.098869 AGCGATCTGTCAGTCGATGT 58.901 50.000 21.36 8.16 40.11 3.06
6171 6261 1.475045 CAGCGATCTGTCAGTCGATG 58.525 55.000 20.42 20.42 45.75 3.84
6172 6262 0.248825 GCAGCGATCTGTCAGTCGAT 60.249 55.000 21.36 15.54 42.29 3.59
6173 6263 1.137614 GCAGCGATCTGTCAGTCGA 59.862 57.895 21.36 0.00 42.29 4.20
6174 6264 0.457509 AAGCAGCGATCTGTCAGTCG 60.458 55.000 15.93 15.93 42.29 4.18
6175 6265 0.997932 CAAGCAGCGATCTGTCAGTC 59.002 55.000 0.00 0.00 42.29 3.51
6176 6266 0.390866 CCAAGCAGCGATCTGTCAGT 60.391 55.000 0.00 0.00 42.29 3.41
6177 6267 1.703438 GCCAAGCAGCGATCTGTCAG 61.703 60.000 0.00 0.00 42.29 3.51
6178 6268 1.742880 GCCAAGCAGCGATCTGTCA 60.743 57.895 0.00 0.00 42.29 3.58
6179 6269 3.096791 GCCAAGCAGCGATCTGTC 58.903 61.111 0.00 0.00 42.29 3.51
6201 6291 4.935495 ATACCTGCATGCCGGCCG 62.935 66.667 26.25 21.04 0.00 6.13
6202 6292 3.289834 CATACCTGCATGCCGGCC 61.290 66.667 26.25 9.46 0.00 6.13
6212 6302 2.098298 GCGCGTGTTGCATACCTG 59.902 61.111 8.43 0.00 46.97 4.00
6213 6303 3.124921 GGCGCGTGTTGCATACCT 61.125 61.111 8.43 0.00 46.97 3.08
6214 6304 4.514569 CGGCGCGTGTTGCATACC 62.515 66.667 8.43 0.00 46.97 2.73
6215 6305 4.514569 CCGGCGCGTGTTGCATAC 62.515 66.667 8.43 0.00 46.97 2.39
6263 6353 7.004555 ACTCAATGATTTATACGGGCTATCA 57.995 36.000 0.00 0.00 0.00 2.15
6289 6379 9.952030 GAATTTATACCCATTTTGGAGGAAAAA 57.048 29.630 0.00 0.00 40.96 1.94
6290 6380 9.105844 TGAATTTATACCCATTTTGGAGGAAAA 57.894 29.630 0.00 0.00 40.96 2.29
6291 6381 8.671987 TGAATTTATACCCATTTTGGAGGAAA 57.328 30.769 0.00 0.00 40.96 3.13
6292 6382 8.703743 CATGAATTTATACCCATTTTGGAGGAA 58.296 33.333 0.00 0.00 40.96 3.36
6293 6383 7.201992 GCATGAATTTATACCCATTTTGGAGGA 60.202 37.037 0.00 0.00 40.96 3.71
6294 6384 6.930722 GCATGAATTTATACCCATTTTGGAGG 59.069 38.462 0.00 0.00 40.96 4.30
6295 6385 6.930722 GGCATGAATTTATACCCATTTTGGAG 59.069 38.462 0.00 0.00 40.96 3.86
6296 6386 6.614906 AGGCATGAATTTATACCCATTTTGGA 59.385 34.615 0.00 0.00 40.96 3.53
6297 6387 6.829849 AGGCATGAATTTATACCCATTTTGG 58.170 36.000 0.00 0.00 37.25 3.28
6298 6388 8.206189 AGAAGGCATGAATTTATACCCATTTTG 58.794 33.333 0.00 0.00 0.00 2.44
6299 6389 8.322905 AGAAGGCATGAATTTATACCCATTTT 57.677 30.769 0.00 0.00 0.00 1.82
6300 6390 7.919385 AGAAGGCATGAATTTATACCCATTT 57.081 32.000 0.00 0.00 0.00 2.32
6301 6391 8.004215 TGTAGAAGGCATGAATTTATACCCATT 58.996 33.333 0.00 0.00 0.00 3.16
6302 6392 7.526041 TGTAGAAGGCATGAATTTATACCCAT 58.474 34.615 0.00 0.00 0.00 4.00
6303 6393 6.905736 TGTAGAAGGCATGAATTTATACCCA 58.094 36.000 0.00 0.00 0.00 4.51
6328 6725 0.539986 TGGCTCGGTGGTATTCTTCC 59.460 55.000 0.00 0.00 0.00 3.46
6352 6749 5.163088 GGGACCTCCATAATTGAATGGTAGT 60.163 44.000 7.05 6.05 45.67 2.73
6387 6784 9.362151 GGGATATCCATAGTTGAATGGTAAAAA 57.638 33.333 23.27 0.00 45.67 1.94
6388 6785 7.947890 GGGGATATCCATAGTTGAATGGTAAAA 59.052 37.037 23.27 0.00 45.67 1.52
6389 6786 7.297108 AGGGGATATCCATAGTTGAATGGTAAA 59.703 37.037 23.27 0.00 45.67 2.01
6409 6809 5.796502 TCCAAATTAGTCTTTGAGGGGAT 57.203 39.130 0.00 0.00 38.17 3.85
6441 6841 3.407424 TGAGGGTCTGTGTTGAAGATG 57.593 47.619 0.00 0.00 0.00 2.90
6446 6846 2.549992 CCGATTTGAGGGTCTGTGTTGA 60.550 50.000 0.00 0.00 0.00 3.18
6451 6851 1.002087 GTGTCCGATTTGAGGGTCTGT 59.998 52.381 0.00 0.00 0.00 3.41
6453 6853 0.613777 GGTGTCCGATTTGAGGGTCT 59.386 55.000 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.