AutoCloner

Multiple sequence alignment - TraesCS3B01G223300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3B01G223300	chr3B	100.000	3197	0	0	1	3197	292019655	292022851	0.000000e+00	5904.0
1	TraesCS3B01G223300	chr3B	100.000	1907	0	0	3437	5343	292023091	292024997	0.000000e+00	3522.0
2	TraesCS3B01G223300	chr3B	83.995	731	79	24	1	707	783089498	783090214	0.000000e+00	667.0
3	TraesCS3B01G223300	chr3B	81.395	688	82	30	98	749	6047131	6046454	2.210000e-143	520.0
4	TraesCS3B01G223300	chr3D	97.600	2458	41	6	751	3195	268143946	268141494	0.000000e+00	4196.0
5	TraesCS3B01G223300	chr3D	97.036	1282	24	5	3452	4725	268141236	268139961	0.000000e+00	2145.0
6	TraesCS3B01G223300	chr3D	90.845	568	27	6	4778	5343	268070701	268070157	0.000000e+00	737.0
7	TraesCS3B01G223300	chr3D	87.524	529	47	13	4	518	613585503	613584980	1.280000e-165	593.0
8	TraesCS3B01G223300	chr3D	82.439	205	27	8	2942	3143	570500795	570500597	2.560000e-38	171.0
9	TraesCS3B01G223300	chr3D	81.553	206	28	9	2942	3143	35710707	35710906	1.540000e-35	161.0
10	TraesCS3B01G223300	chr3A	97.085	1544	27	5	752	2279	343234136	343232595	0.000000e+00	2586.0
11	TraesCS3B01G223300	chr3A	93.858	1498	39	10	3454	4940	343230074	343228619	0.000000e+00	2207.0
12	TraesCS3B01G223300	chr3A	98.048	461	9	0	2592	3052	343231018	343230558	0.000000e+00	802.0
13	TraesCS3B01G223300	chr3A	83.165	790	81	30	1	748	691039277	691040056	0.000000e+00	675.0
14	TraesCS3B01G223300	chr3A	93.056	432	28	2	4910	5340	343228618	343228188	9.770000e-177	630.0
15	TraesCS3B01G223300	chr3A	96.639	357	9	3	2268	2622	343231539	343231184	1.660000e-164	590.0
16	TraesCS3B01G223300	chr3A	100.000	106	0	0	3054	3159	343230431	343230326	4.220000e-46	196.0
17	TraesCS3B01G223300	chr4D	84.585	772	84	22	1	748	8881787	8881027	0.000000e+00	734.0
18	TraesCS3B01G223300	chr4D	84.951	711	66	26	10	694	472499393	472498698	0.000000e+00	682.0
19	TraesCS3B01G223300	chr4D	81.951	205	28	8	2942	3143	23910481	23910283	1.190000e-36	165.0
20	TraesCS3B01G223300	chr7D	83.655	673	76	25	98	749	474699991	474700650	2.130000e-168	603.0
21	TraesCS3B01G223300	chr7D	82.070	686	67	30	99	748	126659382	126658717	7.880000e-148	534.0
22	TraesCS3B01G223300	chr7D	83.803	426	52	14	4924	5338	41696433	41696852	6.490000e-104	388.0
23	TraesCS3B01G223300	chr5D	87.743	514	47	12	1	502	9590703	9591212	2.140000e-163	586.0
24	TraesCS3B01G223300	chr5D	87.023	524	50	16	1	516	554848445	554847932	4.640000e-160	575.0
25	TraesCS3B01G223300	chr1A	83.183	666	83	23	97	748	448632975	448632325	2.770000e-162	582.0
26	TraesCS3B01G223300	chr1A	97.059	34	1	0	2942	2975	77099302	77099335	2.080000e-04	58.4
27	TraesCS3B01G223300	chr4B	84.577	603	72	17	154	749	658965287	658965875	3.590000e-161	579.0
28	TraesCS3B01G223300	chr1D	81.818	704	75	33	93	759	247134033	247133346	4.710000e-150	542.0
29	TraesCS3B01G223300	chr6D	82.029	690	73	28	93	749	324813651	324812980	1.690000e-149	540.0
30	TraesCS3B01G223300	chr6D	85.799	338	38	9	4927	5257	460390100	460389766	3.060000e-92	350.0
31	TraesCS3B01G223300	chr2D	83.411	428	52	17	4928	5343	30739284	30739704	3.910000e-101	379.0
32	TraesCS3B01G223300	chr7A	83.292	407	56	8	4940	5342	15711280	15710882	1.090000e-96	364.0
33	TraesCS3B01G223300	chr6B	85.938	320	34	11	5020	5336	185111549	185111860	1.110000e-86	331.0
34	TraesCS3B01G223300	chr4A	82.258	372	57	7	4975	5343	106338622	106338257	4.020000e-81	313.0
35	TraesCS3B01G223300	chrUn	80.101	397	67	9	4933	5320	320341650	320341257	8.760000e-73	285.0
36	TraesCS3B01G223300	chr5A	94.872	39	2	0	4928	4966	396382283	396382245	1.610000e-05	62.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3B01G223300	chr3B	292019655	292024997	5342	False	4713.0	5904	100.000000	1	5343	2	chr3B.!!$F2	5342
1	TraesCS3B01G223300	chr3B	783089498	783090214	716	False	667.0	667	83.995000	1	707	1	chr3B.!!$F1	706
2	TraesCS3B01G223300	chr3B	6046454	6047131	677	True	520.0	520	81.395000	98	749	1	chr3B.!!$R1	651
3	TraesCS3B01G223300	chr3D	268139961	268143946	3985	True	3170.5	4196	97.318000	751	4725	2	chr3D.!!$R4	3974
4	TraesCS3B01G223300	chr3D	268070157	268070701	544	True	737.0	737	90.845000	4778	5343	1	chr3D.!!$R1	565
5	TraesCS3B01G223300	chr3D	613584980	613585503	523	True	593.0	593	87.524000	4	518	1	chr3D.!!$R3	514
6	TraesCS3B01G223300	chr3A	343228188	343234136	5948	True	1168.5	2586	96.447667	752	5340	6	chr3A.!!$R1	4588
7	TraesCS3B01G223300	chr3A	691039277	691040056	779	False	675.0	675	83.165000	1	748	1	chr3A.!!$F1	747
8	TraesCS3B01G223300	chr4D	8881027	8881787	760	True	734.0	734	84.585000	1	748	1	chr4D.!!$R1	747
9	TraesCS3B01G223300	chr4D	472498698	472499393	695	True	682.0	682	84.951000	10	694	1	chr4D.!!$R3	684
10	TraesCS3B01G223300	chr7D	474699991	474700650	659	False	603.0	603	83.655000	98	749	1	chr7D.!!$F2	651
11	TraesCS3B01G223300	chr7D	126658717	126659382	665	True	534.0	534	82.070000	99	748	1	chr7D.!!$R1	649
12	TraesCS3B01G223300	chr5D	9590703	9591212	509	False	586.0	586	87.743000	1	502	1	chr5D.!!$F1	501
13	TraesCS3B01G223300	chr5D	554847932	554848445	513	True	575.0	575	87.023000	1	516	1	chr5D.!!$R1	515
14	TraesCS3B01G223300	chr1A	448632325	448632975	650	True	582.0	582	83.183000	97	748	1	chr1A.!!$R1	651
15	TraesCS3B01G223300	chr4B	658965287	658965875	588	False	579.0	579	84.577000	154	749	1	chr4B.!!$F1	595
16	TraesCS3B01G223300	chr1D	247133346	247134033	687	True	542.0	542	81.818000	93	759	1	chr1D.!!$R1	666
17	TraesCS3B01G223300	chr6D	324812980	324813651	671	True	540.0	540	82.029000	93	749	1	chr6D.!!$R1	656

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
335	433	0.104304	ACCGTGACTCTCGCAAAAGT	59.896	50.0	0.00	0.00	0.0	2.66	F
618	749	0.249238	AAAAGCCGAAAACGCATGCA	60.249	45.0	19.57	0.00	0.0	3.96	F
733	866	0.741221	AGGTTTCGAATGAGCGCTCC	60.741	55.0	33.23	17.73	0.0	4.70	F
1096	1245	0.826256	TCCGCTGTGGTACTCACTGT	60.826	55.0	7.20	0.00	46.2	3.55	F
2475	3692	1.258676	ACTGGTTCGTTCTCCCTCTC	58.741	55.0	0.00	0.00	0.0	3.20	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1662	1811	0.330604	ACAATGACATGAGCCCTGCT	59.669	50.0	0.00	0.0	43.88	4.24	R
2475	3692	0.736636	ATGACATGCATTGTGGCTCG	59.263	50.0	0.00	0.0	39.18	5.03	R
2667	4080	7.439157	TGTGAATATTGACAAGGTCTTCAAG	57.561	36.0	5.18	0.0	35.25	3.02	R
2818	4231	1.265454	ATCAGGTGAACGAGGGGGAC	61.265	60.0	0.00	0.0	0.00	4.46	R
4465	6010	0.166597	CTACGTCGTTAGTCGCCACA	59.833	55.0	1.78	0.0	39.67	4.17	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
335	433	0.104304	ACCGTGACTCTCGCAAAAGT	59.896	50.000	0.00	0.00	0.00	2.66
337	435	2.029290	ACCGTGACTCTCGCAAAAGTAT	60.029	45.455	0.00	0.00	0.00	2.12
438	545	3.791640	AGGCACGACCATGACTCA	58.208	55.556	0.00	0.00	43.14	3.41
618	749	0.249238	AAAAGCCGAAAACGCATGCA	60.249	45.000	19.57	0.00	0.00	3.96
663	795	2.234613	CGAAGGAGCGCTCAAAACA	58.765	52.632	36.27	0.00	0.00	2.83
670	802	1.087202	AGCGCTCAAAACACGACACA	61.087	50.000	2.64	0.00	0.00	3.72
712	844	1.301716	AAGTGGCGCTGATCGTTGT	60.302	52.632	7.64	0.00	41.07	3.32
719	852	1.148310	CGCTGATCGTTGTGAGGTTT	58.852	50.000	0.00	0.00	0.00	3.27
724	857	3.659786	TGATCGTTGTGAGGTTTCGAAT	58.340	40.909	0.00	0.00	34.38	3.34
733	866	0.741221	AGGTTTCGAATGAGCGCTCC	60.741	55.000	33.23	17.73	0.00	4.70
738	871	2.890808	TCGAATGAGCGCTCCTTAAT	57.109	45.000	33.23	17.96	0.00	1.40
749	882	4.099573	AGCGCTCCTTAATTAGTTGCTCTA	59.900	41.667	2.64	0.00	0.00	2.43
827	960	2.284625	TGGTCGAGCCCATCCACT	60.285	61.111	12.85	0.00	36.04	4.00
1074	1223	1.398234	CCTTCCTCTTCCCCTCCCT	59.602	63.158	0.00	0.00	0.00	4.20
1096	1245	0.826256	TCCGCTGTGGTACTCACTGT	60.826	55.000	7.20	0.00	46.20	3.55
1242	1391	5.982890	TCCTAATTTCCTTGCTTCTTTGG	57.017	39.130	0.00	0.00	0.00	3.28
1662	1811	2.722094	AGCTTGCATACATTCCGGAAA	58.278	42.857	23.08	5.02	0.00	3.13
1665	1814	2.121291	TGCATACATTCCGGAAAGCA	57.879	45.000	23.08	21.33	0.00	3.91
1781	1930	7.379529	CACTTGTGAATATCAAAAGGTTGTGTC	59.620	37.037	13.36	0.00	44.16	3.67
2029	2178	7.443879	TGTGTTCAGTTCACATAGCTAAAATCA	59.556	33.333	0.00	0.00	40.26	2.57
2105	2254	8.333235	AGAACCAAATAACCATGGACAGTTATA	58.667	33.333	21.47	0.06	38.02	0.98
2183	2332	1.948145	CAGGAGCTCTGCCATTCAATC	59.052	52.381	14.64	0.00	36.60	2.67
2287	3503	4.975147	TGGACTATTCCCCACATCATAACT	59.025	41.667	0.00	0.00	42.01	2.24
2475	3692	1.258676	ACTGGTTCGTTCTCCCTCTC	58.741	55.000	0.00	0.00	0.00	3.20
2667	4080	7.428826	AGAAGTTCAATCACCAAAGTTTCATC	58.571	34.615	5.50	0.00	0.00	2.92
2740	4153	6.235231	AGTATTCTAGGATTCGCCAAAAGA	57.765	37.500	0.00	0.00	40.02	2.52
2744	4157	4.442706	TCTAGGATTCGCCAAAAGATCAC	58.557	43.478	0.00	0.00	40.02	3.06
2827	4240	3.700038	GTGAGGTATATATGTCCCCCTCG	59.300	52.174	9.21	0.00	41.08	4.63
3186	4724	1.888512	GTGGTGCATTCATTCAGTGGT	59.111	47.619	0.00	0.00	0.00	4.16
3195	4733	4.933505	TTCATTCAGTGGTGCAAATCAA	57.066	36.364	0.00	0.00	0.00	2.57
3196	4734	5.471556	TTCATTCAGTGGTGCAAATCAAT	57.528	34.783	0.00	0.00	0.00	2.57
3569	5108	7.882179	ACTGTACAAATTTACTGTTCCATTCC	58.118	34.615	0.00	0.00	32.01	3.01
3588	5127	8.994500	TCCATTCCCCGTAGCATATATAATTTA	58.006	33.333	0.00	0.00	0.00	1.40
4238	5783	9.113838	ACTAGCACTTTTTGTGGATATTAGATG	57.886	33.333	0.00	0.00	46.27	2.90
4465	6010	1.358787	TCCCCATCATTCAGTTGCCTT	59.641	47.619	0.00	0.00	0.00	4.35
4502	6047	7.813148	ACGACGTAGCTGCATAAATATCTAAAT	59.187	33.333	0.00	0.00	0.00	1.40
4546	6091	4.914983	TCTCACTCATCAAATTTGAGGCT	58.085	39.130	24.33	11.40	43.95	4.58
4551	6096	6.040729	TCACTCATCAAATTTGAGGCTTTGAA	59.959	34.615	24.33	8.38	43.95	2.69
4567	6112	4.156556	GCTTTGAACATGGAACTGCATCTA	59.843	41.667	0.00	0.00	0.00	1.98
4602	6152	3.360956	CGTCGTGTATCGTGTTTTTCGTT	60.361	43.478	0.00	0.00	40.80	3.85
4607	6157	4.667504	GTGTATCGTGTTTTTCGTTTGGTC	59.332	41.667	0.00	0.00	0.00	4.02
4642	6192	7.391554	TGCTTTGCAGAGAATGTTATAACTTCT	59.608	33.333	20.71	20.71	33.32	2.85
4726	6276	9.880064	CTTTCAGATACATGCTTGAGATAAATG	57.120	33.333	6.60	0.00	0.00	2.32
4751	6301	2.066262	CTTGACGTGAACGCTATTGGT	58.934	47.619	2.11	0.00	44.43	3.67
4752	6302	1.424403	TGACGTGAACGCTATTGGTG	58.576	50.000	2.11	0.00	44.43	4.17
4753	6303	1.269883	TGACGTGAACGCTATTGGTGT	60.270	47.619	2.11	0.00	44.43	4.16
4763	6313	5.673337	ACGCTATTGGTGTTATGCTATTG	57.327	39.130	0.00	0.00	34.69	1.90
4764	6314	4.024048	ACGCTATTGGTGTTATGCTATTGC	60.024	41.667	0.00	0.00	34.69	3.56
4841	6391	5.509716	TGATGCAAATCAGCTTATCCTTG	57.490	39.130	0.00	0.00	34.99	3.61
4882	6432	5.156355	ACACTAGATTACGTAACAACACCG	58.844	41.667	10.81	0.00	0.00	4.94
4888	6438	6.851609	AGATTACGTAACAACACCGTATACA	58.148	36.000	10.81	0.00	36.99	2.29
4889	6439	6.968904	AGATTACGTAACAACACCGTATACAG	59.031	38.462	10.81	0.00	36.99	2.74
4898	6448	5.010922	ACAACACCGTATACAGTCCACTTAA	59.989	40.000	3.32	0.00	0.00	1.85
4945	6526	0.179001	AACTAGCAAAAGGCCCGTGT	60.179	50.000	0.00	0.00	46.50	4.49
4956	6537	2.897846	CCCGTGTGTTGCAACGGA	60.898	61.111	25.44	12.15	41.17	4.69
4959	6540	1.433053	CCGTGTGTTGCAACGGAAGA	61.433	55.000	23.79	3.67	41.17	2.87
5016	6597	5.699458	TGCTGCATCATTGAGATACACTATG	59.301	40.000	0.00	0.00	34.43	2.23
5033	6614	9.761504	ATACACTATGACTCTCAATTTCATGAG	57.238	33.333	0.00	0.00	46.62	2.90
5075	6656	7.627585	AAACTCATGAACACATTTGAAATCG	57.372	32.000	0.00	0.00	0.00	3.34
5224	6806	8.549338	TTTTTAAACAATTTTCTTGAACCGGT	57.451	26.923	0.00	0.00	0.00	5.28
5286	6869	5.047021	TGGTGGAACAGTTTTGAAATTCACA	60.047	36.000	0.00	0.00	41.80	3.58

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
335	433	0.742505	CCACGAGAGGCACGGTTATA	59.257	55.000	0.00	0.00	34.93	0.98
337	435	1.180456	TTCCACGAGAGGCACGGTTA	61.180	55.000	0.00	0.00	34.93	2.85
431	538	1.225855	TTTGCTTTCGCGTGAGTCAT	58.774	45.000	5.77	0.00	39.65	3.06
438	545	1.298041	CACGGTTTTGCTTTCGCGT	60.298	52.632	5.77	0.00	39.65	6.01
543	671	2.420642	GTTTTCACCGGTCTTCCCTAC	58.579	52.381	2.59	0.00	0.00	3.18
637	769	0.321653	AGCGCTCCTTCGGATTTTGT	60.322	50.000	2.64	0.00	0.00	2.83
638	770	0.375106	GAGCGCTCCTTCGGATTTTG	59.625	55.000	27.22	0.00	0.00	2.44
642	774	0.036388	TTTTGAGCGCTCCTTCGGAT	60.036	50.000	33.23	0.00	0.00	4.18
645	777	0.110644	GTGTTTTGAGCGCTCCTTCG	60.111	55.000	33.23	0.00	0.00	3.79
661	793	1.298157	CCATTCGCCATGTGTCGTGT	61.298	55.000	0.00	0.00	0.00	4.49
663	795	2.398554	GCCATTCGCCATGTGTCGT	61.399	57.895	0.00	0.00	0.00	4.34
670	802	1.525535	GCTCTCAGCCATTCGCCAT	60.526	57.895	0.00	0.00	38.78	4.40
712	844	0.037326	AGCGCTCATTCGAAACCTCA	60.037	50.000	2.64	0.00	0.00	3.86
719	852	2.890808	ATTAAGGAGCGCTCATTCGA	57.109	45.000	37.27	27.06	35.12	3.71
724	857	2.936498	GCAACTAATTAAGGAGCGCTCA	59.064	45.455	36.27	18.43	0.00	4.26
1074	1223	0.601558	GTGAGTACCACAGCGGAAGA	59.398	55.000	8.95	0.00	45.03	2.87
1096	1245	3.041351	CAGGCGCACGCACAAGTA	61.041	61.111	17.69	0.00	44.11	2.24
1242	1391	1.079503	CAAGGCCGAGCTACAGAAAC	58.920	55.000	0.00	0.00	0.00	2.78
1298	1447	3.209410	GGGTCGATCTCTGCATCAAATT	58.791	45.455	0.00	0.00	0.00	1.82
1335	1484	2.425592	CAGCGGGAGTTGGTGTCA	59.574	61.111	0.00	0.00	37.43	3.58
1662	1811	0.330604	ACAATGACATGAGCCCTGCT	59.669	50.000	0.00	0.00	43.88	4.24
1665	1814	2.592102	AACACAATGACATGAGCCCT	57.408	45.000	0.00	0.00	0.00	5.19
1827	1976	7.284034	CCAAAAGCAAGAGTATCCATAGACAAT	59.716	37.037	0.00	0.00	33.66	2.71
2029	2178	1.532868	GCTTCAGTTGCACACTTCGAT	59.467	47.619	0.00	0.00	30.92	3.59
2079	2228	4.998051	ACTGTCCATGGTTATTTGGTTCT	58.002	39.130	12.58	0.00	34.48	3.01
2105	2254	7.837187	CCCCACCCCGTGAATAATAATAATAAT	59.163	37.037	0.00	0.00	35.23	1.28
2183	2332	6.678900	GCTCCTGTATTTAATTGGCACTCTTG	60.679	42.308	0.00	0.00	0.00	3.02
2445	3662	1.202557	ACGAACCAGTTTTCTGCGGTA	60.203	47.619	0.00	0.00	45.76	4.02
2475	3692	0.736636	ATGACATGCATTGTGGCTCG	59.263	50.000	0.00	0.00	39.18	5.03
2667	4080	7.439157	TGTGAATATTGACAAGGTCTTCAAG	57.561	36.000	5.18	0.00	35.25	3.02
2740	4153	8.743085	AGCACACTATATTGAATTTCAGTGAT	57.257	30.769	17.61	9.21	37.44	3.06
2817	4230	2.203182	AGGTGAACGAGGGGGACA	59.797	61.111	0.00	0.00	0.00	4.02
2818	4231	1.265454	ATCAGGTGAACGAGGGGGAC	61.265	60.000	0.00	0.00	0.00	4.46
2827	4240	7.856145	AAATGAGAAGACATATCAGGTGAAC	57.144	36.000	0.00	0.00	0.00	3.18
3436	4974	3.810941	ACTTCAAAACATGCAGCCAATTG	59.189	39.130	0.00	0.00	0.00	2.32
3437	4975	3.810941	CACTTCAAAACATGCAGCCAATT	59.189	39.130	0.00	0.00	0.00	2.32
3438	4976	3.181463	ACACTTCAAAACATGCAGCCAAT	60.181	39.130	0.00	0.00	0.00	3.16
3439	4977	2.168106	ACACTTCAAAACATGCAGCCAA	59.832	40.909	0.00	0.00	0.00	4.52
3440	4978	1.755959	ACACTTCAAAACATGCAGCCA	59.244	42.857	0.00	0.00	0.00	4.75
3441	4979	2.514205	ACACTTCAAAACATGCAGCC	57.486	45.000	0.00	0.00	0.00	4.85
3442	4980	4.114794	AGAAACACTTCAAAACATGCAGC	58.885	39.130	0.00	0.00	33.64	5.25
3620	5159	4.056050	GGGTATAATGACCTAACACGCAG	58.944	47.826	0.00	0.00	39.66	5.18
4238	5783	4.612033	GCACGTTTTAAGGTACATGTCACC	60.612	45.833	0.00	8.94	36.22	4.02
4354	5899	3.067180	CGCAGCATGATGTTCCCTTTTAT	59.933	43.478	13.32	0.00	39.69	1.40
4465	6010	0.166597	CTACGTCGTTAGTCGCCACA	59.833	55.000	1.78	0.00	39.67	4.17
4475	6020	5.529791	AGATATTTATGCAGCTACGTCGTT	58.470	37.500	1.78	0.00	0.00	3.85
4502	6047	3.390521	CCCACTGCTACCTCGGCA	61.391	66.667	0.00	0.00	38.10	5.69
4531	6076	6.128391	CCATGTTCAAAGCCTCAAATTTGATG	60.128	38.462	20.76	18.44	43.05	3.07
4546	6091	5.711506	ACATAGATGCAGTTCCATGTTCAAA	59.288	36.000	0.00	0.00	0.00	2.69
4551	6096	6.359804	ACATTACATAGATGCAGTTCCATGT	58.640	36.000	6.61	6.61	0.00	3.21
4602	6152	3.320256	TGCAAAGCATACATGTTGACCAA	59.680	39.130	2.30	0.00	31.71	3.67
4607	6157	4.690184	TCTCTGCAAAGCATACATGTTG	57.310	40.909	2.30	3.61	38.13	3.33
4642	6192	6.129035	CGTTGACAATATTCACGTACAGAACA	60.129	38.462	0.00	0.00	0.00	3.18
4726	6276	0.935196	AGCGTTCACGTCAAGAAACC	59.065	50.000	0.62	0.00	42.22	3.27
4841	6391	9.703892	ATCTAGTGTAGAATGAAGACATAATGC	57.296	33.333	0.00	0.00	38.50	3.56
4888	6438	8.328758	TGAACAATTCCTCATATTAAGTGGACT	58.671	33.333	0.00	0.00	0.00	3.85
4889	6439	8.506168	TGAACAATTCCTCATATTAAGTGGAC	57.494	34.615	0.00	0.00	0.00	4.02
4923	6473	0.388520	CGGGCCTTTTGCTAGTTTGC	60.389	55.000	0.84	0.00	40.92	3.68
4973	6554	4.789095	GCAAAATGCAATCATGGTCATC	57.211	40.909	0.00	0.00	44.26	2.92
5220	6802	4.332819	GTCCATTCTAGAAATGTTCACCGG	59.667	45.833	9.71	0.00	0.00	5.28
5224	6806	6.227522	TGTTCGTCCATTCTAGAAATGTTCA	58.772	36.000	9.71	0.00	0.00	3.18

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.