Multiple sequence alignment - TraesCS3B01G223000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G223000 chr3B 100.000 6445 0 0 1 6445 289591881 289598325 0.000000e+00 11902.0
1 TraesCS3B01G223000 chr3B 94.332 741 39 2 5229 5969 289627266 289628003 0.000000e+00 1133.0
2 TraesCS3B01G223000 chr3B 92.662 477 26 4 5978 6445 289628500 289628976 0.000000e+00 678.0
3 TraesCS3B01G223000 chr3B 98.864 176 1 1 3033 3207 765006408 765006583 4.850000e-81 313.0
4 TraesCS3B01G223000 chr3B 94.382 89 5 0 5826 5914 289627948 289627860 3.130000e-28 137.0
5 TraesCS3B01G223000 chr3B 97.959 49 1 0 5287 5335 289597133 289597181 1.150000e-12 86.1
6 TraesCS3B01G223000 chr3B 97.959 49 1 0 5253 5301 289597167 289597215 1.150000e-12 86.1
7 TraesCS3B01G223000 chr3B 82.609 92 12 4 5826 5917 700365678 700365765 1.930000e-10 78.7
8 TraesCS3B01G223000 chr3D 97.754 2093 41 4 3212 5301 202498429 202500518 0.000000e+00 3600.0
9 TraesCS3B01G223000 chr3D 97.300 926 18 5 1231 2153 202496409 202497330 0.000000e+00 1565.0
10 TraesCS3B01G223000 chr3D 92.263 685 40 3 5287 5969 202500470 202501143 0.000000e+00 959.0
11 TraesCS3B01G223000 chr3D 92.925 523 26 5 280 800 124531490 124532003 0.000000e+00 750.0
12 TraesCS3B01G223000 chr3D 92.678 519 21 4 1 503 124529936 124530453 0.000000e+00 732.0
13 TraesCS3B01G223000 chr3D 93.908 476 21 4 5978 6445 202501613 202502088 0.000000e+00 712.0
14 TraesCS3B01G223000 chr3D 96.259 294 5 1 883 1170 202495775 202496068 1.630000e-130 477.0
15 TraesCS3B01G223000 chr3D 94.382 89 5 0 5826 5914 202501088 202501000 3.130000e-28 137.0
16 TraesCS3B01G223000 chr3D 96.429 56 2 0 5068 5123 202500233 202500288 6.880000e-15 93.5
17 TraesCS3B01G223000 chr3A 96.493 1283 31 5 884 2156 256869889 256868611 0.000000e+00 2108.0
18 TraesCS3B01G223000 chr3A 97.436 1014 22 3 3285 4297 256868015 256867005 0.000000e+00 1725.0
19 TraesCS3B01G223000 chr3A 97.568 987 22 2 4321 5305 256867011 256866025 0.000000e+00 1688.0
20 TraesCS3B01G223000 chr3A 93.469 689 24 7 5287 5969 256866077 256865404 0.000000e+00 1003.0
21 TraesCS3B01G223000 chr3A 88.105 723 62 10 79 791 636990730 636991438 0.000000e+00 837.0
22 TraesCS3B01G223000 chr3A 90.517 464 33 5 5981 6436 256863042 256862582 2.570000e-168 603.0
23 TraesCS3B01G223000 chr3A 79.866 298 34 12 6139 6427 721612102 721612382 1.830000e-45 195.0
24 TraesCS3B01G223000 chr3A 96.429 56 2 0 5068 5123 256866314 256866259 6.880000e-15 93.5
25 TraesCS3B01G223000 chr7B 99.417 857 5 0 2153 3009 226903775 226902919 0.000000e+00 1555.0
26 TraesCS3B01G223000 chr7B 95.539 807 17 8 1 791 99661798 99662601 0.000000e+00 1273.0
27 TraesCS3B01G223000 chr7B 89.706 340 31 4 2153 2490 505953166 505952829 1.280000e-116 431.0
28 TraesCS3B01G223000 chr7B 99.490 196 0 1 3018 3213 246011368 246011562 7.950000e-94 355.0
29 TraesCS3B01G223000 chr7B 99.485 194 0 1 3018 3211 446162677 446162485 1.030000e-92 351.0
30 TraesCS3B01G223000 chr7B 87.912 91 7 4 5825 5914 632792240 632792153 3.180000e-18 104.0
31 TraesCS3B01G223000 chr7A 99.302 860 6 0 2153 3012 238581096 238581955 0.000000e+00 1555.0
32 TraesCS3B01G223000 chr7A 85.784 816 76 12 1 792 733083504 733082705 0.000000e+00 828.0
33 TraesCS3B01G223000 chr7A 88.889 90 4 4 5826 5914 728022358 728022274 8.840000e-19 106.0
34 TraesCS3B01G223000 chr5B 97.086 858 17 2 2153 3010 576871808 576872657 0.000000e+00 1439.0
35 TraesCS3B01G223000 chr5B 97.990 199 2 1 3007 3205 471854201 471854397 1.720000e-90 344.0
36 TraesCS3B01G223000 chr5B 95.161 186 8 1 3037 3222 264932372 264932556 6.320000e-75 292.0
37 TraesCS3B01G223000 chr4B 95.930 860 13 2 2153 3012 180992953 180992116 0.000000e+00 1375.0
38 TraesCS3B01G223000 chr7D 91.958 858 56 5 2153 3000 64550983 64551837 0.000000e+00 1190.0
39 TraesCS3B01G223000 chr7D 100.000 28 0 0 791 818 13392959 13392932 1.200000e-02 52.8
40 TraesCS3B01G223000 chr5D 90.311 867 74 8 2153 3013 160067265 160068127 0.000000e+00 1127.0
41 TraesCS3B01G223000 chr5D 88.430 847 67 16 2153 2987 45631375 45632202 0.000000e+00 992.0
42 TraesCS3B01G223000 chr6A 88.009 859 70 18 2153 3002 557927439 557928273 0.000000e+00 985.0
43 TraesCS3B01G223000 chr6A 88.269 699 66 9 98 795 35569647 35568964 0.000000e+00 822.0
44 TraesCS3B01G223000 chr6A 100.000 192 0 0 3016 3207 70420929 70421120 7.950000e-94 355.0
45 TraesCS3B01G223000 chr5A 86.211 863 73 23 2153 3002 9826342 9827171 0.000000e+00 893.0
46 TraesCS3B01G223000 chr5A 85.600 875 72 22 2153 3014 708172095 708172928 0.000000e+00 869.0
47 TraesCS3B01G223000 chr5A 90.625 384 34 2 2301 2682 260334157 260333774 5.770000e-140 508.0
48 TraesCS3B01G223000 chr5A 89.630 135 14 0 3073 3207 36817206 36817340 8.590000e-39 172.0
49 TraesCS3B01G223000 chr1A 88.746 702 63 9 98 798 45779060 45778374 0.000000e+00 845.0
50 TraesCS3B01G223000 chr1A 100.000 28 0 0 791 818 146635794 146635767 1.200000e-02 52.8
51 TraesCS3B01G223000 chr2A 88.682 698 60 14 98 792 510991476 510990795 0.000000e+00 833.0
52 TraesCS3B01G223000 chr2A 87.879 726 65 16 79 795 513283732 513283021 0.000000e+00 832.0
53 TraesCS3B01G223000 chr2A 100.000 192 0 0 3016 3207 569281853 569281662 7.950000e-94 355.0
54 TraesCS3B01G223000 chr2A 99.485 194 1 0 3014 3207 644083309 644083502 2.860000e-93 353.0
55 TraesCS3B01G223000 chr2B 87.607 702 67 17 99 795 11899256 11898570 0.000000e+00 797.0
56 TraesCS3B01G223000 chr2B 100.000 30 0 0 791 820 43221350 43221321 1.000000e-03 56.5
57 TraesCS3B01G223000 chr2B 100.000 29 0 0 791 819 453334331 453334359 3.000000e-03 54.7
58 TraesCS3B01G223000 chr6B 100.000 191 0 0 3017 3207 643217265 643217455 2.860000e-93 353.0
59 TraesCS3B01G223000 chr1B 100.000 191 0 0 3014 3204 664059138 664059328 2.860000e-93 353.0
60 TraesCS3B01G223000 chr1B 96.209 211 6 2 3001 3210 15236213 15236004 1.720000e-90 344.0
61 TraesCS3B01G223000 chr1B 93.548 62 4 0 6043 6104 439435904 439435965 6.880000e-15 93.5
62 TraesCS3B01G223000 chr1B 100.000 29 0 0 791 819 469166190 469166218 3.000000e-03 54.7
63 TraesCS3B01G223000 chr1B 96.875 32 0 1 791 822 604309090 604309120 1.200000e-02 52.8
64 TraesCS3B01G223000 chrUn 85.294 136 14 4 5974 6104 295889635 295889501 1.130000e-27 135.0
65 TraesCS3B01G223000 chrUn 100.000 28 0 0 791 818 48669810 48669783 1.200000e-02 52.8
66 TraesCS3B01G223000 chr6D 88.889 99 7 4 5824 5919 445778869 445778966 1.140000e-22 119.0
67 TraesCS3B01G223000 chr6D 86.735 98 7 3 5825 5921 60049530 60049622 3.180000e-18 104.0
68 TraesCS3B01G223000 chr6D 100.000 28 0 0 791 818 5103552 5103525 1.200000e-02 52.8
69 TraesCS3B01G223000 chr2D 86.275 102 7 4 5814 5914 378043083 378043178 3.180000e-18 104.0
70 TraesCS3B01G223000 chr2D 100.000 28 0 0 791 818 624918254 624918281 1.200000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G223000 chr3B 289591881 289598325 6444 False 4024.733333 11902 98.639333 1 6445 3 chr3B.!!$F3 6444
1 TraesCS3B01G223000 chr3B 289627266 289628976 1710 False 905.500000 1133 93.497000 5229 6445 2 chr3B.!!$F4 1216
2 TraesCS3B01G223000 chr3D 202495775 202502088 6313 False 1234.416667 3600 95.652167 883 6445 6 chr3D.!!$F2 5562
3 TraesCS3B01G223000 chr3D 124529936 124532003 2067 False 741.000000 750 92.801500 1 800 2 chr3D.!!$F1 799
4 TraesCS3B01G223000 chr3A 256862582 256869889 7307 True 1203.416667 2108 95.318667 884 6436 6 chr3A.!!$R1 5552
5 TraesCS3B01G223000 chr3A 636990730 636991438 708 False 837.000000 837 88.105000 79 791 1 chr3A.!!$F1 712
6 TraesCS3B01G223000 chr7B 226902919 226903775 856 True 1555.000000 1555 99.417000 2153 3009 1 chr7B.!!$R1 856
7 TraesCS3B01G223000 chr7B 99661798 99662601 803 False 1273.000000 1273 95.539000 1 791 1 chr7B.!!$F1 790
8 TraesCS3B01G223000 chr7A 238581096 238581955 859 False 1555.000000 1555 99.302000 2153 3012 1 chr7A.!!$F1 859
9 TraesCS3B01G223000 chr7A 733082705 733083504 799 True 828.000000 828 85.784000 1 792 1 chr7A.!!$R2 791
10 TraesCS3B01G223000 chr5B 576871808 576872657 849 False 1439.000000 1439 97.086000 2153 3010 1 chr5B.!!$F3 857
11 TraesCS3B01G223000 chr4B 180992116 180992953 837 True 1375.000000 1375 95.930000 2153 3012 1 chr4B.!!$R1 859
12 TraesCS3B01G223000 chr7D 64550983 64551837 854 False 1190.000000 1190 91.958000 2153 3000 1 chr7D.!!$F1 847
13 TraesCS3B01G223000 chr5D 160067265 160068127 862 False 1127.000000 1127 90.311000 2153 3013 1 chr5D.!!$F2 860
14 TraesCS3B01G223000 chr5D 45631375 45632202 827 False 992.000000 992 88.430000 2153 2987 1 chr5D.!!$F1 834
15 TraesCS3B01G223000 chr6A 557927439 557928273 834 False 985.000000 985 88.009000 2153 3002 1 chr6A.!!$F2 849
16 TraesCS3B01G223000 chr6A 35568964 35569647 683 True 822.000000 822 88.269000 98 795 1 chr6A.!!$R1 697
17 TraesCS3B01G223000 chr5A 9826342 9827171 829 False 893.000000 893 86.211000 2153 3002 1 chr5A.!!$F1 849
18 TraesCS3B01G223000 chr5A 708172095 708172928 833 False 869.000000 869 85.600000 2153 3014 1 chr5A.!!$F3 861
19 TraesCS3B01G223000 chr1A 45778374 45779060 686 True 845.000000 845 88.746000 98 798 1 chr1A.!!$R1 700
20 TraesCS3B01G223000 chr2A 510990795 510991476 681 True 833.000000 833 88.682000 98 792 1 chr2A.!!$R1 694
21 TraesCS3B01G223000 chr2A 513283021 513283732 711 True 832.000000 832 87.879000 79 795 1 chr2A.!!$R2 716
22 TraesCS3B01G223000 chr2B 11898570 11899256 686 True 797.000000 797 87.607000 99 795 1 chr2B.!!$R1 696

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
823 988 0.178903 TATAGGAGCTCCCGGCCATT 60.179 55.0 29.54 11.45 43.05 3.16 F
832 997 0.250295 TCCCGGCCATTTGATCGATC 60.250 55.0 18.72 18.72 0.00 3.69 F
840 1005 0.389391 ATTTGATCGATCGGCTCCGT 59.611 50.0 20.03 0.00 40.74 4.69 F
842 1007 0.591659 TTGATCGATCGGCTCCGTAG 59.408 55.0 20.03 1.73 40.74 3.51 F
855 1020 0.666274 TCCGTAGCAGAACACAAGCG 60.666 55.0 0.00 0.00 0.00 4.68 F
1759 2210 0.749649 GGTGCACTCTCGATCATCCT 59.250 55.0 17.98 0.00 0.00 3.24 F
3172 4503 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.0 0.00 0.00 44.78 4.85 F
3185 4516 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.0 0.00 0.00 38.40 4.00 F
3186 4517 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.0 0.00 0.00 41.70 3.66 F
3213 4544 0.954452 GCTCCCCTTCAAACACAGTG 59.046 55.0 0.00 0.00 0.00 3.66 F
3591 4924 2.709125 TTCGTCGTGCTCTTGGTGGG 62.709 60.0 0.00 0.00 0.00 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2089 2544 2.290514 CCTCCTCATTGCTTCACAAGGA 60.291 50.000 0.00 0.00 46.24 3.36 R
2530 3550 3.818787 GCTCCCTTGTGGCATGCG 61.819 66.667 12.44 0.00 0.00 4.73 R
3022 4353 0.763986 ATGCACCAGGTTGCCCTTTT 60.764 50.000 10.46 0.00 42.25 2.27 R
3028 4359 0.962356 AGCTACATGCACCAGGTTGC 60.962 55.000 8.03 8.03 44.17 4.17 R
3059 4390 2.125225 GACCCTTCCCTGGACCCT 59.875 66.667 0.00 0.00 0.00 4.34 R
3166 4497 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35 R
5161 6495 2.722094 TGCCACAATCCCATCTACAAC 58.278 47.619 0.00 0.00 0.00 3.32 R
5164 6498 2.936202 ACATGCCACAATCCCATCTAC 58.064 47.619 0.00 0.00 0.00 2.59 R
5305 6673 5.441718 AAAGGTTATTCAGATCCTGCTGA 57.558 39.130 0.00 0.00 42.81 4.26 R
5306 6674 6.521151 AAAAAGGTTATTCAGATCCTGCTG 57.479 37.500 0.00 0.00 37.24 4.41 R
5706 7077 1.884579 ACAGACGGACATAACACGACT 59.115 47.619 0.00 0.00 33.34 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
322 362 8.743085 ACATTCTTGTGATATAAGCTGAACAT 57.257 30.769 0.00 0.00 33.85 2.71
503 657 9.631639 GGAATGTCGAACAATTTTTAAAACAAG 57.368 29.630 0.00 0.00 0.00 3.16
693 858 2.122901 TTTGCCTGCCCCTGCTTT 60.123 55.556 0.00 0.00 38.71 3.51
795 960 1.451387 AAATAGGGTTCGCCGCCTG 60.451 57.895 0.00 0.00 38.45 4.85
808 973 3.038417 GCCTGCAGCGCCGTATAG 61.038 66.667 8.66 0.00 0.00 1.31
809 974 2.356313 CCTGCAGCGCCGTATAGG 60.356 66.667 8.66 1.07 44.97 2.57
810 975 2.728180 CTGCAGCGCCGTATAGGA 59.272 61.111 2.29 0.00 45.00 2.94
811 976 1.372251 CTGCAGCGCCGTATAGGAG 60.372 63.158 2.29 0.00 45.00 3.69
816 981 2.963371 CGCCGTATAGGAGCTCCC 59.037 66.667 29.54 12.87 45.00 4.30
817 982 2.963371 GCCGTATAGGAGCTCCCG 59.037 66.667 29.54 23.51 45.00 5.14
818 983 2.637383 GCCGTATAGGAGCTCCCGG 61.637 68.421 32.14 32.14 45.00 5.73
819 984 2.637383 CCGTATAGGAGCTCCCGGC 61.637 68.421 27.99 16.67 45.00 6.13
820 985 2.637383 CGTATAGGAGCTCCCGGCC 61.637 68.421 29.54 13.95 43.05 6.13
821 986 1.533273 GTATAGGAGCTCCCGGCCA 60.533 63.158 29.54 9.96 43.05 5.36
822 987 0.905337 GTATAGGAGCTCCCGGCCAT 60.905 60.000 29.54 16.14 43.05 4.40
823 988 0.178903 TATAGGAGCTCCCGGCCATT 60.179 55.000 29.54 11.45 43.05 3.16
824 989 1.062488 ATAGGAGCTCCCGGCCATTT 61.062 55.000 29.54 10.66 43.05 2.32
825 990 1.983119 TAGGAGCTCCCGGCCATTTG 61.983 60.000 29.54 0.00 43.05 2.32
826 991 2.272146 GAGCTCCCGGCCATTTGA 59.728 61.111 2.24 0.00 43.05 2.69
827 992 1.152881 GAGCTCCCGGCCATTTGAT 60.153 57.895 2.24 0.00 43.05 2.57
828 993 1.152881 AGCTCCCGGCCATTTGATC 60.153 57.895 2.24 0.00 43.05 2.92
829 994 2.546494 GCTCCCGGCCATTTGATCG 61.546 63.158 2.24 0.00 34.27 3.69
830 995 1.146041 CTCCCGGCCATTTGATCGA 59.854 57.895 2.24 0.00 0.00 3.59
831 996 0.250467 CTCCCGGCCATTTGATCGAT 60.250 55.000 2.24 0.00 0.00 3.59
832 997 0.250295 TCCCGGCCATTTGATCGATC 60.250 55.000 18.72 18.72 0.00 3.69
833 998 1.568612 CCCGGCCATTTGATCGATCG 61.569 60.000 20.03 9.36 0.00 3.69
834 999 1.568612 CCGGCCATTTGATCGATCGG 61.569 60.000 20.03 15.43 0.00 4.18
835 1000 1.576421 GGCCATTTGATCGATCGGC 59.424 57.895 25.37 25.37 38.85 5.54
836 1001 0.886490 GGCCATTTGATCGATCGGCT 60.886 55.000 29.29 12.87 39.53 5.52
837 1002 0.514691 GCCATTTGATCGATCGGCTC 59.485 55.000 25.81 12.90 36.58 4.70
838 1003 1.151668 CCATTTGATCGATCGGCTCC 58.848 55.000 20.03 2.81 0.00 4.70
839 1004 0.786581 CATTTGATCGATCGGCTCCG 59.213 55.000 20.03 1.14 41.35 4.63
840 1005 0.389391 ATTTGATCGATCGGCTCCGT 59.611 50.000 20.03 0.00 40.74 4.69
841 1006 1.026584 TTTGATCGATCGGCTCCGTA 58.973 50.000 20.03 0.00 40.74 4.02
842 1007 0.591659 TTGATCGATCGGCTCCGTAG 59.408 55.000 20.03 1.73 40.74 3.51
854 1019 1.071605 CTCCGTAGCAGAACACAAGC 58.928 55.000 0.00 0.00 0.00 4.01
855 1020 0.666274 TCCGTAGCAGAACACAAGCG 60.666 55.000 0.00 0.00 0.00 4.68
856 1021 0.944311 CCGTAGCAGAACACAAGCGT 60.944 55.000 0.00 0.00 0.00 5.07
857 1022 0.859232 CGTAGCAGAACACAAGCGTT 59.141 50.000 0.00 0.00 0.00 4.84
858 1023 1.397190 CGTAGCAGAACACAAGCGTTG 60.397 52.381 0.00 0.00 0.00 4.10
859 1024 1.597663 GTAGCAGAACACAAGCGTTGT 59.402 47.619 0.00 0.00 46.75 3.32
873 1038 3.552604 GCGTTGTGCTTGGAGATAAAA 57.447 42.857 0.00 0.00 41.73 1.52
874 1039 4.096732 GCGTTGTGCTTGGAGATAAAAT 57.903 40.909 0.00 0.00 41.73 1.82
875 1040 5.229921 GCGTTGTGCTTGGAGATAAAATA 57.770 39.130 0.00 0.00 41.73 1.40
876 1041 5.821204 GCGTTGTGCTTGGAGATAAAATAT 58.179 37.500 0.00 0.00 41.73 1.28
877 1042 5.682862 GCGTTGTGCTTGGAGATAAAATATG 59.317 40.000 0.00 0.00 41.73 1.78
878 1043 6.458206 GCGTTGTGCTTGGAGATAAAATATGA 60.458 38.462 0.00 0.00 41.73 2.15
879 1044 7.128331 CGTTGTGCTTGGAGATAAAATATGAG 58.872 38.462 0.00 0.00 0.00 2.90
880 1045 7.011389 CGTTGTGCTTGGAGATAAAATATGAGA 59.989 37.037 0.00 0.00 0.00 3.27
881 1046 8.677300 GTTGTGCTTGGAGATAAAATATGAGAA 58.323 33.333 0.00 0.00 0.00 2.87
882 1047 8.442632 TGTGCTTGGAGATAAAATATGAGAAG 57.557 34.615 0.00 0.00 0.00 2.85
1362 1813 1.759445 CACTCCAACTCCGATCCATCT 59.241 52.381 0.00 0.00 0.00 2.90
1395 1846 2.589157 CCCGCCACCACAACCTCTA 61.589 63.158 0.00 0.00 0.00 2.43
1434 1885 2.516923 GACCTCGTCAATAGTGTCACG 58.483 52.381 0.00 0.00 32.09 4.35
1645 2096 2.041922 AGCGGGACCATAGGCTCA 60.042 61.111 0.00 0.00 0.00 4.26
1759 2210 0.749649 GGTGCACTCTCGATCATCCT 59.250 55.000 17.98 0.00 0.00 3.24
1976 2431 5.220710 AGATAGCTGTTGTGAACAAGAGT 57.779 39.130 18.29 9.99 45.65 3.24
2089 2544 4.175962 TGAGTTCCTGGAAAGGATTAGGT 58.824 43.478 11.40 0.00 37.87 3.08
2742 3768 1.298014 GCCTGCTGACTGCTAGGTT 59.702 57.895 17.60 0.00 43.37 3.50
3017 4348 6.119536 ACATCCAAAGACAGTGTTAGTCAAA 58.880 36.000 0.00 0.00 38.46 2.69
3018 4349 6.601613 ACATCCAAAGACAGTGTTAGTCAAAA 59.398 34.615 0.00 0.00 38.46 2.44
3019 4350 7.122055 ACATCCAAAGACAGTGTTAGTCAAAAA 59.878 33.333 0.00 0.00 38.46 1.94
3044 4375 4.413928 GGCAACCTGGTGCATGTA 57.586 55.556 18.44 0.00 46.81 2.29
3045 4376 2.183409 GGCAACCTGGTGCATGTAG 58.817 57.895 18.44 0.00 46.81 2.74
3046 4377 1.508088 GCAACCTGGTGCATGTAGC 59.492 57.895 6.00 6.00 44.29 3.58
3048 4379 1.089920 CAACCTGGTGCATGTAGCTC 58.910 55.000 14.15 0.00 45.94 4.09
3055 4386 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
3056 4387 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
3057 4388 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
3060 4391 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
3072 4403 4.785453 GCGCAGGGTCCAGGGAAG 62.785 72.222 0.30 0.00 0.00 3.46
3073 4404 4.101448 CGCAGGGTCCAGGGAAGG 62.101 72.222 0.00 0.00 0.00 3.46
3074 4405 3.732849 GCAGGGTCCAGGGAAGGG 61.733 72.222 0.00 0.00 0.00 3.95
3075 4406 2.204151 CAGGGTCCAGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
3076 4407 2.125225 AGGGTCCAGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
3077 4408 3.015753 GGGTCCAGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
3078 4409 3.400054 GGTCCAGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
3079 4410 2.284405 GTCCAGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
3080 4411 2.284405 TCCAGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
3081 4412 3.400054 CCAGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
3082 4413 2.606519 CAGGGAAGGGTCCGACCA 60.607 66.667 19.43 0.00 46.04 4.02
3083 4414 2.606826 AGGGAAGGGTCCGACCAC 60.607 66.667 19.43 8.70 46.04 4.16
3084 4415 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
3085 4416 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
3086 4417 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
3087 4418 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
3088 4419 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
3089 4420 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
3090 4421 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
3100 4431 4.996788 ACCACTTTGGGTCTATAGTACG 57.003 45.455 0.00 0.00 43.37 3.67
3101 4432 3.131755 ACCACTTTGGGTCTATAGTACGC 59.868 47.826 0.00 6.13 43.37 4.42
3102 4433 3.131577 CCACTTTGGGTCTATAGTACGCA 59.868 47.826 13.98 13.98 37.94 5.24
3103 4434 4.360563 CACTTTGGGTCTATAGTACGCAG 58.639 47.826 16.00 11.29 40.36 5.18
3104 4435 3.181478 ACTTTGGGTCTATAGTACGCAGC 60.181 47.826 16.00 2.07 40.36 5.25
3105 4436 1.325355 TGGGTCTATAGTACGCAGCC 58.675 55.000 13.98 8.23 35.18 4.85
3106 4437 1.133575 TGGGTCTATAGTACGCAGCCT 60.134 52.381 13.98 0.00 35.18 4.58
3107 4438 1.962100 GGGTCTATAGTACGCAGCCTT 59.038 52.381 0.00 0.00 0.00 4.35
3108 4439 2.364647 GGGTCTATAGTACGCAGCCTTT 59.635 50.000 0.00 0.00 0.00 3.11
3109 4440 3.552478 GGGTCTATAGTACGCAGCCTTTC 60.552 52.174 0.00 0.00 0.00 2.62
3110 4441 3.552478 GGTCTATAGTACGCAGCCTTTCC 60.552 52.174 0.00 0.00 0.00 3.13
3111 4442 2.626743 TCTATAGTACGCAGCCTTTCCC 59.373 50.000 0.00 0.00 0.00 3.97
3112 4443 1.497161 ATAGTACGCAGCCTTTCCCT 58.503 50.000 0.00 0.00 0.00 4.20
3113 4444 2.148446 TAGTACGCAGCCTTTCCCTA 57.852 50.000 0.00 0.00 0.00 3.53
3114 4445 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18
3115 4446 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
3116 4447 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
3117 4448 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
3118 4449 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
3119 4450 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
3120 4451 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
3121 4452 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
3122 4453 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
3123 4454 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
3124 4455 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
3125 4456 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
3126 4457 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
3138 4469 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
3139 4470 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
3140 4471 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
3141 4472 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
3142 4473 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
3143 4474 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
3144 4475 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
3145 4476 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
3146 4477 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
3147 4478 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
3148 4479 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
3149 4480 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
3150 4481 1.566703 TGTTTCCAGGACTTGAACCCA 59.433 47.619 0.00 0.00 0.00 4.51
3151 4482 2.176798 TGTTTCCAGGACTTGAACCCAT 59.823 45.455 0.00 0.00 0.00 4.00
3152 4483 2.558359 GTTTCCAGGACTTGAACCCATG 59.442 50.000 0.00 0.00 0.00 3.66
3153 4484 1.741028 TCCAGGACTTGAACCCATGA 58.259 50.000 0.00 0.00 0.00 3.07
3154 4485 1.351017 TCCAGGACTTGAACCCATGAC 59.649 52.381 0.00 0.00 0.00 3.06
3155 4486 1.614317 CCAGGACTTGAACCCATGACC 60.614 57.143 0.00 0.00 34.29 4.02
3156 4487 1.352352 CAGGACTTGAACCCATGACCT 59.648 52.381 0.00 0.00 40.96 3.85
3157 4488 1.630878 AGGACTTGAACCCATGACCTC 59.369 52.381 0.00 0.00 37.82 3.85
3158 4489 1.351017 GGACTTGAACCCATGACCTCA 59.649 52.381 0.00 0.00 32.45 3.86
3159 4490 2.025887 GGACTTGAACCCATGACCTCAT 60.026 50.000 0.00 0.00 36.96 2.90
3171 4502 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
3172 4503 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
3173 4504 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
3174 4505 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
3175 4506 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
3176 4507 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
3177 4508 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
3178 4509 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
3179 4510 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
3180 4511 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
3181 4512 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
3182 4513 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
3183 4514 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
3184 4515 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
3185 4516 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
3186 4517 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
3190 4521 2.870372 CAGCTTTACCACTGCGCC 59.130 61.111 4.18 0.00 0.00 6.53
3191 4522 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
3192 4523 1.228124 AGCTTTACCACTGCGCCAA 60.228 52.632 4.18 0.00 0.00 4.52
3193 4524 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61
3194 4525 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61
3195 4526 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35
3196 4527 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58
3197 4528 3.605749 TACCACTGCGCCAAGGCTC 62.606 63.158 4.18 1.20 39.32 4.70
3210 4541 2.240510 AGGCTCCCCTTCAAACACA 58.759 52.632 0.00 0.00 38.74 3.72
3213 4544 0.954452 GCTCCCCTTCAAACACAGTG 59.046 55.000 0.00 0.00 0.00 3.66
3475 4808 4.116238 GGAATCTTCCTTCTGACGACATC 58.884 47.826 1.57 0.00 44.11 3.06
3591 4924 2.709125 TTCGTCGTGCTCTTGGTGGG 62.709 60.000 0.00 0.00 0.00 4.61
3685 5018 3.190953 ACGTAGCACTGTCTAAAGTCCTC 59.809 47.826 0.00 0.00 0.00 3.71
3823 5156 3.291584 TCCCTCTGCTATATATGCTCCG 58.708 50.000 0.00 0.00 0.00 4.63
4181 5514 6.888105 TCCACTAGCTTGTTTGATCATCATA 58.112 36.000 0.00 0.00 0.00 2.15
4356 5689 6.645415 ACACCTAGTTCACTTTCTCATTAACG 59.355 38.462 0.00 0.00 0.00 3.18
4453 5786 5.073554 TCAGCTGATTAATGGTGGGTATGAT 59.926 40.000 13.74 0.00 33.13 2.45
4742 6075 3.407540 TGATATCTCCCATCCTCCCTCTT 59.592 47.826 3.98 0.00 0.00 2.85
4743 6076 2.906169 ATCTCCCATCCTCCCTCTTT 57.094 50.000 0.00 0.00 0.00 2.52
4792 6125 7.148239 CGTGAGGGTCTAATTTTAGCATTTTCT 60.148 37.037 0.00 0.00 0.00 2.52
4923 6256 8.844244 CAGGAGAATGGGTATTTCTTATCTTTG 58.156 37.037 0.00 0.00 0.00 2.77
4994 6327 6.321821 AGGTGGTGTAAATATTGAAGCCTA 57.678 37.500 0.00 0.00 0.00 3.93
5161 6495 3.945285 ACCTTGTACTGAGTTGTTTGTGG 59.055 43.478 0.00 0.00 0.00 4.17
5164 6498 4.955925 TGTACTGAGTTGTTTGTGGTTG 57.044 40.909 0.00 0.00 0.00 3.77
5279 6647 9.474313 AACCTTTTTAATATGTATTCAGCAGGA 57.526 29.630 0.00 0.00 0.00 3.86
5280 6648 9.646522 ACCTTTTTAATATGTATTCAGCAGGAT 57.353 29.630 0.00 0.00 0.00 3.24
5292 6660 5.441718 TTCAGCAGGATCTGAATAACCTT 57.558 39.130 2.43 0.00 45.21 3.50
5293 6661 5.441718 TCAGCAGGATCTGAATAACCTTT 57.558 39.130 0.00 0.00 39.89 3.11
5294 6662 5.819991 TCAGCAGGATCTGAATAACCTTTT 58.180 37.500 0.00 0.00 39.89 2.27
5295 6663 6.248433 TCAGCAGGATCTGAATAACCTTTTT 58.752 36.000 0.00 0.00 39.89 1.94
5296 6664 7.402054 TCAGCAGGATCTGAATAACCTTTTTA 58.598 34.615 0.00 0.00 39.89 1.52
5297 6665 7.888021 TCAGCAGGATCTGAATAACCTTTTTAA 59.112 33.333 0.00 0.00 39.89 1.52
5298 6666 8.689972 CAGCAGGATCTGAATAACCTTTTTAAT 58.310 33.333 0.00 0.00 36.19 1.40
5299 6667 9.920946 AGCAGGATCTGAATAACCTTTTTAATA 57.079 29.630 0.00 0.00 32.44 0.98
5476 6844 6.017440 GGCGCATCATAGGTATAAACAAAAGA 60.017 38.462 10.83 0.00 0.00 2.52
5494 6862 3.228188 AGAAATGTGCAAACTGGAGGA 57.772 42.857 0.00 0.00 0.00 3.71
5511 6879 8.147244 ACTGGAGGAAAGTGTATGTACTTAAT 57.853 34.615 0.00 0.00 39.86 1.40
5512 6880 9.263446 ACTGGAGGAAAGTGTATGTACTTAATA 57.737 33.333 0.00 0.00 39.86 0.98
5513 6881 9.751542 CTGGAGGAAAGTGTATGTACTTAATAG 57.248 37.037 0.00 0.00 39.86 1.73
5676 7047 3.127533 GCGCAGAAAGCCATCGGT 61.128 61.111 0.30 0.00 41.38 4.69
5853 7226 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
5925 7310 7.364497 GGGACGGAGGGAGTATATAATTTTAGG 60.364 44.444 0.00 0.00 0.00 2.69
5969 7354 0.108186 CCTGCCTGTGAGCGTTATGA 60.108 55.000 0.00 0.00 34.65 2.15
5970 7355 1.675714 CCTGCCTGTGAGCGTTATGAA 60.676 52.381 0.00 0.00 34.65 2.57
5971 7356 2.076100 CTGCCTGTGAGCGTTATGAAA 58.924 47.619 0.00 0.00 34.65 2.69
5972 7357 2.483877 CTGCCTGTGAGCGTTATGAAAA 59.516 45.455 0.00 0.00 34.65 2.29
5973 7358 3.081061 TGCCTGTGAGCGTTATGAAAAT 58.919 40.909 0.00 0.00 34.65 1.82
5974 7359 3.119884 TGCCTGTGAGCGTTATGAAAATG 60.120 43.478 0.00 0.00 34.65 2.32
5975 7360 3.119849 GCCTGTGAGCGTTATGAAAATGT 60.120 43.478 0.00 0.00 0.00 2.71
5976 7361 4.651994 CCTGTGAGCGTTATGAAAATGTC 58.348 43.478 0.00 0.00 0.00 3.06
5979 9725 4.699735 TGTGAGCGTTATGAAAATGTCCAT 59.300 37.500 0.00 0.00 0.00 3.41
6169 9919 2.923121 TCTCATGTGCCCATAAGAAGC 58.077 47.619 0.00 0.00 0.00 3.86
6347 10098 0.247736 GCCATGAACTGACGACTCCT 59.752 55.000 0.00 0.00 0.00 3.69
6394 10145 8.141909 GGTAAAAGAAAGGCATATTTATGACCC 58.858 37.037 0.00 0.00 42.81 4.46
6397 10152 4.829492 AGAAAGGCATATTTATGACCCTGC 59.171 41.667 0.00 0.00 42.81 4.85
6427 10226 5.466728 TCAGAAAAACTACTCAGCATGACAC 59.533 40.000 0.00 0.00 42.56 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 0.531974 TCAACTGGTGGAGAACGCAC 60.532 55.000 0.00 0.00 0.00 5.34
137 177 6.795114 TCTTTGTCTATTCGAAAATTGAACGC 59.205 34.615 0.00 0.00 30.20 4.84
392 432 7.285783 TCACAATTGTTCAGCGTATAGTAAC 57.714 36.000 8.77 0.00 0.00 2.50
795 960 2.735100 GCTCCTATACGGCGCTGC 60.735 66.667 18.15 0.00 40.41 5.25
798 963 2.258897 GGAGCTCCTATACGGCGC 59.741 66.667 26.25 0.00 43.98 6.53
799 964 2.963371 GGGAGCTCCTATACGGCG 59.037 66.667 31.36 4.80 35.95 6.46
800 965 2.637383 CCGGGAGCTCCTATACGGC 61.637 68.421 31.36 12.50 32.10 5.68
801 966 2.637383 GCCGGGAGCTCCTATACGG 61.637 68.421 32.14 32.14 39.23 4.02
802 967 2.637383 GGCCGGGAGCTCCTATACG 61.637 68.421 31.36 24.52 43.05 3.06
803 968 0.905337 ATGGCCGGGAGCTCCTATAC 60.905 60.000 31.36 19.37 43.05 1.47
804 969 0.178903 AATGGCCGGGAGCTCCTATA 60.179 55.000 31.36 14.31 43.05 1.31
805 970 1.062488 AAATGGCCGGGAGCTCCTAT 61.062 55.000 31.36 15.17 43.05 2.57
806 971 1.692749 AAATGGCCGGGAGCTCCTA 60.693 57.895 31.36 13.63 43.05 2.94
807 972 3.017581 AAATGGCCGGGAGCTCCT 61.018 61.111 31.36 8.54 43.05 3.69
808 973 2.631012 ATCAAATGGCCGGGAGCTCC 62.631 60.000 25.59 25.59 43.05 4.70
809 974 1.152881 ATCAAATGGCCGGGAGCTC 60.153 57.895 4.71 4.71 43.05 4.09
810 975 1.152881 GATCAAATGGCCGGGAGCT 60.153 57.895 2.18 0.00 43.05 4.09
811 976 2.546494 CGATCAAATGGCCGGGAGC 61.546 63.158 2.18 0.00 42.60 4.70
812 977 0.250467 ATCGATCAAATGGCCGGGAG 60.250 55.000 2.18 0.00 0.00 4.30
813 978 0.250295 GATCGATCAAATGGCCGGGA 60.250 55.000 20.52 0.00 0.00 5.14
814 979 1.568612 CGATCGATCAAATGGCCGGG 61.569 60.000 24.40 0.96 0.00 5.73
815 980 1.568612 CCGATCGATCAAATGGCCGG 61.569 60.000 24.40 14.00 0.00 6.13
816 981 1.862123 CCGATCGATCAAATGGCCG 59.138 57.895 24.40 8.87 0.00 6.13
817 982 0.886490 AGCCGATCGATCAAATGGCC 60.886 55.000 27.99 16.07 43.46 5.36
818 983 0.514691 GAGCCGATCGATCAAATGGC 59.485 55.000 25.78 25.78 42.76 4.40
819 984 1.151668 GGAGCCGATCGATCAAATGG 58.848 55.000 24.40 17.55 0.00 3.16
820 985 0.786581 CGGAGCCGATCGATCAAATG 59.213 55.000 24.40 10.83 42.83 2.32
821 986 0.389391 ACGGAGCCGATCGATCAAAT 59.611 50.000 24.40 9.38 42.83 2.32
822 987 1.001706 CTACGGAGCCGATCGATCAAA 60.002 52.381 24.40 3.03 42.83 2.69
823 988 0.591659 CTACGGAGCCGATCGATCAA 59.408 55.000 24.40 3.36 42.83 2.57
824 989 1.853114 GCTACGGAGCCGATCGATCA 61.853 60.000 24.40 2.08 43.49 2.92
825 990 1.154188 GCTACGGAGCCGATCGATC 60.154 63.158 18.66 15.68 43.49 3.69
826 991 2.955402 GCTACGGAGCCGATCGAT 59.045 61.111 18.66 4.31 43.49 3.59
835 1000 1.071605 GCTTGTGTTCTGCTACGGAG 58.928 55.000 0.00 0.00 0.00 4.63
836 1001 0.666274 CGCTTGTGTTCTGCTACGGA 60.666 55.000 0.00 0.00 0.00 4.69
837 1002 0.944311 ACGCTTGTGTTCTGCTACGG 60.944 55.000 0.00 0.00 0.00 4.02
838 1003 0.859232 AACGCTTGTGTTCTGCTACG 59.141 50.000 0.00 0.00 0.00 3.51
839 1004 1.597663 ACAACGCTTGTGTTCTGCTAC 59.402 47.619 3.13 0.00 43.48 3.58
840 1005 1.948104 ACAACGCTTGTGTTCTGCTA 58.052 45.000 3.13 0.00 43.48 3.49
841 1006 2.780595 ACAACGCTTGTGTTCTGCT 58.219 47.368 3.13 0.00 43.48 4.24
853 1018 3.552604 TTTTATCTCCAAGCACAACGC 57.447 42.857 0.00 0.00 42.91 4.84
854 1019 7.011389 TCTCATATTTTATCTCCAAGCACAACG 59.989 37.037 0.00 0.00 0.00 4.10
855 1020 8.213518 TCTCATATTTTATCTCCAAGCACAAC 57.786 34.615 0.00 0.00 0.00 3.32
856 1021 8.806429 TTCTCATATTTTATCTCCAAGCACAA 57.194 30.769 0.00 0.00 0.00 3.33
857 1022 7.500227 CCTTCTCATATTTTATCTCCAAGCACA 59.500 37.037 0.00 0.00 0.00 4.57
858 1023 7.716998 TCCTTCTCATATTTTATCTCCAAGCAC 59.283 37.037 0.00 0.00 0.00 4.40
859 1024 7.805163 TCCTTCTCATATTTTATCTCCAAGCA 58.195 34.615 0.00 0.00 0.00 3.91
860 1025 8.682936 TTCCTTCTCATATTTTATCTCCAAGC 57.317 34.615 0.00 0.00 0.00 4.01
869 1034 8.609176 CCGTCGATTTTTCCTTCTCATATTTTA 58.391 33.333 0.00 0.00 0.00 1.52
870 1035 7.415206 CCCGTCGATTTTTCCTTCTCATATTTT 60.415 37.037 0.00 0.00 0.00 1.82
871 1036 6.038271 CCCGTCGATTTTTCCTTCTCATATTT 59.962 38.462 0.00 0.00 0.00 1.40
872 1037 5.527582 CCCGTCGATTTTTCCTTCTCATATT 59.472 40.000 0.00 0.00 0.00 1.28
873 1038 5.057149 CCCGTCGATTTTTCCTTCTCATAT 58.943 41.667 0.00 0.00 0.00 1.78
874 1039 4.160814 TCCCGTCGATTTTTCCTTCTCATA 59.839 41.667 0.00 0.00 0.00 2.15
875 1040 3.055385 TCCCGTCGATTTTTCCTTCTCAT 60.055 43.478 0.00 0.00 0.00 2.90
876 1041 2.300723 TCCCGTCGATTTTTCCTTCTCA 59.699 45.455 0.00 0.00 0.00 3.27
877 1042 2.968675 TCCCGTCGATTTTTCCTTCTC 58.031 47.619 0.00 0.00 0.00 2.87
878 1043 3.197983 AGATCCCGTCGATTTTTCCTTCT 59.802 43.478 0.00 0.00 0.00 2.85
879 1044 3.532542 AGATCCCGTCGATTTTTCCTTC 58.467 45.455 0.00 0.00 0.00 3.46
880 1045 3.532542 GAGATCCCGTCGATTTTTCCTT 58.467 45.455 0.00 0.00 0.00 3.36
881 1046 2.158943 GGAGATCCCGTCGATTTTTCCT 60.159 50.000 0.00 0.00 0.00 3.36
882 1047 2.210961 GGAGATCCCGTCGATTTTTCC 58.789 52.381 0.00 0.00 0.00 3.13
1216 1387 2.200955 GGAAAATGAGGAGGAGGAGGT 58.799 52.381 0.00 0.00 0.00 3.85
1343 1794 2.166907 AGATGGATCGGAGTTGGAGT 57.833 50.000 0.00 0.00 0.00 3.85
1395 1846 2.035312 ACGTACTGGTCGAGGCCT 59.965 61.111 3.86 3.86 0.00 5.19
1645 2096 3.617531 CGCACCTCAAACTCAAGTATCCT 60.618 47.826 0.00 0.00 0.00 3.24
1999 2454 6.422776 AGTGAACATAATTAGTTGCTTCCG 57.577 37.500 5.41 0.00 0.00 4.30
2045 2500 3.433306 ACCAATTGTAAGCTGCCAGTA 57.567 42.857 4.43 0.00 0.00 2.74
2048 2503 2.961741 TCAAACCAATTGTAAGCTGCCA 59.038 40.909 4.43 0.00 40.11 4.92
2052 2507 5.010012 CAGGAACTCAAACCAATTGTAAGCT 59.990 40.000 4.43 0.00 40.11 3.74
2089 2544 2.290514 CCTCCTCATTGCTTCACAAGGA 60.291 50.000 0.00 0.00 46.24 3.36
2530 3550 3.818787 GCTCCCTTGTGGCATGCG 61.819 66.667 12.44 0.00 0.00 4.73
3021 4352 0.980231 TGCACCAGGTTGCCCTTTTT 60.980 50.000 10.46 0.00 42.25 1.94
3022 4353 0.763986 ATGCACCAGGTTGCCCTTTT 60.764 50.000 10.46 0.00 42.25 2.27
3023 4354 1.152269 ATGCACCAGGTTGCCCTTT 60.152 52.632 10.46 0.00 42.25 3.11
3024 4355 1.909781 CATGCACCAGGTTGCCCTT 60.910 57.895 10.46 0.00 42.25 3.95
3027 4358 1.937546 GCTACATGCACCAGGTTGCC 61.938 60.000 10.46 0.00 39.88 4.52
3028 4359 0.962356 AGCTACATGCACCAGGTTGC 60.962 55.000 8.03 8.03 44.17 4.17
3055 4386 4.785453 CTTCCCTGGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
3056 4387 4.101448 CCTTCCCTGGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
3057 4388 3.732849 CCCTTCCCTGGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
3059 4390 2.125225 GACCCTTCCCTGGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
3060 4391 3.015753 GGACCCTTCCCTGGACCC 61.016 72.222 0.00 0.00 35.57 4.46
3061 4392 3.400054 CGGACCCTTCCCTGGACC 61.400 72.222 0.00 0.00 38.99 4.46
3062 4393 2.284405 TCGGACCCTTCCCTGGAC 60.284 66.667 0.00 0.00 38.99 4.02
3064 4395 3.400054 GGTCGGACCCTTCCCTGG 61.400 72.222 16.55 0.00 38.99 4.45
3065 4396 2.606519 TGGTCGGACCCTTCCCTG 60.607 66.667 23.81 0.00 38.99 4.45
3066 4397 2.606826 GTGGTCGGACCCTTCCCT 60.607 66.667 23.81 0.00 38.99 4.20
3067 4398 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
3068 4399 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
3069 4400 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
3070 4401 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
3071 4402 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
3072 4403 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
3073 4404 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
3074 4405 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
3079 4410 3.131755 GCGTACTATAGACCCAAAGTGGT 59.868 47.826 6.78 0.00 42.79 4.16
3080 4411 3.131577 TGCGTACTATAGACCCAAAGTGG 59.868 47.826 6.78 0.00 37.25 4.00
3081 4412 4.360563 CTGCGTACTATAGACCCAAAGTG 58.639 47.826 6.78 0.00 0.00 3.16
3082 4413 3.181478 GCTGCGTACTATAGACCCAAAGT 60.181 47.826 6.78 0.00 0.00 2.66
3083 4414 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
3084 4415 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
3085 4416 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
3086 4417 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
3087 4418 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
3088 4419 3.552478 GGAAAGGCTGCGTACTATAGACC 60.552 52.174 6.78 0.00 0.00 3.85
3089 4420 3.552478 GGGAAAGGCTGCGTACTATAGAC 60.552 52.174 6.78 0.00 0.00 2.59
3090 4421 2.626743 GGGAAAGGCTGCGTACTATAGA 59.373 50.000 6.78 0.00 0.00 1.98
3091 4422 2.628657 AGGGAAAGGCTGCGTACTATAG 59.371 50.000 0.00 0.00 0.00 1.31
3092 4423 2.674420 AGGGAAAGGCTGCGTACTATA 58.326 47.619 0.00 0.00 0.00 1.31
3093 4424 1.497161 AGGGAAAGGCTGCGTACTAT 58.503 50.000 0.00 0.00 0.00 2.12
3094 4425 1.753073 GTAGGGAAAGGCTGCGTACTA 59.247 52.381 0.00 0.00 34.81 1.82
3095 4426 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73
3096 4427 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
3097 4428 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
3098 4429 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
3099 4430 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
3100 4431 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
3101 4432 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
3102 4433 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
3103 4434 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
3104 4435 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
3105 4436 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
3106 4437 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
3107 4438 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
3108 4439 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
3109 4440 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
3110 4441 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
3111 4442 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
3112 4443 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
3113 4444 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
3114 4445 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
3115 4446 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
3116 4447 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
3130 4461 1.566703 TGGGTTCAAGTCCTGGAAACA 59.433 47.619 0.00 0.00 32.36 2.83
3131 4462 2.358322 TGGGTTCAAGTCCTGGAAAC 57.642 50.000 0.00 0.00 0.00 2.78
3132 4463 2.445145 TCATGGGTTCAAGTCCTGGAAA 59.555 45.455 0.00 0.00 0.00 3.13
3133 4464 2.061848 TCATGGGTTCAAGTCCTGGAA 58.938 47.619 0.00 0.00 0.00 3.53
3134 4465 1.351017 GTCATGGGTTCAAGTCCTGGA 59.649 52.381 0.00 0.00 0.00 3.86
3135 4466 1.614317 GGTCATGGGTTCAAGTCCTGG 60.614 57.143 0.00 0.00 0.00 4.45
3136 4467 1.352352 AGGTCATGGGTTCAAGTCCTG 59.648 52.381 0.00 0.00 0.00 3.86
3137 4468 1.630878 GAGGTCATGGGTTCAAGTCCT 59.369 52.381 0.00 0.00 0.00 3.85
3138 4469 1.351017 TGAGGTCATGGGTTCAAGTCC 59.649 52.381 0.00 0.00 0.00 3.85
3139 4470 2.859165 TGAGGTCATGGGTTCAAGTC 57.141 50.000 0.00 0.00 0.00 3.01
3154 4485 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
3155 4486 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
3156 4487 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
3157 4488 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
3158 4489 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
3159 4490 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
3160 4491 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
3161 4492 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
3162 4493 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
3163 4494 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
3164 4495 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
3165 4496 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
3166 4497 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
3167 4498 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
3168 4499 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
3173 4504 1.514678 TTGGCGCAGTGGTAAAGCTG 61.515 55.000 10.83 0.00 35.93 4.24
3174 4505 1.228124 TTGGCGCAGTGGTAAAGCT 60.228 52.632 10.83 0.00 0.00 3.74
3175 4506 1.210155 CTTGGCGCAGTGGTAAAGC 59.790 57.895 10.83 0.00 0.00 3.51
3176 4507 1.875963 CCTTGGCGCAGTGGTAAAG 59.124 57.895 10.83 0.71 0.00 1.85
3177 4508 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
3178 4509 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
3179 4510 3.605749 GAGCCTTGGCGCAGTGGTA 62.606 63.158 10.83 0.00 0.00 3.25
3187 4518 3.567579 TTGAAGGGGAGCCTTGGCG 62.568 63.158 5.95 0.00 0.00 5.69
3188 4519 1.228862 TTTGAAGGGGAGCCTTGGC 60.229 57.895 2.97 2.97 0.00 4.52
3189 4520 0.178964 TGTTTGAAGGGGAGCCTTGG 60.179 55.000 0.00 0.00 0.00 3.61
3190 4521 0.961753 GTGTTTGAAGGGGAGCCTTG 59.038 55.000 0.00 0.00 0.00 3.61
3191 4522 0.555769 TGTGTTTGAAGGGGAGCCTT 59.444 50.000 0.00 0.00 0.00 4.35
3192 4523 0.111253 CTGTGTTTGAAGGGGAGCCT 59.889 55.000 0.00 0.00 0.00 4.58
3193 4524 0.178990 ACTGTGTTTGAAGGGGAGCC 60.179 55.000 0.00 0.00 0.00 4.70
3194 4525 0.954452 CACTGTGTTTGAAGGGGAGC 59.046 55.000 0.00 0.00 0.00 4.70
3195 4526 2.348411 ACACTGTGTTTGAAGGGGAG 57.652 50.000 7.80 0.00 0.00 4.30
3196 4527 2.818751 AACACTGTGTTTGAAGGGGA 57.181 45.000 19.85 0.00 37.26 4.81
3197 4528 3.551846 ACTAACACTGTGTTTGAAGGGG 58.448 45.455 31.50 16.32 41.45 4.79
3198 4529 4.196193 TGACTAACACTGTGTTTGAAGGG 58.804 43.478 31.50 17.60 41.45 3.95
3199 4530 5.811399 TTGACTAACACTGTGTTTGAAGG 57.189 39.130 31.50 18.90 41.45 3.46
3200 4531 7.220683 CCAAATTGACTAACACTGTGTTTGAAG 59.779 37.037 31.50 24.05 41.45 3.02
3201 4532 7.032580 CCAAATTGACTAACACTGTGTTTGAA 58.967 34.615 31.50 20.60 41.45 2.69
3202 4533 6.405286 CCCAAATTGACTAACACTGTGTTTGA 60.405 38.462 31.50 16.39 41.45 2.69
3203 4534 5.748152 CCCAAATTGACTAACACTGTGTTTG 59.252 40.000 28.83 27.24 41.45 2.93
3204 4535 5.420739 ACCCAAATTGACTAACACTGTGTTT 59.579 36.000 28.83 14.01 41.45 2.83
3205 4536 4.953579 ACCCAAATTGACTAACACTGTGTT 59.046 37.500 27.14 27.14 43.88 3.32
3206 4537 4.532834 ACCCAAATTGACTAACACTGTGT 58.467 39.130 7.80 7.80 0.00 3.72
3207 4538 5.514274 AACCCAAATTGACTAACACTGTG 57.486 39.130 6.19 6.19 0.00 3.66
3208 4539 7.833285 AATAACCCAAATTGACTAACACTGT 57.167 32.000 0.00 0.00 0.00 3.55
3209 4540 9.541143 AAAAATAACCCAAATTGACTAACACTG 57.459 29.630 0.00 0.00 0.00 3.66
3591 4924 6.315144 GCAGAGAAGAGGAAAACCTATTCTTC 59.685 42.308 21.51 14.55 44.91 2.87
3823 5156 5.308825 TGGAGTCTGGAAAAAGAGAACATC 58.691 41.667 0.00 0.00 0.00 3.06
4218 5551 6.895204 ACCAAACCATACCACTTAAATAGCAT 59.105 34.615 0.00 0.00 0.00 3.79
4219 5552 6.151985 CACCAAACCATACCACTTAAATAGCA 59.848 38.462 0.00 0.00 0.00 3.49
4381 5714 3.234386 GTTGACTAATTTGTTCTGGCGC 58.766 45.455 0.00 0.00 0.00 6.53
4453 5786 5.364446 TGTCCATCTCCTTACGGCTTTATAA 59.636 40.000 0.00 0.00 0.00 0.98
4742 6075 5.357032 GTCCTTCACAGACAAAGAAAAGGAA 59.643 40.000 2.71 0.00 41.64 3.36
4743 6076 4.881850 GTCCTTCACAGACAAAGAAAAGGA 59.118 41.667 0.00 0.00 38.70 3.36
4792 6125 3.142977 AGATATCTGGCCTGGTAGAGGAA 59.857 47.826 3.89 0.00 46.33 3.36
4923 6256 6.540189 ACAACAATGATAGCACTTCTATGACC 59.460 38.462 0.00 0.00 38.09 4.02
4966 6299 7.201705 GGCTTCAATATTTACACCACCTTAGTC 60.202 40.741 0.00 0.00 0.00 2.59
4994 6327 5.473504 AGAACTGTCATGAAGCCGTTTTAAT 59.526 36.000 0.00 0.00 0.00 1.40
5127 6461 5.984725 TCAGTACAAGGTACATTATGTGGG 58.015 41.667 8.26 0.00 0.00 4.61
5143 6477 4.328536 ACAACCACAAACAACTCAGTACA 58.671 39.130 0.00 0.00 0.00 2.90
5161 6495 2.722094 TGCCACAATCCCATCTACAAC 58.278 47.619 0.00 0.00 0.00 3.32
5164 6498 2.936202 ACATGCCACAATCCCATCTAC 58.064 47.619 0.00 0.00 0.00 2.59
5287 6655 9.474313 TCCTGCTGAATACATATTAAAAAGGTT 57.526 29.630 0.00 0.00 0.00 3.50
5288 6656 9.646522 ATCCTGCTGAATACATATTAAAAAGGT 57.353 29.630 0.00 0.00 0.00 3.50
5305 6673 5.441718 AAAGGTTATTCAGATCCTGCTGA 57.558 39.130 0.00 0.00 42.81 4.26
5306 6674 6.521151 AAAAAGGTTATTCAGATCCTGCTG 57.479 37.500 0.00 0.00 37.24 4.41
5307 6675 7.406104 AGTAAAAAGGTTATTCAGATCCTGCT 58.594 34.615 0.00 0.00 0.00 4.24
5308 6676 7.631717 AGTAAAAAGGTTATTCAGATCCTGC 57.368 36.000 0.00 0.00 0.00 4.85
5476 6844 3.706086 ACTTTCCTCCAGTTTGCACATTT 59.294 39.130 0.00 0.00 0.00 2.32
5676 7047 2.548295 GCAACGCCCTTTCCGTCAA 61.548 57.895 0.00 0.00 38.06 3.18
5706 7077 1.884579 ACAGACGGACATAACACGACT 59.115 47.619 0.00 0.00 33.34 4.18
5829 7202 4.710375 GCTCTTATATTATGGGACGGAGGA 59.290 45.833 0.00 0.00 0.00 3.71
5925 7310 5.448438 TGCAAACAATGAACTTACATCGTC 58.552 37.500 0.00 0.00 0.00 4.20
5972 7357 9.276791 ACTTGTAGATATATCATGGATGGACAT 57.723 33.333 15.08 0.00 0.00 3.06
5973 7358 8.670521 ACTTGTAGATATATCATGGATGGACA 57.329 34.615 15.08 3.42 0.00 4.02
5974 7359 9.593134 GAACTTGTAGATATATCATGGATGGAC 57.407 37.037 15.08 1.19 0.00 4.02
5975 7360 9.325248 TGAACTTGTAGATATATCATGGATGGA 57.675 33.333 15.08 0.00 0.00 3.41
5976 7361 9.948964 TTGAACTTGTAGATATATCATGGATGG 57.051 33.333 15.08 2.03 0.00 3.51
6144 9894 5.692115 TCTTATGGGCACATGAGAACTTA 57.308 39.130 20.26 0.00 44.01 2.24
6169 9919 5.063438 TCAAGAAATTCGTTAATCTCAGCCG 59.937 40.000 0.00 0.00 0.00 5.52
6347 10098 2.737783 CACATCGTAAAACTACGGCCAA 59.262 45.455 2.24 0.00 43.07 4.52
6394 10145 6.728200 TGAGTAGTTTTTCTGAAACATGCAG 58.272 36.000 1.58 0.00 32.81 4.41
6397 10152 6.728200 TGCTGAGTAGTTTTTCTGAAACATG 58.272 36.000 1.58 0.00 32.81 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.