Multiple sequence alignment - TraesCS3B01G223500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G223500 chr3B 100.000 4741 0 0 1 4741 292883111 292887851 0.000000e+00 8756
1 TraesCS3B01G223500 chr3B 97.145 4484 124 4 1 4481 545705651 545710133 0.000000e+00 7568
2 TraesCS3B01G223500 chr3B 88.123 261 29 2 4482 4741 292902886 292903145 4.610000e-80 309
3 TraesCS3B01G223500 chr3B 88.235 255 29 1 4488 4741 270353152 270352898 2.140000e-78 303
4 TraesCS3B01G223500 chr5B 97.747 4483 96 4 1 4480 663247962 663243482 0.000000e+00 7714
5 TraesCS3B01G223500 chr2A 97.657 4481 105 0 1 4481 761131634 761136114 0.000000e+00 7694
6 TraesCS3B01G223500 chr2A 87.027 185 23 1 4488 4671 708576420 708576236 1.730000e-49 207
7 TraesCS3B01G223500 chr6B 97.370 4487 109 3 1 4485 522436849 522432370 0.000000e+00 7624
8 TraesCS3B01G223500 chr6B 97.153 3583 101 1 1 3583 49682119 49678538 0.000000e+00 6050
9 TraesCS3B01G223500 chr6B 95.269 465 22 0 1052 1516 29510578 29511042 0.000000e+00 737
10 TraesCS3B01G223500 chr6B 81.369 263 43 5 4482 4741 407887532 407887791 4.810000e-50 209
11 TraesCS3B01G223500 chr1B 97.235 4484 121 2 1 4481 37922659 37918176 0.000000e+00 7590
12 TraesCS3B01G223500 chr1B 92.789 1054 70 5 1 1050 31636341 31635290 0.000000e+00 1520
13 TraesCS3B01G223500 chr5A 96.225 2702 94 6 1786 4482 522675296 522672598 0.000000e+00 4418
14 TraesCS3B01G223500 chr5A 96.077 2702 98 5 1786 4481 149693846 149691147 0.000000e+00 4396
15 TraesCS3B01G223500 chr5A 98.195 277 5 0 1514 1790 149694662 149694386 7.130000e-133 484
16 TraesCS3B01G223500 chr5A 97.473 277 7 0 1514 1790 522676113 522675837 1.540000e-129 473
17 TraesCS3B01G223500 chr1A 94.972 2705 126 8 1786 4483 565926224 565928925 0.000000e+00 4233
18 TraesCS3B01G223500 chr1A 96.786 280 9 0 1511 1790 565925404 565925683 7.180000e-128 468
19 TraesCS3B01G223500 chr2B 90.390 1051 64 15 1 1050 6773481 6772467 0.000000e+00 1347
20 TraesCS3B01G223500 chr2B 90.295 1051 66 14 1 1050 6908914 6907899 0.000000e+00 1343
21 TraesCS3B01G223500 chr7B 94.839 465 24 0 1052 1516 699808841 699808377 0.000000e+00 726
22 TraesCS3B01G223500 chr7B 93.978 465 28 0 1052 1516 646000990 646000526 0.000000e+00 704
23 TraesCS3B01G223500 chr2D 86.667 255 33 1 4488 4741 239656828 239656574 1.000000e-71 281
24 TraesCS3B01G223500 chr5D 82.824 262 42 3 4482 4741 405391909 405392169 1.030000e-56 231
25 TraesCS3B01G223500 chr7D 87.568 185 22 1 4488 4671 304731844 304731660 3.720000e-51 213
26 TraesCS3B01G223500 chr7D 87.027 185 23 1 4488 4671 295629442 295629258 1.730000e-49 207
27 TraesCS3B01G223500 chr7A 86.316 190 25 1 4482 4671 376403505 376403693 6.220000e-49 206


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G223500 chr3B 292883111 292887851 4740 False 8756.0 8756 100.000 1 4741 1 chr3B.!!$F1 4740
1 TraesCS3B01G223500 chr3B 545705651 545710133 4482 False 7568.0 7568 97.145 1 4481 1 chr3B.!!$F3 4480
2 TraesCS3B01G223500 chr5B 663243482 663247962 4480 True 7714.0 7714 97.747 1 4480 1 chr5B.!!$R1 4479
3 TraesCS3B01G223500 chr2A 761131634 761136114 4480 False 7694.0 7694 97.657 1 4481 1 chr2A.!!$F1 4480
4 TraesCS3B01G223500 chr6B 522432370 522436849 4479 True 7624.0 7624 97.370 1 4485 1 chr6B.!!$R2 4484
5 TraesCS3B01G223500 chr6B 49678538 49682119 3581 True 6050.0 6050 97.153 1 3583 1 chr6B.!!$R1 3582
6 TraesCS3B01G223500 chr1B 37918176 37922659 4483 True 7590.0 7590 97.235 1 4481 1 chr1B.!!$R2 4480
7 TraesCS3B01G223500 chr1B 31635290 31636341 1051 True 1520.0 1520 92.789 1 1050 1 chr1B.!!$R1 1049
8 TraesCS3B01G223500 chr5A 522672598 522676113 3515 True 2445.5 4418 96.849 1514 4482 2 chr5A.!!$R2 2968
9 TraesCS3B01G223500 chr5A 149691147 149694662 3515 True 2440.0 4396 97.136 1514 4481 2 chr5A.!!$R1 2967
10 TraesCS3B01G223500 chr1A 565925404 565928925 3521 False 2350.5 4233 95.879 1511 4483 2 chr1A.!!$F1 2972
11 TraesCS3B01G223500 chr2B 6772467 6773481 1014 True 1347.0 1347 90.390 1 1050 1 chr2B.!!$R1 1049
12 TraesCS3B01G223500 chr2B 6907899 6908914 1015 True 1343.0 1343 90.295 1 1050 1 chr2B.!!$R2 1049

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
670 677 0.496382 TCTCTTTCCCCTTCTCCCCA 59.504 55.000 0.00 0.0 0.00 4.96 F
1005 1014 0.630673 AGGATTTGGCAGCCATGGTA 59.369 50.000 17.09 0.0 31.53 3.25 F
1598 1608 0.649475 CGCTGATCTTTCTCGCTTGG 59.351 55.000 0.00 0.0 0.00 3.61 F
3089 4193 1.202879 CCAAGGTGCCCAAGTACAAGA 60.203 52.381 0.00 0.0 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1916 3016 3.058914 GTCGCAACTAACACTGCTGAATT 60.059 43.478 0.00 0.00 36.38 2.17 R
2873 3973 2.634940 TCTTCTCCTGGAGTTCCTTGTG 59.365 50.000 22.50 6.24 36.82 3.33 R
3208 4312 0.306840 GAGCCATGATGCATCACACG 59.693 55.000 30.92 20.83 40.03 4.49 R
4561 5670 0.035152 AGATGCCTTGATGTCCGCAA 60.035 50.000 0.00 0.00 34.38 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
126 131 3.009723 GCAAACTATGAGGCAGCTACAA 58.990 45.455 0.00 0.00 0.00 2.41
374 379 3.455990 AATGCATGCAAATTGGCGATA 57.544 38.095 26.68 0.00 36.28 2.92
375 380 2.495409 TGCATGCAAATTGGCGATAG 57.505 45.000 20.30 0.00 36.28 2.08
445 450 9.810231 CGTTTTGCAAAATATTTTTGATAGCTT 57.190 25.926 26.24 0.00 0.00 3.74
646 653 2.235602 CTCTCTCCCCCTCTCTGCCA 62.236 65.000 0.00 0.00 0.00 4.92
670 677 0.496382 TCTCTTTCCCCTTCTCCCCA 59.504 55.000 0.00 0.00 0.00 4.96
785 793 3.866582 GGATCCCTCCACCCGCTG 61.867 72.222 0.00 0.00 41.64 5.18
1005 1014 0.630673 AGGATTTGGCAGCCATGGTA 59.369 50.000 17.09 0.00 31.53 3.25
1222 1232 4.371231 CCCTTCTCCCCCACCCCT 62.371 72.222 0.00 0.00 0.00 4.79
1598 1608 0.649475 CGCTGATCTTTCTCGCTTGG 59.351 55.000 0.00 0.00 0.00 3.61
1672 1682 7.285566 AGTAAATGACATAACTGATCCTGCAT 58.714 34.615 3.23 0.00 0.00 3.96
1676 1686 6.178607 TGACATAACTGATCCTGCATGTAT 57.821 37.500 0.00 0.00 0.00 2.29
1810 2910 8.154856 TGTTTTAGTAATCTAGCACTTTGGAGT 58.845 33.333 0.00 0.00 36.25 3.85
1916 3016 3.988976 AACTCTGCATTCCTCTGCTTA 57.011 42.857 0.00 0.00 42.75 3.09
2141 3241 8.898761 TCTCTGTTTGTAAAAATTGTTGCTAGA 58.101 29.630 0.00 0.00 0.00 2.43
2172 3272 7.338449 TCTGTAAGCCCATATTTACTTGTTTCC 59.662 37.037 0.00 0.00 32.37 3.13
2276 3376 5.730550 ACTGTGATGTTTTTCCTATCGCTA 58.269 37.500 0.00 0.00 33.65 4.26
2467 3567 5.241285 TGCTACTGAATGAATGCTGTTTCAA 59.759 36.000 2.28 0.00 38.98 2.69
2563 3663 4.588106 TGATCCTGTTTTTGGATTTCTGCA 59.412 37.500 0.00 0.00 43.68 4.41
2583 3683 4.692625 TGCAGCTGTTCTCTAAACTGAATC 59.307 41.667 16.64 0.00 0.00 2.52
2686 3786 6.759497 AATTTCAAGTTGGCCTCTACATAC 57.241 37.500 3.32 0.00 0.00 2.39
2873 3973 4.622740 GCTTCATATGTCAAAAGTTGGTGC 59.377 41.667 1.90 0.00 0.00 5.01
2941 4042 2.035832 GCACCCAACAATGTGTTTAGCT 59.964 45.455 0.00 0.00 38.77 3.32
3089 4193 1.202879 CCAAGGTGCCCAAGTACAAGA 60.203 52.381 0.00 0.00 0.00 3.02
3208 4312 2.551270 TCTGGGGATGGTAGGATATGC 58.449 52.381 0.00 0.00 0.00 3.14
3230 4334 1.770061 TGTGATGCATCATGGCTCCTA 59.230 47.619 30.89 2.94 39.30 2.94
3401 4505 3.567478 AGATAGGGTGCAGTGGATTTC 57.433 47.619 0.00 0.00 0.00 2.17
3595 4699 5.987098 AGAACTACTGATTGATGTGAGCAT 58.013 37.500 0.00 0.00 38.18 3.79
3685 4789 4.379243 CAACGGGTCGCTGGCTCT 62.379 66.667 0.00 0.00 0.00 4.09
3870 4974 3.692593 ACGTGTTTGGCTATTGAATACCC 59.307 43.478 0.00 0.00 0.00 3.69
4124 5232 8.743714 CCTAGAAAATAAGAGGCTGAATTGTTT 58.256 33.333 0.00 0.00 0.00 2.83
4268 5377 2.184322 CGCTGGATGCCTACGTGT 59.816 61.111 0.00 0.00 38.78 4.49
4361 5470 5.443283 TCCAGAAGAAAGGTCGCTATAGTA 58.557 41.667 0.84 0.00 0.00 1.82
4386 5495 1.927487 ATGATGGCCAGCTTTTGACA 58.073 45.000 23.69 0.00 0.00 3.58
4435 5544 9.271828 GACATAAATGGAAATTTGTGACCTTTT 57.728 29.630 12.88 4.34 36.53 2.27
4485 5594 7.936847 AGTTGACATATTTCTTGTAGTGTTGGA 59.063 33.333 0.00 0.00 0.00 3.53
4486 5595 8.564574 GTTGACATATTTCTTGTAGTGTTGGAA 58.435 33.333 0.00 0.00 0.00 3.53
4487 5596 8.322906 TGACATATTTCTTGTAGTGTTGGAAG 57.677 34.615 0.00 0.00 0.00 3.46
4488 5597 7.390440 TGACATATTTCTTGTAGTGTTGGAAGG 59.610 37.037 0.00 0.00 0.00 3.46
4489 5598 6.151144 ACATATTTCTTGTAGTGTTGGAAGGC 59.849 38.462 0.00 0.00 0.00 4.35
4490 5599 3.857157 TTCTTGTAGTGTTGGAAGGCT 57.143 42.857 0.00 0.00 0.00 4.58
4491 5600 3.402628 TCTTGTAGTGTTGGAAGGCTC 57.597 47.619 0.00 0.00 0.00 4.70
4492 5601 2.069273 CTTGTAGTGTTGGAAGGCTCG 58.931 52.381 0.00 0.00 0.00 5.03
4493 5602 0.320374 TGTAGTGTTGGAAGGCTCGG 59.680 55.000 0.00 0.00 0.00 4.63
4494 5603 0.391263 GTAGTGTTGGAAGGCTCGGG 60.391 60.000 0.00 0.00 0.00 5.14
4495 5604 2.180159 TAGTGTTGGAAGGCTCGGGC 62.180 60.000 0.00 0.00 37.82 6.13
4496 5605 3.565214 TGTTGGAAGGCTCGGGCA 61.565 61.111 10.74 0.00 40.87 5.36
4497 5606 2.747855 GTTGGAAGGCTCGGGCAG 60.748 66.667 10.74 0.00 40.87 4.85
4526 5635 3.726517 CGTGGCACGGGCAAGAAG 61.727 66.667 31.19 0.12 43.71 2.85
4527 5636 3.365265 GTGGCACGGGCAAGAAGG 61.365 66.667 13.89 0.00 43.71 3.46
4528 5637 3.565214 TGGCACGGGCAAGAAGGA 61.565 61.111 13.89 0.00 43.71 3.36
4529 5638 2.747855 GGCACGGGCAAGAAGGAG 60.748 66.667 13.89 0.00 43.71 3.69
4530 5639 2.347490 GCACGGGCAAGAAGGAGA 59.653 61.111 3.77 0.00 40.72 3.71
4531 5640 1.743252 GCACGGGCAAGAAGGAGAG 60.743 63.158 3.77 0.00 40.72 3.20
4532 5641 1.078848 CACGGGCAAGAAGGAGAGG 60.079 63.158 0.00 0.00 0.00 3.69
4533 5642 2.294078 ACGGGCAAGAAGGAGAGGG 61.294 63.158 0.00 0.00 0.00 4.30
4534 5643 3.002371 GGGCAAGAAGGAGAGGGG 58.998 66.667 0.00 0.00 0.00 4.79
4535 5644 1.616628 GGGCAAGAAGGAGAGGGGA 60.617 63.158 0.00 0.00 0.00 4.81
4536 5645 1.208165 GGGCAAGAAGGAGAGGGGAA 61.208 60.000 0.00 0.00 0.00 3.97
4537 5646 0.254462 GGCAAGAAGGAGAGGGGAAG 59.746 60.000 0.00 0.00 0.00 3.46
4538 5647 0.254462 GCAAGAAGGAGAGGGGAAGG 59.746 60.000 0.00 0.00 0.00 3.46
4539 5648 1.958288 CAAGAAGGAGAGGGGAAGGA 58.042 55.000 0.00 0.00 0.00 3.36
4540 5649 1.836802 CAAGAAGGAGAGGGGAAGGAG 59.163 57.143 0.00 0.00 0.00 3.69
4541 5650 0.341609 AGAAGGAGAGGGGAAGGAGG 59.658 60.000 0.00 0.00 0.00 4.30
4542 5651 0.692756 GAAGGAGAGGGGAAGGAGGG 60.693 65.000 0.00 0.00 0.00 4.30
4543 5652 2.040359 GGAGAGGGGAAGGAGGGG 60.040 72.222 0.00 0.00 0.00 4.79
4544 5653 2.788589 GAGAGGGGAAGGAGGGGT 59.211 66.667 0.00 0.00 0.00 4.95
4545 5654 1.383386 GAGAGGGGAAGGAGGGGTC 60.383 68.421 0.00 0.00 0.00 4.46
4546 5655 2.367107 GAGGGGAAGGAGGGGTCC 60.367 72.222 0.00 0.00 0.00 4.46
4547 5656 3.216371 AGGGGAAGGAGGGGTCCA 61.216 66.667 0.00 0.00 35.44 4.02
4548 5657 2.692741 GGGGAAGGAGGGGTCCAG 60.693 72.222 0.00 0.00 35.44 3.86
4549 5658 3.412408 GGGAAGGAGGGGTCCAGC 61.412 72.222 0.00 0.00 35.44 4.85
4550 5659 3.787001 GGAAGGAGGGGTCCAGCG 61.787 72.222 0.00 0.00 33.79 5.18
4551 5660 4.475135 GAAGGAGGGGTCCAGCGC 62.475 72.222 0.00 0.00 0.00 5.92
4562 5671 4.856801 CCAGCGCGGTGGCCTATT 62.857 66.667 40.57 0.00 35.02 1.73
4563 5672 3.576356 CAGCGCGGTGGCCTATTG 61.576 66.667 29.65 1.57 35.02 1.90
4567 5676 4.849310 GCGGTGGCCTATTGCGGA 62.849 66.667 3.32 0.00 42.61 5.54
4568 5677 2.895372 CGGTGGCCTATTGCGGAC 60.895 66.667 3.32 0.00 42.61 4.79
4569 5678 2.270850 GGTGGCCTATTGCGGACA 59.729 61.111 3.32 0.00 40.63 4.02
4570 5679 1.152963 GGTGGCCTATTGCGGACAT 60.153 57.895 3.32 0.00 45.62 3.06
4571 5680 1.166531 GGTGGCCTATTGCGGACATC 61.167 60.000 3.32 0.00 45.62 3.06
4572 5681 0.463654 GTGGCCTATTGCGGACATCA 60.464 55.000 3.32 0.00 45.62 3.07
4573 5682 0.254462 TGGCCTATTGCGGACATCAA 59.746 50.000 3.32 0.00 37.09 2.57
4574 5683 0.947244 GGCCTATTGCGGACATCAAG 59.053 55.000 0.00 0.00 42.61 3.02
4575 5684 0.947244 GCCTATTGCGGACATCAAGG 59.053 55.000 0.00 0.00 0.00 3.61
4576 5685 0.947244 CCTATTGCGGACATCAAGGC 59.053 55.000 0.00 0.00 0.00 4.35
4577 5686 1.667236 CTATTGCGGACATCAAGGCA 58.333 50.000 0.00 0.00 0.00 4.75
4578 5687 2.224606 CTATTGCGGACATCAAGGCAT 58.775 47.619 0.00 0.00 35.03 4.40
4579 5688 1.027357 ATTGCGGACATCAAGGCATC 58.973 50.000 0.00 0.00 35.03 3.91
4580 5689 0.035152 TTGCGGACATCAAGGCATCT 60.035 50.000 0.00 0.00 35.03 2.90
4581 5690 0.462581 TGCGGACATCAAGGCATCTC 60.463 55.000 0.00 0.00 0.00 2.75
4582 5691 1.493950 GCGGACATCAAGGCATCTCG 61.494 60.000 0.00 0.00 0.00 4.04
4583 5692 0.103026 CGGACATCAAGGCATCTCGA 59.897 55.000 0.00 0.00 0.00 4.04
4584 5693 1.863267 GGACATCAAGGCATCTCGAG 58.137 55.000 5.93 5.93 0.00 4.04
4585 5694 1.137872 GGACATCAAGGCATCTCGAGT 59.862 52.381 13.13 0.00 0.00 4.18
4586 5695 2.200067 GACATCAAGGCATCTCGAGTG 58.800 52.381 13.13 11.10 0.00 3.51
4587 5696 1.134580 ACATCAAGGCATCTCGAGTGG 60.135 52.381 13.13 7.02 0.00 4.00
4588 5697 0.179062 ATCAAGGCATCTCGAGTGGC 60.179 55.000 24.12 24.12 41.96 5.01
4589 5698 2.169789 CAAGGCATCTCGAGTGGCG 61.170 63.158 24.68 14.46 45.76 5.69
4590 5699 4.521062 AGGCATCTCGAGTGGCGC 62.521 66.667 24.68 17.48 45.76 6.53
4592 5701 4.854784 GCATCTCGAGTGGCGCGA 62.855 66.667 12.10 0.00 40.61 5.87
4607 5716 4.824515 CGAGGGGAGGCTCGAGGT 62.825 72.222 15.58 0.00 44.85 3.85
4608 5717 3.151022 GAGGGGAGGCTCGAGGTG 61.151 72.222 15.58 0.00 0.00 4.00
4609 5718 4.787280 AGGGGAGGCTCGAGGTGG 62.787 72.222 15.58 0.00 0.00 4.61
4611 5720 3.462678 GGGAGGCTCGAGGTGGTC 61.463 72.222 15.58 0.00 0.00 4.02
4617 5726 4.753662 CTCGAGGTGGTCGGGGGA 62.754 72.222 3.91 0.00 46.30 4.81
4634 5743 2.736995 ACGCGGTGTCAATGGTCG 60.737 61.111 12.47 0.00 0.00 4.79
4635 5744 2.431771 CGCGGTGTCAATGGTCGA 60.432 61.111 0.00 0.00 0.00 4.20
4636 5745 2.024868 CGCGGTGTCAATGGTCGAA 61.025 57.895 0.00 0.00 0.00 3.71
4637 5746 1.495951 GCGGTGTCAATGGTCGAAC 59.504 57.895 0.00 0.00 0.00 3.95
4638 5747 1.779061 CGGTGTCAATGGTCGAACG 59.221 57.895 0.00 0.00 0.00 3.95
4639 5748 1.495951 GGTGTCAATGGTCGAACGC 59.504 57.895 0.00 0.00 0.00 4.84
4640 5749 1.495951 GTGTCAATGGTCGAACGCC 59.504 57.895 0.00 0.00 0.00 5.68
4641 5750 1.669760 TGTCAATGGTCGAACGCCC 60.670 57.895 0.00 0.00 0.00 6.13
4642 5751 1.375523 GTCAATGGTCGAACGCCCT 60.376 57.895 0.00 0.00 0.00 5.19
4643 5752 1.375396 TCAATGGTCGAACGCCCTG 60.375 57.895 0.00 0.00 0.00 4.45
4644 5753 2.746277 AATGGTCGAACGCCCTGC 60.746 61.111 0.00 0.00 0.00 4.85
4645 5754 4.778143 ATGGTCGAACGCCCTGCC 62.778 66.667 0.00 0.00 0.00 4.85
4658 5767 4.834453 CTGCCAGGCGCTCCAGAG 62.834 72.222 7.64 0.00 38.78 3.35
4670 5779 3.257933 CCAGAGCACGACTTTGGC 58.742 61.111 6.80 0.00 43.22 4.52
4671 5780 1.302033 CCAGAGCACGACTTTGGCT 60.302 57.895 6.80 0.00 43.22 4.75
4672 5781 0.037326 CCAGAGCACGACTTTGGCTA 60.037 55.000 6.80 0.00 43.22 3.93
4673 5782 1.406069 CCAGAGCACGACTTTGGCTAT 60.406 52.381 6.80 0.00 43.22 2.97
4674 5783 1.929836 CAGAGCACGACTTTGGCTATC 59.070 52.381 0.00 0.00 38.15 2.08
4675 5784 1.550524 AGAGCACGACTTTGGCTATCA 59.449 47.619 0.00 0.00 38.15 2.15
4676 5785 2.169352 AGAGCACGACTTTGGCTATCAT 59.831 45.455 0.00 0.00 38.15 2.45
4677 5786 2.283298 AGCACGACTTTGGCTATCATG 58.717 47.619 0.00 0.00 35.82 3.07
4678 5787 1.331756 GCACGACTTTGGCTATCATGG 59.668 52.381 0.00 0.00 0.00 3.66
4679 5788 1.331756 CACGACTTTGGCTATCATGGC 59.668 52.381 0.00 0.00 0.00 4.40
4680 5789 1.065491 ACGACTTTGGCTATCATGGCA 60.065 47.619 0.00 0.00 40.80 4.92
4681 5790 2.224606 CGACTTTGGCTATCATGGCAT 58.775 47.619 0.00 0.00 42.07 4.40
4682 5791 2.225019 CGACTTTGGCTATCATGGCATC 59.775 50.000 0.00 0.00 42.07 3.91
4683 5792 2.555757 GACTTTGGCTATCATGGCATCC 59.444 50.000 0.00 0.00 42.07 3.51
4684 5793 1.891150 CTTTGGCTATCATGGCATCCC 59.109 52.381 0.00 0.00 42.07 3.85
4685 5794 1.151760 TTGGCTATCATGGCATCCCT 58.848 50.000 0.00 0.00 42.07 4.20
4686 5795 1.151760 TGGCTATCATGGCATCCCTT 58.848 50.000 0.00 0.00 37.59 3.95
4687 5796 1.500303 TGGCTATCATGGCATCCCTTT 59.500 47.619 0.00 0.00 37.59 3.11
4688 5797 2.091166 TGGCTATCATGGCATCCCTTTT 60.091 45.455 0.00 0.00 37.59 2.27
4689 5798 2.967887 GGCTATCATGGCATCCCTTTTT 59.032 45.455 0.00 0.00 0.00 1.94
4690 5799 3.243975 GGCTATCATGGCATCCCTTTTTG 60.244 47.826 0.00 0.00 0.00 2.44
4691 5800 3.385755 GCTATCATGGCATCCCTTTTTGT 59.614 43.478 0.00 0.00 0.00 2.83
4692 5801 3.899052 ATCATGGCATCCCTTTTTGTG 57.101 42.857 0.00 0.00 0.00 3.33
4693 5802 1.901159 TCATGGCATCCCTTTTTGTGG 59.099 47.619 0.00 0.00 0.00 4.17
4694 5803 1.901159 CATGGCATCCCTTTTTGTGGA 59.099 47.619 0.00 0.00 34.54 4.02
4695 5804 2.094100 TGGCATCCCTTTTTGTGGAA 57.906 45.000 0.00 0.00 33.54 3.53
4696 5805 2.618794 TGGCATCCCTTTTTGTGGAAT 58.381 42.857 0.00 0.00 33.54 3.01
4697 5806 2.302445 TGGCATCCCTTTTTGTGGAATG 59.698 45.455 0.00 0.00 33.54 2.67
4698 5807 2.355007 GGCATCCCTTTTTGTGGAATGG 60.355 50.000 0.00 0.00 33.54 3.16
4699 5808 2.355007 GCATCCCTTTTTGTGGAATGGG 60.355 50.000 0.00 0.00 42.50 4.00
4700 5809 1.347062 TCCCTTTTTGTGGAATGGGC 58.653 50.000 4.23 0.00 41.48 5.36
4701 5810 0.037419 CCCTTTTTGTGGAATGGGCG 60.037 55.000 0.00 0.00 37.23 6.13
4702 5811 0.678950 CCTTTTTGTGGAATGGGCGT 59.321 50.000 0.00 0.00 0.00 5.68
4703 5812 1.605202 CCTTTTTGTGGAATGGGCGTG 60.605 52.381 0.00 0.00 0.00 5.34
4704 5813 0.390860 TTTTTGTGGAATGGGCGTGG 59.609 50.000 0.00 0.00 0.00 4.94
4705 5814 2.093537 TTTTGTGGAATGGGCGTGGC 62.094 55.000 0.00 0.00 0.00 5.01
4717 5826 3.716006 CGTGGCCACTTGCGTCTG 61.716 66.667 32.28 11.43 42.61 3.51
4718 5827 3.357079 GTGGCCACTTGCGTCTGG 61.357 66.667 29.12 0.00 42.61 3.86
4730 5839 4.341783 GTCTGGCAGCTGCAGGGT 62.342 66.667 37.63 0.00 44.36 4.34
4731 5840 4.340246 TCTGGCAGCTGCAGGGTG 62.340 66.667 37.63 21.70 44.36 4.61
4732 5841 4.340246 CTGGCAGCTGCAGGGTGA 62.340 66.667 37.63 14.13 45.36 4.02
4733 5842 3.855503 CTGGCAGCTGCAGGGTGAA 62.856 63.158 37.63 13.94 45.36 3.18
4734 5843 3.060615 GGCAGCTGCAGGGTGAAG 61.061 66.667 37.63 0.00 45.36 3.02
4735 5844 2.282040 GCAGCTGCAGGGTGAAGT 60.282 61.111 33.36 0.00 45.36 3.01
4736 5845 1.003355 GCAGCTGCAGGGTGAAGTA 60.003 57.895 33.36 0.00 45.36 2.24
4737 5846 0.606401 GCAGCTGCAGGGTGAAGTAA 60.606 55.000 33.36 0.00 45.36 2.24
4738 5847 1.896220 CAGCTGCAGGGTGAAGTAAA 58.104 50.000 17.12 0.00 45.36 2.01
4739 5848 1.537202 CAGCTGCAGGGTGAAGTAAAC 59.463 52.381 17.12 0.00 45.36 2.01
4740 5849 1.142870 AGCTGCAGGGTGAAGTAAACA 59.857 47.619 17.12 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
126 131 2.896685 TGGAAGCGGGTCAAATTTGAAT 59.103 40.909 22.07 5.22 39.21 2.57
395 400 6.142320 CGGCACAACTAAATTTTTCTCTGAAC 59.858 38.462 0.00 0.00 0.00 3.18
445 450 6.783708 AAAACTATGGGTGTTTTGTGAAGA 57.216 33.333 4.15 0.00 43.34 2.87
646 653 3.178046 GGAGAAGGGGAAAGAGAGAGTT 58.822 50.000 0.00 0.00 0.00 3.01
670 677 2.512896 GCGGGCTGGATCTGGATT 59.487 61.111 0.00 0.00 0.00 3.01
986 995 0.630673 TACCATGGCTGCCAAATCCT 59.369 50.000 27.24 5.54 36.95 3.24
1315 1325 2.160721 TATCCTTCTTGAGGTCCGCT 57.839 50.000 0.00 0.00 46.39 5.52
1333 1343 2.775911 AGTGCTGCAGCTTCTTGATA 57.224 45.000 36.61 13.65 42.66 2.15
1598 1608 6.485648 ACAGTATTGGTTGGAAGTTTGTCTAC 59.514 38.462 0.00 0.00 0.00 2.59
1613 1623 5.876357 ACAAGTAACATGGACAGTATTGGT 58.124 37.500 0.00 0.00 0.00 3.67
1664 1674 5.766670 CCACTACAAATGATACATGCAGGAT 59.233 40.000 4.84 0.00 0.00 3.24
1672 1682 6.071051 TGCTGAGTACCACTACAAATGATACA 60.071 38.462 0.00 0.00 0.00 2.29
1676 1686 4.882842 TGCTGAGTACCACTACAAATGA 57.117 40.909 0.00 0.00 0.00 2.57
1810 2910 4.387256 GGCAACAATTTATTTACGCTGCAA 59.613 37.500 0.00 0.00 0.00 4.08
1916 3016 3.058914 GTCGCAACTAACACTGCTGAATT 60.059 43.478 0.00 0.00 36.38 2.17
2141 3241 7.380423 AGTAAATATGGGCTTACAGACAGAT 57.620 36.000 0.00 0.00 31.65 2.90
2276 3376 8.639761 ACAACAGAAACTAGACTACAACATAGT 58.360 33.333 0.00 0.00 0.00 2.12
2563 3663 5.012561 ACCAGATTCAGTTTAGAGAACAGCT 59.987 40.000 0.00 0.00 0.00 4.24
2686 3786 5.408604 ACCTTAGAACATGCTTTACAACTCG 59.591 40.000 0.00 0.00 0.00 4.18
2839 3939 5.263599 TGACATATGAAGCCCAAAATCTGT 58.736 37.500 10.38 0.00 0.00 3.41
2857 3957 3.430651 CCTTGTGCACCAACTTTTGACAT 60.431 43.478 15.69 0.00 0.00 3.06
2873 3973 2.634940 TCTTCTCCTGGAGTTCCTTGTG 59.365 50.000 22.50 6.24 36.82 3.33
2941 4042 3.350909 CTTCGACGATGCGGTGGGA 62.351 63.158 0.00 0.00 0.00 4.37
3089 4193 2.722201 GGACGGAGGGCGTGATCTT 61.722 63.158 0.00 0.00 0.00 2.40
3208 4312 0.306840 GAGCCATGATGCATCACACG 59.693 55.000 30.92 20.83 40.03 4.49
3230 4334 8.194104 CAGAGCATCATAGTAAAGTACTTGACT 58.806 37.037 25.70 25.70 37.60 3.41
3401 4505 8.837389 CATAAATGATGACTAGATGGCCATATG 58.163 37.037 23.21 15.58 37.82 1.78
3660 4764 2.740714 GCGACCCGTTGATCTGCAC 61.741 63.158 0.00 0.00 0.00 4.57
3685 4789 0.044092 TAGGTCCTTGATGGCCCTGA 59.956 55.000 0.00 0.00 45.20 3.86
3833 4937 4.884668 AACACGTCTTCTCTATTTGGGA 57.115 40.909 0.00 0.00 0.00 4.37
3870 4974 6.359617 CAGCCAAACAAAGTACTTTACAATCG 59.640 38.462 20.15 9.66 0.00 3.34
4110 5218 3.820595 GGCCAAACAATTCAGCCTC 57.179 52.632 0.00 0.00 40.57 4.70
4206 5315 2.283604 GCCCGGTCCAATTGGGTT 60.284 61.111 24.29 0.00 45.19 4.11
4361 5470 4.527816 TCAAAAGCTGGCCATCATAAACTT 59.472 37.500 5.51 0.00 0.00 2.66
4509 5618 3.726517 CTTCTTGCCCGTGCCACG 61.727 66.667 10.95 10.95 42.11 4.94
4510 5619 3.365265 CCTTCTTGCCCGTGCCAC 61.365 66.667 0.00 0.00 36.33 5.01
4511 5620 3.551496 CTCCTTCTTGCCCGTGCCA 62.551 63.158 0.00 0.00 36.33 4.92
4512 5621 2.747855 CTCCTTCTTGCCCGTGCC 60.748 66.667 0.00 0.00 36.33 5.01
4513 5622 1.743252 CTCTCCTTCTTGCCCGTGC 60.743 63.158 0.00 0.00 38.26 5.34
4514 5623 1.078848 CCTCTCCTTCTTGCCCGTG 60.079 63.158 0.00 0.00 0.00 4.94
4515 5624 2.294078 CCCTCTCCTTCTTGCCCGT 61.294 63.158 0.00 0.00 0.00 5.28
4516 5625 2.586792 CCCTCTCCTTCTTGCCCG 59.413 66.667 0.00 0.00 0.00 6.13
4517 5626 1.208165 TTCCCCTCTCCTTCTTGCCC 61.208 60.000 0.00 0.00 0.00 5.36
4518 5627 0.254462 CTTCCCCTCTCCTTCTTGCC 59.746 60.000 0.00 0.00 0.00 4.52
4519 5628 0.254462 CCTTCCCCTCTCCTTCTTGC 59.746 60.000 0.00 0.00 0.00 4.01
4520 5629 1.836802 CTCCTTCCCCTCTCCTTCTTG 59.163 57.143 0.00 0.00 0.00 3.02
4521 5630 1.274126 CCTCCTTCCCCTCTCCTTCTT 60.274 57.143 0.00 0.00 0.00 2.52
4522 5631 0.341609 CCTCCTTCCCCTCTCCTTCT 59.658 60.000 0.00 0.00 0.00 2.85
4523 5632 0.692756 CCCTCCTTCCCCTCTCCTTC 60.693 65.000 0.00 0.00 0.00 3.46
4524 5633 1.398234 CCCTCCTTCCCCTCTCCTT 59.602 63.158 0.00 0.00 0.00 3.36
4525 5634 2.652113 CCCCTCCTTCCCCTCTCCT 61.652 68.421 0.00 0.00 0.00 3.69
4526 5635 2.040359 CCCCTCCTTCCCCTCTCC 60.040 72.222 0.00 0.00 0.00 3.71
4527 5636 1.383386 GACCCCTCCTTCCCCTCTC 60.383 68.421 0.00 0.00 0.00 3.20
4528 5637 2.788589 GACCCCTCCTTCCCCTCT 59.211 66.667 0.00 0.00 0.00 3.69
4529 5638 2.367107 GGACCCCTCCTTCCCCTC 60.367 72.222 0.00 0.00 33.07 4.30
4530 5639 3.216371 TGGACCCCTCCTTCCCCT 61.216 66.667 0.00 0.00 37.48 4.79
4531 5640 2.692741 CTGGACCCCTCCTTCCCC 60.693 72.222 0.00 0.00 37.48 4.81
4532 5641 3.412408 GCTGGACCCCTCCTTCCC 61.412 72.222 0.00 0.00 37.48 3.97
4533 5642 3.787001 CGCTGGACCCCTCCTTCC 61.787 72.222 0.00 0.00 37.48 3.46
4534 5643 4.475135 GCGCTGGACCCCTCCTTC 62.475 72.222 0.00 0.00 37.48 3.46
4545 5654 4.856801 AATAGGCCACCGCGCTGG 62.857 66.667 16.30 16.30 46.41 4.85
4546 5655 3.576356 CAATAGGCCACCGCGCTG 61.576 66.667 5.01 0.00 35.02 5.18
4550 5659 4.849310 TCCGCAATAGGCCACCGC 62.849 66.667 5.01 0.08 40.31 5.68
4551 5660 2.895372 GTCCGCAATAGGCCACCG 60.895 66.667 5.01 0.00 40.31 4.94
4552 5661 1.152963 ATGTCCGCAATAGGCCACC 60.153 57.895 5.01 0.00 40.31 4.61
4553 5662 0.463654 TGATGTCCGCAATAGGCCAC 60.464 55.000 5.01 0.00 40.31 5.01
4554 5663 0.254462 TTGATGTCCGCAATAGGCCA 59.746 50.000 5.01 0.00 40.31 5.36
4555 5664 0.947244 CTTGATGTCCGCAATAGGCC 59.053 55.000 0.00 0.00 40.31 5.19
4556 5665 0.947244 CCTTGATGTCCGCAATAGGC 59.053 55.000 0.00 0.00 39.90 3.93
4557 5666 0.947244 GCCTTGATGTCCGCAATAGG 59.053 55.000 0.00 0.00 0.00 2.57
4558 5667 1.667236 TGCCTTGATGTCCGCAATAG 58.333 50.000 0.00 0.00 0.00 1.73
4559 5668 2.158769 AGATGCCTTGATGTCCGCAATA 60.159 45.455 0.00 0.00 34.38 1.90
4560 5669 1.027357 GATGCCTTGATGTCCGCAAT 58.973 50.000 0.00 0.00 34.38 3.56
4561 5670 0.035152 AGATGCCTTGATGTCCGCAA 60.035 50.000 0.00 0.00 34.38 4.85
4562 5671 0.462581 GAGATGCCTTGATGTCCGCA 60.463 55.000 0.00 0.00 35.35 5.69
4563 5672 1.493950 CGAGATGCCTTGATGTCCGC 61.494 60.000 0.00 0.00 0.00 5.54
4564 5673 0.103026 TCGAGATGCCTTGATGTCCG 59.897 55.000 0.00 0.00 0.00 4.79
4565 5674 1.137872 ACTCGAGATGCCTTGATGTCC 59.862 52.381 21.68 0.00 32.58 4.02
4566 5675 2.200067 CACTCGAGATGCCTTGATGTC 58.800 52.381 21.68 0.00 32.58 3.06
4567 5676 1.134580 CCACTCGAGATGCCTTGATGT 60.135 52.381 21.68 0.00 32.58 3.06
4568 5677 1.579698 CCACTCGAGATGCCTTGATG 58.420 55.000 21.68 2.97 32.58 3.07
4569 5678 0.179062 GCCACTCGAGATGCCTTGAT 60.179 55.000 21.68 0.00 32.58 2.57
4570 5679 1.219124 GCCACTCGAGATGCCTTGA 59.781 57.895 21.68 0.00 0.00 3.02
4571 5680 2.169789 CGCCACTCGAGATGCCTTG 61.170 63.158 21.68 5.38 41.67 3.61
4572 5681 2.185350 CGCCACTCGAGATGCCTT 59.815 61.111 21.68 0.00 41.67 4.35
4573 5682 4.521062 GCGCCACTCGAGATGCCT 62.521 66.667 21.68 0.00 41.67 4.75
4575 5684 4.854784 TCGCGCCACTCGAGATGC 62.855 66.667 21.68 18.93 41.93 3.91
4591 5700 3.151022 CACCTCGAGCCTCCCCTC 61.151 72.222 6.99 0.00 0.00 4.30
4592 5701 4.787280 CCACCTCGAGCCTCCCCT 62.787 72.222 6.99 0.00 0.00 4.79
4594 5703 3.462678 GACCACCTCGAGCCTCCC 61.463 72.222 6.99 0.00 0.00 4.30
4595 5704 3.827898 CGACCACCTCGAGCCTCC 61.828 72.222 6.99 0.00 46.14 4.30
4596 5705 3.827898 CCGACCACCTCGAGCCTC 61.828 72.222 6.99 0.00 46.14 4.70
4600 5709 4.753662 TCCCCCGACCACCTCGAG 62.754 72.222 5.13 5.13 46.14 4.04
4612 5721 4.404098 ATTGACACCGCGTCCCCC 62.404 66.667 4.92 0.00 44.71 5.40
4613 5722 3.124921 CATTGACACCGCGTCCCC 61.125 66.667 4.92 0.00 44.71 4.81
4614 5723 3.124921 CCATTGACACCGCGTCCC 61.125 66.667 4.92 0.00 44.71 4.46
4615 5724 2.358247 ACCATTGACACCGCGTCC 60.358 61.111 4.92 0.00 44.71 4.79
4616 5725 2.726691 CGACCATTGACACCGCGTC 61.727 63.158 4.92 0.00 45.61 5.19
4617 5726 2.702751 TTCGACCATTGACACCGCGT 62.703 55.000 4.92 0.00 0.00 6.01
4618 5727 2.024868 TTCGACCATTGACACCGCG 61.025 57.895 0.00 0.00 0.00 6.46
4619 5728 1.495951 GTTCGACCATTGACACCGC 59.504 57.895 0.00 0.00 0.00 5.68
4620 5729 1.779061 CGTTCGACCATTGACACCG 59.221 57.895 0.00 0.00 0.00 4.94
4621 5730 1.495951 GCGTTCGACCATTGACACC 59.504 57.895 0.00 0.00 0.00 4.16
4622 5731 1.495951 GGCGTTCGACCATTGACAC 59.504 57.895 0.00 0.00 0.00 3.67
4623 5732 1.669760 GGGCGTTCGACCATTGACA 60.670 57.895 12.54 0.00 32.40 3.58
4624 5733 1.375523 AGGGCGTTCGACCATTGAC 60.376 57.895 19.47 0.00 35.25 3.18
4625 5734 1.375396 CAGGGCGTTCGACCATTGA 60.375 57.895 19.47 0.00 35.25 2.57
4626 5735 3.039202 GCAGGGCGTTCGACCATTG 62.039 63.158 19.47 10.56 35.25 2.82
4627 5736 2.746277 GCAGGGCGTTCGACCATT 60.746 61.111 19.47 0.00 35.25 3.16
4628 5737 4.778143 GGCAGGGCGTTCGACCAT 62.778 66.667 19.47 3.67 35.25 3.55
4651 5760 1.294659 GCCAAAGTCGTGCTCTGGAG 61.295 60.000 6.35 0.00 0.00 3.86
4652 5761 1.301716 GCCAAAGTCGTGCTCTGGA 60.302 57.895 6.35 0.00 0.00 3.86
4653 5762 0.037326 TAGCCAAAGTCGTGCTCTGG 60.037 55.000 0.00 0.00 36.57 3.86
4654 5763 1.929836 GATAGCCAAAGTCGTGCTCTG 59.070 52.381 0.00 0.00 36.57 3.35
4655 5764 1.550524 TGATAGCCAAAGTCGTGCTCT 59.449 47.619 0.00 0.00 36.57 4.09
4656 5765 2.010145 TGATAGCCAAAGTCGTGCTC 57.990 50.000 0.00 0.00 36.57 4.26
4657 5766 2.283298 CATGATAGCCAAAGTCGTGCT 58.717 47.619 0.00 0.00 39.10 4.40
4658 5767 1.331756 CCATGATAGCCAAAGTCGTGC 59.668 52.381 0.00 0.00 0.00 5.34
4659 5768 1.331756 GCCATGATAGCCAAAGTCGTG 59.668 52.381 0.00 0.00 0.00 4.35
4660 5769 1.065491 TGCCATGATAGCCAAAGTCGT 60.065 47.619 0.00 0.00 0.00 4.34
4661 5770 1.667236 TGCCATGATAGCCAAAGTCG 58.333 50.000 0.00 0.00 0.00 4.18
4662 5771 2.555757 GGATGCCATGATAGCCAAAGTC 59.444 50.000 0.00 0.00 0.00 3.01
4663 5772 2.590821 GGATGCCATGATAGCCAAAGT 58.409 47.619 0.00 0.00 0.00 2.66
4664 5773 1.891150 GGGATGCCATGATAGCCAAAG 59.109 52.381 0.00 0.00 0.00 2.77
4665 5774 1.500303 AGGGATGCCATGATAGCCAAA 59.500 47.619 5.86 0.00 0.00 3.28
4666 5775 1.151760 AGGGATGCCATGATAGCCAA 58.848 50.000 5.86 0.00 0.00 4.52
4667 5776 1.151760 AAGGGATGCCATGATAGCCA 58.848 50.000 5.86 0.00 0.00 4.75
4668 5777 2.299326 AAAGGGATGCCATGATAGCC 57.701 50.000 5.86 0.00 0.00 3.93
4669 5778 3.385755 ACAAAAAGGGATGCCATGATAGC 59.614 43.478 5.86 0.00 0.00 2.97
4670 5779 4.202182 CCACAAAAAGGGATGCCATGATAG 60.202 45.833 5.86 0.00 0.00 2.08
4671 5780 3.705579 CCACAAAAAGGGATGCCATGATA 59.294 43.478 5.86 0.00 0.00 2.15
4672 5781 2.502538 CCACAAAAAGGGATGCCATGAT 59.497 45.455 5.86 0.00 0.00 2.45
4673 5782 1.901159 CCACAAAAAGGGATGCCATGA 59.099 47.619 5.86 0.00 0.00 3.07
4674 5783 1.901159 TCCACAAAAAGGGATGCCATG 59.099 47.619 5.86 1.33 0.00 3.66
4675 5784 2.323999 TCCACAAAAAGGGATGCCAT 57.676 45.000 5.86 0.00 0.00 4.40
4676 5785 2.094100 TTCCACAAAAAGGGATGCCA 57.906 45.000 5.86 0.00 32.15 4.92
4677 5786 2.355007 CCATTCCACAAAAAGGGATGCC 60.355 50.000 0.00 0.00 40.26 4.40
4678 5787 2.355007 CCCATTCCACAAAAAGGGATGC 60.355 50.000 0.00 0.00 40.26 3.91
4679 5788 2.355007 GCCCATTCCACAAAAAGGGATG 60.355 50.000 0.00 0.00 41.10 3.51
4680 5789 1.908619 GCCCATTCCACAAAAAGGGAT 59.091 47.619 0.00 0.00 38.11 3.85
4681 5790 1.347062 GCCCATTCCACAAAAAGGGA 58.653 50.000 0.00 0.00 38.11 4.20
4682 5791 0.037419 CGCCCATTCCACAAAAAGGG 60.037 55.000 0.00 0.00 38.62 3.95
4683 5792 0.678950 ACGCCCATTCCACAAAAAGG 59.321 50.000 0.00 0.00 0.00 3.11
4684 5793 1.605202 CCACGCCCATTCCACAAAAAG 60.605 52.381 0.00 0.00 0.00 2.27
4685 5794 0.390860 CCACGCCCATTCCACAAAAA 59.609 50.000 0.00 0.00 0.00 1.94
4686 5795 2.045280 CCACGCCCATTCCACAAAA 58.955 52.632 0.00 0.00 0.00 2.44
4687 5796 2.569354 GCCACGCCCATTCCACAAA 61.569 57.895 0.00 0.00 0.00 2.83
4688 5797 2.988684 GCCACGCCCATTCCACAA 60.989 61.111 0.00 0.00 0.00 3.33
4713 5822 4.341783 ACCCTGCAGCTGCCAGAC 62.342 66.667 34.64 8.86 41.18 3.51
4714 5823 4.340246 CACCCTGCAGCTGCCAGA 62.340 66.667 34.64 16.55 41.18 3.86
4715 5824 3.855503 TTCACCCTGCAGCTGCCAG 62.856 63.158 34.64 28.01 41.18 4.85
4716 5825 3.855503 CTTCACCCTGCAGCTGCCA 62.856 63.158 34.64 21.30 41.18 4.92
4717 5826 2.469465 TACTTCACCCTGCAGCTGCC 62.469 60.000 34.64 17.82 41.18 4.85
4718 5827 0.606401 TTACTTCACCCTGCAGCTGC 60.606 55.000 31.89 31.89 42.50 5.25
4719 5828 1.537202 GTTTACTTCACCCTGCAGCTG 59.463 52.381 10.11 10.11 0.00 4.24
4720 5829 1.142870 TGTTTACTTCACCCTGCAGCT 59.857 47.619 8.66 0.00 0.00 4.24
4721 5830 1.604604 TGTTTACTTCACCCTGCAGC 58.395 50.000 8.66 0.00 0.00 5.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.